mm10_v2_chr6_-_144209558_144209647	5.3069	Hoxd11_Cdx1_Hoxc11	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209448_144209469	5.24986	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209471_144209487	5.15981	Hoxd11_Cdx1_Hoxc11	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr15_+_25773985_25774042	3.2301	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr17_+_31433054_31433071	1.7881	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr18_-_62741387_62741387	1.48802	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097557.3|Spink13|ENSMUSG00000073551.3|serine peptidase inhibitor, Kazal type 13
mm10_v2_chr6_+_15196949_15197102	1.16745	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151301.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000131414.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000140557.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115469.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr10_+_116177351_116177417	1.16709	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155606.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R 	ENSMUST00000128399.1|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr17_+_3397189_3397207	1.13086	Hoxd11_Cdx1_Hoxc11	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr19_+_24875679_24875689	1.12421	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073080.5|Gm10053|ENSMUSG00000058927.5|predicted gene 10053
mm10_v2_chr18_-_42899470_42899643	1.11444	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120632.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr3_+_103575275_103575286	1.0532	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090697.4|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr6_+_80018877_80018945	1.02647	Hoxd11_Cdx1_Hoxc11	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr3_+_103575231_103575255	0.992384	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121834.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chrX_+_96455359_96455411	0.888674	Hoxd11_Cdx1_Hoxc11	ENSMUST00000033553.7|Heph|ENSMUSG00000031209.8|hephaestin
mm10_v2_chr7_-_73537621_73537766	0.870081	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr9_-_21067093_21067093	0.853692	Hoxd11_Cdx1_Hoxc11	ENSMUST00000115494.2|Zglp1|ENSMUSG00000079681.2|zinc finger, GATA-like protein 1
mm10_v2_chr1_-_163289214_163289235	0.730613	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr5_-_25100624_25100657	0.73028	Hoxd11_Cdx1_Hoxc11	ENSMUST00000030784.7|Prkag2|ENSMUSG00000028944.8|protein kinase, AMP-activated, gamma 2 non-catalytic subunit
mm10_v2_chr1_-_172027251_172027268	0.723197	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr5_+_138363719_138363719	0.696985	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100526.2|Gm10874|ENSMUSG00000075591.2|predicted gene 10874
mm10_v2_chr2_+_32395896_32395896	0.691635	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr17_-_70998010_70998013	0.685383	Hoxd11_Cdx1_Hoxc11	ENSMUST00000024846.6|Myl12a|ENSMUSG00000024048.8|myosin, light chain 12A, regulatory, non-sarcomeric
mm10_v2_chr7_-_31051431_31051488	0.675915	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr14_+_74640840_74640887	0.670954	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036653.3|Htr2a|ENSMUSG00000034997.4|5-hydroxytryptamine (serotonin) receptor 2A
mm10_v2_chr18_+_35770318_35770318	0.657485	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165299.1|Gm16490|ENSMUSG00000091842.1|predicted gene 16490
mm10_v2_chr4_-_136602641_136602760	0.630566	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105847.1|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A 	ENSMUST00000116273.2|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A
mm10_v2_chr7_+_43690418_43690418	0.617867	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056329.6|Klk14|ENSMUSG00000044737.6|kallikrein related-peptidase 14
mm10_v2_chr2_+_178141920_178141939	0.614368	Hoxd11_Cdx1_Hoxc11	ENSMUST00000103066.3|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr1_+_6734827_6734874	0.595114	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr7_-_119895446_119895543	0.562199	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098080.2|Dcun1d3|ENSMUSG00000048787.6|DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)
mm10_v2_chr4_+_102254739_102254761	0.554937	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr2_+_20737306_20737321	0.552231	Hoxd11_Cdx1_Hoxc11	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr7_-_141435327_141435397	0.546519	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138865.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr13_-_84064772_84064808	0.545193	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr1_-_155099630_155099636	0.539122	Hoxd11_Cdx1_Hoxc11	ENSMUST00000055322.4|Ier5|ENSMUSG00000056708.4|immediate early response 5
mm10_v2_chr3_+_67892189_67892226	0.53778	Hoxd11_Cdx1_Hoxc11	ENSMUST00000063263.3|Iqcj|ENSMUSG00000051777.4|IQ motif containing J
mm10_v2_chr4_+_105790534_105790534	0.535919	Hoxd11_Cdx1_Hoxc11	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr19_+_44493472_44493472	0.531972	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041163.4|Wnt8b|ENSMUSG00000036961.4|wingless related MMTV integration site 8b
mm10_v2_chr1_+_12692430_12692485	0.524237	Hoxd11_Cdx1_Hoxc11	ENSMUST00000180062.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1 	ENSMUST00000177608.1|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr4_+_105789869_105789869	0.51673	Hoxd11_Cdx1_Hoxc11	ENSMUST00000184254.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr8_+_124023394_124023394	0.514175	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr18_-_47333311_47333373	0.482376	Hoxd11_Cdx1_Hoxc11	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr3_-_154330543_154330576	0.464151	Hoxd11_Cdx1_Hoxc11	ENSMUST00000184966.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8 	ENSMUST00000177846.2|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr11_-_100146120_100146120	0.463239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007317.7|Krt19|ENSMUSG00000020911.8|keratin 19
mm10_v2_chr18_-_42899294_42899317	0.461319	Hoxd11_Cdx1_Hoxc11	ENSMUST00000117687.1|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr5_+_138187485_138187521	0.454549	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr7_-_142661858_142661880	0.450009	Hoxd11_Cdx1_Hoxc11	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr7_-_5014645_5014697	0.448518	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr12_+_33147693_33147716	0.446512	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077456.6|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1 	ENSMUST00000110824.2|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr10_-_42583628_42583639	0.434706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr11_-_109472611_109472688	0.432518	Hoxd11_Cdx1_Hoxc11	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr5_-_73256555_73256636	0.419008	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chrX_+_150547375_150547459	0.418522	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chr5_-_73191848_73191922	0.414262	Hoxd11_Cdx1_Hoxc11	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr10_+_42583787_42583838	0.411487	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105497.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1 	ENSMUST00000144806.1|Ostm1|ENSMUSG00000038280.6|osteopetrosis associated transmembrane protein 1
mm10_v2_chr17_-_35074485_35074500	0.411405	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007259.3|Ly6g6d|ENSMUSG00000073413.3|lymphocyte antigen 6 complex, locus G6D
mm10_v2_chr10_+_45577811_45577914	0.404658	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037044.6|Hace1|ENSMUSG00000038822.9|HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1
mm10_v2_chr4_-_11981265_11981265	0.402436	Hoxd11_Cdx1_Hoxc11	ENSMUST00000098260.2|Gm10604|ENSMUSG00000073995.2|predicted gene 10604
mm10_v2_chr7_-_30612731_30612744	0.398768	Hoxd11_Cdx1_Hoxc11	ENSMUST00000006476.4|Upk1a|ENSMUSG00000006313.4|uroplakin 1A
mm10_v2_chr1_+_137928100_137928170	0.392598	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054333.2|A130050O07Rik|ENSMUSG00000051480.2|RIKEN cDNA A130050O07 gene
mm10_v2_chr1_-_172027269_172027313	0.378089	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr12_-_111966954_111967017	0.364435	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021719.5|2010107E04Rik|ENSMUSG00000021290.5|RIKEN cDNA 2010107E04 gene
mm10_v2_chr15_-_79062866_79062941	0.362121	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr4_+_5724304_5724357	0.35151	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr7_-_141434532_141434605	0.350598	Hoxd11_Cdx1_Hoxc11	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr13_+_104109752_104109829	0.34377	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160322.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 	ENSMUST00000159574.1|Sgtb|ENSMUSG00000042743.7|small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta
mm10_v2_chr5_-_142906702_142906754	0.341365	Hoxd11_Cdx1_Hoxc11	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr10_+_119992916_119992958	0.339247	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr5_+_31054821_31054955	0.337546	Hoxd11_Cdx1_Hoxc11	ENSMUST00000174367.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000170329.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000031049.6|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm10_v2_chr5_-_51567717_51567732	0.33657	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127135.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 	ENSMUST00000151104.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr7_-_45062393_45062436	0.333811	Hoxd11_Cdx1_Hoxc11	ENSMUST00000129101.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr11_+_29463735_29463888	0.330874	Hoxd11_Cdx1_Hoxc11	ENSMUST00000155854.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr18_-_62756275_62756347	0.322475	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chrX_-_134541847_134541900	0.319518	Hoxd11_Cdx1_Hoxc11	ENSMUST00000054213.4|Timm8a1|ENSMUSG00000048007.4|translocase of inner mitochondrial membrane 8A1
mm10_v2_chr11_-_84067063_84067095	0.310763	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108101.1|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr14_+_12189943_12190001	0.309217	Hoxd11_Cdx1_Hoxc11	ENSMUST00000119888.1|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr15_+_100761741_100761797	0.305974	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr10_-_39122277_39122314	0.305622	Hoxd11_Cdx1_Hoxc11	ENSMUST00000136546.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr14_+_105681824_105681831	0.305506	Hoxd11_Cdx1_Hoxc11	ENSMUST00000073238.6|Gm10076|ENSMUSG00000060143.6|predicted gene 10076
mm10_v2_chr19_-_7341848_7341863	0.305234	Hoxd11_Cdx1_Hoxc11	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr5_+_31054766_31054811	0.296032	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013773.5|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase 	ENSMUST00000114646.1|Cad|ENSMUSG00000013629.10|carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
mm10_v2_chr4_+_11704439_11704457	0.296026	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108304.2|Gem|ENSMUSG00000028214.7|GTP binding protein (gene overexpressed in skeletal muscle)
mm10_v2_chr2_+_130576170_130576176	0.295301	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chrX_+_56447965_56447965	0.2947	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079663.6|Gm2174|ENSMUSG00000058932.6|predicted gene 2174
mm10_v2_chr15_+_72913357_72913357	0.294481	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166418.2|Gm3150|ENSMUSG00000096173.1|predicted gene 3150
mm10_v2_chr11_-_120549695_120549728	0.291712	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034913.4|Fam195b|ENSMUSG00000061111.8|family with sequence similarity 195, member B
mm10_v2_chr16_+_11405648_11405713	0.289551	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr7_-_45061706_45061740	0.28311	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107832.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr7_-_29906087_29906137	0.282747	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr1_-_72536930_72536999	0.267416	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047786.5|March4|ENSMUSG00000039372.5|membrane-associated ring finger (C3HC4) 4
mm10_v2_chr2_+_173737492_173737511	0.260069	Hoxd11_Cdx1_Hoxc11	ENSMUST00000067530.4|Vapb|ENSMUSG00000054455.4|vesicle-associated membrane protein, associated protein B and C
mm10_v2_chr13_-_58354862_58354862	0.256916	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043605.5|Kif27|ENSMUSG00000060176.3|kinesin family member 27
mm10_v2_chr5_+_150259922_150259936	0.254549	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087204.5|Fry|ENSMUSG00000056602.8|furry homolog (Drosophila)
mm10_v2_chr6_-_122340525_122340561	0.248377	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr19_-_7341792_7341829	0.242814	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr5_-_28467093_28467109	0.237243	Hoxd11_Cdx1_Hoxc11	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr6_-_87981482_87981622	0.237239	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056403.5|H1fx|ENSMUSG00000044927.5|H1 histone family, member X
mm10_v2_chr7_-_126649556_126649580	0.233234	Hoxd11_Cdx1_Hoxc11	ENSMUST00000084587.1|2510046G10Rik|ENSMUSG00000066175.1|RIKEN cDNA 2510046G10 gene
mm10_v2_chr12_-_31950535_31950560	0.232615	Hoxd11_Cdx1_Hoxc11	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr10_+_37139558_37139558	0.227352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr3_+_96221111_96221134	0.226258	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr14_+_65806066_65806232	0.222403	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139644.1|Pbk|ENSMUSG00000022033.3|PDZ binding kinase
mm10_v2_chr3_+_122044428_122044469	0.219148	Hoxd11_Cdx1_Hoxc11	ENSMUST00000013995.8|Abca4|ENSMUSG00000028125.8|ATP-binding cassette, sub-family A (ABC1), member 4
mm10_v2_chr7_-_45459839_45459884	0.213601	Hoxd11_Cdx1_Hoxc11	ENSMUST00000094434.4|Ftl1|ENSMUSG00000050708.8|ferritin light chain 1
mm10_v2_chr1_-_45503282_45503282	0.211577	Hoxd11_Cdx1_Hoxc11	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr7_-_45061651_45061691	0.211307	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007981.3|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 	ENSMUST00000107831.1|Prrg2|ENSMUSG00000007837.4|proline-rich Gla (G-carboxyglutamic acid) polypeptide 2
mm10_v2_chr5_-_62765618_62765656	0.208063	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr16_-_55838827_55838899	0.206198	Hoxd11_Cdx1_Hoxc11	ENSMUST00000096026.2|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000036273.6|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta 	ENSMUST00000114457.1|Nfkbiz|ENSMUSG00000035356.10|nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta
mm10_v2_chrX_-_43274786_43274786	0.204482	Hoxd11_Cdx1_Hoxc11	ENSMUST00000016294.7|Tenm1|ENSMUSG00000016150.9|teneurin transmembrane protein 1
mm10_v2_chr10_+_5593718_5593739	0.204143	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr3_-_19264959_19264974	0.203012	Hoxd11_Cdx1_Hoxc11	ENSMUST00000121951.1|Pde7a|ENSMUSG00000069094.6|phosphodiesterase 7A
mm10_v2_chr6_-_13839916_13839942	0.194632	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr4_-_133967296_133967441	0.190664	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105893.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr11_-_17211504_17211573	0.190092	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020317.7|Pno1|ENSMUSG00000020116.7|partner of NOB1 homolog (S. cerevisiae)
mm10_v2_chr2_+_71786923_71786978	0.189975	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112101.1|Itga6|ENSMUSG00000027111.9|integrin alpha 6 	ENSMUST00000028522.3|Itga6|ENSMUSG00000027111.9|integrin alpha 6
mm10_v2_chr3_-_141931523_141931565	0.185308	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106232.1|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr10_+_43524080_43524102	0.184824	Hoxd11_Cdx1_Hoxc11	ENSMUST00000057649.6|Gm9803|ENSMUSG00000045886.6|predicted gene 9803
mm10_v2_chr11_-_21370452_21370485	0.182596	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102875.4|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr2_-_45112890_45113010	0.175952	Hoxd11_Cdx1_Hoxc11	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr2_+_31759932_31759989	0.174945	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028190.6|Abl1|ENSMUSG00000026842.10|c-abl oncogene 1, non-receptor tyrosine kinase
mm10_v2_chr6_-_145047725_145047853	0.172438	Hoxd11_Cdx1_Hoxc11	ENSMUST00000123930.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chrX_-_72918284_72918396	0.1723	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152200.1|Cetn2|ENSMUSG00000031347.6|centrin 2
mm10_v2_chr6_+_135065651_135065682	0.171026	Hoxd11_Cdx1_Hoxc11	ENSMUST00000050104.7|Gprc5a|ENSMUSG00000046733.7|G protein-coupled receptor, family C, group 5, member A
mm10_v2_chr1_-_74600564_74600622	0.170926	Hoxd11_Cdx1_Hoxc11	ENSMUST00000127938.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000154874.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chr6_-_145047636_145047661	0.169215	Hoxd11_Cdx1_Hoxc11	ENSMUST00000149769.1|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr9_+_62858085_62858138	0.167503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000034777.6|Calml4|ENSMUSG00000032246.7|calmodulin-like 4 	ENSMUST00000163820.1|Calml4|ENSMUSG00000032246.7|calmodulin-like 4
mm10_v2_chr1_+_45311538_45311638	0.167405	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chr4_-_82850721_82850814	0.165399	Hoxd11_Cdx1_Hoxc11	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chrX_-_105928547_105928583	0.164207	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101305.2|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr9_-_21989427_21989456	0.158477	Hoxd11_Cdx1_Hoxc11	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr2_-_18048784_18048822	0.157104	Hoxd11_Cdx1_Hoxc11	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr19_+_33822908_33822908	0.156792	Hoxd11_Cdx1_Hoxc11	ENSMUST00000042061.6|Gm5519|ENSMUSG00000037603.6|predicted pseudogene 5519
mm10_v2_chr2_+_181767040_181767073	0.155267	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_-_101665195_101665226	0.153794	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044125.8|Nkx6-1|ENSMUSG00000035187.8|NK6 homeobox 1
mm10_v2_chr17_+_27839974_27840119	0.151045	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071006.7|Snrpc|ENSMUSG00000024217.9|U1 small nuclear ribonucleoprotein C
mm10_v2_chr4_-_133968611_133968650	0.145525	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102552.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr3_-_95106779_95106897	0.143556	Hoxd11_Cdx1_Hoxc11	ENSMUST00000005768.7|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107232.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107236.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr17_+_35059035_35059130	0.143548	Hoxd11_Cdx1_Hoxc11	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr10_+_4611971_4612021	0.140937	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr1_+_164048214_164048234	0.139744	Hoxd11_Cdx1_Hoxc11	ENSMUST00000027874.5|Sele|ENSMUSG00000026582.6|selectin, endothelial cell
mm10_v2_chr2_+_152669461_152669539	0.138196	Hoxd11_Cdx1_Hoxc11	ENSMUST00000125366.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000109825.1|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000089059.2|H13|ENSMUSG00000019188.10|histocompatibility 13 	ENSMUST00000079247.3|H13|ENSMUSG00000019188.10|histocompatibility 13
mm10_v2_chr6_-_122340499_122340510	0.136892	Hoxd11_Cdx1_Hoxc11	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr15_-_79774383_79774394	0.132104	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069877.5|Dnal4|ENSMUSG00000022420.9|dynein, axonemal, light chain 4
mm10_v2_chr6_-_99044414_99044459	0.130035	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chrX_+_141475385_141475468	0.129339	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112931.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5 	ENSMUST00000112930.1|Col4a5|ENSMUSG00000031274.10|collagen, type IV, alpha 5
mm10_v2_chr4_+_95579463_95579499	0.127774	Hoxd11_Cdx1_Hoxc11	ENSMUST00000150830.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000134012.2|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr1_-_36244245_36244320	0.126743	Hoxd11_Cdx1_Hoxc11	ENSMUST00000046875.7|Uggt1|ENSMUSG00000037470.8|UDP-glucose glycoprotein glucosyltransferase 1
mm10_v2_chr5_+_137641334_137641437	0.126362	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177466.1|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide 	ENSMUST00000166099.2|Sap25|ENSMUSG00000079165.4|sin3 associated polypeptide
mm10_v2_chr7_-_127208423_127208504	0.124942	Hoxd11_Cdx1_Hoxc11	ENSMUST00000120705.1|Tbc1d10b|ENSMUSG00000042492.6|TBC1 domain family, member 10b
mm10_v2_chr2_-_140671440_140671458	0.12352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr10_+_19356558_19356565	0.12306	Hoxd11_Cdx1_Hoxc11	ENSMUST00000053225.5|Olig3|ENSMUSG00000045591.5|oligodendrocyte transcription factor 3
mm10_v2_chr11_-_5542177_5542219	0.122381	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr11_-_109298066_109298079	0.1218	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr15_-_98934522_98934586	0.118332	Hoxd11_Cdx1_Hoxc11	ENSMUST00000077577.7|Tuba1b|ENSMUSG00000023004.8|tubulin, alpha 1B
mm10_v2_chr8_-_69902558_69902558	0.118113	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110167.3|Ndufa13|ENSMUSG00000036199.8|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
mm10_v2_chr4_-_133967953_133968005	0.117791	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102553.4|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr16_-_35769356_35769384	0.117713	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023554.8|Dirc2|ENSMUSG00000022848.8|disrupted in renal carcinoma 2 (human)
mm10_v2_chr18_+_4994600_4994623	0.117687	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr5_+_90367204_90367204	0.117323	Hoxd11_Cdx1_Hoxc11	ENSMUST00000068250.3|Gm9958|ENSMUSG00000054945.3|predicted gene 9958
mm10_v2_chr15_-_79774408_79774474	0.116941	Hoxd11_Cdx1_Hoxc11	ENSMUST00000023055.6|Dnal4|ENSMUSG00000022420.9|dynein, axonemal, light chain 4
mm10_v2_chr1_-_89933290_89933290	0.113292	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036954.7|Gbx2|ENSMUSG00000034486.7|gastrulation brain homeobox 2
mm10_v2_chr10_+_90071095_90071117	0.109074	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr3_-_37724321_37724490	0.108604	Hoxd11_Cdx1_Hoxc11	ENSMUST00000108105.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000079755.4|Gm5148|ENSMUSG00000058174.7|predicted gene 5148 	ENSMUST00000099128.1|Gm5148|ENSMUSG00000058174.7|predicted gene 5148
mm10_v2_chr11_-_109298121_109298142	0.108121	Hoxd11_Cdx1_Hoxc11	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr2_-_140671400_140671427	0.107829	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr9_-_42124276_42124333	0.107608	Hoxd11_Cdx1_Hoxc11	ENSMUST00000060989.8|Sorl1|ENSMUSG00000049313.8|sortilin-related receptor, LDLR class A repeats-containing
mm10_v2_chr15_-_81843699_81843755	0.107541	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092020.2|Gm8444|ENSMUSG00000069439.2|predicted gene 8444
mm10_v2_chr2_-_140671462_140671476	0.107481	Hoxd11_Cdx1_Hoxc11	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr4_-_47057296_47057356	0.107025	Hoxd11_Cdx1_Hoxc11	ENSMUST00000107747.1|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6 	ENSMUST00000084616.2|Anks6|ENSMUSG00000066191.5|ankyrin repeat and sterile alpha motif domain containing 6
mm10_v2_chr11_+_115603920_115603969	0.106241	Hoxd11_Cdx1_Hoxc11	ENSMUST00000058109.8|Mrps7|ENSMUSG00000046756.10|mitchondrial ribosomal protein S7
mm10_v2_chr3_-_144760841_144760868	0.103008	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr3_+_108591279_108591414	0.101123	Hoxd11_Cdx1_Hoxc11	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr11_-_120624973_120625014	0.0989773	Hoxd11_Cdx1_Hoxc11	ENSMUST00000106183.2|Sirt7|ENSMUSG00000025138.8|sirtuin 7 	ENSMUST00000080202.5|Sirt7|ENSMUSG00000025138.8|sirtuin 7
mm10_v2_chr3_-_96220880_96220899	0.0968174	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr1_+_58445151_58445307	0.0938695	Hoxd11_Cdx1_Hoxc11	ENSMUST00000087521.6|Nif3l1|ENSMUSG00000026036.11|Ngg1 interacting factor 3-like 1 (S. pombe) 	ENSMUST00000114337.1|Nif3l1|ENSMUSG00000026036.11|Ngg1 interacting factor 3-like 1 (S. pombe)
mm10_v2_chr10_-_128547722_128547774	0.0917228	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040572.3|Zc3h10|ENSMUSG00000039810.5|zinc finger CCCH type containing 10
mm10_v2_chr19_+_47067721_47067768	0.0912319	Hoxd11_Cdx1_Hoxc11	ENSMUST00000026027.5|Taf5|ENSMUSG00000025049.5|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr19_-_46395722_46395756	0.0910992	Hoxd11_Cdx1_Hoxc11	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr17_-_15826521_15826590	0.0891822	Hoxd11_Cdx1_Hoxc11	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr12_+_33147754_33147770	0.0870659	Hoxd11_Cdx1_Hoxc11	ENSMUST00000146040.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1 	ENSMUST00000125192.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr13_-_22035589_22035643	0.0869994	Hoxd11_Cdx1_Hoxc11	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr18_-_20682963_20683006	0.084658	Hoxd11_Cdx1_Hoxc11	ENSMUST00000165229.2|Gm10269|ENSMUSG00000091449.2|predicted gene 10269
mm10_v2_chr1_-_37496095_37496156	0.0780539	Hoxd11_Cdx1_Hoxc11	ENSMUST00000148047.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A 	ENSMUST00000143636.1|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr2_+_29788237_29788302	0.0763102	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028137.3|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast) 	ENSMUST00000148791.1|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast)
mm10_v2_chr12_+_105453831_105453919	0.0737335	Hoxd11_Cdx1_Hoxc11	ENSMUST00000178224.1|D430019H16Rik|ENSMUSG00000094910.1|RIKEN cDNA D430019H16 gene
mm10_v2_chrX_-_74246534_74246556	0.0732759	Hoxd11_Cdx1_Hoxc11	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr8_-_70527645_70527783	0.0720117	Hoxd11_Cdx1_Hoxc11	ENSMUST00000132867.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chr3_+_89459118_89459214	0.0706309	Hoxd11_Cdx1_Hoxc11	ENSMUST00000029564.5|Pmvk|ENSMUSG00000027952.10|phosphomevalonate kinase
mm10_v2_chr2_+_29346803_29346842	0.0704622	Hoxd11_Cdx1_Hoxc11	ENSMUST00000028139.4|Med27|ENSMUSG00000026799.9|mediator complex subunit 27 	ENSMUST00000113830.4|Med27|ENSMUSG00000026799.9|mediator complex subunit 27
mm10_v2_chr1_+_19103022_19103043	0.0698507	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr2_-_71367749_71367797	0.0684399	Hoxd11_Cdx1_Hoxc11	ENSMUST00000151937.1|Slc25a12|ENSMUSG00000027010.10|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm10_v2_chr14_+_28511344_28511405	0.0662503	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr15_-_81104999_81105083	0.0653458	Hoxd11_Cdx1_Hoxc11	ENSMUST00000109579.2|Mkl1|ENSMUSG00000042292.10|MKL (megakaryoblastic leukemia)/myocardin-like 1
mm10_v2_chr15_+_85510812_85510812	0.0653365	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr10_+_59395632_59395632	0.0646016	Hoxd11_Cdx1_Hoxc11	ENSMUST00000092511.4|Gm10273|ENSMUSG00000069622.4|predicted pseudogene 10273
mm10_v2_chr7_+_126649297_126649344	0.0642205	Hoxd11_Cdx1_Hoxc11	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr10_+_69787431_69787458	0.0641747	Hoxd11_Cdx1_Hoxc11	ENSMUST00000183240.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_+_115933282_115933282	0.0624065	Hoxd11_Cdx1_Hoxc11	ENSMUST00000140991.1|Sap30bp|ENSMUSG00000020755.3|SAP30 binding protein
mm10_v2_chr2_-_79908389_79908403	0.0605995	Hoxd11_Cdx1_Hoxc11	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr2_-_29787622_29787680	0.0592309	Hoxd11_Cdx1_Hoxc11	ENSMUST00000177467.1|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli) 	ENSMUST00000113807.3|Trub2|ENSMUSG00000039826.7|TruB pseudouridine (psi) synthase homolog 2 (E. coli)
mm10_v2_chr11_-_97700327_97700497	0.0583205	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr11_+_97798995_97799021	0.0578331	Hoxd11_Cdx1_Hoxc11	ENSMUST00000143571.1|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr7_+_66109474_66109515	0.057469	Hoxd11_Cdx1_Hoxc11	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr2_+_29965560_29965717	0.0565985	Hoxd11_Cdx1_Hoxc11	ENSMUST00000113717.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113719.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000100225.2|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000113741.1|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000095083.4|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1 	ENSMUST00000046257.7|Sptan1|ENSMUSG00000057738.7|spectrin alpha, non-erythrocytic 1
mm10_v2_chr2_-_79908428_79908438	0.0564452	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr14_+_8098196_8098296	0.0525986	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112689.2|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase 	ENSMUST00000036682.7|Pxk|ENSMUSG00000033885.8|PX domain containing serine/threonine kinase
mm10_v2_chr13_-_98890974_98891035	0.0517135	Hoxd11_Cdx1_Hoxc11	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr3_-_89960562_89960629	0.051038	Hoxd11_Cdx1_Hoxc11	ENSMUST00000069805.7|Atp8b2|ENSMUSG00000060671.6|ATPase, class I, type 8B, member 2
mm10_v2_chr12_+_55836365_55836408	0.050846	Hoxd11_Cdx1_Hoxc11	ENSMUST00000059250.6|Brms1l|ENSMUSG00000012076.7|breast cancer metastasis-suppressor 1-like
mm10_v2_chr11_+_94211431_94211454	0.0508269	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041589.5|Tob1|ENSMUSG00000037573.5|transducer of ErbB-2.1
mm10_v2_chr2_-_27463994_27464116	0.0502845	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164296.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr7_+_4922251_4922251	0.0497119	Hoxd11_Cdx1_Hoxc11	ENSMUST00000047309.5|Nat14|ENSMUSG00000035285.5|N-acetyltransferase 14
mm10_v2_chr2_-_18048347_18048449	0.0469901	Hoxd11_Cdx1_Hoxc11	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr18_-_35498856_35498925	0.0465359	Hoxd11_Cdx1_Hoxc11	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr2_+_119208975_119209029	0.0455875	Hoxd11_Cdx1_Hoxc11	ENSMUST00000102519.4|Zfyve19|ENSMUSG00000068580.5|zinc finger, FYVE domain containing 19
mm10_v2_chr9_+_89199319_89199379	0.0443953	Hoxd11_Cdx1_Hoxc11	ENSMUST00000138109.1|Mthfs|ENSMUSG00000066442.10|5, 10-methenyltetrahydrofolate synthetase
mm10_v2_chr11_-_110251736_110251776	0.044357	Hoxd11_Cdx1_Hoxc11	ENSMUST00000044003.7|Abca6|ENSMUSG00000044749.7|ATP-binding cassette, sub-family A (ABC1), member 6
mm10_v2_chr13_+_49582745_49582778	0.0434633	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr11_+_82911253_82911294	0.0410914	Hoxd11_Cdx1_Hoxc11	ENSMUST00000164945.1|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans) 	ENSMUST00000018989.7|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans)
mm10_v2_chr2_+_30171486_30171497	0.0403782	Hoxd11_Cdx1_Hoxc11	ENSMUST00000015481.5|Endog|ENSMUSG00000015337.5|endonuclease G
mm10_v2_chr1_-_65051119_65051150	0.0393973	Hoxd11_Cdx1_Hoxc11	ENSMUST00000161960.1|Cryge|ENSMUSG00000070870.6|crystallin, gamma E 	ENSMUST00000087359.5|Cryge|ENSMUSG00000070870.6|crystallin, gamma E
mm10_v2_chr10_-_13324160_13324242	0.0381324	Hoxd11_Cdx1_Hoxc11	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr4_-_133967893_133967951	0.036959	Hoxd11_Cdx1_Hoxc11	ENSMUST00000100472.3|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2 	ENSMUST00000136327.1|Hmgn2|ENSMUSG00000003038.9|high mobility group nucleosomal binding domain 2
mm10_v2_chr9_-_8042785_8042882	0.0332453	Hoxd11_Cdx1_Hoxc11	ENSMUST00000065291.1|9230110C19Rik|ENSMUSG00000053070.4|RIKEN cDNA 9230110C19 gene
mm10_v2_chr19_-_56548013_56548046	0.0324924	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr17_-_35910032_35910076	0.0321483	Hoxd11_Cdx1_Hoxc11	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr12_-_55302974_55303014	0.0287616	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021410.8|Ppp2r3c|ENSMUSG00000021022.8|protein phosphatase 2, regulatory subunit B'', gamma
mm10_v2_chr5_-_148552783_148552843	0.0281482	Hoxd11_Cdx1_Hoxc11	ENSMUST00000079324.7|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3 	ENSMUST00000164904.1|Ubl3|ENSMUSG00000001687.9|ubiquitin-like 3
mm10_v2_chr11_+_98026918_98026931	0.0278908	Hoxd11_Cdx1_Hoxc11	ENSMUST00000017548.6|Rpl19|ENSMUSG00000017404.6|ribosomal protein L19
mm10_v2_chr17_+_84956718_84956745	0.0230397	Hoxd11_Cdx1_Hoxc11	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr15_-_82047579_82047610	0.0203663	Hoxd11_Cdx1_Hoxc11	ENSMUST00000166578.1|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) 	ENSMUST00000080622.7|Nhp2l1|ENSMUSG00000063480.7|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)
mm10_v2_chr14_+_65805832_65805846	0.0200339	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022612.3|Pbk|ENSMUSG00000022033.3|PDZ binding kinase
mm10_v2_chr9_+_121950988_121951044	0.0189233	Hoxd11_Cdx1_Hoxc11	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr5_+_33018816_33018865	0.0187048	Hoxd11_Cdx1_Hoxc11	ENSMUST00000019109.7|Ywhah|ENSMUSG00000018965.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
mm10_v2_chr9_-_110624361_110624439	0.0183146	Hoxd11_Cdx1_Hoxc11	ENSMUST00000035069.9|Nradd|ENSMUSG00000032491.10|neurotrophin receptor associated death domain
mm10_v2_chr18_-_3281712_3281747	0.0111572	Hoxd11_Cdx1_Hoxc11	ENSMUST00000182204.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000154705.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000182833.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000151084.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr1_-_105659008_105659008	0.0078138	Hoxd11_Cdx1_Hoxc11	ENSMUST00000070699.8|Pign|ENSMUSG00000056536.8|phosphatidylinositol glycan anchor biosynthesis, class N
mm10_v2_chr4_+_59035088_59035247	0.00702726	Hoxd11_Cdx1_Hoxc11	ENSMUST00000041160.6|Gng10|ENSMUSG00000038607.6|guanine nucleotide binding protein (G protein), gamma 10
mm10_v2_chr11_-_69662625_69662642	0.0052047	Hoxd11_Cdx1_Hoxc11	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr1_+_58646608_58646608	0.00410148	Hoxd11_Cdx1_Hoxc11	ENSMUST00000081455.4|Gm10068|ENSMUSG00000059647.4|predicted gene 10068
mm10_v2_chr14_+_45329815_45329849	0.00336452	Hoxd11_Cdx1_Hoxc11	ENSMUST00000022380.7|Psmc6|ENSMUSG00000021832.7|proteasome (prosome, macropain) 26S subunit, ATPase, 6
mm10_v2_chr10_+_43221505_43221600	0.00285995	Hoxd11_Cdx1_Hoxc11	ENSMUST00000159139.1|Pdss2|ENSMUSG00000038240.7|prenyl (solanesyl) diphosphate synthase, subunit 2
mm10_v2_chr19_+_56548254_56548283	0.00260187	Hoxd11_Cdx1_Hoxc11	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr11_+_77216180_77216287	0.00233418	Hoxd11_Cdx1_Hoxc11	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr16_-_89508313_89508327	0.00114979	Hoxd11_Cdx1_Hoxc11	ENSMUST00000056118.2|Krtap7-1|ENSMUSG00000056706.2|keratin associated protein 7-1
mm10_v2_chr5_+_107497762_107497802	0.000769706	Hoxd11_Cdx1_Hoxc11	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr11_-_103267405_103267472	0.000611352	Hoxd11_Cdx1_Hoxc11	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr6_-_8259098_8259173	0.000354772	Hoxd11_Cdx1_Hoxc11	ENSMUST00000012627.4|Rpa3|ENSMUSG00000012483.4|replication protein A3
mm10_v2_chr18_-_37020679_37020679	0.000113091	Hoxd11_Cdx1_Hoxc11	ENSMUST00000097612.2|Gm10545|ENSMUSG00000073594.2|predicted gene 10545
