mm10_v2_chr16_+_91269759_91269778	1.31327	Brca1	ENSMUST00000056882.5|Olig1|ENSMUSG00000046160.5|oligodendrocyte transcription factor 1
mm10_v2_chrX_+_169685191_169685250	1.01654	Brca1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr3_+_5218546_5218561	0.401441	Brca1	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr8_-_11008458_11008458	0.36707	Brca1	ENSMUST00000040514.6|Irs2|ENSMUSG00000038894.6|insulin receptor substrate 2
mm10_v2_chr3_+_5218516_5218544	0.366267	Brca1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr3_-_95882031_95882074	0.34916	Brca1	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr6_-_23248264_23248390	0.347731	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr19_-_24225015_24225033	0.312861	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr3_+_5218589_5218614	0.301497	Brca1	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr5_+_66968961_66969132	0.299867	Brca1	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr11_-_109472611_109472688	0.268491	Brca1	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr18_-_15063560_15063617	0.262361	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr10_-_42276744_42276763	0.247927	Brca1	ENSMUST00000105502.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000105501.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr16_-_11066141_11066165	0.246951	Brca1	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr3_+_109573907_109573990	0.246438	Brca1	ENSMUST00000106576.2|Vav3|ENSMUSG00000033721.10|vav 3 oncogene
mm10_v2_chr10_-_42276688_42276743	0.246407	Brca1	ENSMUST00000175881.1|Foxo3|ENSMUSG00000048756.5|forkhead box O3 	ENSMUST00000056974.3|Foxo3|ENSMUSG00000048756.5|forkhead box O3
mm10_v2_chr5_+_66968559_66968577	0.243726	Brca1	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr12_-_24493656_24493656	0.234868	Brca1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr11_-_101171302_101171353	0.225032	Brca1	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr17_-_34028044_34028076	0.218567	Brca1	ENSMUST00000045467.7|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6 	ENSMUST00000114303.3|H2-Ke6|ENSMUSG00000073422.4|H2-K region expressed gene 6
mm10_v2_chr11_-_98625661_98625661	0.213538	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chr9_+_44773191_44773263	0.208602	Brca1	ENSMUST00000147559.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr12_-_69159109_69159186	0.193274	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr10_-_128923439_128923545	0.19164	Brca1	ENSMUST00000153731.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1 	ENSMUST00000026405.3|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr3_-_61365951_61365951	0.19127	Brca1	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr11_+_59306920_59306935	0.191002	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr10_-_127121125_127121160	0.179535	Brca1	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr14_-_70520254_70520268	0.178184	Brca1	ENSMUST00000022693.7|Bmp1|ENSMUSG00000022098.9|bone morphogenetic protein 1
mm10_v2_chr11_-_102230091_102230124	0.17516	Brca1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chrM_+_8600_8616	0.174945	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr7_+_129591859_129591871	0.168824	Brca1	ENSMUST00000084519.5|Wdr11|ENSMUSG00000042055.7|WD repeat domain 11
mm10_v2_chrX_+_71663665_71663671	0.164835	Brca1	ENSMUST00000070449.5|Gpr50|ENSMUSG00000056380.7|G-protein-coupled receptor 50
mm10_v2_chrX_+_166344692_166344770	0.164594	Brca1	ENSMUST00000112223.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112224.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112229.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112228.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112227.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b 	ENSMUST00000112226.2|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr3_+_87906321_87906356	0.16226	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr11_-_102230127_102230166	0.160502	Brca1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr2_-_77170592_77170645	0.157235	Brca1	ENSMUST00000164114.2|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141 	ENSMUST00000049544.7|Ccdc141|ENSMUSG00000044033.10|coiled-coil domain containing 141
mm10_v2_chr7_+_44468051_44468072	0.156653	Brca1	ENSMUST00000118493.1|Josd2|ENSMUSG00000038695.6|Josephin domain containing 2
mm10_v2_chr8_+_25017211_25017305	0.155776	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr11_+_70970467_70970517	0.155161	Brca1	ENSMUST00000178822.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000108529.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000169965.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein 	ENSMUST00000167509.1|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr5_+_146833106_146833210	0.155056	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr2_-_105399286_105399319	0.153177	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr10_-_128923948_128924035	0.152119	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr5_+_146832890_146832947	0.148793	Brca1	ENSMUST00000035983.5|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chr7_+_44468020_44468045	0.148592	Brca1	ENSMUST00000117324.1|Josd2|ENSMUSG00000038695.6|Josephin domain containing 2 	ENSMUST00000120852.1|Josd2|ENSMUSG00000038695.6|Josephin domain containing 2 	ENSMUST00000118628.1|Josd2|ENSMUSG00000038695.6|Josephin domain containing 2
mm10_v2_chr6_-_122340499_122340510	0.146861	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr1_-_75278345_75278440	0.142057	Brca1	ENSMUST00000039534.4|Resp18|ENSMUSG00000033061.9|regulated endocrine-specific protein 18
mm10_v2_chr19_+_55741810_55741842	0.13752	Brca1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr4_-_41464816_41464892	0.137499	Brca1	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr12_+_4082596_4082638	0.136474	Brca1	ENSMUST00000049584.5|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr13_+_100651607_100651631	0.136313	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_109473220_109473294	0.135575	Brca1	ENSMUST00000070872.6|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr6_-_125191535_125191620	0.133298	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chr5_+_136953246_136953406	0.130847	Brca1	ENSMUST00000111094.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast) 	ENSMUST00000111097.1|Fis1|ENSMUSG00000019054.7|fission 1 (mitochondrial outer membrane) homolog (yeast)
mm10_v2_chr5_+_66968416_66968447	0.129416	Brca1	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr12_-_10900296_10900318	0.127126	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr12_+_52097737_52097775	0.12374	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr2_-_113829069_113829121	0.12089	Brca1	ENSMUST00000024005.7|Scg5|ENSMUSG00000023236.7|secretogranin V
mm10_v2_chr1_-_171281181_171281192	0.11911	Brca1	ENSMUST00000073120.4|Ppox|ENSMUSG00000062729.5|protoporphyrinogen oxidase
mm10_v2_chr11_+_78826575_78826618	0.118173	Brca1	ENSMUST00000147875.2|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9 	ENSMUST00000141321.1|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9
mm10_v2_chr17_-_51810866_51810919	0.116444	Brca1	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr2_-_34870921_34870980	0.108984	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr16_+_20589471_20589582	0.107819	Brca1	ENSMUST00000100074.3|Vwa5b2|ENSMUSG00000046613.12|von Willebrand factor A domain containing 5B2 	ENSMUST00000096197.4|Vwa5b2|ENSMUSG00000046613.12|von Willebrand factor A domain containing 5B2
mm10_v2_chr8_-_70700070_70700088	0.106386	Brca1	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr7_+_16816299_16816361	0.106131	Brca1	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr11_+_97703394_97703455	0.105578	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr11_+_6291660_6291687	0.104872	Brca1	ENSMUST00000101554.2|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENSMUST00000093350.3|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chrX_+_150589907_150589996	0.104226	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr9_+_44773027_44773100	0.102737	Brca1	ENSMUST00000125877.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr1_-_165460430_165460487	0.102338	Brca1	ENSMUST00000027856.7|Dcaf6|ENSMUSG00000026571.7|DDB1 and CUL4 associated factor 6
mm10_v2_chr15_+_97964220_97964271	0.102138	Brca1	ENSMUST00000064200.7|Tmem106c|ENSMUSG00000052369.7|transmembrane protein 106C
mm10_v2_chr18_+_36793918_36793937	0.10207	Brca1	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr17_+_40811089_40811133	0.101568	Brca1	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chr13_+_100651328_100651397	0.0996132	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr15_+_102460076_102460108	0.0984145	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chrX_+_150594420_150594478	0.0978823	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chrX_-_101222426_101222563	0.0975753	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr8_-_95853501_95853539	0.0965737	Brca1	ENSMUST00000040481.3|Slc38a7|ENSMUSG00000036534.5|solute carrier family 38, member 7
mm10_v2_chrX_-_150589844_150589861	0.0955747	Brca1	ENSMUST00000112725.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112720.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr3_-_51277470_51277514	0.094094	Brca1	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr19_-_32466575_32466575	0.0926204	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr13_-_100775844_100775899	0.0921145	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr7_-_4996044_4996094	0.089526	Brca1	ENSMUST00000162502.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr11_-_69920581_69920630	0.0886448	Brca1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
mm10_v2_chrX_+_74309089_74309161	0.0883522	Brca1	ENSMUST00000130581.1|Gdi1|ENSMUSG00000015291.4|guanosine diphosphate (GDP) dissociation inhibitor 1
mm10_v2_chr7_+_101896817_101896961	0.0868138	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr15_-_34443508_34443640	0.0858459	Brca1	ENSMUST00000079735.5|Rpl30|ENSMUSG00000058600.7|ribosomal protein L30
mm10_v2_chr3_+_87930256_87930350	0.0856694	Brca1	ENSMUST00000055984.6|Isg20l2|ENSMUSG00000048039.8|interferon stimulated exonuclease gene 20-like 2
mm10_v2_chr3_-_88951146_88951213	0.0848812	Brca1	ENSMUST00000173135.1|Dap3|ENSMUSG00000068921.8|death associated protein 3
mm10_v2_chr6_+_17694005_17694032	0.0845195	Brca1	ENSMUST00000081635.6|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000052113.5|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr9_-_37657189_37657312	0.0826487	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr19_+_10204014_10204014	0.080985	Brca1	ENSMUST00000040372.7|Tmem258|ENSMUSG00000036372.8|transmembrane protein 258
mm10_v2_chr7_-_4996095_4996116	0.0801771	Brca1	ENSMUST00000108572.1|Zfp579|ENSMUSG00000051550.10|zinc finger protein 579
mm10_v2_chr12_+_108894272_108894317	0.078463	Brca1	ENSMUST00000167816.1|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25 	ENSMUST00000047115.7|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25
mm10_v2_chr1_-_153900198_153900210	0.0777206	Brca1	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr10_-_84440591_84440604	0.0775287	Brca1	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr6_-_122340525_122340561	0.0770825	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr19_+_57452900_57452926	0.0770653	Brca1	ENSMUST00000026073.6|Trub1|ENSMUSG00000025086.6|TruB pseudouridine (psi) synthase homolog 1 (E. coli) 	ENSMUST00000026072.3|Trub1|ENSMUSG00000025086.6|TruB pseudouridine (psi) synthase homolog 1 (E. coli)
mm10_v2_chr1_+_192190771_192190821	0.0768501	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr3_-_138131356_138131381	0.0768058	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr2_+_174330006_174330126	0.0765934	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr9_-_109082372_109082414	0.0761193	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chr8_-_105295934_105296098	0.0739321	Brca1	ENSMUST00000057855.3|Exoc3l|ENSMUSG00000043251.5|exocyst complex component 3-like
mm10_v2_chr3_-_90433603_90433636	0.0732396	Brca1	ENSMUST00000029542.5|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3 	ENSMUST00000071488.3|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3
mm10_v2_chr12_+_103388656_103388723	0.0721785	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr2_-_28916668_28916668	0.0720973	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr7_+_27553244_27553302	0.071879	Brca1	ENSMUST00000067386.7|2310022A10Rik|ENSMUSG00000049643.9|RIKEN cDNA 2310022A10 gene
mm10_v2_chr11_+_6291607_6291655	0.0714273	Brca1	ENSMUST00000003461.8|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr11_-_75454656_75454721	0.0704898	Brca1	ENSMUST00000173320.1|Wdr81|ENSMUSG00000045374.12|WD repeat domain 81
mm10_v2_chr6_+_115601907_115601940	0.0694906	Brca1	ENSMUST00000000449.7|Mkrn2|ENSMUSG00000000439.8|makorin, ring finger protein, 2
mm10_v2_chr8_-_107263248_107263248	0.068535	Brca1	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chr5_-_115158169_115158180	0.068436	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr1_+_172148015_172148048	0.0675094	Brca1	ENSMUST00000074144.5|Dcaf8|ENSMUSG00000026554.10|DDB1 and CUL4 associated factor 8
mm10_v2_chr2_-_9883993_9883993	0.0654082	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr7_-_29906524_29906572	0.0634842	Brca1	ENSMUST00000159920.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27 	ENSMUST00000162592.1|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr15_+_82016369_82016419	0.0624539	Brca1	ENSMUST00000069530.6|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6
mm10_v2_chr3_+_96172327_96172338	0.0622308	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr5_+_143651222_143651246	0.0611085	Brca1	ENSMUST00000110727.1|Cyth3|ENSMUSG00000018001.12|cytohesin 3
mm10_v2_chr1_-_46854046_46854079	0.0596114	Brca1	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr9_+_88327592_88327622	0.0575096	Brca1	ENSMUST00000034992.6|Nt5e|ENSMUSG00000032420.6|5' nucleotidase, ecto
mm10_v2_chr17_-_70853482_70853546	0.0564688	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr15_+_82016420_82016515	0.0564466	Brca1	ENSMUST00000168581.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6 	ENSMUST00000170630.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6 	ENSMUST00000164779.1|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6
mm10_v2_chr17_-_6961156_6961156	0.056197	Brca1	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr4_-_43046196_43046220	0.0558693	Brca1	ENSMUST00000036462.5|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr11_-_106998483_106998491	0.0544177	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr8_+_12915879_12915975	0.0541406	Brca1	ENSMUST00000110876.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like 	ENSMUST00000110879.2|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr7_-_17027853_17027921	0.0533942	Brca1	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr5_+_135064206_135064254	0.0528919	Brca1	ENSMUST00000071263.5|Dnajc30|ENSMUSG00000061118.7|DnaJ (Hsp40) homolog, subfamily C, member 30
mm10_v2_chr12_-_12940600_12940616	0.0520111	Brca1	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr11_+_70970181_70970213	0.0519153	Brca1	ENSMUST00000018593.3|Rpain|ENSMUSG00000018449.6|RPA interacting protein
mm10_v2_chr7_+_82337218_82337218	0.0512253	Brca1	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr17_+_71204647_71204693	0.0512047	Brca1	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr17_+_35841668_35841683	0.0510422	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr3_-_95882232_95882251	0.0500364	Brca1	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr12_+_83520436_83520466	0.0495139	Brca1	ENSMUST00000021645.7|Dcaf4|ENSMUSG00000021222.8|DDB1 and CUL4 associated factor 4
mm10_v2_chr8_-_47990535_47990577	0.0489839	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr19_+_36083696_36083736	0.0480604	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr7_-_17027807_17027846	0.0470051	Brca1	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr1_+_87326997_87327006	0.0463468	Brca1	ENSMUST00000027475.8|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr7_-_102100227_102100258	0.0462472	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr7_-_80947765_80947780	0.0458469	Brca1	ENSMUST00000026818.5|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000117383.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000119980.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr12_+_4082574_4082594	0.045422	Brca1	ENSMUST00000020986.7|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr15_+_10952332_10952364	0.0449422	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr7_-_19715395_19715460	0.0445719	Brca1	ENSMUST00000032555.9|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENSMUST00000093552.5|Tomm40|ENSMUSG00000002984.10|translocase of outer mitochondrial membrane 40 homolog (yeast)
mm10_v2_chr17_+_46681038_46681184	0.0442835	Brca1	ENSMUST00000002845.6|Mea1|ENSMUSG00000002768.7|male enhanced antigen 1
mm10_v2_chr1_+_182124737_182124800	0.0429105	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr4_+_133176336_133176371	0.0412359	Brca1	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr12_-_108894116_108894174	0.041174	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr11_-_96916448_96916531	0.0410646	Brca1	ENSMUST00000103152.4|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr7_-_144939823_144939869	0.0407685	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr17_+_7945653_7945653	0.0403477	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr7_+_51878967_51879000	0.0401619	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr14_-_52305056_52305130	0.0400533	Brca1	ENSMUST00000174853.1|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3 	ENSMUST00000022767.9|Mettl3|ENSMUSG00000022160.11|methyltransferase like 3
mm10_v2_chr7_-_29906087_29906137	0.0400277	Brca1	ENSMUST00000053521.8|Zfp27|ENSMUSG00000062040.8|zinc finger protein 27
mm10_v2_chr11_-_11890368_11890379	0.0397724	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr2_-_155582656_155582668	0.0397016	Brca1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr4_+_12906838_12906881	0.0394525	Brca1	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr13_+_55714624_55714650	0.0380484	Brca1	ENSMUST00000021959.9|Txndc15|ENSMUSG00000021497.9|thioredoxin domain containing 15
mm10_v2_chr19_+_45560569_45560644	0.0371763	Brca1	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr3_-_121283096_121283103	0.0355857	Brca1	ENSMUST00000135818.1|Tmem56|ENSMUSG00000028132.9|transmembrane protein 56 	ENSMUST00000137234.1|Tmem56|ENSMUSG00000028132.9|transmembrane protein 56
mm10_v2_chr7_+_28179469_28179535	0.0354883	Brca1	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr13_-_49320219_49320311	0.0345038	Brca1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr17_+_33909481_33909576	0.0328943	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chr7_-_64872993_64873037	0.0313988	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr5_-_135064063_135064116	0.0283185	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr19_+_44562841_44562879	0.0280512	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chr12_+_87266696_87266760	0.0277237	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chr1_-_67038824_67038872	0.0267171	Brca1	ENSMUST00000119559.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000149996.1|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000027149.5|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1 	ENSMUST00000113979.3|Lancl1|ENSMUSG00000026000.10|LanC (bacterial lantibiotic synthetase component C)-like 1
mm10_v2_chr17_-_15498263_15498276	0.0266809	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr8_-_86580664_86580686	0.0264231	Brca1	ENSMUST00000131423.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12 	ENSMUST00000152438.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12
mm10_v2_chr5_+_19907502_19907551	0.0262156	Brca1	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr7_-_113369326_113369395	0.0261163	Brca1	ENSMUST00000047091.7|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10 	ENSMUST00000119278.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr5_+_19907774_19907861	0.0253784	Brca1	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr5_-_34187670_34187749	0.0247936	Brca1	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr7_+_25317067_25317164	0.0245298	Brca1	ENSMUST00000128119.1|Megf8|ENSMUSG00000045039.9|multiple EGF-like-domains 8
mm10_v2_chr15_-_82016134_82016170	0.0242663	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr2_-_155945282_155945367	0.0209247	Brca1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr17_-_47611449_47611544	0.0208257	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr19_+_10525244_10525305	0.019176	Brca1	ENSMUST00000038379.3|Cpsf7|ENSMUSG00000034820.3|cleavage and polyadenylation specific factor 7
mm10_v2_chr7_+_5080214_5080298	0.0188362	Brca1	ENSMUST00000098845.3|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000146317.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000153169.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000045277.6|Epn1|ENSMUSG00000035203.9|epsin 1
mm10_v2_chr10_-_77902467_77902536	0.0187133	Brca1	ENSMUST00000057608.4|Lrrc3|ENSMUSG00000051652.4|leucine rich repeat containing 3
mm10_v2_chr12_-_99393010_99393090	0.0181363	Brca1	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr1_-_170867761_170867784	0.0170553	Brca1	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr2_-_58052832_58052870	0.0165342	Brca1	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr11_+_44617310_44617336	0.0161039	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr14_-_61556746_61556781	0.0153839	Brca1	ENSMUST00000100496.4|Spryd7|ENSMUSG00000021930.8|SPRY domain containing 7
mm10_v2_chr9_+_82829806_82829834	0.0120789	Brca1	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr11_-_96916366_96916406	0.0113978	Brca1	ENSMUST00000144731.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3 	ENSMUST00000127048.1|Cdk5rap3|ENSMUSG00000018669.8|CDK5 regulatory subunit associated protein 3
mm10_v2_chr19_+_46152505_46152514	0.0110091	Brca1	ENSMUST00000026254.7|Gbf1|ENSMUSG00000025224.8|golgi-specific brefeldin A-resistance factor 1
mm10_v2_chr7_-_80947499_80947579	0.0102912	Brca1	ENSMUST00000120285.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr17_+_35841491_35841515	0.00818159	Brca1	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr1_-_132707304_132707326	0.00788016	Brca1	ENSMUST00000043189.7|Nfasc|ENSMUSG00000026442.8|neurofascin
mm10_v2_chr12_+_108792946_108792988	0.00776723	Brca1	ENSMUST00000021692.7|Yy1|ENSMUSG00000021264.11|YY1 transcription factor
mm10_v2_chr9_+_112234257_112234381	0.00630119	Brca1	ENSMUST00000149308.3|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene 	ENSMUST00000144424.2|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene 	ENSMUST00000139552.2|2900079G21Rik|ENSMUSG00000087038.3|RIKEN cDNA 2900079G21 gene
mm10_v2_chr2_-_91183017_91183060	0.0033552	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr11_+_97415527_97415538	0.00199827	Brca1	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr10_-_42583628_42583639	0.000963513	Brca1	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr9_+_59589288_59589353	0.000107955	Brca1	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
