mm10_v2_chr18_-_66860458_66860485	11.7384	Lhx4	ENSMUST00000057942.2|Mc4r|ENSMUSG00000047259.2|melanocortin 4 receptor
mm10_v2_chr1_+_153665666_153665709	9.44955	Lhx4	ENSMUST00000111814.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111810.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr15_-_93595877_93595909	9.3196	Lhx4	ENSMUST00000048982.4|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr16_-_22161450_22161450	6.53967	Lhx4	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr10_-_64090241_64090262	6.40884	Lhx4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr1_+_153665587_153665595	6.32024	Lhx4	ENSMUST00000147700.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr10_-_64090265_64090297	6.04128	Lhx4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr1_+_153665627_153665657	5.61731	Lhx4	ENSMUST00000147482.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr9_+_118478182_118478212	5.25912	Lhx4	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr9_+_118478344_118478451	5.15804	Lhx4	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr17_+_17402672_17402771	4.80517	Lhx4	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr4_+_102589687_102589843	4.21527	Lhx4	ENSMUST00000097949.4|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific 	ENSMUST00000106901.1|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr14_+_75455957_75455996	4.15071	Lhx4	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr10_-_63927434_63927434	4.10842	Lhx4	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr15_-_64922290_64922315	3.95271	Lhx4	ENSMUST00000023007.5|Adcy8|ENSMUSG00000022376.7|adenylate cyclase 8
mm10_v2_chr7_+_66839726_66839750	3.88251	Lhx4	ENSMUST00000098382.3|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr7_+_66839752_66839813	3.77606	Lhx4	ENSMUST00000107478.1|Adamts17|ENSMUSG00000058145.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
mm10_v2_chr2_+_61804453_61804538	3.26471	Lhx4	ENSMUST00000048934.8|Tbr1|ENSMUSG00000035033.9|T-box brain gene 1
mm10_v2_chr6_+_96115249_96115311	3.25054	Lhx4	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr8_-_109251698_109251728	3.02603	Lhx4	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr4_-_97778042_97778071	2.76943	Lhx4	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr17_-_48432723_48432741	2.7067	Lhx4	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr9_-_22259887_22259949	2.5924	Lhx4	ENSMUST00000086281.4|Zfp599|ENSMUSG00000062794.8|zinc finger protein 599
mm10_v2_chr13_-_89742244_89742334	2.39346	Lhx4	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr13_+_20090538_20090633	2.38386	Lhx4	ENSMUST00000072519.5|Elmo1|ENSMUSG00000041112.9|engulfment and cell motility 1
mm10_v2_chr13_+_20090500_20090518	2.35692	Lhx4	ENSMUST00000165249.2|Elmo1|ENSMUSG00000041112.9|engulfment and cell motility 1
mm10_v2_chr4_-_82505707_82505739	2.29381	Lhx4	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr1_+_72284367_72284419	2.2095	Lhx4	ENSMUST00000027380.5|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169 	ENSMUST00000141783.1|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169
mm10_v2_chr4_+_97777780_97777834	2.15604	Lhx4	ENSMUST00000107062.2|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000052018.5|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000107057.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr10_-_63421739_63421739	2.15292	Lhx4	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr1_-_172027251_172027268	2.09801	Lhx4	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chrX_-_143933089_143933142	1.98595	Lhx4	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr9_-_15301555_15301607	1.95681	Lhx4	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr2_+_20737306_20737321	1.92912	Lhx4	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr3_+_102734496_102734530	1.91725	Lhx4	ENSMUST00000029451.5|Tspan2|ENSMUSG00000027858.7|tetraspanin 2
mm10_v2_chr2_+_68104671_68104671	1.89564	Lhx4	ENSMUST00000042456.3|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chrX_+_150547375_150547459	1.84618	Lhx4	ENSMUST00000066337.6|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid 	ENSMUST00000112715.1|Alas2|ENSMUSG00000025270.7|aminolevulinic acid synthase 2, erythroid
mm10_v2_chr1_-_172027269_172027313	1.73346	Lhx4	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr10_+_37139558_37139558	1.71042	Lhx4	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr4_-_82505749_82505802	1.6929	Lhx4	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr18_-_56975333_56975376	1.64643	Lhx4	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr10_+_79996479_79996505	1.58656	Lhx4	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr2_-_166155624_166155671	1.5209	Lhx4	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr2_-_166155272_166155286	1.47354	Lhx4	ENSMUST00000088086.3|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr12_-_12941827_12941914	1.31475	Lhx4	ENSMUST00000043396.7|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr11_+_59306920_59306935	1.27098	Lhx4	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr9_+_113812547_113812621	1.2703	Lhx4	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr15_-_103215285_103215366	1.2301	Lhx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr7_+_39588931_39588931	1.22009	Lhx4	ENSMUST00000178791.1|Gm2058|ENSMUSG00000074903.4|predicted gene 2058 	ENSMUST00000098511.3|Gm2058|ENSMUSG00000074903.4|predicted gene 2058
mm10_v2_chr15_+_25752860_25752979	1.18563	Lhx4	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chrX_-_143933204_143933311	1.17382	Lhx4	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr4_+_107253919_107253939	1.14887	Lhx4	ENSMUST00000046558.7|Hspb11|ENSMUSG00000063172.7|heat shock protein family B (small), member 11
mm10_v2_chr13_+_93304799_93304935	1.09158	Lhx4	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr17_-_34862473_34862535	1.09007	Lhx4	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr4_+_107253887_107253903	1.08152	Lhx4	ENSMUST00000106749.1|Hspb11|ENSMUSG00000063172.7|heat shock protein family B (small), member 11
mm10_v2_chr4_-_82505274_82505358	1.0681	Lhx4	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_58499398_58499409	1.05209	Lhx4	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr12_-_27342696_27342726	0.980689	Lhx4	ENSMUST00000079063.5|Sox11|ENSMUSG00000063632.5|SRY-box containing gene 11
mm10_v2_chr6_+_72097561_72097630	0.96416	Lhx4	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr12_+_24974914_24974948	0.959353	Lhx4	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr5_-_118244861_118245116	0.927954	Lhx4	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr12_+_3954943_3954957	0.922386	Lhx4	ENSMUST00000020990.5|Pomc|ENSMUSG00000020660.5|pro-opiomelanocortin-alpha
mm10_v2_chrX_-_74246534_74246556	0.921489	Lhx4	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr1_-_168432270_168432347	0.916292	Lhx4	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chrX_+_16619698_16619758	0.895202	Lhx4	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr2_+_23069210_23069327	0.890292	Lhx4	ENSMUST00000155602.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr6_+_136518820_136518851	0.889368	Lhx4	ENSMUST00000032335.6|Atf7ip|ENSMUSG00000030213.6|activating transcription factor 7 interacting protein
mm10_v2_chr2_-_63184170_63184195	0.871214	Lhx4	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_+_34999046_34999069	0.860388	Lhx4	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr2_-_112480817_112480817	0.858253	Lhx4	ENSMUST00000099589.2|Chrm5|ENSMUSG00000074939.2|cholinergic receptor, muscarinic 5
mm10_v2_chr17_+_34592248_34592329	0.836155	Lhx4	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr13_+_67833235_67833235	0.820586	Lhx4	ENSMUST00000060609.7|Gm10037|ENSMUSG00000058246.6|predicted gene 10037
mm10_v2_chr15_+_31224371_31224400	0.820044	Lhx4	ENSMUST00000044524.9|Dap|ENSMUSG00000039168.9|death-associated protein
mm10_v2_chr2_-_72986716_72986716	0.801654	Lhx4	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr13_+_93304066_93304138	0.800754	Lhx4	ENSMUST00000109493.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr4_-_35845204_35845204	0.794153	Lhx4	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr13_-_58354862_58354862	0.792179	Lhx4	ENSMUST00000043605.5|Kif27|ENSMUSG00000060176.3|kinesin family member 27
mm10_v2_chr11_+_58171648_58171688	0.789682	Lhx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr3_+_55782500_55782521	0.767776	Lhx4	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr9_+_108339048_108339080	0.763396	Lhx4	ENSMUST00000082429.5|Gpx1|ENSMUSG00000063856.6|glutathione peroxidase 1
mm10_v2_chr15_+_98571004_98571026	0.724355	Lhx4	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr5_+_34999070_34999086	0.724103	Lhx4	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr1_-_13372434_13372457	0.716115	Lhx4	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr1_-_93445642_93445686	0.710024	Lhx4	ENSMUST00000042498.7|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr10_+_116143881_116143903	0.700698	Lhx4	ENSMUST00000105271.2|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr16_-_92400067_92400083	0.697392	Lhx4	ENSMUST00000023672.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr13_-_52530827_52530841	0.669846	Lhx4	ENSMUST00000057442.6|Diras2|ENSMUSG00000047842.6|DIRAS family, GTP-binding RAS-like 2
mm10_v2_chr11_+_6560183_6560240	0.668711	Lhx4	ENSMUST00000109722.2|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr5_+_29195983_29196032	0.665751	Lhx4	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr8_-_106573461_106573462	0.661653	Lhx4	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr5_+_34999111_34999184	0.661282	Lhx4	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr7_-_38019505_38019552	0.629946	Lhx4	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr16_-_22857514_22857576	0.622484	Lhx4	ENSMUST00000004576.6|Tbccd1|ENSMUSG00000004462.6|TBCC domain containing 1
mm10_v2_chr16_-_16829276_16829349	0.616788	Lhx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr2_-_63184253_63184292	0.612375	Lhx4	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr3_-_67515487_67515523	0.60409	Lhx4	ENSMUST00000178314.1|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1 	ENSMUST00000054825.4|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1
mm10_v2_chr7_-_5014645_5014697	0.572257	Lhx4	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr12_-_84617326_84617466	0.565704	Lhx4	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr3_-_141982224_141982264	0.543938	Lhx4	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr6_+_37870786_37870882	0.52471	Lhx4	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr1_-_185329331_185329401	0.521204	Lhx4	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr15_+_81744848_81744848	0.516208	Lhx4	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr16_-_64771146_64771184	0.510433	Lhx4	ENSMUST00000076991.6|4930453N24Rik|ENSMUSG00000059920.9|RIKEN cDNA 4930453N24 gene
mm10_v2_chr2_-_28916412_28916440	0.503577	Lhx4	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr10_+_23797052_23797200	0.491848	Lhx4	ENSMUST00000133289.1|Slc18b1|ENSMUSG00000037455.10|solute carrier family 18, subfamily B, member 1
mm10_v2_chr7_-_73541738_73541758	0.462281	Lhx4	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr11_+_82781108_82781224	0.461678	Lhx4	ENSMUST00000092849.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000021039.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000080461.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173347.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173727.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173009.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000131537.2|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173722.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent
mm10_v2_chr7_+_126781483_126781483	0.457283	Lhx4	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr2_-_28916668_28916668	0.451584	Lhx4	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr15_-_56694525_56694554	0.432065	Lhx4	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr5_-_5266038_5266292	0.429181	Lhx4	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr7_-_81493725_81493783	0.425776	Lhx4	ENSMUST00000119121.1|Ap3b2|ENSMUSG00000062444.8|adaptor-related protein complex 3, beta 2 subunit
mm10_v2_chr18_+_34758890_34758906	0.417796	Lhx4	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr8_+_34807287_34807310	0.415887	Lhx4	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr6_+_38381469_38381528	0.413082	Lhx4	ENSMUST00000162554.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26 	ENSMUST00000161751.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26
mm10_v2_chr1_-_158356258_158356313	0.406703	Lhx4	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr5_+_9266097_9266202	0.405315	Lhx4	ENSMUST00000134991.1|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene 	ENSMUST00000069538.7|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene 	ENSMUST00000115348.2|9330182L06Rik|ENSMUSG00000056004.10|RIKEN cDNA 9330182L06 gene
mm10_v2_chr11_+_60537978_60538074	0.404747	Lhx4	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr7_+_100159241_100159315	0.401821	Lhx4	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr19_+_46396885_46397004	0.397586	Lhx4	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr14_-_96519067_96519102	0.382786	Lhx4	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chrX_-_160138375_160138435	0.367033	Lhx4	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr11_-_98193260_98193298	0.364685	Lhx4	ENSMUST00000092735.5|Med1|ENSMUSG00000018160.9|mediator complex subunit 1 	ENSMUST00000107545.2|Med1|ENSMUSG00000018160.9|mediator complex subunit 1
mm10_v2_chrX_-_74246364_74246438	0.335599	Lhx4	ENSMUST00000130007.1|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr5_-_3647806_3648009	0.330694	Lhx4	ENSMUST00000119783.1|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1 	ENSMUST00000007559.8|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1
mm10_v2_chr4_+_116596672_116596730	0.326822	Lhx4	ENSMUST00000051869.7|Ccdc17|ENSMUSG00000034035.12|coiled-coil domain containing 17
mm10_v2_chr2_-_73580288_73580353	0.324424	Lhx4	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr3_+_76593550_76593550	0.315614	Lhx4	ENSMUST00000162471.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr7_-_49636847_49636851	0.312797	Lhx4	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr11_-_98329641_98329654	0.310758	Lhx4	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr19_+_46397009_46397033	0.309765	Lhx4	ENSMUST00000118440.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr2_+_163658370_163658510	0.304876	Lhx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr2_-_7396192_7396241	0.304674	Lhx4	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr7_+_126976338_126976400	0.302835	Lhx4	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr2_-_7395879_7395912	0.294034	Lhx4	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr9_+_119063429_119063467	0.293692	Lhx4	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr11_+_84129649_84129705	0.275986	Lhx4	ENSMUST00000133811.1|Acaca|ENSMUSG00000020532.12|acetyl-Coenzyme A carboxylase alpha
mm10_v2_chr9_-_44802951_44802961	0.275775	Lhx4	ENSMUST00000044694.6|Ttc36|ENSMUSG00000039438.6|tetratricopeptide repeat domain 36
mm10_v2_chr6_+_11926758_11926790	0.27146	Lhx4	ENSMUST00000133776.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
mm10_v2_chr1_-_163289214_163289235	0.267471	Lhx4	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr16_-_45844303_45844381	0.251145	Lhx4	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr19_+_10015016_10015055	0.248177	Lhx4	ENSMUST00000137637.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1 	ENSMUST00000149967.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr4_-_119294520_119294604	0.244805	Lhx4	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr17_-_32822200_32822200	0.242329	Lhx4	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr11_-_31671863_31671885	0.205465	Lhx4	ENSMUST00000058060.7|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr14_+_58893465_58893506	0.198332	Lhx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr4_+_95557494_95557544	0.198159	Lhx4	ENSMUST00000079223.4|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000177394.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chrX_+_134686519_134686536	0.195506	Lhx4	ENSMUST00000124226.2|Armcx4|ENSMUSG00000049804.9|armadillo repeat containing, X-linked 4
mm10_v2_chr3_-_67375163_67375163	0.19403	Lhx4	ENSMUST00000166353.1|Gm17402|ENSMUSG00000090408.1|predicted gene, 17402
mm10_v2_chr11_-_31671727_31671856	0.183434	Lhx4	ENSMUST00000109415.1|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr7_+_130774069_130774185	0.18109	Lhx4	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr12_+_10390756_10390836	0.166834	Lhx4	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr16_+_11406618_11406675	0.166009	Lhx4	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr8_+_34054622_34054647	0.162674	Lhx4	ENSMUST00000149618.1|Gm9951|ENSMUSG00000054618.8|predicted gene 9951
mm10_v2_chr8_-_61902669_61902713	0.160489	Lhx4	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr16_-_21995478_21995542	0.153114	Lhx4	ENSMUST00000074230.4|Liph|ENSMUSG00000044626.6|lipase, member H 	ENSMUST00000060673.6|Liph|ENSMUSG00000044626.6|lipase, member H
mm10_v2_chr17_+_29274078_29274129	0.145235	Lhx4	ENSMUST00000149405.2|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004
mm10_v2_chr2_-_174346712_174346712	0.133471	Lhx4	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr16_-_45844228_45844236	0.128096	Lhx4	ENSMUST00000076333.5|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr14_-_104522615_104522707	0.123726	Lhx4	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr2_-_32424005_32424029	0.121352	Lhx4	ENSMUST00000113307.2|Slc25a25|ENSMUSG00000026819.9|solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25
mm10_v2_chr16_-_74411292_74411430	0.118916	Lhx4	ENSMUST00000117200.1|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr18_+_22345089_22345089	0.117308	Lhx4	ENSMUST00000120223.1|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila) 	ENSMUST00000097655.3|Asxl3|ENSMUSG00000045215.10|additional sex combs like 3 (Drosophila)
mm10_v2_chr16_-_90810365_90810429	0.114264	Lhx4	ENSMUST00000140920.1|Urb1|ENSMUSG00000039929.8|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm10_v2_chr14_+_74735641_74735663	0.114122	Lhx4	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr15_-_98221056_98221056	0.107208	Lhx4	ENSMUST00000170618.1|Olfr287|ENSMUSG00000090129.2|olfactory receptor 287 	ENSMUST00000141911.1|Olfr287|ENSMUSG00000090129.2|olfactory receptor 287
mm10_v2_chr9_-_49798905_49798931	0.0953229	Lhx4	ENSMUST00000114476.2|Ncam1|ENSMUSG00000039542.9|neural cell adhesion molecule 1
mm10_v2_chr5_-_17888884_17888959	0.0932864	Lhx4	ENSMUST00000169095.1|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr4_+_65124174_65124174	0.0910682	Lhx4	ENSMUST00000084501.3|Pappa|ENSMUSG00000028370.7|pregnancy-associated plasma protein A
mm10_v2_chr16_-_56024628_56024668	0.0902981	Lhx4	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr15_+_16778101_16778101	0.0628204	Lhx4	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chr4_+_108719649_108719649	0.0538248	Lhx4	ENSMUST00000178992.1|3110021N24Rik|ENSMUSG00000094958.1|RIKEN cDNA 3110021N24 gene
mm10_v2_chr1_-_36273425_36273443	0.0476573	Lhx4	ENSMUST00000056946.6|Neurl3|ENSMUSG00000047180.6|neuralized homolog 3 homolog (Drosophila)
mm10_v2_chr19_+_44493472_44493472	0.0400822	Lhx4	ENSMUST00000041163.4|Wnt8b|ENSMUSG00000036961.4|wingless related MMTV integration site 8b
mm10_v2_chrX_-_8252304_8252333	0.0286564	Lhx4	ENSMUST00000115594.1|Ftsj1|ENSMUSG00000031171.5|FtsJ homolog 1 (E. coli)
mm10_v2_chr19_+_38395980_38396022	0.0244177	Lhx4	ENSMUST00000054098.2|Slc35g1|ENSMUSG00000044026.2|solute carrier family 35, member G1
mm10_v2_chr15_-_50889691_50889714	0.0210743	Lhx4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr10_-_76110956_76110962	0.0205737	Lhx4	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr4_-_147809788_147809840	0.0149661	Lhx4	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr3_+_24333046_24333046	0.0094925	Lhx4	ENSMUST00000077389.6|Gm7536|ENSMUSG00000057036.6|predicted gene 7536
mm10_v2_chr5_+_96209463_96209493	0.00780936	Lhx4	ENSMUST00000117766.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr5_+_96210115_96210161	0.0015074	Lhx4	ENSMUST00000036437.6|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1 	ENSMUST00000121477.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
