mm10_v2_chr3_+_114030532_114030571	1.4908	Hoxd9	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr12_+_38783503_38783527	1.48512	Hoxd9	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr7_+_66365905_66365905	1.3885	Hoxd9	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chr5_-_77408034_77408051	1.29323	Hoxd9	ENSMUST00000163898.1|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7 	ENSMUST00000046746.6|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7
mm10_v2_chr15_-_65014904_65014904	1.17185	Hoxd9	ENSMUST00000110100.2|Gm21961|ENSMUSG00000079024.2|predicted gene, 21961
mm10_v2_chr13_-_41273977_41273977	1.07325	Hoxd9	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr8_+_66386292_66386308	1.04255	Hoxd9	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr12_+_77238093_77238122	1.02906	Hoxd9	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chrM_+_11734_11757	0.959453	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr1_-_128102412_128102485	0.952621	Hoxd9	ENSMUST00000112538.1|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3 	ENSMUST00000086614.5|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr1_+_167598450_167598480	0.936446	Hoxd9	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr1_-_140183404_140183415	0.9217	Hoxd9	ENSMUST00000066859.6|Cfh|ENSMUSG00000026365.9|complement component factor h 	ENSMUST00000111976.2|Cfh|ENSMUSG00000026365.9|complement component factor h
mm10_v2_chr10_+_75037066_75037100	0.867811	Hoxd9	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chrX_+_82948861_82948915	0.838482	Hoxd9	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr3_+_35754121_35754135	0.802032	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr13_-_74376566_74376566	0.795735	Hoxd9	ENSMUST00000091481.2|Zfp72|ENSMUSG00000069184.2|zinc finger protein 72
mm10_v2_chr2_-_116064721_116064749	0.782686	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr11_+_29373618_29373777	0.781254	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr19_-_29753600_29753600	0.728755	Hoxd9	ENSMUST00000175764.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr12_+_36314160_36314171	0.7095	Hoxd9	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr2_-_63184253_63184292	0.705175	Hoxd9	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_-_62766153_62766246	0.693021	Hoxd9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_+_125136692_125136769	0.671858	Hoxd9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr1_+_167598384_167598411	0.576956	Hoxd9	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr16_-_45693658_45693743	0.541111	Hoxd9	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr5_-_69590783_69590803	0.52886	Hoxd9	ENSMUST00000173927.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr1_-_97761538_97761609	0.521847	Hoxd9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr16_-_65562686_65562769	0.507881	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr4_+_136143497_136143497	0.503519	Hoxd9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr7_-_14562171_14562171	0.492405	Hoxd9	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr17_-_78684262_78684352	0.470309	Hoxd9	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr2_-_84425258_84425411	0.464789	Hoxd9	ENSMUST00000074262.2|Calcrl|ENSMUSG00000059588.7|calcitonin receptor-like
mm10_v2_chrX_-_111697069_111697127	0.457761	Hoxd9	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr7_+_127800604_127800696	0.449076	Hoxd9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr3_-_65958236_65958252	0.446363	Hoxd9	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr13_-_105271039_105271039	0.418798	Hoxd9	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr3_+_32436376_32436376	0.407643	Hoxd9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chrX_+_85048309_85048413	0.402259	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr1_+_180111339_180111339	0.398544	Hoxd9	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr15_+_39006272_39006365	0.388568	Hoxd9	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chrX_-_134111852_134111873	0.377024	Hoxd9	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr16_+_92292380_92292397	0.372639	Hoxd9	ENSMUST00000047383.3|Kcne2|ENSMUSG00000039672.6|potassium voltage-gated channel, Isk-related subfamily, gene 2
mm10_v2_chr2_-_37647199_37647285	0.367673	Hoxd9	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr19_+_46689902_46689943	0.353984	Hoxd9	ENSMUST00000074912.7|2010012O05Rik|ENSMUSG00000062376.7|RIKEN cDNA 2010012O05 gene
mm10_v2_chr7_+_30565410_30565432	0.348367	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr6_-_36811361_36811361	0.312322	Hoxd9	ENSMUST00000101534.1|Ptn|ENSMUSG00000029838.8|pleiotrophin
mm10_v2_chr19_+_23723279_23723279	0.31112	Hoxd9	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr15_+_16778101_16778101	0.309625	Hoxd9	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chr12_+_59129720_59129755	0.30503	Hoxd9	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr14_-_36919314_36919352	0.29477	Hoxd9	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr1_-_175491130_175491130	0.281423	Hoxd9	ENSMUST00000027812.5|Rgs7|ENSMUSG00000026527.8|regulator of G protein signaling 7
mm10_v2_chr9_-_64172879_64172918	0.267893	Hoxd9	ENSMUST00000176299.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000130127.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000176794.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000177045.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein
mm10_v2_chr6_+_11925869_11925941	0.260715	Hoxd9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr16_+_44943737_44943752	0.2596	Hoxd9	ENSMUST00000114622.3|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3 	ENSMUST00000166731.1|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3
mm10_v2_chr16_+_20696175_20696211	0.251562	Hoxd9	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr12_+_59129757_59129818	0.248349	Hoxd9	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr1_-_24612700_24612700	0.239168	Hoxd9	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr5_+_63812447_63812538	0.226226	Hoxd9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr1_+_49244616_49244616	0.224819	Hoxd9	ENSMUST00000056879.8|C230029F24Rik|ENSMUSG00000051616.8|RIKEN cDNA C230029F24 gene
mm10_v2_chr12_+_102128718_102128739	0.217385	Hoxd9	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr16_+_10835046_10835084	0.216576	Hoxd9	ENSMUST00000037913.8|Rmi2|ENSMUSG00000037991.9|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
mm10_v2_chr18_-_78206408_78206440	0.215122	Hoxd9	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr2_-_175131864_175131864	0.205626	Hoxd9	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr18_+_37400845_37400886	0.20356	Hoxd9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr2_+_91526756_91526763	0.199144	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chr5_-_113310729_113310788	0.198022	Hoxd9	ENSMUST00000112325.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1 	ENSMUST00000048112.6|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chrX_-_10216918_10216921	0.196939	Hoxd9	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr9_-_96437434_96437434	0.184808	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr7_-_16286744_16286795	0.180478	Hoxd9	ENSMUST00000150528.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000118976.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000146609.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9
mm10_v2_chr3_-_49757257_49757316	0.177632	Hoxd9	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr7_-_34313531_34313568	0.175718	Hoxd9	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr1_+_183388981_183388981	0.148985	Hoxd9	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr3_-_66296807_66296837	0.134748	Hoxd9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr5_-_113310697_113310727	0.13004	Hoxd9	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr2_+_11172080_11172140	0.128896	Hoxd9	ENSMUST00000114853.1|Prkcq|ENSMUSG00000026778.7|protein kinase C, theta
mm10_v2_chr2_+_155751117_155751284	0.127057	Hoxd9	ENSMUST00000029140.5|Procr|ENSMUSG00000027611.6|protein C receptor, endothelial 	ENSMUST00000132608.1|Procr|ENSMUSG00000027611.6|protein C receptor, endothelial
mm10_v2_chr9_-_78109020_78109067	0.125205	Hoxd9	ENSMUST00000001402.7|Fbxo9|ENSMUSG00000001366.8|f-box protein 9
mm10_v2_chr8_-_41016295_41016321	0.118641	Hoxd9	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr19_-_56548122_56548222	0.107841	Hoxd9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr2_-_63184170_63184195	0.106016	Hoxd9	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr14_-_118923070_118923167	0.102662	Hoxd9	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr6_+_48537560_48537622	0.0997627	Hoxd9	ENSMUST00000040361.5|Atp6v0e2|ENSMUSG00000039347.5|ATPase, H+ transporting, lysosomal V0 subunit E2
mm10_v2_chr9_+_78051938_78051958	0.0833417	Hoxd9	ENSMUST00000024104.7|Gcm1|ENSMUSG00000023333.7|glial cells missing homolog 1 (Drosophila)
mm10_v2_chr2_-_45117349_45117395	0.0809345	Hoxd9	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr9_-_39604124_39604403	0.079787	Hoxd9	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chr2_+_30952955_30953016	0.0784656	Hoxd9	ENSMUST00000028199.5|Tor1b|ENSMUSG00000026848.8|torsin family 1, member B
mm10_v2_chr14_-_75754475_75754563	0.0749905	Hoxd9	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr11_-_109472611_109472688	0.0538996	Hoxd9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr3_+_53845086_53845086	0.0341121	Hoxd9	ENSMUST00000108014.1|Gm10985|ENSMUSG00000078742.1|predicted gene 10985
mm10_v2_chr13_+_58281183_58281196	0.0326712	Hoxd9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr8_+_84723003_84723022	0.0270407	Hoxd9	ENSMUST00000098571.4|G430095P16Rik|ENSMUSG00000074203.4|RIKEN cDNA G430095P16 gene
mm10_v2_chr1_-_162898665_162898728	0.0218098	Hoxd9	ENSMUST00000111510.1|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2 	ENSMUST00000045902.6|Fmo2|ENSMUSG00000040170.7|flavin containing monooxygenase 2
mm10_v2_chr3_+_103171655_103171725	0.0175767	Hoxd9	ENSMUST00000005830.8|Bcas2|ENSMUSG00000005687.8|breast carcinoma amplified sequence 2
mm10_v2_chr1_-_139377041_139377078	0.0059981	Hoxd9	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chrX_+_114474312_114474353	0.00547666	Hoxd9	ENSMUST00000113371.1|Klhl4|ENSMUSG00000025597.7|kelch-like 4 	ENSMUST00000040504.5|Klhl4|ENSMUSG00000025597.7|kelch-like 4
mm10_v2_chr8_+_71887264_71887264	0.000291535	Hoxd9	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
