mm10_v2_chr8_+_118283719_118283738	2.6219	Hoxc9	ENSMUST00000117160.1|Cdh13|ENSMUSG00000031841.12|cadherin 13
mm10_v2_chr6_-_99044414_99044459	2.55003	Hoxc9	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr3_+_67892189_67892226	2.45868	Hoxc9	ENSMUST00000063263.3|Iqcj|ENSMUSG00000051777.4|IQ motif containing J
mm10_v2_chr15_-_48791933_48792063	0.823035	Hoxc9	ENSMUST00000160658.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000100670.3|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3 	ENSMUST00000162830.1|Csmd3|ENSMUSG00000022311.9|CUB and Sushi multiple domains 3
mm10_v2_chr18_+_65582281_65582310	0.706037	Hoxc9	ENSMUST00000183319.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr19_+_24875679_24875689	0.67252	Hoxc9	ENSMUST00000073080.5|Gm10053|ENSMUSG00000058927.5|predicted gene 10053
mm10_v2_chrX_-_143933089_143933142	0.660561	Hoxc9	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr1_+_66321708_66321719	0.65142	Hoxc9	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr4_+_100776664_100776692	0.625619	Hoxc9	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr13_-_25270076_25270094	0.613362	Hoxc9	ENSMUST00000057866.6|Nrsn1|ENSMUSG00000048978.7|neurensin 1
mm10_v2_chr18_+_65582239_65582275	0.590635	Hoxc9	ENSMUST00000182684.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr7_-_30612731_30612744	0.575157	Hoxc9	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr18_-_56975333_56975376	0.553895	Hoxc9	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chrX_+_56609751_56609797	0.545398	Hoxc9	ENSMUST00000144068.1|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chrX_-_105928547_105928583	0.501632	Hoxc9	ENSMUST00000101305.2|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr8_-_120228221_120228297	0.495994	Hoxc9	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chr12_-_15816762_15816881	0.470081	Hoxc9	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr9_+_53771499_53771535	0.457632	Hoxc9	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr1_+_187997821_187997834	0.450839	Hoxc9	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr5_+_67260696_67260711	0.44239	Hoxc9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr1_+_187997835_187997882	0.42504	Hoxc9	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr9_+_35423582_35423589	0.40221	Hoxc9	ENSMUST00000154652.1|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr11_-_72215592_72215592	0.338594	Hoxc9	ENSMUST00000021157.8|Med31|ENSMUSG00000020801.8|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm10_v2_chr6_+_54269135_54269161	0.336338	Hoxc9	ENSMUST00000114401.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chrX_-_141474034_141474091	0.325949	Hoxc9	ENSMUST00000101205.2|Col4a6|ENSMUSG00000031273.10|collagen, type IV, alpha 6
mm10_v2_chr4_-_150003130_150003149	0.301582	Hoxc9	ENSMUST00000084117.6|H6pd|ENSMUSG00000028980.8|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm10_v2_chr10_-_88605017_88605152	0.296474	Hoxc9	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr11_+_85353156_85353219	0.292805	Hoxc9	ENSMUST00000108061.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108062.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108056.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000138423.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000074875.4|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000092821.3|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3
mm10_v2_chr2_-_84650714_84650749	0.275468	Hoxc9	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_-_84650490_84650544	0.254249	Hoxc9	ENSMUST00000066177.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr10_+_128411616_128411676	0.242591	Hoxc9	ENSMUST00000096386.5|Rnf41|ENSMUSG00000025373.7|ring finger protein 41 	ENSMUST00000171342.1|Rnf41|ENSMUSG00000025373.7|ring finger protein 41
mm10_v2_chr19_-_10880370_10880411	0.224417	Hoxc9	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr2_-_84650676_84650687	0.219221	Hoxc9	ENSMUST00000067232.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chrX_-_143933204_143933311	0.215776	Hoxc9	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr2_-_84650760_84650771	0.191629	Hoxc9	ENSMUST00000111691.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chrX_+_56609843_56609864	0.173389	Hoxc9	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr18_+_65582390_65582613	0.170117	Hoxc9	ENSMUST00000169679.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183326.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr10_+_43524080_43524102	0.168181	Hoxc9	ENSMUST00000057649.6|Gm9803|ENSMUSG00000045886.6|predicted gene 9803
mm10_v2_chr10_-_61979073_61979108	0.167626	Hoxc9	ENSMUST00000105453.1|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105452.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1 	ENSMUST00000105454.2|Col13a1|ENSMUSG00000058806.8|collagen, type XIII, alpha 1
mm10_v2_chr9_-_7835255_7835255	0.158832	Hoxc9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
mm10_v2_chr5_+_67260565_67260692	0.154429	Hoxc9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr5_-_67427794_67427813	0.147159	Hoxc9	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr5_-_44101668_44101745	0.144925	Hoxc9	ENSMUST00000087441.4|Prom1|ENSMUSG00000029086.9|prominin 1 	ENSMUST00000074113.6|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr2_-_91255995_91256047	0.140903	Hoxc9	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr12_-_8499985_8500017	0.135751	Hoxc9	ENSMUST00000067384.4|Rhob|ENSMUSG00000054364.4|ras homolog gene family, member B
mm10_v2_chr10_-_92162753_92162765	0.128264	Hoxc9	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chrX_-_103186618_103186671	0.116343	Hoxc9	ENSMUST00000121720.1|Nap1l2|ENSMUSG00000082229.1|nucleosome assembly protein 1-like 2
mm10_v2_chr9_+_121710389_121710422	0.10906	Hoxc9	ENSMUST00000035113.9|Deb1|ENSMUSG00000032526.10|differentially expressed in B16F10 1
mm10_v2_chr1_+_85100164_85100164	0.065295	Hoxc9	ENSMUST00000097669.1|Gm10553|ENSMUSG00000073631.1|predicted gene 10553
mm10_v2_chr8_+_54954728_54954820	0.0619399	Hoxc9	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr1_+_11414089_11414146	0.0531549	Hoxc9	ENSMUST00000048613.7|A830018L16Rik|ENSMUSG00000057715.7|RIKEN cDNA A830018L16 gene 	ENSMUST00000171690.2|A830018L16Rik|ENSMUSG00000057715.7|RIKEN cDNA A830018L16 gene 	ENSMUST00000137824.1|A830018L16Rik|ENSMUSG00000057715.7|RIKEN cDNA A830018L16 gene 	ENSMUST00000135014.1|A830018L16Rik|ENSMUSG00000057715.7|RIKEN cDNA A830018L16 gene 	ENSMUST00000179089.1|A830018L16Rik|ENSMUSG00000095719.1|RIKEN cDNA A830018L16 gene
mm10_v2_chr2_+_91082362_91082390	0.0526504	Hoxc9	ENSMUST00000169852.1|Spi1|ENSMUSG00000002111.8|spleen focus forming virus (SFFV) proviral integration oncogene
mm10_v2_chr10_+_4710119_4710166	0.0481798	Hoxc9	ENSMUST00000105588.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000105589.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr4_-_109202217_109202272	0.0459012	Hoxc9	ENSMUST00000160774.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000030288.7|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000162787.2|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr6_-_119388671_119388739	0.032462	Hoxc9	ENSMUST00000169744.1|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr1_+_58210397_58210457	0.022416	Hoxc9	ENSMUST00000040442.5|Aox4|ENSMUSG00000038242.6|aldehyde oxidase 4
mm10_v2_chr11_+_3330401_3330541	0.0223668	Hoxc9	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr11_-_94242701_94242729	0.0157682	Hoxc9	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr3_+_129199919_129199943	0.0154171	Hoxc9	ENSMUST00000029657.9|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2 	ENSMUST00000106382.4|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr3_+_129199960_129199975	0.0100643	Hoxc9	ENSMUST00000173645.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr2_-_38714491_38714542	0.00952124	Hoxc9	ENSMUST00000028084.4|Nr5a1|ENSMUSG00000026751.8|nuclear receptor subfamily 5, group A, member 1
mm10_v2_chr10_+_69925954_69926133	0.00799193	Hoxc9	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr1_+_74284930_74285072	0.00740509	Hoxc9	ENSMUST00000113805.1|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000027370.6|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia 	ENSMUST00000087226.4|Pnkd|ENSMUSG00000026179.8|paroxysmal nonkinesiogenic dyskinesia
mm10_v2_chr13_+_89540636_89540678	0.00621904	Hoxc9	ENSMUST00000022108.7|Hapln1|ENSMUSG00000021613.8|hyaluronan and proteoglycan link protein 1
mm10_v2_chr3_+_129199878_129199913	0.00389801	Hoxc9	ENSMUST00000174661.2|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
