mm10_v2_chr10_+_81628702_81628719	3.44766	Hoxa1	ENSMUST00000129622.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr4_-_143299498_143299564	3.26097	Hoxa1	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr9_+_15239045_15239155	2.6753	Hoxa1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr10_+_81628570_81628635	2.18514	Hoxa1	ENSMUST00000153573.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24 	ENSMUST00000119336.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr2_+_158375638_158375721	2.02055	Hoxa1	ENSMUST00000109488.1|Snhg11|ENSMUSG00000044349.9|small nucleolar RNA host gene 11
mm10_v2_chr17_-_25081138_25081201	1.95543	Hoxa1	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr6_-_136875794_136875811	1.47574	Hoxa1	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr14_-_103844173_103844198	1.42941	Hoxa1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr8_-_11312731_11312826	1.40344	Hoxa1	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr16_+_38902305_38902316	1.3959	Hoxa1	ENSMUST00000023478.7|Igsf11|ENSMUSG00000022790.7|immunoglobulin superfamily, member 11
mm10_v2_chrX_+_56454871_56454887	1.32833	Hoxa1	ENSMUST00000039374.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 	ENSMUST00000101553.2|Ddx26b|ENSMUSG00000035967.9|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B
mm10_v2_chr13_+_31806627_31806650	1.0285	Hoxa1	ENSMUST00000062292.2|Foxc1|ENSMUSG00000050295.2|forkhead box C1
mm10_v2_chr13_-_12340723_12340760	1.0181	Hoxa1	ENSMUST00000168193.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000110616.1|Actn2|ENSMUSG00000052374.8|actinin alpha 2 	ENSMUST00000064204.7|Actn2|ENSMUSG00000052374.8|actinin alpha 2
mm10_v2_chr9_+_65890237_65890343	0.90481	Hoxa1	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr13_-_60177357_60177373	0.818027	Hoxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr4_-_143299463_143299482	0.792674	Hoxa1	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr10_+_79988584_79988683	0.767775	Hoxa1	ENSMUST00000004784.4|Cnn2|ENSMUSG00000004665.4|calponin 2 	ENSMUST00000105374.1|Cnn2|ENSMUSG00000004665.4|calponin 2
mm10_v2_chr2_+_36230426_36230491	0.71614	Hoxa1	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr10_+_67185730_67185768	0.691749	Hoxa1	ENSMUST00000173689.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr3_+_114030532_114030571	0.594951	Hoxa1	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr13_-_103764502_103764505	0.524008	Hoxa1	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr5_-_107289561_107289637	0.509635	Hoxa1	ENSMUST00000031224.8|Tgfbr3|ENSMUSG00000029287.8|transforming growth factor, beta receptor III
mm10_v2_chr9_+_113930934_113930987	0.492069	Hoxa1	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr10_+_75037291_75037332	0.486436	Hoxa1	ENSMUST00000139384.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr8_-_105484350_105484350	0.471149	Hoxa1	ENSMUST00000044286.5|Zdhhc1|ENSMUSG00000039199.5|zinc finger, DHHC domain containing 1
mm10_v2_chr1_-_45503282_45503282	0.469993	Hoxa1	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr9_+_58129062_58129088	0.38642	Hoxa1	ENSMUST00000085677.2|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr4_+_138775735_138775784	0.385449	Hoxa1	ENSMUST00000030528.2|Pla2g2d|ENSMUSG00000041202.6|phospholipase A2, group IID
mm10_v2_chr9_+_58129321_58129349	0.373936	Hoxa1	ENSMUST00000034880.3|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr14_+_70077375_70077445	0.315532	Hoxa1	ENSMUST00000035908.1|Egr3|ENSMUSG00000033730.3|early growth response 3
mm10_v2_chr1_+_10993452_10993478	0.315004	Hoxa1	ENSMUST00000027056.5|Prex2|ENSMUSG00000048960.7|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2
mm10_v2_chr2_-_69885557_69885630	0.314932	Hoxa1	ENSMUST00000060447.6|Mettl5|ENSMUSG00000051730.9|methyltransferase like 5
mm10_v2_chr2_-_26246707_26246707	0.310333	Hoxa1	ENSMUST00000166349.1|C030048H21Rik|ENSMUSG00000090340.1|RIKEN cDNA C030048H21 gene
mm10_v2_chr3_-_110143937_110144011	0.309072	Hoxa1	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr17_-_90455872_90456026	0.291613	Hoxa1	ENSMUST00000174337.1|Nrxn1|ENSMUSG00000024109.12|neurexin I 	ENSMUST00000172466.1|Nrxn1|ENSMUSG00000024109.12|neurexin I
mm10_v2_chr10_+_81628540_81628567	0.280786	Hoxa1	ENSMUST00000123896.1|Ankrd24|ENSMUSG00000054708.11|ankyrin repeat domain 24
mm10_v2_chr6_+_48395652_48395688	0.279142	Hoxa1	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr7_-_127708886_127708933	0.276733	Hoxa1	ENSMUST00000061468.8|Bcl7c|ENSMUSG00000030814.11|B cell CLL/lymphoma 7C
mm10_v2_chr6_+_48395586_48395646	0.272657	Hoxa1	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr8_-_117673682_117673701	0.258627	Hoxa1	ENSMUST00000173522.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1 	ENSMUST00000174450.1|Sdr42e1|ENSMUSG00000034308.7|short chain dehydrogenase/reductase family 42E, member 1
mm10_v2_chr3_+_98013503_98013547	0.252335	Hoxa1	ENSMUST00000079812.6|Notch2|ENSMUSG00000027878.10|notch 2
mm10_v2_chr1_+_153874335_153874354	0.237288	Hoxa1	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr18_+_4994600_4994623	0.236843	Hoxa1	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chrX_+_110814390_110814413	0.212387	Hoxa1	ENSMUST00000078229.3|Pou3f4|ENSMUSG00000056854.3|POU domain, class 3, transcription factor 4
mm10_v2_chr7_+_144838590_144838614	0.211293	Hoxa1	ENSMUST00000105898.1|Fgf3|ENSMUSG00000031074.8|fibroblast growth factor 3
mm10_v2_chr2_+_163225363_163225469	0.205465	Hoxa1	ENSMUST00000099110.3|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2 	ENSMUST00000165937.1|Tox2|ENSMUSG00000074607.5|TOX high mobility group box family member 2
mm10_v2_chr5_+_42067960_42067960	0.195766	Hoxa1	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr5_-_123749393_123749418	0.18398	Hoxa1	ENSMUST00000057795.5|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000111515.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182309.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr14_+_56575603_56575633	0.18072	Hoxa1	ENSMUST00000161553.1|Parp4|ENSMUSG00000054509.7|poly (ADP-ribose) polymerase family, member 4
mm10_v2_chrX_-_75578188_75578247	0.173042	Hoxa1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr9_-_31464238_31464252	0.166264	Hoxa1	ENSMUST00000048050.7|Tmem45b|ENSMUSG00000041737.7|transmembrane protein 45b
mm10_v2_chr1_-_119053619_119053638	0.164183	Hoxa1	ENSMUST00000062483.8|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr5_-_123749371_123749391	0.16005	Hoxa1	ENSMUST00000182955.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000182489.1|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2 	ENSMUST00000050827.7|Rsrc2|ENSMUSG00000029422.8|arginine/serine-rich coiled-coil 2
mm10_v2_chr2_-_152951688_152951700	0.152473	Hoxa1	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr5_+_137030275_137030295	0.148754	Hoxa1	ENSMUST00000041543.8|Vgf|ENSMUSG00000037428.8|VGF nerve growth factor inducible
mm10_v2_chrX_-_150812932_150813154	0.139005	Hoxa1	ENSMUST00000131241.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000147152.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000143843.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr4_-_11981265_11981265	0.138769	Hoxa1	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chrX_-_150813637_150813712	0.121562	Hoxa1	ENSMUST00000112700.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr11_+_62281457_62281495	0.121038	Hoxa1	ENSMUST00000101075.4|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19 	ENSMUST00000050646.6|Ttc19|ENSMUSG00000042298.12|tetratricopeptide repeat domain 19
mm10_v2_chr13_+_72628802_72628825	0.110564	Hoxa1	ENSMUST00000074372.4|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr16_+_18877037_18877241	0.10489	Hoxa1	ENSMUST00000120532.1|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae) 	ENSMUST00000004222.7|Hira|ENSMUSG00000022702.9|histone cell cycle regulation defective homolog A (S. cerevisiae)
mm10_v2_chr10_-_78352469_78352515	0.0919595	Hoxa1	ENSMUST00000138035.1|Agpat3|ENSMUSG00000001211.8|1-acylglycerol-3-phosphate O-acyltransferase 3
mm10_v2_chr4_-_108406676_108406745	0.0881758	Hoxa1	ENSMUST00000184609.1|Gpx7|ENSMUSG00000028597.11|glutathione peroxidase 7
mm10_v2_chr16_-_18876655_18876767	0.0876769	Hoxa1	ENSMUST00000023391.8|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr2_+_165595009_165595080	0.0827211	Hoxa1	ENSMUST00000088132.6|Eya2|ENSMUSG00000017897.12|eyes absent 2 homolog (Drosophila)
mm10_v2_chr10_+_14523062_14523065	0.081687	Hoxa1	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr5_-_135573036_135573051	0.0798235	Hoxa1	ENSMUST00000004936.6|Ccl24|ENSMUSG00000004814.7|chemokine (C-C motif) ligand 24
mm10_v2_chr2_-_131043088_131043088	0.0742521	Hoxa1	ENSMUST00000110240.3|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000066958.4|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110235.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr11_-_20332654_20332688	0.0722987	Hoxa1	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr10_-_92162753_92162765	0.0709585	Hoxa1	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr9_-_101034857_101034877	0.0637764	Hoxa1	ENSMUST00000142676.1|Pccb|ENSMUSG00000032527.7|propionyl Coenzyme A carboxylase, beta polypeptide 	ENSMUST00000149322.1|Pccb|ENSMUSG00000032527.7|propionyl Coenzyme A carboxylase, beta polypeptide
mm10_v2_chr11_+_103774150_103774193	0.0599976	Hoxa1	ENSMUST00000000127.5|Wnt3|ENSMUSG00000000125.5|wingless-related MMTV integration site 3
mm10_v2_chr16_-_18876522_18876570	0.0561856	Hoxa1	ENSMUST00000119273.1|Mrpl40|ENSMUSG00000022706.9|mitochondrial ribosomal protein L40
mm10_v2_chr5_+_135369942_135369997	0.0546563	Hoxa1	ENSMUST00000000940.8|Nsun5|ENSMUSG00000000916.9|NOL1/NOP2/Sun domain family, member 5
mm10_v2_chr7_+_119690026_119690026	0.0531798	Hoxa1	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr3_+_58525821_58525821	0.0468439	Hoxa1	ENSMUST00000029387.8|Eif2a|ENSMUSG00000027810.8|eukaryotic translation initiation factor 2A
mm10_v2_chr11_-_102296618_102296681	0.0466747	Hoxa1	ENSMUST00000107132.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3 	ENSMUST00000073234.2|Atxn7l3|ENSMUSG00000059995.6|ataxin 7-like 3
mm10_v2_chr9_+_58129476_58129501	0.0437547	Hoxa1	ENSMUST00000133287.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr2_-_131042682_131042682	0.0436456	Hoxa1	ENSMUST00000028787.5|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110239.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4 	ENSMUST00000110234.1|Gfra4|ENSMUSG00000027316.9|glial cell line derived neurotrophic factor family receptor alpha 4
mm10_v2_chr1_-_119053339_119053370	0.0405059	Hoxa1	ENSMUST00000161301.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000161451.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2 	ENSMUST00000162607.1|Gli2|ENSMUSG00000048402.8|GLI-Kruppel family member GLI2
mm10_v2_chr6_+_91684061_91684132	0.0315834	Hoxa1	ENSMUST00000032185.7|Slc6a6|ENSMUSG00000030096.7|solute carrier family 6 (neurotransmitter transporter, taurine), member 6
mm10_v2_chr13_+_72628831_72628971	0.0184713	Hoxa1	ENSMUST00000169028.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr5_-_137684665_137684729	0.0120527	Hoxa1	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr9_+_59589288_59589353	0.00842487	Hoxa1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr2_-_148045891_148045948	0.0083927	Hoxa1	ENSMUST00000109964.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr8_+_95825353_95825354	0.00788256	Hoxa1	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
