mm10_v2_chr15_+_40655020_40655054	3.1326	Runx3	ENSMUST00000053467.4|Zfpm2|ENSMUSG00000022306.8|zinc finger protein, multitype 2
mm10_v2_chr3_+_121953213_121953295	2.64621	Runx3	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr18_-_47368446_47368486	1.55888	Runx3	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chrX_-_73869804_73869905	1.15177	Runx3	ENSMUST00000066576.5|L1cam|ENSMUSG00000031391.12|L1 cell adhesion molecule 	ENSMUST00000114430.1|L1cam|ENSMUSG00000031391.12|L1 cell adhesion molecule
mm10_v2_chr11_+_75532127_75532151	1.15156	Runx3	ENSMUST00000127226.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr11_+_75532099_75532125	1.14967	Runx3	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr5_+_21424934_21425013	1.11363	Runx3	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr13_-_51734695_51734763	1.02103	Runx3	ENSMUST00000110039.1|Sema4d|ENSMUSG00000021451.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
mm10_v2_chr7_+_35802593_35802593	1.01402	Runx3	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr1_-_24100306_24100355	0.909485	Runx3	ENSMUST00000027337.8|Fam135a|ENSMUSG00000026153.9|family with sequence similarity 135, member A
mm10_v2_chr6_-_100671126_100671178	0.809701	Runx3	ENSMUST00000089245.6|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000113312.2|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae) 	ENSMUST00000170667.1|Shq1|ENSMUSG00000035378.11|SHQ1 homolog (S. cerevisiae)
mm10_v2_chr10_+_128083273_128083309	0.788621	Runx3	ENSMUST00000026459.5|Atp5b|ENSMUSG00000025393.6|ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
mm10_v2_chr13_-_25020289_25020379	0.76005	Runx3	ENSMUST00000021772.2|Mrs2|ENSMUSG00000021339.3|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
mm10_v2_chr7_-_35802968_35803007	0.698112	Runx3	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chrX_+_99136119_99136138	0.659103	Runx3	ENSMUST00000052839.6|Efnb1|ENSMUSG00000031217.8|ephrin B1
mm10_v2_chr17_+_27556613_27556635	0.657507	Runx3	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr17_+_27556641_27556658	0.653733	Runx3	ENSMUST00000119486.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118599.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr17_+_27556668_27556690	0.625299	Runx3	ENSMUST00000117254.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118570.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr10_-_62602261_62602298	0.613228	Runx3	ENSMUST00000045866.7|Ddx21|ENSMUSG00000020075.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
mm10_v2_chrX_-_98890781_98890991	0.600111	Runx3	ENSMUST00000113826.1|Ophn1|ENSMUSG00000031214.7|oligophrenin 1 	ENSMUST00000033560.2|Ophn1|ENSMUSG00000031214.7|oligophrenin 1 	ENSMUST00000142267.1|Ophn1|ENSMUSG00000031214.7|oligophrenin 1
mm10_v2_chr12_+_26469204_26469204	0.591	Runx3	ENSMUST00000020969.3|Cmpk2|ENSMUSG00000020638.7|cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
mm10_v2_chr11_-_5762358_5762404	0.565894	Runx3	ENSMUST00000120306.1|Urgcp|ENSMUSG00000049680.11|upregulator of cell proliferation 	ENSMUST00000170116.1|Urgcp|ENSMUSG00000049680.11|upregulator of cell proliferation 	ENSMUST00000053427.4|Urgcp|ENSMUSG00000049680.11|upregulator of cell proliferation 	ENSMUST00000118076.1|Urgcp|ENSMUSG00000049680.11|upregulator of cell proliferation
mm10_v2_chr4_-_133672601_133672652	0.520024	Runx3	ENSMUST00000062118.4|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V 	ENSMUST00000067902.6|Pigv|ENSMUSG00000043257.9|phosphatidylinositol glycan anchor biosynthesis, class V
mm10_v2_chr11_-_23665862_23665959	0.50768	Runx3	ENSMUST00000020523.3|Pex13|ENSMUSG00000020283.5|peroxisomal biogenesis factor 13
mm10_v2_chr8_+_27023793_27023810	0.489092	Runx3	ENSMUST00000033873.7|Erlin2|ENSMUSG00000031483.7|ER lipid raft associated 2
mm10_v2_chr8_+_4243264_4243387	0.475463	Runx3	ENSMUST00000110996.1|Map2k7|ENSMUSG00000002948.12|mitogen-activated protein kinase kinase 7
mm10_v2_chr10_-_81001338_81001378	0.467698	Runx3	ENSMUST00000099462.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000118233.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr7_+_141216626_141216700	0.458086	Runx3	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr17_+_8165501_8165540	0.449591	Runx3	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr15_+_8169067_8169106	0.448476	Runx3	ENSMUST00000110617.1|2410089E03Rik|ENSMUSG00000039801.6|RIKEN cDNA 2410089E03 gene
mm10_v2_chr4_-_120570252_120570299	0.436085	Runx3	ENSMUST00000030381.7|Ctps|ENSMUSG00000028633.7|cytidine 5'-triphosphate synthase
mm10_v2_chr3_+_95658771_95658857	0.430506	Runx3	ENSMUST00000178686.1|Mcl1|ENSMUSG00000038612.10|myeloid cell leukemia sequence 1
mm10_v2_chr8_-_27128615_27128687	0.401039	Runx3	ENSMUST00000033877.4|Brf2|ENSMUSG00000031487.4|BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
mm10_v2_chr9_+_109931774_109931798	0.364491	Runx3	ENSMUST00000169851.2|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr7_-_141437587_141437650	0.353544	Runx3	ENSMUST00000172654.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106006.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr7_-_78783026_78783066	0.351375	Runx3	ENSMUST00000032841.5|Mrpl46|ENSMUSG00000030612.5|mitochondrial ribosomal protein L46
mm10_v2_chr5_+_121397936_121398004	0.340846	Runx3	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr11_-_70220794_70220832	0.335341	Runx3	ENSMUST00000159867.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr11_-_70410010_70410042	0.333625	Runx3	ENSMUST00000019065.3|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1 	ENSMUST00000135148.1|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1
mm10_v2_chr9_-_108094459_108094487	0.322027	Runx3	ENSMUST00000081309.7|Apeh|ENSMUSG00000032590.9|acylpeptide hydrolase
mm10_v2_chr17_+_35879770_35879824	0.305569	Runx3	ENSMUST00000025292.8|Dhx16|ENSMUSG00000024422.8|DEAH (Asp-Glu-Ala-His) box polypeptide 16
mm10_v2_chr4_+_19575139_19575216	0.304356	Runx3	ENSMUST00000108253.1|Rmdn1|ENSMUSG00000028229.5|regulator of microtubule dynamics 1 	ENSMUST00000029888.3|Rmdn1|ENSMUSG00000028229.5|regulator of microtubule dynamics 1
mm10_v2_chr11_-_70220776_70220790	0.302956	Runx3	ENSMUST00000141290.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr11_-_86357570_86357614	0.298911	Runx3	ENSMUST00000043624.8|Med13|ENSMUSG00000034297.8|mediator complex subunit 13
mm10_v2_chr5_-_25223153_25223153	0.283537	Runx3	ENSMUST00000066954.1|E130116L18Rik|ENSMUSG00000054116.1|RIKEN cDNA E130116L18 gene
mm10_v2_chr3_+_122245557_122245578	0.28188	Runx3	ENSMUST00000029769.7|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr9_+_106429537_106429548	0.279029	Runx3	ENSMUST00000059802.6|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr3_+_122245625_122245722	0.277602	Runx3	ENSMUST00000178826.1|Gclm|ENSMUSG00000028124.9|glutamate-cysteine ligase, modifier subunit
mm10_v2_chr13_-_14063395_14063436	0.268043	Runx3	ENSMUST00000170957.1|Ggps1|ENSMUSG00000021302.9|geranylgeranyl diphosphate synthase 1
mm10_v2_chr9_+_106429399_106429457	0.26312	Runx3	ENSMUST00000150576.1|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr17_+_30005029_30005098	0.256563	Runx3	ENSMUST00000057897.7|Zfand3|ENSMUSG00000044477.10|zinc finger, AN1-type domain 3
mm10_v2_chr6_-_99632376_99632376	0.241056	Runx3	ENSMUST00000176255.1|Gm20696|ENSMUSG00000030068.3|predicted gene 20696
mm10_v2_chr13_+_21735055_21735070	0.235487	Runx3	ENSMUST00000087714.4|Hist1h4j|ENSMUSG00000067455.4|histone cluster 1, H4j
mm10_v2_chr3_+_95658714_95658723	0.232755	Runx3	ENSMUST00000037947.8|Mcl1|ENSMUSG00000038612.10|myeloid cell leukemia sequence 1
mm10_v2_chr5_+_25222862_25222951	0.214419	Runx3	ENSMUST00000045737.7|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr4_-_117887279_117887290	0.210389	Runx3	ENSMUST00000132073.1|Atp6v0b|ENSMUSG00000033379.7|ATPase, H+ transporting, lysosomal V0 subunit B
mm10_v2_chr11_+_75679259_75679327	0.198212	Runx3	ENSMUST00000017920.7|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108426.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000108425.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian) 	ENSMUST00000093115.3|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr8_-_54724474_54724504	0.197224	Runx3	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr4_-_117887292_117887353	0.193875	Runx3	ENSMUST00000150204.1|Atp6v0b|ENSMUSG00000033379.7|ATPase, H+ transporting, lysosomal V0 subunit B 	ENSMUST00000147845.1|Atp6v0b|ENSMUSG00000033379.7|ATPase, H+ transporting, lysosomal V0 subunit B 	ENSMUST00000036380.7|Atp6v0b|ENSMUSG00000033379.7|ATPase, H+ transporting, lysosomal V0 subunit B 	ENSMUST00000136596.1|Atp6v0b|ENSMUSG00000033379.7|ATPase, H+ transporting, lysosomal V0 subunit B
mm10_v2_chr13_-_76018524_76018712	0.176639	Runx3	ENSMUST00000050997.1|Rfesd|ENSMUSG00000043190.7|Rieske (Fe-S) domain containing 	ENSMUST00000179078.1|Rfesd|ENSMUSG00000043190.7|Rieske (Fe-S) domain containing 	ENSMUST00000167271.1|Rfesd|ENSMUSG00000043190.7|Rieske (Fe-S) domain containing
mm10_v2_chr11_-_32267547_32267707	0.167017	Runx3	ENSMUST00000109389.2|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000129010.1|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000020530.5|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3
mm10_v2_chr1_+_159232299_159232326	0.166679	Runx3	ENSMUST00000076894.5|Rfwd2|ENSMUSG00000040782.7|ring finger and WD repeat domain 2
mm10_v2_chr14_-_72709534_72709549	0.165622	Runx3	ENSMUST00000162478.1|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr11_+_101009452_101009528	0.156902	Runx3	ENSMUST00000044721.6|Atp6v0a1|ENSMUSG00000019302.10|ATPase, H+ transporting, lysosomal V0 subunit A1 	ENSMUST00000103110.3|Atp6v0a1|ENSMUSG00000019302.10|ATPase, H+ transporting, lysosomal V0 subunit A1 	ENSMUST00000168757.2|Atp6v0a1|ENSMUSG00000019302.10|ATPase, H+ transporting, lysosomal V0 subunit A1
mm10_v2_chr11_-_70220969_70221027	0.153968	Runx3	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr18_-_77713978_77714010	0.146179	Runx3	ENSMUST00000074653.4|8030462N17Rik|ENSMUSG00000047466.9|RIKEN cDNA 8030462N17 gene
mm10_v2_chr7_+_28808795_28808832	0.126234	Runx3	ENSMUST00000172529.1|Hnrnpl|ENSMUSG00000015165.10|heterogeneous nuclear ribonucleoprotein L
mm10_v2_chr6_-_136804414_136804431	0.123228	Runx3	ENSMUST00000179285.1|Hist4h4|ENSMUSG00000096010.1|histone cluster 4, H4
mm10_v2_chr4_-_70410422_70410463	0.118215	Runx3	ENSMUST00000144099.1|Cdk5rap2|ENSMUSG00000039298.10|CDK5 regulatory subunit associated protein 2
mm10_v2_chr7_-_142095266_142095306	0.113075	Runx3	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr12_+_98628126_98628202	0.108755	Runx3	ENSMUST00000048402.5|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101144.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7 	ENSMUST00000101146.3|Spata7|ENSMUSG00000021007.7|spermatogenesis associated 7
mm10_v2_chr8_+_71908595_71908657	0.108725	Runx3	ENSMUST00000110002.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882 	ENSMUST00000131544.1|Zfp617|ENSMUSG00000066880.9|zinc finger protein 617 	ENSMUST00000125802.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882
mm10_v2_chr7_+_78783119_78783119	0.105176	Runx3	ENSMUST00000032840.4|Mrps11|ENSMUSG00000030611.4|mitochondrial ribosomal protein S11
mm10_v2_chr9_+_109931458_109931488	0.0853334	Runx3	ENSMUST00000072772.5|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4 	ENSMUST00000035055.8|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr18_-_34651703_34651741	0.0536265	Runx3	ENSMUST00000025228.5|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23 	ENSMUST00000133181.1|Cdc23|ENSMUSG00000024370.10|CDC23 cell division cycle 23
mm10_v2_chr16_-_94526830_94526839	0.0523269	Runx3	ENSMUST00000023615.6|Dscr3|ENSMUSG00000022898.6|Down syndrome critical region gene 3
mm10_v2_chr9_+_109931863_109931885	0.0419734	Runx3	ENSMUST00000165876.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr7_+_3617357_3617389	0.032484	Runx3	ENSMUST00000076657.4|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 	ENSMUST00000108644.1|Ndufa3|ENSMUSG00000035674.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3
mm10_v2_chr12_-_98259416_98259459	0.0288686	Runx3	ENSMUST00000021390.7|Galc|ENSMUSG00000021003.9|galactosylceramidase
mm10_v2_chr2_-_50296680_50296801	0.0234665	Runx3	ENSMUST00000144143.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000102769.4|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000133768.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm10_v2_chr9_-_78481724_78481751	0.00683633	Runx3	ENSMUST00000042235.8|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
