mm10_v2_chr16_+_91269759_91269778	7.06806	Gli3_Zic1	ENSMUST00000056882.5|Olig1|ENSMUSG00000046160.5|oligodendrocyte transcription factor 1
mm10_v2_chr6_+_17463749_17463809	4.30778	Gli3_Zic1	ENSMUST00000115443.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr14_-_55560340_55560406	3.98163	Gli3_Zic1	ENSMUST00000066106.3|A730061H03Rik|ENSMUSG00000053588.3|RIKEN cDNA A730061H03 gene
mm10_v2_chr1_+_195017399_195017431	3.91619	Gli3_Zic1	ENSMUST00000181273.1|A330023F24Rik|ENSMUSG00000096929.1|RIKEN cDNA A330023F24 gene
mm10_v2_chr9_-_54661870_54661912	3.82818	Gli3_Zic1	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr8_+_70501116_70501172	3.00884	Gli3_Zic1	ENSMUST00000127983.1|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr8_+_76902277_76902476	2.99654	Gli3_Zic1	ENSMUST00000109912.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000128862.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2 	ENSMUST00000109911.1|Nr3c2|ENSMUSG00000031618.7|nuclear receptor subfamily 3, group C, member 2
mm10_v2_chr6_+_17463826_17463829	2.64834	Gli3_Zic1	ENSMUST00000140070.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr6_+_110645572_110645588	2.62001	Gli3_Zic1	ENSMUST00000071076.6|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7 	ENSMUST00000172951.1|Grm7|ENSMUSG00000056755.7|glutamate receptor, metabotropic 7
mm10_v2_chr11_-_42182163_42182222	2.42139	Gli3_Zic1	ENSMUST00000153147.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr10_-_127341583_127341614	2.33966	Gli3_Zic1	ENSMUST00000026474.3|Gli1|ENSMUSG00000025407.6|GLI-Kruppel family member GLI1
mm10_v2_chr8_-_105966038_105966120	2.33866	Gli3_Zic1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr11_+_93098404_93098437	2.32957	Gli3_Zic1	ENSMUST00000107859.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000042943.6|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107861.1|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10 	ENSMUST00000107858.2|Car10|ENSMUSG00000056158.8|carbonic anhydrase 10
mm10_v2_chr2_-_155945282_155945367	2.30405	Gli3_Zic1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr16_+_43503607_43503642	2.28331	Gli3_Zic1	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr8_-_105637403_105637497	2.19351	Gli3_Zic1	ENSMUST00000182046.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr8_-_105637350_105637392	2.09997	Gli3_Zic1	ENSMUST00000182863.1|Gm5914|ENSMUSG00000098120.1|predicted gene 5914
mm10_v2_chr7_+_35119285_35119301	2.09386	Gli3_Zic1	ENSMUST00000042985.9|Cebpa|ENSMUSG00000034957.9|CCAAT/enhancer binding protein (C/EBP), alpha
mm10_v2_chr1_+_129273344_129273470	2.0938	Gli3_Zic1	ENSMUST00000073527.6|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B 	ENSMUST00000040311.7|Thsd7b|ENSMUSG00000042581.8|thrombospondin, type I, domain containing 7B
mm10_v2_chr4_+_124657646_124657656	2.04564	Gli3_Zic1	ENSMUST00000053491.7|Pou3f1|ENSMUSG00000090125.2|POU domain, class 3, transcription factor 1
mm10_v2_chr7_-_19698383_19698407	2.03409	Gli3_Zic1	ENSMUST00000173739.1|Apoe|ENSMUSG00000002985.9|apolipoprotein E
mm10_v2_chrX_-_16911774_16911774	2.02089	Gli3_Zic1	ENSMUST00000040134.7|Ndp|ENSMUSG00000040138.7|Norrie disease (pseudoglioma) (human)
mm10_v2_chr17_-_68004075_68004140	1.99093	Gli3_Zic1	ENSMUST00000024840.5|Arhgap28|ENSMUSG00000024043.7|Rho GTPase activating protein 28
mm10_v2_chr6_+_17463927_17464071	1.96502	Gli3_Zic1	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr4_+_144893077_144893103	1.95201	Gli3_Zic1	ENSMUST00000154208.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr10_-_49788743_49788769	1.84229	Gli3_Zic1	ENSMUST00000105483.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105487.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chrX_+_140956892_140956923	1.82018	Gli3_Zic1	ENSMUST00000112971.1|Atg4a|ENSMUSG00000079418.3|autophagy related 4A, cysteine peptidase
mm10_v2_chr6_-_125494754_125494791	1.75755	Gli3_Zic1	ENSMUST00000032492.8|Cd9|ENSMUSG00000030342.8|CD9 antigen
mm10_v2_chr2_+_70562007_70562042	1.74538	Gli3_Zic1	ENSMUST00000094934.4|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr6_+_86195214_86195251	1.73141	Gli3_Zic1	ENSMUST00000032066.9|Tgfa|ENSMUSG00000029999.9|transforming growth factor alpha
mm10_v2_chr6_+_29694204_29694250	1.63847	Gli3_Zic1	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr18_+_52767994_52768149	1.62463	Gli3_Zic1	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chrX_-_7574120_7574312	1.62139	Gli3_Zic1	ENSMUST00000045924.7|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000115742.2|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F 	ENSMUST00000150787.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr8_+_127064022_127064086	1.61849	Gli3_Zic1	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr7_-_142657466_142657496	1.58837	Gli3_Zic1	ENSMUST00000097936.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2 	ENSMUST00000000033.5|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr8_+_127063893_127063916	1.53016	Gli3_Zic1	ENSMUST00000162309.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr8_+_127064107_127064347	1.51831	Gli3_Zic1	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr6_+_125494419_125494454	1.45863	Gli3_Zic1	ENSMUST00000181266.1|Gm26728|ENSMUSG00000097114.1|predicted gene, 26728
mm10_v2_chr9_-_123678782_123678850	1.44874	Gli3_Zic1	ENSMUST00000170591.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A 	ENSMUST00000171647.1|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr6_+_17491216_17491242	1.43437	Gli3_Zic1	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr18_-_38601268_38601355	1.42949	Gli3_Zic1	ENSMUST00000025295.6|Spry4|ENSMUSG00000024427.6|sprouty homolog 4 (Drosophila)
mm10_v2_chr7_+_5056706_5056741	1.4153	Gli3_Zic1	ENSMUST00000144802.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr4_-_128962420_128962449	1.38224	Gli3_Zic1	ENSMUST00000119354.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000106068.1|Adc|ENSMUSG00000028789.10|arginine decarboxylase 	ENSMUST00000030581.3|Adc|ENSMUSG00000028789.10|arginine decarboxylase
mm10_v2_chr13_-_56895737_56895793	1.38042	Gli3_Zic1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr2_-_59948155_59948216	1.3573	Gli3_Zic1	ENSMUST00000153136.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chr7_-_100656953_100657103	1.24821	Gli3_Zic1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr16_+_64851991_64851996	1.22167	Gli3_Zic1	ENSMUST00000067744.7|Cggbp1|ENSMUSG00000054604.7|CGG triplet repeat binding protein 1
mm10_v2_chr12_+_103314944_103314962	1.22017	Gli3_Zic1	ENSMUST00000179363.1|Fam181a|ENSMUSG00000096753.1|family with sequence similarity 181, member A
mm10_v2_chr4_-_136956784_136956871	1.21673	Gli3_Zic1	ENSMUST00000030420.8|Epha8|ENSMUSG00000028661.8|Eph receptor A8
mm10_v2_chr7_+_45017953_45018009	1.21072	Gli3_Zic1	ENSMUST00000044111.7|Rras|ENSMUSG00000038387.7|Harvey rat sarcoma oncogene, subgroup R
mm10_v2_chr9_-_123678873_123678885	1.20027	Gli3_Zic1	ENSMUST00000040960.6|Slc6a20a|ENSMUSG00000036814.6|solute carrier family 6 (neurotransmitter transporter), member 20A
mm10_v2_chr17_-_24650270_24650311	1.19495	Gli3_Zic1	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr16_-_46496955_46496986	1.19089	Gli3_Zic1	ENSMUST00000023335.6|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000023334.8|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr10_+_80249441_80249468	1.16072	Gli3_Zic1	ENSMUST00000020361.6|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr4_+_45848816_45848950	1.15854	Gli3_Zic1	ENSMUST00000107782.1|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene 	ENSMUST00000030011.5|1300002K09Rik|ENSMUSG00000028327.8|RIKEN cDNA 1300002K09 gene
mm10_v2_chr1_+_42697146_42697146	1.14648	Gli3_Zic1	ENSMUST00000054883.2|Pou3f3|ENSMUSG00000045515.2|POU domain, class 3, transcription factor 3
mm10_v2_chr11_+_101246405_101246567	1.12228	Gli3_Zic1	ENSMUST00000122006.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2 	ENSMUST00000151830.1|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr2_+_78869009_78869109	1.1151	Gli3_Zic1	ENSMUST00000028398.7|Ube2e3|ENSMUSG00000027011.8|ubiquitin-conjugating enzyme E2E 3
mm10_v2_chr14_+_84443553_84443568	1.10919	Gli3_Zic1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr19_-_5085483_5085531	1.10643	Gli3_Zic1	ENSMUST00000140389.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000151413.1|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A 	ENSMUST00000077066.7|Tmem151a|ENSMUSG00000061451.7|transmembrane protein 151A
mm10_v2_chr10_+_80249106_80249124	1.09547	Gli3_Zic1	ENSMUST00000105364.1|Ndufs7|ENSMUSG00000020153.8|NADH dehydrogenase (ubiquinone) Fe-S protein 7
mm10_v2_chr11_-_100939540_100939566	1.07766	Gli3_Zic1	ENSMUST00000127638.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr6_+_113531675_113531721	1.06928	Gli3_Zic1	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr6_-_35308110_35308136	1.0596	Gli3_Zic1	ENSMUST00000031868.4|Slc13a4|ENSMUSG00000029843.4|solute carrier family 13 (sodium/sulfate symporters), member 4
mm10_v2_chr7_-_142372210_142372292	1.05406	Gli3_Zic1	ENSMUST00000084412.5|Ifitm10|ENSMUSG00000045777.8|interferon induced transmembrane protein 10
mm10_v2_chr14_+_51984857_51984971	1.05229	Gli3_Zic1	ENSMUST00000100639.4|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182909.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182760.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182061.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40 	ENSMUST00000182193.1|Arhgef40|ENSMUSG00000004562.10|Rho guanine nucleotide exchange factor (GEF) 40
mm10_v2_chr18_+_5593566_5593602	1.04645	Gli3_Zic1	ENSMUST00000160910.1|Zeb1|ENSMUSG00000024238.7|zinc finger E-box binding homeobox 1
mm10_v2_chr16_-_46496772_46496883	1.04575	Gli3_Zic1	ENSMUST00000149901.1|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3 	ENSMUST00000096052.2|Pvrl3|ENSMUSG00000022656.9|poliovirus receptor-related 3
mm10_v2_chr5_+_71699918_71699949	1.04104	Gli3_Zic1	ENSMUST00000031122.7|Gabrb1|ENSMUSG00000029212.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 1
mm10_v2_chr2_+_49451486_49451559	1.01839	Gli3_Zic1	ENSMUST00000092123.4|Epc2|ENSMUSG00000069495.6|enhancer of polycomb homolog 2 (Drosophila)
mm10_v2_chr5_-_147725988_147726023	1.01421	Gli3_Zic1	ENSMUST00000110529.1|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031652.3|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1 	ENSMUST00000031653.5|Flt1|ENSMUSG00000029648.7|FMS-like tyrosine kinase 1
mm10_v2_chr10_-_99126321_99126321	1.00028	Gli3_Zic1	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr10_+_26772477_26772515	0.989884	Gli3_Zic1	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr19_+_42045792_42045897	0.988813	Gli3_Zic1	ENSMUST00000172244.1|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1 	ENSMUST00000081714.4|Hoga1|ENSMUSG00000025176.8|4-hydroxy-2-oxoglutarate aldolase 1
mm10_v2_chrM_+_7005_7022	0.985064	Gli3_Zic1	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr11_-_100939357_100939456	0.980702	Gli3_Zic1	ENSMUST00000092671.5|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3 	ENSMUST00000103114.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr7_+_5056856_5056916	0.977745	Gli3_Zic1	ENSMUST00000131368.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106 	ENSMUST00000123956.1|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr7_+_5057161_5057197	0.977413	Gli3_Zic1	ENSMUST00000045543.5|Ccdc106|ENSMUSG00000035228.8|coiled-coil domain containing 106
mm10_v2_chr11_+_70000578_70000624	0.966221	Gli3_Zic1	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr15_+_78899755_78899775	0.9632	Gli3_Zic1	ENSMUST00000001226.3|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000061239.7|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1 	ENSMUST00000109698.2|Sh3bp1|ENSMUSG00000022436.9|SH3-domain binding protein 1
mm10_v2_chr7_+_27499315_27499331	0.955315	Gli3_Zic1	ENSMUST00000098644.2|Prx|ENSMUSG00000053198.7|periaxin 	ENSMUST00000108355.1|Prx|ENSMUSG00000053198.7|periaxin
mm10_v2_chr11_+_51289920_51290011	0.931577	Gli3_Zic1	ENSMUST00000102765.2|Col23a1|ENSMUSG00000063564.7|collagen, type XXIII, alpha 1
mm10_v2_chr15_+_103503261_103503298	0.928995	Gli3_Zic1	ENSMUST00000023132.3|Pde1b|ENSMUSG00000022489.5|phosphodiesterase 1B, Ca2+-calmodulin dependent
mm10_v2_chr4_-_4138432_4138480	0.927188	Gli3_Zic1	ENSMUST00000070375.7|Penk|ENSMUSG00000045573.9|preproenkephalin
mm10_v2_chr1_+_167598384_167598411	0.914822	Gli3_Zic1	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr2_+_32646586_32646602	0.910585	Gli3_Zic1	ENSMUST00000009705.7|Eng|ENSMUSG00000026814.10|endoglin 	ENSMUST00000167841.1|Eng|ENSMUSG00000026814.10|endoglin
mm10_v2_chr12_-_4233958_4233981	0.881493	Gli3_Zic1	ENSMUST00000111169.3|Cenpo|ENSMUSG00000020652.11|centromere protein O 	ENSMUST00000020981.5|Cenpo|ENSMUSG00000020652.11|centromere protein O
mm10_v2_chr15_+_99074968_99075005	0.872607	Gli3_Zic1	ENSMUST00000039665.6|Troap|ENSMUSG00000032783.8|trophinin associated protein
mm10_v2_chr16_+_20733104_20733158	0.865549	Gli3_Zic1	ENSMUST00000115423.1|Chrd|ENSMUSG00000006958.7|chordin 	ENSMUST00000007171.6|Chrd|ENSMUSG00000006958.7|chordin
mm10_v2_chr2_-_36104060_36104073	0.863492	Gli3_Zic1	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr11_-_100939457_100939484	0.857359	Gli3_Zic1	ENSMUST00000138438.1|Stat3|ENSMUSG00000004040.10|signal transducer and activator of transcription 3
mm10_v2_chr17_-_28350747_28350820	0.853329	Gli3_Zic1	ENSMUST00000080572.7|Tead3|ENSMUSG00000002249.11|TEA domain family member 3 	ENSMUST00000156862.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr9_-_103480328_103480348	0.851543	Gli3_Zic1	ENSMUST00000124310.2|Bfsp2|ENSMUSG00000032556.9|beaded filament structural protein 2, phakinin
mm10_v2_chr11_+_101246960_101247093	0.827615	Gli3_Zic1	ENSMUST00000107282.3|Ramp2|ENSMUSG00000001240.7|receptor (calcitonin) activity modifying protein 2
mm10_v2_chr9_+_50752758_50752894	0.824104	Gli3_Zic1	ENSMUST00000034562.7|Cryab|ENSMUSG00000032060.9|crystallin, alpha B
mm10_v2_chr19_-_32388462_32388512	0.80654	Gli3_Zic1	ENSMUST00000099514.3|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chrX_+_161717498_161717627	0.800569	Gli3_Zic1	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr11_-_86544754_86544805	0.796787	Gli3_Zic1	ENSMUST00000138810.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000058286.2|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1 	ENSMUST00000154617.1|Rps6kb1|ENSMUSG00000020516.9|ribosomal protein S6 kinase, polypeptide 1
mm10_v2_chr2_+_38339258_38339281	0.796163	Gli3_Zic1	ENSMUST00000143783.2|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr16_-_44016387_44016436	0.793014	Gli3_Zic1	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr7_-_81454751_81454764	0.781387	Gli3_Zic1	ENSMUST00000098331.3|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1 	ENSMUST00000178892.1|Cpeb1|ENSMUSG00000025586.10|cytoplasmic polyadenylation element binding protein 1
mm10_v2_chrX_+_10717390_10717450	0.779845	Gli3_Zic1	ENSMUST00000115524.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 	ENSMUST00000008179.6|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr15_-_89379246_89379262	0.767248	Gli3_Zic1	ENSMUST00000049968.7|Odf3b|ENSMUSG00000047394.7|outer dense fiber of sperm tails 3B
mm10_v2_chr12_+_109453455_109453660	0.762642	Gli3_Zic1	ENSMUST00000109844.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109842.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109843.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109846.4|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000173539.1|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila) 	ENSMUST00000109841.2|Dlk1|ENSMUSG00000040856.11|delta-like 1 homolog (Drosophila)
mm10_v2_chr17_-_28350600_28350681	0.761844	Gli3_Zic1	ENSMUST00000114799.1|Tead3|ENSMUSG00000002249.11|TEA domain family member 3
mm10_v2_chr11_-_58801944_58801968	0.751895	Gli3_Zic1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr2_-_125723387_125723537	0.733985	Gli3_Zic1	ENSMUST00000042246.7|Shc4|ENSMUSG00000035109.8|SHC (Src homology 2 domain containing) family, member 4
mm10_v2_chr7_-_111779963_111779993	0.707098	Gli3_Zic1	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr3_+_31149934_31149958	0.704825	Gli3_Zic1	ENSMUST00000046174.6|Cldn11|ENSMUSG00000037625.6|claudin 11
mm10_v2_chr9_+_100643605_100643626	0.692899	Gli3_Zic1	ENSMUST00000041418.6|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr14_-_56811716_56811716	0.691786	Gli3_Zic1	ENSMUST00000039812.9|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5 	ENSMUST00000111285.2|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr17_-_15041457_15041559	0.688143	Gli3_Zic1	ENSMUST00000097400.4|Gm3448|ENSMUSG00000079710.3|predicted gene 3448 	ENSMUST00000097398.4|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3 	ENSMUST00000040746.6|Tcte3|ENSMUSG00000079707.3|t-complex-associated testis expressed 3
mm10_v2_chr1_+_135729147_135729234	0.682183	Gli3_Zic1	ENSMUST00000027677.7|Csrp1|ENSMUSG00000026421.8|cysteine and glycine-rich protein 1
mm10_v2_chr9_-_56418023_56418052	0.677697	Gli3_Zic1	ENSMUST00000061552.8|C230081A13Rik|ENSMUSG00000074305.3|RIKEN cDNA C230081A13 gene
mm10_v2_chr4_-_117178726_117178754	0.657669	Gli3_Zic1	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr17_-_34028044_34028076	0.654758	Gli3_Zic1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chrX_-_150812715_150812805	0.652872	Gli3_Zic1	ENSMUST00000112697.3|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chrX_+_73064787_73064787	0.652797	Gli3_Zic1	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr13_+_81783220_81783307	0.651394	Gli3_Zic1	ENSMUST00000022009.8|Cetn3|ENSMUSG00000021537.8|centrin 3
mm10_v2_chr4_+_15265798_15265831	0.635307	Gli3_Zic1	ENSMUST00000062684.8|Tmem64|ENSMUSG00000043252.8|transmembrane protein 64
mm10_v2_chr15_+_102296256_102296330	0.634355	Gli3_Zic1	ENSMUST00000064924.4|Espl1|ENSMUSG00000058290.3|extra spindle poles-like 1 (S. cerevisiae)
mm10_v2_chr11_-_78245942_78245987	0.632162	Gli3_Zic1	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr14_-_54926784_54926805	0.628236	Gli3_Zic1	ENSMUST00000022813.6|Efs|ENSMUSG00000022203.6|embryonal Fyn-associated substrate
mm10_v2_chr12_+_59066908_59066931	0.623293	Gli3_Zic1	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr2_-_77170592_77170645	0.616565	Gli3_Zic1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr15_-_99820072_99820154	0.615756	Gli3_Zic1	ENSMUST00000109024.2|Lima1|ENSMUSG00000023022.7|LIM domain and actin binding 1
mm10_v2_chr9_+_110305185_110305229	0.609378	Gli3_Zic1	ENSMUST00000068071.7|Elp6|ENSMUSG00000054836.8|elongator acetyltransferase complex subunit 6
mm10_v2_chr13_-_63431683_63431733	0.607203	Gli3_Zic1	ENSMUST00000160931.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000099444.3|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000161977.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C 	ENSMUST00000163091.1|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr16_-_85550417_85550432	0.60656	Gli3_Zic1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr4_+_12089373_12089441	0.591549	Gli3_Zic1	ENSMUST00000095143.2|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2 	ENSMUST00000063839.5|Rbm12b2|ENSMUSG00000052137.5|RNA binding motif protein 12 B2
mm10_v2_chr10_-_22149270_22149270	0.590565	Gli3_Zic1	ENSMUST00000179054.1|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene 	ENSMUST00000069372.6|E030030I06Rik|ENSMUSG00000055657.8|RIKEN cDNA E030030I06 gene
mm10_v2_chr7_+_57591147_57591191	0.578862	Gli3_Zic1	ENSMUST00000039697.7|Gabrb3|ENSMUSG00000033676.7|gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
mm10_v2_chr15_+_9071252_9071273	0.577322	Gli3_Zic1	ENSMUST00000100789.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000100790.3|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial 	ENSMUST00000067760.4|Nadk2|ENSMUSG00000022253.8|NAD kinase 2, mitochondrial
mm10_v2_chr7_+_130865756_130865812	0.576878	Gli3_Zic1	ENSMUST00000120441.1|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr2_-_144527341_144527424	0.574219	Gli3_Zic1	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr4_+_48585276_48585365	0.570797	Gli3_Zic1	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr2_-_91931675_91931688	0.568163	Gli3_Zic1	ENSMUST00000111309.1|Mdk|ENSMUSG00000027239.8|midkine
mm10_v2_chr11_+_100415722_100415766	0.565971	Gli3_Zic1	ENSMUST00000107400.2|Fkbp10|ENSMUSG00000001555.4|FK506 binding protein 10
mm10_v2_chr1_-_75505641_75505703	0.56175	Gli3_Zic1	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr8_+_105170668_105170686	0.559739	Gli3_Zic1	ENSMUST00000109395.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109394.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000052209.2|Cbfb|ENSMUSG00000031885.7|core binding factor beta 	ENSMUST00000109392.1|Cbfb|ENSMUSG00000031885.7|core binding factor beta
mm10_v2_chr1_-_69108039_69108064	0.557769	Gli3_Zic1	ENSMUST00000121473.1|Erbb4|ENSMUSG00000062209.9|v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
mm10_v2_chr1_-_128103016_128103053	0.55474	Gli3_Zic1	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr7_-_99626936_99627103	0.550868	Gli3_Zic1	ENSMUST00000178124.1|Gm4980|ENSMUSG00000096606.1|predicted gene 4980
mm10_v2_chr10_+_80016901_80016916	0.54941	Gli3_Zic1	ENSMUST00000105373.1|Hmha1|ENSMUSG00000035697.8|histocompatibility (minor) HA-1
mm10_v2_chr17_-_56874421_56874460	0.526719	Gli3_Zic1	ENSMUST00000043062.4|Acsbg2|ENSMUSG00000024207.8|acyl-CoA synthetase bubblegum family member 2
mm10_v2_chrX_-_141725181_141725263	0.526061	Gli3_Zic1	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr1_-_64121456_64121491	0.52446	Gli3_Zic1	ENSMUST00000142009.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous) 	ENSMUST00000114086.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr4_-_151108454_151108576	0.520491	Gli3_Zic1	ENSMUST00000105670.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chrX_+_10717451_10717491	0.519289	Gli3_Zic1	ENSMUST00000156321.1|Mid1ip1|ENSMUSG00000008035.6|Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
mm10_v2_chr15_-_97844254_97844318	0.5191	Gli3_Zic1	ENSMUST00000119670.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7 	ENSMUST00000116409.2|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr7_-_84605819_84605827	0.515095	Gli3_Zic1	ENSMUST00000032865.9|Fah|ENSMUSG00000030630.9|fumarylacetoacetate hydrolase
mm10_v2_chr15_-_97844164_97844245	0.511346	Gli3_Zic1	ENSMUST00000120683.1|Hdac7|ENSMUSG00000022475.12|histone deacetylase 7
mm10_v2_chr9_+_80067452_80067493	0.508339	Gli3_Zic1	ENSMUST00000165607.2|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chrX_-_150812932_150813154	0.507836	Gli3_Zic1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr14_-_56811464_56811464	0.507217	Gli3_Zic1	ENSMUST00000173954.1|Zmym5|ENSMUSG00000040123.10|zinc finger, MYM-type 5
mm10_v2_chr3_+_27984145_27984314	0.502842	Gli3_Zic1	ENSMUST00000067757.4|Pld1|ENSMUSG00000027695.10|phospholipase D1
mm10_v2_chr10_+_22645011_22645109	0.496889	Gli3_Zic1	ENSMUST00000042261.4|Slc2a12|ENSMUSG00000037490.5|solute carrier family 2 (facilitated glucose transporter), member 12
mm10_v2_chr6_-_101377897_101378016	0.496162	Gli3_Zic1	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr19_-_40271506_40271616	0.492113	Gli3_Zic1	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr13_-_63431737_63431755	0.487192	Gli3_Zic1	ENSMUST00000073029.5|Fancc|ENSMUSG00000021461.10|Fanconi anemia, complementation group C
mm10_v2_chr9_-_58158498_58158554	0.486166	Gli3_Zic1	ENSMUST00000168864.2|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr14_+_70530819_70530847	0.478941	Gli3_Zic1	ENSMUST00000047331.6|Lgi3|ENSMUSG00000033595.6|leucine-rich repeat LGI family, member 3
mm10_v2_chr7_-_19770509_19770547	0.47828	Gli3_Zic1	ENSMUST00000003061.7|Bcam|ENSMUSG00000002980.8|basal cell adhesion molecule
mm10_v2_chr7_-_13034722_13034782	0.468146	Gli3_Zic1	ENSMUST00000005711.4|Chmp2a|ENSMUSG00000033916.4|charged multivesicular body protein 2A
mm10_v2_chr4_+_141213948_141213998	0.467938	Gli3_Zic1	ENSMUST00000097813.2|Rsg1|ENSMUSG00000073733.4|REM2 and RAB-like small GTPase 1
mm10_v2_chr19_-_5106967_5107023	0.465699	Gli3_Zic1	ENSMUST00000025804.5|Rab1b|ENSMUSG00000024870.5|RAB1B, member RAS oncogene family
mm10_v2_chr5_-_123721007_123721062	0.463892	Gli3_Zic1	ENSMUST00000031376.7|Zcchc8|ENSMUSG00000029427.7|zinc finger, CCHC domain containing 8
mm10_v2_chr1_-_135167606_135167681	0.463415	Gli3_Zic1	ENSMUST00000027682.8|Gpr37l1|ENSMUSG00000026424.8|G protein-coupled receptor 37-like 1
mm10_v2_chr7_+_130865835_130865942	0.456351	Gli3_Zic1	ENSMUST00000075181.4|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 	ENSMUST00000048180.5|Plekha1|ENSMUSG00000040268.10|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1
mm10_v2_chr17_+_25727726_25727797	0.453409	Gli3_Zic1	ENSMUST00000047273.1|Rpusd1|ENSMUSG00000041199.2|RNA pseudouridylate synthase domain containing 1
mm10_v2_chr7_+_24370255_24370312	0.450815	Gli3_Zic1	ENSMUST00000171904.1|Kcnn4|ENSMUSG00000054342.7|potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4
mm10_v2_chr11_+_70647258_70647294	0.448129	Gli3_Zic1	ENSMUST00000037534.7|Rnf167|ENSMUSG00000040746.9|ring finger protein 167
mm10_v2_chr13_-_9764943_9764994	0.445982	Gli3_Zic1	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chrX_+_137049586_137049654	0.440721	Gli3_Zic1	ENSMUST00000047852.7|Fam199x|ENSMUSG00000042595.7|family with sequence similarity 199, X-linked
mm10_v2_chr17_+_86963077_86963094	0.43874	Gli3_Zic1	ENSMUST00000024956.8|Rhoq|ENSMUSG00000024143.8|ras homolog gene family, member Q
mm10_v2_chr9_-_54661666_54661716	0.437355	Gli3_Zic1	ENSMUST00000128624.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr1_-_75506331_75506402	0.434371	Gli3_Zic1	ENSMUST00000113567.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1 	ENSMUST00000113565.2|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr11_+_50237002_50237014	0.433374	Gli3_Zic1	ENSMUST00000180443.1|Gm26542|ENSMUSG00000097887.1|predicted gene, 26542
mm10_v2_chr2_-_29253001_29253013	0.433168	Gli3_Zic1	ENSMUST00000071201.4|Ntng2|ENSMUSG00000035513.13|netrin G2
mm10_v2_chr11_-_42000532_42000592	0.42929	Gli3_Zic1	ENSMUST00000070735.3|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chrX_+_101383726_101383741	0.427745	Gli3_Zic1	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chr5_-_137786681_137786715	0.420618	Gli3_Zic1	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr7_+_125603420_125603437	0.42038	Gli3_Zic1	ENSMUST00000033000.6|Il21r|ENSMUSG00000030745.8|interleukin 21 receptor
mm10_v2_chr6_+_125009232_125009253	0.416854	Gli3_Zic1	ENSMUST00000112428.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr8_-_69887687_69887687	0.414797	Gli3_Zic1	ENSMUST00000057831.7|Cilp2|ENSMUSG00000044006.8|cartilage intermediate layer protein 2
mm10_v2_chr9_+_80066895_80066936	0.413539	Gli3_Zic1	ENSMUST00000037484.8|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6 	ENSMUST00000176640.1|Senp6|ENSMUSG00000034252.8|SUMO/sentrin specific peptidase 6
mm10_v2_chr3_-_116253467_116253484	0.411867	Gli3_Zic1	ENSMUST00000090473.5|Gpr88|ENSMUSG00000068696.5|G-protein coupled receptor 88
mm10_v2_chr4_+_48585135_48585187	0.40973	Gli3_Zic1	ENSMUST00000030032.6|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr2_-_39190687_39190746	0.409654	Gli3_Zic1	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr7_+_25267669_25267723	0.406829	Gli3_Zic1	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr16_-_28445227_28445395	0.403634	Gli3_Zic1	ENSMUST00000100024.1|Fgf12|ENSMUSG00000022523.9|fibroblast growth factor 12
mm10_v2_chr7_-_79131018_79131018	0.400254	Gli3_Zic1	ENSMUST00000032827.7|Hapln3|ENSMUSG00000030606.7|hyaluronan and proteoglycan link protein 3
mm10_v2_chr6_+_125009113_125009179	0.399595	Gli3_Zic1	ENSMUST00000054553.4|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr8_+_46492789_46492832	0.397743	Gli3_Zic1	ENSMUST00000110371.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr1_-_56972437_56972502	0.396804	Gli3_Zic1	ENSMUST00000042857.7|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chrX_-_59568068_59568094	0.396211	Gli3_Zic1	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr17_+_35220834_35220834	0.396149	Gli3_Zic1	ENSMUST00000118793.1|Gm16181|ENSMUSG00000081650.1|predicted gene 16181
mm10_v2_chr2_+_181187247_181187347	0.394697	Gli3_Zic1	ENSMUST00000016488.6|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene 	ENSMUST00000108841.1|Ppdpf|ENSMUSG00000016344.8|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)RIKEN cDNA 2700038C09 gene
mm10_v2_chr8_-_105295934_105296098	0.393366	Gli3_Zic1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr11_-_42000284_42000356	0.392157	Gli3_Zic1	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chrX_-_147554050_147554087	0.390383	Gli3_Zic1	ENSMUST00000112819.2|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENSMUST00000136789.1|Lrch2|ENSMUSG00000031290.8|leucine-rich repeats and calponin homology (CH) domain containing 2
mm10_v2_chr16_-_85803106_85803121	0.389	Gli3_Zic1	ENSMUST00000023610.8|Adamts1|ENSMUSG00000022893.8|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1
mm10_v2_chr4_-_154899077_154899135	0.388506	Gli3_Zic1	ENSMUST00000030935.3|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B 	ENSMUST00000132281.1|Fam213b|ENSMUSG00000029059.3|family with sequence similarity 213, member B
mm10_v2_chr6_+_125009261_125009317	0.386457	Gli3_Zic1	ENSMUST00000112427.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr11_+_78245743_78245821	0.381394	Gli3_Zic1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr8_+_54954728_54954820	0.37455	Gli3_Zic1	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr4_+_48045144_48045160	0.373725	Gli3_Zic1	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr4_+_106561027_106561038	0.368952	Gli3_Zic1	ENSMUST00000047973.3|Dhcr24|ENSMUSG00000034926.3|24-dehydrocholesterol reductase
mm10_v2_chr2_-_73529725_73529736	0.361634	Gli3_Zic1	ENSMUST00000094681.4|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr3_+_116007457_116007540	0.35975	Gli3_Zic1	ENSMUST00000029575.5|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2 	ENSMUST00000106501.1|Extl2|ENSMUSG00000027963.8|exostoses (multiple)-like 2
mm10_v2_chr15_+_59315030_59315087	0.356797	Gli3_Zic1	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr15_-_100669496_100669511	0.355718	Gli3_Zic1	ENSMUST00000182814.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182068.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr11_+_115154139_115154194	0.353387	Gli3_Zic1	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr12_+_73997749_73997817	0.351309	Gli3_Zic1	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr11_+_85832551_85832551	0.350854	Gli3_Zic1	ENSMUST00000000095.6|Tbx2|ENSMUSG00000000093.6|T-box 2
mm10_v2_chr2_-_160872985_160873009	0.350133	Gli3_Zic1	ENSMUST00000109460.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3 	ENSMUST00000127201.1|Zhx3|ENSMUSG00000035877.11|zinc fingers and homeoboxes 3
mm10_v2_chr11_-_45955183_45955193	0.344229	Gli3_Zic1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr9_+_77917364_77917386	0.343728	Gli3_Zic1	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr5_+_105519388_105519425	0.34288	Gli3_Zic1	ENSMUST00000067924.6|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C 	ENSMUST00000150981.1|Lrrc8c|ENSMUSG00000054720.6|leucine rich repeat containing 8 family, member C
mm10_v2_chr11_-_61494173_61494296	0.340022	Gli3_Zic1	ENSMUST00000101085.2|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000079080.6|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7 	ENSMUST00000108714.1|Mapk7|ENSMUSG00000001034.11|mitogen-activated protein kinase 7
mm10_v2_chr2_+_156840077_156840141	0.339973	Gli3_Zic1	ENSMUST00000081335.6|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2 	ENSMUST00000073352.3|Tgif2|ENSMUSG00000062175.7|TGFB-induced factor homeobox 2
mm10_v2_chr5_-_138994935_138995037	0.338741	Gli3_Zic1	ENSMUST00000046901.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha 	ENSMUST00000076095.7|Pdgfa|ENSMUSG00000025856.9|platelet derived growth factor, alpha
mm10_v2_chrX_+_161717055_161717073	0.338417	Gli3_Zic1	ENSMUST00000112338.1|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr4_-_62208426_62208487	0.338195	Gli3_Zic1	ENSMUST00000068822.3|Zfp37|ENSMUSG00000028389.4|zinc finger protein 37
mm10_v2_chr8_-_41041828_41041866	0.334831	Gli3_Zic1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr11_+_87760533_87760587	0.334177	Gli3_Zic1	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr17_+_15041641_15041641	0.333446	Gli3_Zic1	ENSMUST00000097393.3|Ermard|ENSMUSG00000036552.10|ER membrane associated RNA degradation
mm10_v2_chr13_+_54575008_54575017	0.332517	Gli3_Zic1	ENSMUST00000026988.4|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr15_-_95528702_95528777	0.332036	Gli3_Zic1	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr17_+_34894515_34894573	0.329007	Gli3_Zic1	ENSMUST00000052778.8|Zbtb12|ENSMUSG00000049823.8|zinc finger and BTB domain containing 12
mm10_v2_chr1_-_165460430_165460487	0.328471	Gli3_Zic1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr7_-_142656018_142656058	0.327444	Gli3_Zic1	ENSMUST00000178921.1|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr16_-_33380717_33380755	0.326277	Gli3_Zic1	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr10_+_22158566_22158586	0.325562	Gli3_Zic1	ENSMUST00000181645.1|Raet1e|ENSMUSG00000053219.9|retinoic acid early transcript 1E 	ENSMUST00000105522.2|H60b|ENSMUSG00000075297.4|histocompatibility 60b
mm10_v2_chr2_-_168230353_168230386	0.322986	Gli3_Zic1	ENSMUST00000154111.1|Dpm1|ENSMUSG00000078919.4|dolichol-phosphate (beta-D) mannosyltransferase 1
mm10_v2_chr10_-_127288999_127289035	0.321684	Gli3_Zic1	ENSMUST00000119078.1|Mbd6|ENSMUSG00000025409.8|methyl-CpG binding domain protein 6
mm10_v2_chr2_+_164879358_164879398	0.321035	Gli3_Zic1	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr9_-_108578657_108578675	0.315316	Gli3_Zic1	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr12_-_32953772_32953846	0.308767	Gli3_Zic1	ENSMUST00000180391.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene 	ENSMUST00000181670.1|4933406C10Rik|ENSMUSG00000097494.1|RIKEN cDNA 4933406C10 gene
mm10_v2_chr11_-_34833631_34833663	0.308693	Gli3_Zic1	ENSMUST00000093191.2|Spdl1|ENSMUSG00000069910.2|spindle apparatus coiled-coil protein 1
mm10_v2_chr9_+_100643448_100643542	0.302699	Gli3_Zic1	ENSMUST00000146312.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1 	ENSMUST00000129269.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr13_+_54575020_54575093	0.300483	Gli3_Zic1	ENSMUST00000156024.1|Arl10|ENSMUSG00000025870.4|ADP-ribosylation factor-like 10
mm10_v2_chr2_-_119477613_119477705	0.296788	Gli3_Zic1	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr17_+_15010266_15010266	0.296206	Gli3_Zic1	ENSMUST00000097395.3|Gm3435|ENSMUSG00000079709.2|predicted gene 3435
mm10_v2_chr1_-_191907527_191907527	0.293916	Gli3_Zic1	ENSMUST00000069573.5|1700034H15Rik|ENSMUSG00000055833.8|RIKEN cDNA 1700034H15 gene
mm10_v2_chr9_+_62858085_62858138	0.293408	Gli3_Zic1	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr11_+_101176041_101176041	0.288515	Gli3_Zic1	ENSMUST00000103109.3|Cntnap1|ENSMUSG00000017167.6|contactin associated protein-like 1
mm10_v2_chr15_-_100669512_100669529	0.282886	Gli3_Zic1	ENSMUST00000182574.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2 	ENSMUST00000182775.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr1_+_128103297_128103311	0.279648	Gli3_Zic1	ENSMUST00000036288.4|R3hdm1|ENSMUSG00000056211.7|R3H domain containing 1
mm10_v2_chr1_-_153900198_153900210	0.274908	Gli3_Zic1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr10_+_40349265_40349387	0.272181	Gli3_Zic1	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr10_+_128706251_128706264	0.268806	Gli3_Zic1	ENSMUST00000054125.8|Pmel|ENSMUSG00000025359.9|premelanosome protein
mm10_v2_chr13_-_9765137_9765321	0.26779	Gli3_Zic1	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr10_-_128804353_128804374	0.266726	Gli3_Zic1	ENSMUST00000051011.7|Tmem198b|ENSMUSG00000047090.7|transmembrane protein 198b
mm10_v2_chr4_+_117096049_117096083	0.265825	Gli3_Zic1	ENSMUST00000030443.5|Ptch2|ENSMUSG00000028681.5|patched homolog 2
mm10_v2_chrX_+_155262443_155262481	0.264149	Gli3_Zic1	ENSMUST00000026324.9|Acot9|ENSMUSG00000025287.9|acyl-CoA thioesterase 9
mm10_v2_chr13_+_108316395_108316422	0.263354	Gli3_Zic1	ENSMUST00000171178.1|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr3_+_79885930_79886002	0.262339	Gli3_Zic1	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr7_+_99535439_99535498	0.262039	Gli3_Zic1	ENSMUST00000098266.2|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1 	ENSMUST00000179755.1|Arrb1|ENSMUSG00000018909.9|arrestin, beta 1
mm10_v2_chr5_-_122264378_122264460	0.260864	Gli3_Zic1	ENSMUST00000111738.3|Tctn1|ENSMUSG00000038593.12|tectonic family member 1
mm10_v2_chr2_+_85037212_85037302	0.259488	Gli3_Zic1	ENSMUST00000077798.6|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr10_+_19951055_19951055	0.259217	Gli3_Zic1	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr2_+_181497165_181497216	0.254884	Gli3_Zic1	ENSMUST00000149163.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000000844.8|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000184849.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000108800.1|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2 	ENSMUST00000069712.2|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chr14_+_55560480_55560533	0.253572	Gli3_Zic1	ENSMUST00000121622.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000143431.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000150481.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr7_-_4778141_4778144	0.246809	Gli3_Zic1	ENSMUST00000094892.5|Il11|ENSMUSG00000004371.8|interleukin 11
mm10_v2_chr11_+_85311232_85311286	0.244101	Gli3_Zic1	ENSMUST00000020835.9|Ppm1d|ENSMUSG00000020525.11|protein phosphatase 1D magnesium-dependent, delta isoform
mm10_v2_chr14_+_45351473_45351473	0.242917	Gli3_Zic1	ENSMUST00000111835.2|Styx|ENSMUSG00000053205.8|serine/threonine/tyrosine interaction protein
mm10_v2_chr4_-_126202757_126202762	0.242001	Gli3_Zic1	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr3_+_95624971_95625021	0.239878	Gli3_Zic1	ENSMUST00000058230.6|Ensa|ENSMUSG00000038619.6|endosulfine alpha 	ENSMUST00000037983.4|Ensa|ENSMUSG00000038619.6|endosulfine alpha
mm10_v2_chr17_+_37045980_37046080	0.239343	Gli3_Zic1	ENSMUST00000174456.1|Gabbr1|ENSMUSG00000024462.11|gamma-aminobutyric acid (GABA) B receptor, 1
mm10_v2_chr17_-_27204357_27204447	0.239095	Gli3_Zic1	ENSMUST00000055117.7|Lemd2|ENSMUSG00000044857.7|LEM domain containing 2
mm10_v2_chr4_-_151108244_151108303	0.236456	Gli3_Zic1	ENSMUST00000131948.1|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr2_+_102658640_102658669	0.234759	Gli3_Zic1	ENSMUST00000080210.3|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr17_+_56304313_56304407	0.232446	Gli3_Zic1	ENSMUST00000113035.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000113039.2|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1 	ENSMUST00000142387.1|Uhrf1|ENSMUSG00000001228.8|ubiquitin-like, containing PHD and RING finger domains, 1
mm10_v2_chr17_-_65772686_65772752	0.230923	Gli3_Zic1	ENSMUST00000070673.7|Rab31|ENSMUSG00000056515.8|RAB31, member RAS oncogene family
mm10_v2_chr13_-_54611274_54611297	0.228777	Gli3_Zic1	ENSMUST00000049575.7|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr4_+_123233556_123233556	0.226852	Gli3_Zic1	ENSMUST00000040821.4|Heyl|ENSMUSG00000032744.4|hairy/enhancer-of-split related with YRPW motif-like
mm10_v2_chrX_+_18162575_18162657	0.22682	Gli3_Zic1	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr9_+_60794468_60794577	0.225725	Gli3_Zic1	ENSMUST00000050183.6|Uaca|ENSMUSG00000034485.9|uveal autoantigen with coiled-coil domains and ankyrin repeats
mm10_v2_chr6_-_119330723_119330800	0.225397	Gli3_Zic1	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr5_-_117319242_117319242	0.223754	Gli3_Zic1	ENSMUST00000100834.1|Gm10399|ENSMUSG00000072688.1|predicted gene 10399
mm10_v2_chr11_+_4135167_4135222	0.218701	Gli3_Zic1	ENSMUST00000003677.4|Rnf215|ENSMUSG00000003581.8|ring finger protein 215 	ENSMUST00000145705.1|Rnf215|ENSMUSG00000003581.8|ring finger protein 215
mm10_v2_chr5_-_34187670_34187749	0.218327	Gli3_Zic1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr19_+_6384395_6384422	0.216935	Gli3_Zic1	ENSMUST00000035269.8|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase 	ENSMUST00000113483.1|Pygm|ENSMUSG00000032648.8|muscle glycogen phosphorylase
mm10_v2_chr15_-_95528228_95528266	0.21652	Gli3_Zic1	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr11_-_69921057_69921085	0.216045	Gli3_Zic1	ENSMUST00000108609.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000108608.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A 	ENSMUST00000164359.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chr6_-_115251839_115251867	0.212941	Gli3_Zic1	ENSMUST00000032462.6|Timp4|ENSMUSG00000030317.6|tissue inhibitor of metalloproteinase 4
mm10_v2_chr2_+_85037448_85037530	0.211562	Gli3_Zic1	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr7_-_142899985_142900014	0.209586	Gli3_Zic1	ENSMUST00000000219.3|Th|ENSMUSG00000000214.4|tyrosine hydroxylase
mm10_v2_chr13_-_23551648_23551672	0.208127	Gli3_Zic1	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chr19_-_6084679_6084693	0.204016	Gli3_Zic1	ENSMUST00000161548.1|Zfpl1|ENSMUSG00000024792.2|zinc finger like protein 1
mm10_v2_chr13_-_54611332_54611387	0.203909	Gli3_Zic1	ENSMUST00000091609.4|Cltb|ENSMUSG00000047547.8|clathrin, light polypeptide (Lcb)
mm10_v2_chr2_+_181497223_181497244	0.196585	Gli3_Zic1	ENSMUST00000108799.3|Tpd52l2|ENSMUSG00000000827.12|tumor protein D52-like 2
mm10_v2_chrX_+_119927196_119927225	0.193189	Gli3_Zic1	ENSMUST00000040961.2|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5 	ENSMUST00000113366.1|Pabpc5|ENSMUSG00000034732.4|poly(A) binding protein, cytoplasmic 5
mm10_v2_chr4_+_131921771_131921771	0.19184	Gli3_Zic1	ENSMUST00000094666.3|Tmem200b|ENSMUSG00000070720.3|transmembrane protein 200B
mm10_v2_chr11_-_109363654_109363654	0.191427	Gli3_Zic1	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr4_+_147940859_147940920	0.188881	Gli3_Zic1	ENSMUST00000103232.1|2510039O18Rik|ENSMUSG00000044496.6|RIKEN cDNA 2510039O18 gene
mm10_v2_chr19_+_8735808_8735864	0.186769	Gli3_Zic1	ENSMUST00000049424.9|Wdr74|ENSMUSG00000042729.9|WD repeat domain 74
mm10_v2_chr5_-_137786651_137786668	0.185199	Gli3_Zic1	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr17_+_24669730_24669752	0.182757	Gli3_Zic1	ENSMUST00000047179.5|Zfp598|ENSMUSG00000041130.9|zinc finger protein 598
mm10_v2_chr4_-_43031429_43031456	0.182747	Gli3_Zic1	ENSMUST00000136326.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr5_+_149411749_149411811	0.180761	Gli3_Zic1	ENSMUST00000093110.5|Medag|ENSMUSG00000029659.10|mesenteric estrogen dependent adipogenesis
mm10_v2_chr8_+_3493135_3493212	0.178633	Gli3_Zic1	ENSMUST00000061508.7|Zfp358|ENSMUSG00000047264.7|zinc finger protein 358
mm10_v2_chr5_-_37824580_37824584	0.175962	Gli3_Zic1	ENSMUST00000063116.9|Msx1|ENSMUSG00000048450.10|msh homeobox 1
mm10_v2_chr7_-_109438998_109439017	0.17414	Gli3_Zic1	ENSMUST00000121378.1|Stk33|ENSMUSG00000031027.9|serine/threonine kinase 33
mm10_v2_chr11_-_45955465_45955494	0.172125	Gli3_Zic1	ENSMUST00000011398.6|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr6_+_125009665_125009805	0.168468	Gli3_Zic1	ENSMUST00000046064.10|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000152752.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000088308.3|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000112425.1|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384 	ENSMUST00000084275.5|Zfp384|ENSMUSG00000038346.12|zinc finger protein 384
mm10_v2_chr1_-_153332724_153332804	0.167418	Gli3_Zic1	ENSMUST00000027752.8|Lamc1|ENSMUSG00000026478.8|laminin, gamma 1
mm10_v2_chr4_+_12140263_12140317	0.165862	Gli3_Zic1	ENSMUST00000050069.2|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1 	ENSMUST00000069128.7|Rbm12b1|ENSMUSG00000046667.8|RNA binding motif protein 12 B1
mm10_v2_chr1_-_93801840_93801945	0.164489	Gli3_Zic1	ENSMUST00000112890.2|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase 	ENSMUST00000027503.7|Dtymk|ENSMUSG00000026281.9|deoxythymidylate kinase
mm10_v2_chr1_-_177796451_177796514	0.162575	Gli3_Zic1	ENSMUST00000016105.8|Adss|ENSMUSG00000015961.8|adenylosuccinate synthetase, non muscle
mm10_v2_chr8_-_90908415_90908415	0.16183	Gli3_Zic1	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr3_-_116007399_116007411	0.161227	Gli3_Zic1	ENSMUST00000067485.3|Slc30a7|ENSMUSG00000054414.3|solute carrier family 30 (zinc transporter), member 7
mm10_v2_chr2_-_156839790_156839892	0.158245	Gli3_Zic1	ENSMUST00000134838.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000137463.1|Gm14230|ENSMUSG00000087179.2|predicted gene 14230 	ENSMUST00000149275.2|Gm14230|ENSMUSG00000087179.2|predicted gene 14230
mm10_v2_chr3_-_106547726_106547802	0.158122	Gli3_Zic1	ENSMUST00000039153.7|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000148269.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000068301.4|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1
mm10_v2_chrX_-_59567348_59567472	0.156928	Gli3_Zic1	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr2_-_180889660_180889715	0.155209	Gli3_Zic1	ENSMUST00000137629.1|Gm14342|ENSMUSG00000086166.1|predicted gene 14342
mm10_v2_chr3_-_106547564_106547592	0.15389	Gli3_Zic1	ENSMUST00000121231.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1 	ENSMUST00000141525.1|Cept1|ENSMUSG00000040774.9|choline/ethanolaminephosphotransferase 1
mm10_v2_chr10_+_127165118_127165225	0.151212	Gli3_Zic1	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr3_-_101110278_101110294	0.150502	Gli3_Zic1	ENSMUST00000102694.3|Ptgfrn|ENSMUSG00000027864.8|prostaglandin F2 receptor negative regulator
mm10_v2_chr1_-_22805994_22806007	0.149761	Gli3_Zic1	ENSMUST00000097808.4|Rims1|ENSMUSG00000041670.9|regulating synaptic membrane exocytosis 1
mm10_v2_chr17_-_74294834_74294883	0.148146	Gli3_Zic1	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr11_+_116030304_116030385	0.146576	Gli3_Zic1	ENSMUST00000021116.5|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila) 	ENSMUST00000106452.1|Unk|ENSMUSG00000020770.7|unkempt homolog (Drosophila)
mm10_v2_chr3_+_105452326_105452365	0.146275	Gli3_Zic1	ENSMUST00000098761.3|Kcnd3|ENSMUSG00000040896.10|potassium voltage-gated channel, Shal-related family, member 3
mm10_v2_chr4_-_137766474_137766501	0.143661	Gli3_Zic1	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr6_-_85502858_85502965	0.142471	Gli3_Zic1	ENSMUST00000161546.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41 	ENSMUST00000161078.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr8_+_5639514_5639584	0.142028	Gli3_Zic1	ENSMUST00000051687.3|Gm1840|ENSMUSG00000043192.3|predicted gene 1840
mm10_v2_chr10_+_126978690_126978749	0.141453	Gli3_Zic1	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr15_-_100669535_100669560	0.141066	Gli3_Zic1	ENSMUST00000183211.1|Bin2|ENSMUSG00000098112.1|bridging integrator 2
mm10_v2_chr5_-_75044562_75044774	0.139538	Gli3_Zic1	ENSMUST00000075452.5|Chic2|ENSMUSG00000029229.7|cysteine-rich hydrophobic domain 2
mm10_v2_chr16_+_20673264_20673420	0.137053	Gli3_Zic1	ENSMUST00000154950.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1 	ENSMUST00000115461.1|Eif4g1|ENSMUSG00000045983.9|eukaryotic translation initiation factor 4, gamma 1
mm10_v2_chr19_+_38481057_38481121	0.134284	Gli3_Zic1	ENSMUST00000182481.1|Plce1|ENSMUSG00000024998.11|phospholipase C, epsilon 1
mm10_v2_chr6_+_43265582_43265681	0.133604	Gli3_Zic1	ENSMUST00000031750.7|Arhgef5|ENSMUSG00000033542.7|Rho guanine nucleotide exchange factor (GEF) 5
mm10_v2_chr11_-_60352869_60352905	0.133161	Gli3_Zic1	ENSMUST00000095254.5|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102683.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093048.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000093046.6|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000064019.8|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken) 	ENSMUST00000102682.4|Tom1l2|ENSMUSG00000000538.12|target of myb1-like 2 (chicken)
mm10_v2_chr17_-_25727364_25727426	0.132201	Gli3_Zic1	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr6_-_118780324_118780324	0.131675	Gli3_Zic1	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr11_+_116280939_116280939	0.130207	Gli3_Zic1	ENSMUST00000055872.2|Galr2|ENSMUSG00000020793.5|galanin receptor 2
mm10_v2_chr9_+_45055166_45055195	0.129345	Gli3_Zic1	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr9_+_45906513_45906569	0.127357	Gli3_Zic1	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr12_+_76370266_76370266	0.124336	Gli3_Zic1	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr11_+_69765970_69766027	0.122396	Gli3_Zic1	ENSMUST00000108642.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4 	ENSMUST00000156932.1|Zbtb4|ENSMUSG00000018750.8|zinc finger and BTB domain containing 4
mm10_v2_chr6_+_91684061_91684132	0.12083	Gli3_Zic1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr5_+_117319258_117319284	0.120619	Gli3_Zic1	ENSMUST00000111967.1|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr4_-_41517326_41517337	0.120292	Gli3_Zic1	ENSMUST00000030152.6|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene 	ENSMUST00000095126.4|1110017D15Rik|ENSMUSG00000028441.6|RIKEN cDNA 1110017D15 gene
mm10_v2_chr10_-_93311073_93311161	0.119402	Gli3_Zic1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr9_-_79793507_79793519	0.119268	Gli3_Zic1	ENSMUST00000120690.1|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr8_+_92674289_92674289	0.11823	Gli3_Zic1	ENSMUST00000034185.6|Irx6|ENSMUSG00000031738.8|Iroquois related homeobox 6 (Drosophila)
mm10_v2_chr11_+_53519725_53519800	0.11625	Gli3_Zic1	ENSMUST00000108987.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000121334.1|Sept8|ENSMUSG00000018398.12|septin 8 	ENSMUST00000117061.1|Sept8|ENSMUSG00000018398.12|septin 8
mm10_v2_chr1_+_125561010_125561095	0.116093	Gli3_Zic1	ENSMUST00000027580.4|Slc35f5|ENSMUSG00000026342.4|solute carrier family 35, member F5
mm10_v2_chr5_+_138995038_138995066	0.114271	Gli3_Zic1	ENSMUST00000100518.2|6330403L08Rik|ENSMUSG00000075585.2|RIKEN cDNA 6330403L08 gene
mm10_v2_chr9_+_86695542_86695542	0.113773	Gli3_Zic1	ENSMUST00000150367.2|A330041J22Rik|ENSMUSG00000087466.2|RIKEN cDNA A330041J22 gene
mm10_v2_chr1_+_36511867_36511903	0.113171	Gli3_Zic1	ENSMUST00000001166.7|Cnnm3|ENSMUSG00000001138.7|cyclin M3 	ENSMUST00000097776.3|Cnnm3|ENSMUSG00000001138.7|cyclin M3
mm10_v2_chr2_-_113848655_113848744	0.11258	Gli3_Zic1	ENSMUST00000102545.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A 	ENSMUST00000110948.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr12_+_32953874_32953891	0.111616	Gli3_Zic1	ENSMUST00000076698.5|Sypl|ENSMUSG00000020570.8|synaptophysin-like protein
mm10_v2_chr19_+_5038826_5038938	0.109082	Gli3_Zic1	ENSMUST00000053705.6|B3gnt1|ENSMUSG00000047379.6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1
mm10_v2_chr12_+_24498570_24498587	0.107906	Gli3_Zic1	ENSMUST00000075954.7|Taf1b|ENSMUSG00000059669.7|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
mm10_v2_chr6_+_48395652_48395688	0.105524	Gli3_Zic1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr11_+_75655873_75655918	0.105082	Gli3_Zic1	ENSMUST00000108431.2|Myo1c|ENSMUSG00000017774.13|myosin IC
mm10_v2_chr5_+_135887905_135887923	0.10453	Gli3_Zic1	ENSMUST00000005077.6|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr17_+_85613432_85613608	0.103041	Gli3_Zic1	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr15_+_82147238_82147275	0.0998631	Gli3_Zic1	ENSMUST00000023100.6|Srebf2|ENSMUSG00000022463.7|sterol regulatory element binding factor 2
mm10_v2_chr16_-_96082389_96082481	0.0971594	Gli3_Zic1	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr13_+_34162953_34163033	0.093084	Gli3_Zic1	ENSMUST00000124996.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4 	ENSMUST00000147632.1|Psmg4|ENSMUSG00000071451.3|proteasome (prosome, macropain) assembly chaperone 4
mm10_v2_chr2_-_113848601_113848615	0.0911401	Gli3_Zic1	ENSMUST00000110949.2|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr9_-_79793378_79793430	0.0908469	Gli3_Zic1	ENSMUST00000034878.5|Tmem30a|ENSMUSG00000032328.6|transmembrane protein 30A
mm10_v2_chr6_-_35539765_35539888	0.0883918	Gli3_Zic1	ENSMUST00000031866.5|Mtpn|ENSMUSG00000029840.5|myotrophin
mm10_v2_chr15_+_99392882_99392903	0.0880144	Gli3_Zic1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr1_-_65051119_65051150	0.087132	Gli3_Zic1	ENSMUST00000161960.1|Cryge|ENSMUSG00000070870.6|crystallin, gamma E 	ENSMUST00000087359.5|Cryge|ENSMUSG00000070870.6|crystallin, gamma E
mm10_v2_chr6_-_41636389_41636409	0.0845676	Gli3_Zic1	ENSMUST00000031902.5|Trpv6|ENSMUSG00000029868.8|transient receptor potential cation channel, subfamily V, member 6
mm10_v2_chr1_+_131827977_131828019	0.0786008	Gli3_Zic1	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chrX_-_8193387_8193512	0.0728523	Gli3_Zic1	ENSMUST00000143223.1|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein 	ENSMUST00000033509.8|Ebp|ENSMUSG00000031168.8|phenylalkylamine Ca2+ antagonist (emopamil) binding protein
mm10_v2_chr5_+_3803160_3803193	0.0725111	Gli3_Zic1	ENSMUST00000171023.1|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing 	ENSMUST00000080085.4|Krit1|ENSMUSG00000000600.9|KRIT1, ankyrin repeat containing
mm10_v2_chr17_-_23599487_23599547	0.0720343	Gli3_Zic1	ENSMUST00000057029.4|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr7_-_140116395_140116476	0.0719017	Gli3_Zic1	ENSMUST00000026538.6|Echs1|ENSMUSG00000025465.6|enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
mm10_v2_chr6_+_48395586_48395646	0.0697077	Gli3_Zic1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr9_-_114564315_114564369	0.0693895	Gli3_Zic1	ENSMUST00000111816.2|Trim71|ENSMUSG00000079259.2|tripartite motif-containing 71
mm10_v2_chr5_+_67306941_67306977	0.0685462	Gli3_Zic1	ENSMUST00000162372.1|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9 	ENSMUST00000113676.2|Slc30a9|ENSMUSG00000029221.9|solute carrier family 30 (zinc transporter), member 9
mm10_v2_chr5_-_21055880_21055961	0.0658451	Gli3_Zic1	ENSMUST00000030556.7|Ptpn12|ENSMUSG00000028771.7|protein tyrosine phosphatase, non-receptor type 12
mm10_v2_chr8_+_83608175_83608198	0.0655627	Gli3_Zic1	ENSMUST00000005620.8|Dnajb1|ENSMUSG00000005483.9|DnaJ (Hsp40) homolog, subfamily B, member 1
mm10_v2_chr10_+_40629987_40630053	0.0641795	Gli3_Zic1	ENSMUST00000019977.7|Ddo|ENSMUSG00000063428.7|D-aspartate oxidase
mm10_v2_chr15_+_78428650_78428671	0.0639258	Gli3_Zic1	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr11_-_98149551_98149621	0.0636296	Gli3_Zic1	ENSMUST00000103143.3|Fbxl20|ENSMUSG00000020883.12|F-box and leucine-rich repeat protein 20
mm10_v2_chr12_+_3365108_3365142	0.0632221	Gli3_Zic1	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr1_+_97770158_97770209	0.0616783	Gli3_Zic1	ENSMUST00000112844.3|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000112842.1|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1 	ENSMUST00000027571.6|Gin1|ENSMUSG00000026333.8|gypsy retrotransposon integrase 1
mm10_v2_chr7_-_80401707_80401754	0.0609552	Gli3_Zic1	ENSMUST00000120753.1|Furin|ENSMUSG00000030530.9|furin (paired basic amino acid cleaving enzyme)
mm10_v2_chr8_-_71723308_71723357	0.0605272	Gli3_Zic1	ENSMUST00000125092.1|Fcho1|ENSMUSG00000070000.7|FCH domain only 1
mm10_v2_chr7_+_128246953_128246993	0.0603691	Gli3_Zic1	ENSMUST00000167965.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr5_+_3343893_3343945	0.0535832	Gli3_Zic1	ENSMUST00000165117.1|Cdk6|ENSMUSG00000040274.5|cyclin-dependent kinase 6
mm10_v2_chr7_-_114636299_114636357	0.05309	Gli3_Zic1	ENSMUST00000032906.4|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha 	ENSMUST00000032907.7|Calca|ENSMUSG00000030669.7|calcitonin/calcitonin-related polypeptide, alpha
mm10_v2_chr6_-_85502980_85503034	0.0525038	Gli3_Zic1	ENSMUST00000159062.1|Fbxo41|ENSMUSG00000047013.9|F-box protein 41
mm10_v2_chr3_-_45378206_45378260	0.0524281	Gli3_Zic1	ENSMUST00000181047.1|2610316D01Rik|ENSMUSG00000097040.1|RIKEN cDNA 2610316D01 gene
mm10_v2_chr6_-_142702259_142702290	0.0456437	Gli3_Zic1	ENSMUST00000073173.5|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000111771.1|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000087527.4|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9 	ENSMUST00000100827.2|Abcc9|ENSMUSG00000030249.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 9
mm10_v2_chr7_-_19665005_19665030	0.0445934	Gli3_Zic1	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chr11_-_96824008_96824159	0.0420402	Gli3_Zic1	ENSMUST00000142065.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000167110.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000169828.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1 	ENSMUST00000126949.1|Nfe2l1|ENSMUSG00000038615.11|nuclear factor, erythroid derived 2,-like 1
mm10_v2_chr4_-_40948196_40948296	0.0393188	Gli3_Zic1	ENSMUST00000030125.4|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1 	ENSMUST00000108089.1|Bag1|ENSMUSG00000028416.5|BCL2-associated athanogene 1
mm10_v2_chr17_+_35135196_35135243	0.0389466	Gli3_Zic1	ENSMUST00000172571.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173491.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr7_-_44306903_44306959	0.0384172	Gli3_Zic1	ENSMUST00000004587.9|Clec11a|ENSMUSG00000004473.9|C-type lectin domain family 11, member a
mm10_v2_chr17_+_34039437_34039481	0.0366019	Gli3_Zic1	ENSMUST00000131134.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000087497.4|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114255.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2 	ENSMUST00000114252.1|Col11a2|ENSMUSG00000024330.10|collagen, type XI, alpha 2
mm10_v2_chr4_-_110292719_110292732	0.0352356	Gli3_Zic1	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr2_+_174330006_174330126	0.0347058	Gli3_Zic1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr9_+_118506226_118506318	0.0327244	Gli3_Zic1	ENSMUST00000084820.4|Golga4|ENSMUSG00000038708.9|golgi autoantigen, golgin subfamily a, 4
mm10_v2_chr8_+_11728105_11728143	0.0326604	Gli3_Zic1	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr9_+_31386187_31386235	0.0314413	Gli3_Zic1	ENSMUST00000086167.5|Nfrkb|ENSMUSG00000042185.7|nuclear factor related to kappa B binding protein
mm10_v2_chr4_-_70534904_70534987	0.0308595	Gli3_Zic1	ENSMUST00000107359.2|Megf9|ENSMUSG00000039270.3|multiple EGF-like-domains 9
mm10_v2_chr14_-_62761112_62761145	0.0302858	Gli3_Zic1	ENSMUST00000053959.6|Ints6|ENSMUSG00000035161.6|integrator complex subunit 6
mm10_v2_chr16_-_30550560_30550594	0.0298587	Gli3_Zic1	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr7_-_80340152_80340210	0.0288498	Gli3_Zic1	ENSMUST00000133728.1|Unc45a|ENSMUSG00000030533.9|unc-45 homolog A (C. elegans)
mm10_v2_chr7_+_127485221_127485221	0.0279256	Gli3_Zic1	ENSMUST00000048896.6|Fbrs|ENSMUSG00000042423.7|fibrosin
mm10_v2_chr8_-_85080679_85080746	0.0262537	Gli3_Zic1	ENSMUST00000093357.5|Wdr83|ENSMUSG00000005150.10|WD repeat domain containing 83
mm10_v2_chr11_+_51619731_51619813	0.0258932	Gli3_Zic1	ENSMUST00000127405.1|Nhp2|ENSMUSG00000001056.3|NHP2 ribonucleoprotein
mm10_v2_chr8_+_13757663_13757714	0.0232439	Gli3_Zic1	ENSMUST00000043962.8|Cdc16|ENSMUSG00000038416.8|CDC16 cell division cycle 16
mm10_v2_chr7_+_83891983_83892033	0.0223059	Gli3_Zic1	ENSMUST00000094215.3|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2 	ENSMUST00000130103.1|Mesdc2|ENSMUSG00000038503.8|mesoderm development candidate 2
mm10_v2_chr17_+_24718088_24718118	0.0219911	Gli3_Zic1	ENSMUST00000152407.1|Rps2|ENSMUSG00000044533.9|ribosomal protein S2
mm10_v2_chr6_+_30738044_30738059	0.02193	Gli3_Zic1	ENSMUST00000128398.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000163949.2|Mest|ENSMUSG00000051855.9|mesoderm specific transcript 	ENSMUST00000124665.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr15_+_75969287_75969312	0.0218191	Gli3_Zic1	ENSMUST00000147641.1|Zfp707|ENSMUSG00000034429.8|zinc finger protein 707
mm10_v2_chr5_+_135887988_135888018	0.0207867	Gli3_Zic1	ENSMUST00000111155.1|Hspb1|ENSMUSG00000004951.10|heat shock protein 1
mm10_v2_chr10_+_127041931_127041972	0.0182281	Gli3_Zic1	ENSMUST00000006915.7|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1 	ENSMUST00000120542.1|Mettl1|ENSMUSG00000006732.8|methyltransferase like 1
mm10_v2_chr8_-_107096510_107096562	0.0170347	Gli3_Zic1	ENSMUST00000068388.8|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000133925.1|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000068421.6|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2 	ENSMUST00000116425.2|Terf2|ENSMUSG00000031921.11|telomeric repeat binding factor 2
mm10_v2_chr17_+_35135174_35135181	0.0162417	Gli3_Zic1	ENSMUST00000166426.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000025250.7|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr16_-_32247152_32247179	0.0159341	Gli3_Zic1	ENSMUST00000042732.5|Fbxo45|ENSMUSG00000035764.5|F-box protein 45
mm10_v2_chr5_+_115506668_115506808	0.0148935	Gli3_Zic1	ENSMUST00000067268.8|Pxn|ENSMUSG00000029528.11|paxillin 	ENSMUST00000086523.3|Pxn|ENSMUSG00000029528.11|paxillin
mm10_v2_chr12_-_80436571_80436603	0.0147355	Gli3_Zic1	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr12_-_101083653_101083717	0.0147045	Gli3_Zic1	ENSMUST00000048305.8|Smek1|ENSMUSG00000041846.8|SMEK homolog 1, suppressor of mek1 (Dictyostelium) 	ENSMUST00000163095.1|Smek1|ENSMUSG00000041846.8|SMEK homolog 1, suppressor of mek1 (Dictyostelium)
mm10_v2_chr1_+_191906743_191906767	0.0141203	Gli3_Zic1	ENSMUST00000044954.6|Slc30a1|ENSMUSG00000037434.7|solute carrier family 30 (zinc transporter), member 1
mm10_v2_chr3_-_95357156_95357211	0.0129707	Gli3_Zic1	ENSMUST00000107171.3|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000015841.5|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1 	ENSMUST00000107170.2|Setdb1|ENSMUSG00000015697.8|SET domain, bifurcated 1
mm10_v2_chr7_-_6331235_6331290	0.0122896	Gli3_Zic1	ENSMUST00000127658.1|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583 	ENSMUST00000062765.7|Zfp583|ENSMUSG00000030443.10|zinc finger protein 583
mm10_v2_chr3_-_89245005_89245031	0.01103	Gli3_Zic1	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr5_+_117319292_117319326	0.00982297	Gli3_Zic1	ENSMUST00000086464.4|Vsig10|ENSMUSG00000066894.8|V-set and immunoglobulin domain containing 10
mm10_v2_chr7_+_65693417_65693446	0.00958603	Gli3_Zic1	ENSMUST00000032726.7|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3 	ENSMUST00000107495.3|Tm2d3|ENSMUSG00000078681.4|TM2 domain containing 3
mm10_v2_chr4_-_43031370_43031427	0.00937037	Gli3_Zic1	ENSMUST00000138030.1|Stoml2|ENSMUSG00000028455.9|stomatin (Epb7.2)-like 2
mm10_v2_chr1_+_17601893_17601913	0.00802952	Gli3_Zic1	ENSMUST00000088476.2|Pi15|ENSMUSG00000067780.2|peptidase inhibitor 15
mm10_v2_chr17_-_24209377_24209416	0.00792696	Gli3_Zic1	ENSMUST00000024931.4|Ntn3|ENSMUSG00000079662.1|netrin 3
mm10_v2_chr19_-_4698315_4698315	0.00408704	Gli3_Zic1	ENSMUST00000096325.3|Gm960|ENSMUSG00000071691.4|predicted gene 960
mm10_v2_chr13_-_14613017_14613056	0.00263844	Gli3_Zic1	ENSMUST00000015816.3|Mrpl32|ENSMUSG00000015672.3|mitochondrial ribosomal protein L32
mm10_v2_chr18_-_38918642_38918771	0.0020484	Gli3_Zic1	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr17_+_25366550_25366550	0.00106566	Gli3_Zic1	ENSMUST00000069616.7|Tpsb2|ENSMUSG00000033825.9|tryptase beta 2
