mm10_v2_chrX_-_103483205_103483225	5.19737	Foxq1	ENSMUST00000127786.2|Xist|ENSMUSG00000086503.2|inactive X specific transcripts
mm10_v2_chr2_-_77519565_77519647	4.77116	Foxq1	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chr10_-_53638269_53638269	2.90758	Foxq1	ENSMUST00000164393.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr12_+_77238093_77238122	2.49545	Foxq1	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr14_-_103844173_103844198	2.00489	Foxq1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr16_+_43363855_43363888	1.79408	Foxq1	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr18_+_69344503_69344530	1.77425	Foxq1	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr7_+_110772604_110772754	1.72998	Foxq1	ENSMUST00000005829.6|Ampd3|ENSMUSG00000005686.10|adenosine monophosphate deaminase 3
mm10_v2_chr18_+_37442517_37442517	1.67306	Foxq1	ENSMUST00000056915.1|Pcdhb13|ENSMUSG00000047307.1|protocadherin beta 13
mm10_v2_chr1_+_51289106_51289142	1.5642	Foxq1	ENSMUST00000051572.6|Sdpr|ENSMUSG00000045954.6|serum deprivation response
mm10_v2_chr8_+_58912257_58912257	1.53447	Foxq1	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr16_+_43364145_43364204	1.5011	Foxq1	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_-_122002340_122002368	1.32424	Foxq1	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr9_+_15239045_15239155	1.28856	Foxq1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr18_+_57468478_57468541	1.16255	Foxq1	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr3_+_53488677_53488727	1.13376	Foxq1	ENSMUST00000029307.3|Stoml3|ENSMUSG00000027744.3|stomatin (Epb7.2)-like 3
mm10_v2_chr11_+_16257706_16257808	1.12792	Foxq1	ENSMUST00000109645.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A 	ENSMUST00000109647.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A
mm10_v2_chr3_+_122419772_122419787	1.07017	Foxq1	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr13_-_21453714_21453761	1.04881	Foxq1	ENSMUST00000032820.7|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26 	ENSMUST00000110485.1|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26
mm10_v2_chr18_+_51117754_51117898	1.02621	Foxq1	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr18_+_37518341_37518359	0.980177	Foxq1	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chr8_-_53638945_53639065	0.972223	Foxq1	ENSMUST00000047768.4|Neil3|ENSMUSG00000039396.4|nei like 3 (E. coli)
mm10_v2_chr15_-_89196457_89196478	0.953545	Foxq1	ENSMUST00000078953.7|Dennd6b|ENSMUSG00000015377.9|DENN/MADD domain containing 6B
mm10_v2_chr5_+_122643878_122644009	0.929226	Foxq1	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr10_+_60106452_60106468	0.912233	Foxq1	ENSMUST00000165024.2|Spock2|ENSMUSG00000058297.10|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm10_v2_chr2_+_164486455_164486655	0.909287	Foxq1	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr19_-_43674844_43674909	0.870378	Foxq1	ENSMUST00000046038.7|Slc25a28|ENSMUSG00000040414.7|solute carrier family 25, member 28
mm10_v2_chr4_-_129121889_129122063	0.852593	Foxq1	ENSMUST00000139450.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000125931.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000116444.2|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr6_+_38918969_38918995	0.821714	Foxq1	ENSMUST00000003017.6|Tbxas1|ENSMUSG00000029925.7|thromboxane A synthase 1, platelet
mm10_v2_chr3_+_7366598_7366641	0.818756	Foxq1	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr19_-_36919606_36919622	0.766154	Foxq1	ENSMUST00000057337.7|Fgfbp3|ENSMUSG00000047632.10|fibroblast growth factor binding protein 3
mm10_v2_chr18_+_37477768_37477835	0.755667	Foxq1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr5_-_123140135_123140289	0.693818	Foxq1	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr2_+_60209887_60210073	0.644387	Foxq1	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr3_+_136670076_136670186	0.62894	Foxq1	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr19_-_28963863_28963908	0.620047	Foxq1	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr13_+_98354234_98354250	0.615142	Foxq1	ENSMUST00000105098.3|Foxd1|ENSMUSG00000078302.3|forkhead box D1
mm10_v2_chr15_+_85510812_85510812	0.601078	Foxq1	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr18_+_37496997_37496997	0.575076	Foxq1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr18_+_37489465_37489465	0.562307	Foxq1	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr2_+_164486856_164486898	0.560139	Foxq1	ENSMUST00000109349.2|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr15_-_102189032_102189050	0.553163	Foxq1	ENSMUST00000023805.1|Csad|ENSMUSG00000023044.1|cysteine sulfinic acid decarboxylase
mm10_v2_chrX_-_141725181_141725263	0.546762	Foxq1	ENSMUST00000067841.7|Irs4|ENSMUSG00000054667.7|insulin receptor substrate 4
mm10_v2_chr18_-_89769479_89769558	0.527462	Foxq1	ENSMUST00000097495.3|Dok6|ENSMUSG00000073514.3|docking protein 6
mm10_v2_chr3_+_135825648_135825664	0.523262	Foxq1	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr11_-_100822525_100822576	0.522181	Foxq1	ENSMUST00000107358.2|Stat5b|ENSMUSG00000020919.5|signal transducer and activator of transcription 5B
mm10_v2_chr4_+_109343029_109343081	0.506094	Foxq1	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr7_+_141476374_141476400	0.48094	Foxq1	ENSMUST00000117634.1|Tspan4|ENSMUSG00000025511.8|tetraspanin 4
mm10_v2_chr3_+_19957037_19957073	0.444453	Foxq1	ENSMUST00000091309.5|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000108329.1|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000003714.6|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr6_+_36388055_36388084	0.439493	Foxq1	ENSMUST00000172278.1|Chrm2|ENSMUSG00000045613.3|cholinergic receptor, muscarinic 2, cardiac
mm10_v2_chr6_+_42264983_42265032	0.438056	Foxq1	ENSMUST00000031895.6|Casp2|ENSMUSG00000029863.7|caspase 2
mm10_v2_chr12_-_104865076_104865138	0.430818	Foxq1	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chr18_+_37447641_37447674	0.423562	Foxq1	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr3_-_57301919_57301956	0.409239	Foxq1	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr15_-_58214882_58214926	0.401583	Foxq1	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr2_-_37703275_37703290	0.400188	Foxq1	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr11_+_97029925_97029997	0.386525	Foxq1	ENSMUST00000021249.4|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr6_-_39725448_39725478	0.380566	Foxq1	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr9_+_50494516_50494533	0.362819	Foxq1	ENSMUST00000114474.1|1600029D21Rik|ENSMUSG00000032068.8|RIKEN cDNA 1600029D21 gene
mm10_v2_chr15_-_55548164_55548164	0.359415	Foxq1	ENSMUST00000165356.1|Mrpl13|ENSMUSG00000022370.7|mitochondrial ribosomal protein L13
mm10_v2_chr3_-_36053512_36053547	0.340671	Foxq1	ENSMUST00000166644.2|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B 	ENSMUST00000062056.8|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B
mm10_v2_chr2_-_37647199_37647285	0.321891	Foxq1	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr17_+_35076902_35077073	0.31904	Foxq1	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr12_-_101958148_101958246	0.308594	Foxq1	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr2_+_76406529_76406580	0.308307	Foxq1	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr1_-_6215292_6215292	0.306775	Foxq1	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr11_-_54860564_54860608	0.290339	Foxq1	ENSMUST00000144164.1|Lyrm7|ENSMUSG00000020268.7|LYR motif containing 7
mm10_v2_chr14_+_124005355_124005355	0.289502	Foxq1	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr18_-_3281036_3281132	0.27511	Foxq1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr14_+_58072686_58072686	0.250017	Foxq1	ENSMUST00000022545.7|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr10_+_88091070_88091076	0.24949	Foxq1	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chrX_-_157568983_157568991	0.248613	Foxq1	ENSMUST00000065806.4|Yy2|ENSMUSG00000091736.2|Yy2 transcription factor
mm10_v2_chr11_+_97030130_97030173	0.245868	Foxq1	ENSMUST00000153482.1|Scrn2|ENSMUSG00000020877.5|secernin 2
mm10_v2_chr10_+_80755196_80755239	0.245531	Foxq1	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr3_+_129532386_129532440	0.240669	Foxq1	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr2_+_120977017_120977107	0.234741	Foxq1	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr5_-_146220901_146220987	0.232765	Foxq1	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr3_-_146781351_146781431	0.23063	Foxq1	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr10_+_42860776_42860810	0.22459	Foxq1	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr11_+_44617310_44617336	0.213792	Foxq1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr4_+_32243733_32243733	0.205914	Foxq1	ENSMUST00000165661.1|D130062J21Rik|ENSMUSG00000090278.1|RIKEN cDNA D130062J21 gene
mm10_v2_chr10_+_90576252_90576517	0.192977	Foxq1	ENSMUST00000182427.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182053.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182113.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr7_+_120917744_120917815	0.187607	Foxq1	ENSMUST00000033173.7|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E 	ENSMUST00000106483.2|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E
mm10_v2_chr9_-_112187766_112187862	0.180115	Foxq1	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chrX_-_70365052_70365112	0.17431	Foxq1	ENSMUST00000101509.2|Ids|ENSMUSG00000035847.9|iduronate 2-sulfatase
mm10_v2_chr4_+_108479081_108479224	0.167858	Foxq1	ENSMUST00000155068.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr1_+_156838915_156838978	0.167746	Foxq1	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr18_+_11657349_11657486	0.159706	Foxq1	ENSMUST00000047322.6|Rbbp8|ENSMUSG00000041238.9|retinoblastoma binding protein 8
mm10_v2_chr5_-_31108218_31108237	0.158008	Foxq1	ENSMUST00000182776.1|Slc30a3|ENSMUSG00000029151.8|solute carrier family 30 (zinc transporter), member 3 	ENSMUST00000182444.1|Slc30a3|ENSMUSG00000029151.8|solute carrier family 30 (zinc transporter), member 3
mm10_v2_chr19_-_56822161_56822220	0.15029	Foxq1	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr8_+_46986913_46986962	0.14846	Foxq1	ENSMUST00000039840.7|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6 	ENSMUST00000119686.1|Enpp6|ENSMUSG00000038173.8|ectonucleotide pyrophosphatase/phosphodiesterase 6
mm10_v2_chr14_-_30353468_30353535	0.128542	Foxq1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr2_+_91255954_91256105	0.12698	Foxq1	ENSMUST00000134699.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr18_-_88927447_88927481	0.123912	Foxq1	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr3_+_79884496_79884571	0.117096	Foxq1	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr1_+_89454769_89454885	0.112036	Foxq1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr8_-_84773381_84773427	0.10465	Foxq1	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr15_-_97247287_97247315	0.103238	Foxq1	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr15_-_50882806_50882822	0.100308	Foxq1	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr12_-_73113407_73113456	0.0989574	Foxq1	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr9_+_70678950_70679010	0.096099	Foxq1	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr9_+_108560422_108560534	0.0924359	Foxq1	ENSMUST00000081111.8|Impdh2|ENSMUSG00000062867.8|inosine 5'-phosphate dehydrogenase 2
mm10_v2_chr13_-_67637776_67637801	0.0818207	Foxq1	ENSMUST00000012314.8|A530054K11Rik|ENSMUSG00000021510.10|RIKEN cDNA A530054K11 gene
mm10_v2_chrX_+_38600626_38600691	0.0809624	Foxq1	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr17_+_20570362_20570362	0.0783107	Foxq1	ENSMUST00000095633.3|Gm5145|ENSMUSG00000071273.3|predicted pseudogene 5145
mm10_v2_chr16_+_13358375_13358439	0.068385	Foxq1	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr5_+_135725713_135725740	0.0648532	Foxq1	ENSMUST00000127096.1|Por|ENSMUSG00000005514.8|P450 (cytochrome) oxidoreductase
mm10_v2_chr3_+_79884576_79884597	0.0591571	Foxq1	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr7_+_120677579_120677630	0.0552417	Foxq1	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr2_-_181581996_181582008	0.0451933	Foxq1	ENSMUST00000057816.8|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chr4_-_45532470_45532470	0.044787	Foxq1	ENSMUST00000147448.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr11_+_82911253_82911294	0.0446989	Foxq1	ENSMUST00000164945.1|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans) 	ENSMUST00000018989.7|Unc45b|ENSMUSG00000018845.8|unc-45 homolog B (C. elegans)
mm10_v2_chr14_-_36935560_36935578	0.0405574	Foxq1	ENSMUST00000183038.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr19_-_6080311_6080336	0.0363352	Foxq1	ENSMUST00000159832.1|Vps51|ENSMUSG00000024797.6|vacuolar protein sorting 51 homolog (S. cerevisiae)
mm10_v2_chr2_-_176917518_176917518	0.0289361	Foxq1	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr3_+_96645579_96645608	0.0275318	Foxq1	ENSMUST00000119365.1|Itga10|ENSMUSG00000090210.1|integrin, alpha 10 	ENSMUST00000029744.5|Itga10|ENSMUSG00000090210.1|integrin, alpha 10
mm10_v2_chr12_-_110840905_110840950	0.0254298	Foxq1	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr1_-_44101661_44101673	0.0223716	Foxq1	ENSMUST00000152239.1|Tex30|ENSMUSG00000026049.5|testis expressed 30
mm10_v2_chr16_-_85550417_85550432	0.0148931	Foxq1	ENSMUST00000175700.1|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1 	ENSMUST00000114174.2|Cyyr1|ENSMUSG00000041134.9|cysteine and tyrosine-rich protein 1
mm10_v2_chr8_+_86745679_86745699	0.014611	Foxq1	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr4_-_87806296_87806325	0.0141332	Foxq1	ENSMUST00000126353.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENSMUST00000149357.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr8_+_93810832_93810843	0.0112677	Foxq1	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr17_+_35077080_35077155	0.0107624	Foxq1	ENSMUST00000172959.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr10_-_80900749_80900969	0.0100084	Foxq1	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr12_+_52516077_52516077	0.0042433	Foxq1	ENSMUST00000110725.1|Arhgap5|ENSMUSG00000035133.8|Rho GTPase activating protein 5
mm10_v2_chr5_-_138170992_138171033	0.000198684	Foxq1	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
