mm10_v2_chr6_-_144209448_144209469	0.985117	Emx1_Emx2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209471_144209487	0.948666	Emx1_Emx2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209558_144209647	0.939586	Emx1_Emx2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr4_-_82505707_82505739	0.712218	Emx1_Emx2	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr9_+_34904913_34904913	0.70177	Emx1_Emx2	ENSMUST00000045091.6|Kirrel3|ENSMUSG00000032036.9|kin of IRRE like 3 (Drosophila)
mm10_v2_chr8_-_21906412_21906437	0.608342	Emx1_Emx2	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr3_+_127633134_127633140	0.475065	Emx1_Emx2	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr3_+_121953213_121953295	0.467696	Emx1_Emx2	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr1_-_40085823_40085862	0.464512	Emx1_Emx2	ENSMUST00000181756.1|Gm16894|ENSMUSG00000097899.1|predicted gene, 16894
mm10_v2_chr17_-_48432723_48432741	0.452514	Emx1_Emx2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr13_-_58354862_58354862	0.446989	Emx1_Emx2	ENSMUST00000043605.5|Kif27|ENSMUSG00000060176.3|kinesin family member 27
mm10_v2_chr14_+_26259109_26259109	0.439059	Emx1_Emx2	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr4_-_82505749_82505802	0.432496	Emx1_Emx2	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505274_82505358	0.421199	Emx1_Emx2	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr7_+_126781483_126781483	0.418646	Emx1_Emx2	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr7_-_42706369_42706369	0.354376	Emx1_Emx2	ENSMUST00000180131.1|Gm17067|ENSMUSG00000095144.1|predicted gene 17067
mm10_v2_chr10_+_90071095_90071117	0.353908	Emx1_Emx2	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr4_+_102589687_102589843	0.327609	Emx1_Emx2	ENSMUST00000097949.4|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific 	ENSMUST00000106901.1|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr14_-_96519067_96519102	0.313114	Emx1_Emx2	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr17_+_45734506_45734630	0.296438	Emx1_Emx2	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr7_-_142661858_142661880	0.292437	Emx1_Emx2	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr16_-_63864114_63864182	0.286305	Emx1_Emx2	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr12_-_90969768_90969790	0.282912	Emx1_Emx2	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr14_-_57133585_57133618	0.279483	Emx1_Emx2	ENSMUST00000039380.8|Gjb6|ENSMUSG00000040055.8|gap junction protein, beta 6
mm10_v2_chr4_-_86669492_86669560	0.267995	Emx1_Emx2	ENSMUST00000149700.1|Plin2|ENSMUSG00000028494.6|perilipin 2
mm10_v2_chr1_+_32172711_32172806	0.254469	Emx1_Emx2	ENSMUST00000027226.5|Khdrbs2|ENSMUSG00000026058.5|KH domain containing, RNA binding, signal transduction associated 2
mm10_v2_chr13_+_16014457_16014475	0.252675	Emx1_Emx2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr12_-_98577940_98578046	0.248402	Emx1_Emx2	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr10_+_69787431_69787458	0.233735	Emx1_Emx2	ENSMUST00000183240.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr6_-_101377342_101377388	0.232542	Emx1_Emx2	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr14_+_53324632_53324632	0.22791	Emx1_Emx2	ENSMUST00000178100.1|Trav7n-6|ENSMUSG00000095415.1|T cell receptor alpha variable 7N-6
mm10_v2_chr2_-_5676046_5676065	0.211807	Emx1_Emx2	ENSMUST00000114987.3|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr7_-_103827922_103828096	0.205641	Emx1_Emx2	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr3_+_32708546_32708738	0.1971	Emx1_Emx2	ENSMUST00000029214.7|Actl6a|ENSMUSG00000027671.8|actin-like 6A
mm10_v2_chrX_+_159303266_159303281	0.189775	Emx1_Emx2	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr19_+_23723279_23723279	0.185377	Emx1_Emx2	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr6_-_57535422_57535447	0.177827	Emx1_Emx2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr7_-_97738222_97738317	0.176202	Emx1_Emx2	ENSMUST00000084986.6|Aqp11|ENSMUSG00000042797.8|aquaporin 11
mm10_v2_chr3_+_137341067_137341095	0.175262	Emx1_Emx2	ENSMUST00000122064.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr12_+_109545390_109545443	0.156234	Emx1_Emx2	ENSMUST00000146701.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr15_+_80711292_80711340	0.1553	Emx1_Emx2	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr12_-_12940600_12940616	0.143063	Emx1_Emx2	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr8_+_69300776_69300776	0.136619	Emx1_Emx2	ENSMUST00000078257.6|D130040H23Rik|ENSMUSG00000079038.2|RIKEN cDNA D130040H23 gene
mm10_v2_chrX_+_8271133_8271179	0.133343	Emx1_Emx2	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr4_-_94603239_94603253	0.120014	Emx1_Emx2	ENSMUST00000107107.2|Plaa|ENSMUSG00000028577.7|phospholipase A2, activating protein
mm10_v2_chr15_+_85510812_85510812	0.119615	Emx1_Emx2	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr9_+_87022014_87022179	0.117999	Emx1_Emx2	ENSMUST00000168529.2|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000174724.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4 	ENSMUST00000173126.1|Cyb5r4|ENSMUSG00000032872.10|cytochrome b5 reductase 4
mm10_v2_chr10_+_79996479_79996505	0.115886	Emx1_Emx2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr3_+_137341103_137341146	0.114445	Emx1_Emx2	ENSMUST00000119475.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr6_-_50456085_50456174	0.113026	Emx1_Emx2	ENSMUST00000146341.1|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3 	ENSMUST00000071728.4|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr7_-_5413145_5413145	0.110949	Emx1_Emx2	ENSMUST00000108569.2|Vmn1r58|ENSMUSG00000078808.4|vomeronasal 1 receptor 58
mm10_v2_chr2_+_121506748_121506792	0.110846	Emx1_Emx2	ENSMUST00000099473.3|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76 	ENSMUST00000110602.2|Wdr76|ENSMUSG00000027242.8|WD repeat domain 76
mm10_v2_chr18_+_57142782_57142796	0.110684	Emx1_Emx2	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr8_+_45507768_45507818	0.110535	Emx1_Emx2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr8_-_125898291_125898322	0.109838	Emx1_Emx2	ENSMUST00000047239.6|Pcnxl2|ENSMUSG00000060212.7|pecanex-like 2 (Drosophila)
mm10_v2_chr4_+_32657107_32657166	0.109297	Emx1_Emx2	ENSMUST00000071642.4|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast) 	ENSMUST00000178134.1|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast)
mm10_v2_chr7_-_38019505_38019552	0.109073	Emx1_Emx2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr1_-_23909687_23909706	0.105215	Emx1_Emx2	ENSMUST00000129254.1|Smap1|ENSMUSG00000026155.7|small ArfGAP 1
mm10_v2_chr7_+_39588931_39588931	0.104392	Emx1_Emx2	ENSMUST00000178791.1|Gm2058|ENSMUSG00000074903.4|predicted gene 2058 	ENSMUST00000098511.3|Gm2058|ENSMUSG00000074903.4|predicted gene 2058
mm10_v2_chr13_-_99516537_99516602	0.103007	Emx1_Emx2	ENSMUST00000064762.4|Map1b|ENSMUSG00000052727.5|microtubule-associated protein 1B
mm10_v2_chr1_+_75521521_75521602	0.0977529	Emx1_Emx2	ENSMUST00000027414.9|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein 	ENSMUST00000113553.1|Stk11ip|ENSMUSG00000026213.9|serine/threonine kinase 11 interacting protein
mm10_v2_chr12_-_98259416_98259459	0.0964002	Emx1_Emx2	ENSMUST00000021390.7|Galc|ENSMUSG00000021003.9|galactosylceramidase
mm10_v2_chr5_+_121749196_121749196	0.0941694	Emx1_Emx2	ENSMUST00000161064.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr9_-_15301555_15301607	0.0941003	Emx1_Emx2	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr10_-_42583628_42583639	0.0918518	Emx1_Emx2	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr18_-_66002612_66002637	0.091291	Emx1_Emx2	ENSMUST00000120461.1|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1 	ENSMUST00000048260.7|Lman1|ENSMUSG00000041891.9|lectin, mannose-binding, 1
mm10_v2_chr11_-_79962374_79962398	0.0896816	Emx1_Emx2	ENSMUST00000108241.1|Utp6|ENSMUSG00000035575.5|UTP6, small subunit (SSU) processome component, homolog (yeast) 	ENSMUST00000043152.5|Utp6|ENSMUSG00000035575.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
mm10_v2_chrX_+_106920618_106920632	0.0883701	Emx1_Emx2	ENSMUST00000060576.7|Lpar4|ENSMUSG00000049929.7|lysophosphatidic acid receptor 4
mm10_v2_chr12_+_84285232_84285414	0.0780198	Emx1_Emx2	ENSMUST00000123614.1|Ptgr2|ENSMUSG00000072946.6|prostaglandin reductase 2 	ENSMUST00000147363.1|Ptgr2|ENSMUSG00000072946.6|prostaglandin reductase 2 	ENSMUST00000135001.1|Ptgr2|ENSMUSG00000072946.6|prostaglandin reductase 2 	ENSMUST00000146377.1|Ptgr2|ENSMUSG00000072946.6|prostaglandin reductase 2
mm10_v2_chr9_+_78191966_78191999	0.0766418	Emx1_Emx2	ENSMUST00000034903.5|Gsta4|ENSMUSG00000032348.5|glutathione S-transferase, alpha 4
mm10_v2_chr17_+_14943184_14943281	0.071618	Emx1_Emx2	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chr10_-_76110956_76110962	0.0714754	Emx1_Emx2	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr1_-_37496095_37496156	0.0699548	Emx1_Emx2	ENSMUST00000148047.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A 	ENSMUST00000143636.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr1_-_174921813_174921827	0.0696973	Emx1_Emx2	ENSMUST00000055294.3|Grem2|ENSMUSG00000050069.3|gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
mm10_v2_chr4_-_64276595_64276604	0.0679757	Emx1_Emx2	ENSMUST00000141162.1|Gm11217|ENSMUSG00000085032.1|predicted gene 11217
mm10_v2_chr17_-_45686899_45686923	0.0676616	Emx1_Emx2	ENSMUST00000156254.1|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr1_-_184999549_184999549	0.0658986	Emx1_Emx2	ENSMUST00000027929.4|Mark1|ENSMUSG00000026620.6|MAP/microtubule affinity-regulating kinase 1
mm10_v2_chr14_+_46832127_46832151	0.0656485	Emx1_Emx2	ENSMUST00000068532.8|Cgrrf1|ENSMUSG00000055128.8|cell growth regulator with ring finger domain 1
mm10_v2_chr7_-_143649614_143649671	0.0655069	Emx1_Emx2	ENSMUST00000129476.1|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000084396.3|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000075588.6|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22 	ENSMUST00000146692.1|Tnfrsf22|ENSMUSG00000010751.8|tumor necrosis factor receptor superfamily, member 22
mm10_v2_chr12_-_84617326_84617466	0.0653101	Emx1_Emx2	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr14_+_26119811_26119811	0.0647425	Emx1_Emx2	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr2_+_69789647_69789749	0.0644711	Emx1_Emx2	ENSMUST00000112266.1|Phospho2|ENSMUSG00000027088.4|phosphatase, orphan 2
mm10_v2_chr3_+_88716884_88716906	0.0637622	Emx1_Emx2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr16_-_97170707_97170759	0.0631518	Emx1_Emx2	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr17_-_78684262_78684352	0.0616506	Emx1_Emx2	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr17_-_32822200_32822200	0.0613102	Emx1_Emx2	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chrX_+_106027300_106027323	0.0591537	Emx1_Emx2	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chrX_+_106027259_106027293	0.0568888	Emx1_Emx2	ENSMUST00000113557.1|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr2_-_156392829_156392993	0.0568709	Emx1_Emx2	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr8_-_85432841_85432859	0.0563151	Emx1_Emx2	ENSMUST00000047749.5|4921524J17Rik|ENSMUSG00000036934.8|RIKEN cDNA 4921524J17 gene
mm10_v2_chr3_+_146852359_146852438	0.0558579	Emx1_Emx2	ENSMUST00000038090.5|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7 	ENSMUST00000170055.1|Ttll7|ENSMUSG00000036745.9|tubulin tyrosine ligase-like family, member 7
mm10_v2_chr3_+_88716838_88716883	0.0542281	Emx1_Emx2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr14_-_104522615_104522707	0.0538815	Emx1_Emx2	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr14_+_25980039_25980039	0.0528931	Emx1_Emx2	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr1_-_158356258_158356313	0.0518417	Emx1_Emx2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr15_-_103366763_103366798	0.051478	Emx1_Emx2	ENSMUST00000023128.6|Itga5|ENSMUSG00000000555.6|integrin alpha 5 (fibronectin receptor alpha)
mm10_v2_chr4_-_11254248_11254266	0.0510164	Emx1_Emx2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chrX_-_160138375_160138435	0.0509094	Emx1_Emx2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr2_-_73580288_73580353	0.0505223	Emx1_Emx2	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr12_-_87388317_87388355	0.0496666	Emx1_Emx2	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr15_+_99295087_99295279	0.048997	Emx1_Emx2	ENSMUST00000128352.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast) 	ENSMUST00000145482.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm10_v2_chr8_+_34054622_34054647	0.048799	Emx1_Emx2	ENSMUST00000149618.1|Gm9951|ENSMUSG00000054618.8|predicted gene 9951
mm10_v2_chr2_-_155930190_155930310	0.0477717	Emx1_Emx2	ENSMUST00000109636.4|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109631.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr13_-_4609122_4609189	0.0468752	Emx1_Emx2	ENSMUST00000110691.3|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1 	ENSMUST00000091848.5|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1
mm10_v2_chr2_+_129100995_129101066	0.04639	Emx1_Emx2	ENSMUST00000103205.4|Polr1b|ENSMUSG00000027395.9|polymerase (RNA) I polypeptide B 	ENSMUST00000028874.7|Polr1b|ENSMUSG00000027395.9|polymerase (RNA) I polypeptide B
mm10_v2_chr6_+_37870786_37870882	0.0431004	Emx1_Emx2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr18_-_6241470_6241482	0.0413685	Emx1_Emx2	ENSMUST00000163210.1|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr2_-_155930018_155930066	0.0406151	Emx1_Emx2	ENSMUST00000152766.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000139232.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109632.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000006036.6|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000142655.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000159238.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr2_-_12419456_12419474	0.0404001	Emx1_Emx2	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr4_-_155645408_155645408	0.0403057	Emx1_Emx2	ENSMUST00000115821.2|Gm10563|ENSMUSG00000073682.3|predicted gene 10563
mm10_v2_chr12_+_80463095_80463179	0.0365361	Emx1_Emx2	ENSMUST00000038185.8|Exd2|ENSMUSG00000032705.8|exonuclease 3'-5' domain containing 2
mm10_v2_chr17_-_24479034_24479083	0.0354808	Emx1_Emx2	ENSMUST00000179163.1|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae) 	ENSMUST00000070888.6|Mlst8|ENSMUSG00000024142.8|MTOR associated protein, LST8 homolog (S. cerevisiae)
mm10_v2_chr7_-_30534180_30534180	0.0339466	Emx1_Emx2	ENSMUST00000044338.4|Arhgap33|ENSMUSG00000036882.6|Rho GTPase activating protein 33
mm10_v2_chr7_-_115846080_115846112	0.033055	Emx1_Emx2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr5_-_121502980_121502980	0.0322828	Emx1_Emx2	ENSMUST00000079368.3|Adam1b|ENSMUSG00000062438.3|a disintegrin and metallopeptidase domain 1b
mm10_v2_chr1_-_63176653_63176822	0.0311194	Emx1_Emx2	ENSMUST00000027111.8|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1 	ENSMUST00000168099.2|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm10_v2_chrX_-_74393003_74393072	0.0288834	Emx1_Emx2	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr13_-_23934156_23934225	0.0288463	Emx1_Emx2	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr6_-_145047636_145047661	0.0285142	Emx1_Emx2	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr4_+_41966058_41966058	0.0283162	Emx1_Emx2	ENSMUST00000108026.2|Gm20938|ENSMUSG00000078746.2|predicted gene, 20938
mm10_v2_chr11_-_106998483_106998491	0.0281681	Emx1_Emx2	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr3_+_108571699_108571699	0.0278961	Emx1_Emx2	ENSMUST00000143054.1|Taf13|ENSMUSG00000048100.7|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr7_+_129591859_129591871	0.0276766	Emx1_Emx2	ENSMUST00000084519.5|Wdr11|ENSMUSG00000042055.7|WD repeat domain 11
mm10_v2_chr10_-_86011833_86011896	0.0257053	Emx1_Emx2	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr10_+_52022502_52022534	0.0242053	Emx1_Emx2	ENSMUST00000163017.1|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila) 	ENSMUST00000058347.4|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila)
mm10_v2_chr8_+_93810832_93810843	0.0239172	Emx1_Emx2	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr6_-_145047725_145047853	0.023476	Emx1_Emx2	ENSMUST00000123930.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr1_-_97761538_97761609	0.023034	Emx1_Emx2	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr14_+_26119173_26119173	0.0226282	Emx1_Emx2	ENSMUST00000174564.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr14_+_26258786_26258786	0.0226282	Emx1_Emx2	ENSMUST00000172517.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr1_+_163779575_163779592	0.0217733	Emx1_Emx2	ENSMUST00000027877.6|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3 	ENSMUST00000077642.5|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3
mm10_v2_chr4_+_83417715_83417758	0.0191547	Emx1_Emx2	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr10_+_20347788_20347859	0.0177992	Emx1_Emx2	ENSMUST00000169712.1|Mtfr2|ENSMUSG00000019992.7|mitochondrial fission regulator 2
mm10_v2_chr4_+_110397764_110397808	0.0164459	Emx1_Emx2	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr2_-_12419387_12419399	0.0164242	Emx1_Emx2	ENSMUST00000124515.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr3_+_63976106_63976135	0.0144819	Emx1_Emx2	ENSMUST00000029405.7|Gmps|ENSMUSG00000027823.8|guanine monophosphate synthetase
mm10_v2_chr6_+_66896397_66896479	0.0142928	Emx1_Emx2	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr9_+_65890237_65890343	0.012436	Emx1_Emx2	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr9_-_53667429_53667521	0.00971714	Emx1_Emx2	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chr2_-_93452679_93452687	0.00958712	Emx1_Emx2	ENSMUST00000111257.1|Cd82|ENSMUSG00000027215.7|CD82 antigen 	ENSMUST00000145553.1|Cd82|ENSMUSG00000027215.7|CD82 antigen
mm10_v2_chr5_-_5266038_5266292	0.00885834	Emx1_Emx2	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr17_-_47043039_47043039	0.00839685	Emx1_Emx2	ENSMUST00000075152.5|Gm4945|ENSMUSG00000062472.5|predicted gene 4945
mm10_v2_chr18_-_6241486_6241550	0.00752202	Emx1_Emx2	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chr6_+_42245907_42245977	0.00716778	Emx1_Emx2	ENSMUST00000031897.5|Gstk1|ENSMUSG00000029864.5|glutathione S-transferase kappa 1
mm10_v2_chr11_+_109543694_109543754	0.00536188	Emx1_Emx2	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr12_-_87444017_87444017	0.00491514	Emx1_Emx2	ENSMUST00000091090.4|2700073G19Rik|ENSMUSG00000021041.7|RIKEN cDNA 2700073G19 gene
mm10_v2_chr16_-_59553970_59553970	0.00484976	Emx1_Emx2	ENSMUST00000139989.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr7_+_78783119_78783119	0.00337426	Emx1_Emx2	ENSMUST00000032840.4|Mrps11|ENSMUSG00000030611.4|mitochondrial ribosomal protein S11
mm10_v2_chr1_-_162898665_162898728	0.00228293	Emx1_Emx2	ENSMUST00000111510.1|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2 	ENSMUST00000045902.6|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2
mm10_v2_chr16_-_16829276_16829349	0.00147334	Emx1_Emx2	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr11_-_78245942_78245987	0.00125435	Emx1_Emx2	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr14_+_25979401_25979401	0.000406736	Emx1_Emx2	ENSMUST00000173580.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr3_+_146121655_146121683	0.000280484	Emx1_Emx2	ENSMUST00000039450.4|Mcoln3|ENSMUSG00000036853.4|mucolipin 3
