mm10_v2_chrX_-_143933089_143933142	1.17321	Hoxa7_Hoxc8	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr15_-_67113909_67113992	1.07285	Hoxa7_Hoxc8	ENSMUST00000092640.5|St3gal1|ENSMUSG00000013846.9|ST3 beta-galactoside alpha-2,3-sialyltransferase 1
mm10_v2_chr12_-_55014329_55014353	0.595573	Hoxa7_Hoxc8	ENSMUST00000172875.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr9_-_90255927_90255943	0.541683	Hoxa7_Hoxc8	ENSMUST00000144646.1|Tbc1d2b|ENSMUSG00000037410.7|TBC1 domain family, member 2B
mm10_v2_chr14_-_100149764_100149764	0.532162	Hoxa7_Hoxc8	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr18_+_86711059_86711110	0.515932	Hoxa7_Hoxc8	ENSMUST00000068423.3|Cbln2|ENSMUSG00000024647.8|cerebellin 2 precursor protein
mm10_v2_chr2_+_69897255_69897303	0.509774	Hoxa7_Hoxc8	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr4_+_102589687_102589843	0.477603	Hoxa7_Hoxc8	ENSMUST00000097949.4|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific 	ENSMUST00000106901.1|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chrX_-_143933204_143933311	0.470454	Hoxa7_Hoxc8	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr3_+_55782500_55782521	0.460397	Hoxa7_Hoxc8	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr1_+_72284367_72284419	0.456311	Hoxa7_Hoxc8	ENSMUST00000027380.5|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169 	ENSMUST00000141783.1|Tmem169|ENSMUSG00000026188.5|transmembrane protein 169
mm10_v2_chr15_-_37458523_37458581	0.446144	Hoxa7_Hoxc8	ENSMUST00000116445.2|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr10_+_116018213_116018421	0.422492	Hoxa7_Hoxc8	ENSMUST00000063470.4|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr8_-_109251698_109251728	0.401386	Hoxa7_Hoxc8	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr1_-_134955847_134955852	0.397463	Hoxa7_Hoxc8	ENSMUST00000168381.1|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm10_v2_chr5_+_29195983_29196032	0.372478	Hoxa7_Hoxc8	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr13_-_102906046_102906111	0.329698	Hoxa7_Hoxc8	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr3_+_121291725_121291817	0.313679	Hoxa7_Hoxc8	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr16_-_50330987_50331017	0.307845	Hoxa7_Hoxc8	ENSMUST00000114488.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr5_+_66968559_66968577	0.304753	Hoxa7_Hoxc8	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr4_-_115133977_115134084	0.301272	Hoxa7_Hoxc8	ENSMUST00000051400.7|Cyp4x1|ENSMUSG00000047155.7|cytochrome P450, family 4, subfamily x, polypeptide 1
mm10_v2_chr18_+_23753708_23753725	0.301108	Hoxa7_Hoxc8	ENSMUST00000115830.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr2_-_121235689_121235846	0.29887	Hoxa7_Hoxc8	ENSMUST00000142400.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr1_-_126738167_126738230	0.295504	Hoxa7_Hoxc8	ENSMUST00000160693.1|Nckap5|ENSMUSG00000049690.9|NCK-associated protein 5
mm10_v2_chr13_-_102905740_102905814	0.293839	Hoxa7_Hoxc8	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr14_-_108914237_108914257	0.257501	Hoxa7_Hoxc8	ENSMUST00000100322.2|Slitrk1|ENSMUSG00000075478.2|SLIT and NTRK-like family, member 1
mm10_v2_chr14_+_80000292_80000309	0.250495	Hoxa7_Hoxc8	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr1_-_172027269_172027313	0.240713	Hoxa7_Hoxc8	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr4_-_14621669_14621786	0.238473	Hoxa7_Hoxc8	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr10_+_37139558_37139558	0.228864	Hoxa7_Hoxc8	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr4_-_82850721_82850814	0.219523	Hoxa7_Hoxc8	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr1_-_134955908_134955955	0.21836	Hoxa7_Hoxc8	ENSMUST00000045665.6|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000086444.4|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B 	ENSMUST00000112163.1|Ppp1r12b|ENSMUSG00000073557.5|protein phosphatase 1, regulatory (inhibitor) subunit 12B
mm10_v2_chr4_-_14621494_14621506	0.216118	Hoxa7_Hoxc8	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr6_-_30693676_30693749	0.204113	Hoxa7_Hoxc8	ENSMUST00000169422.1|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000115131.1|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000115130.2|Cep41|ENSMUSG00000029790.10|centrosomal protein 41 	ENSMUST00000031810.8|Cep41|ENSMUSG00000029790.10|centrosomal protein 41
mm10_v2_chr3_+_55461758_55461961	0.202959	Hoxa7_Hoxc8	ENSMUST00000070418.4|Dclk1|ENSMUSG00000027797.9|doublecortin-like kinase 1
mm10_v2_chr14_-_36919314_36919352	0.201443	Hoxa7_Hoxc8	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr15_-_100425050_100425075	0.201103	Hoxa7_Hoxc8	ENSMUST00000123461.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr7_+_38183217_38183278	0.194211	Hoxa7_Hoxc8	ENSMUST00000165308.1|1600014C10Rik|ENSMUSG00000054676.9|RIKEN cDNA 1600014C10 gene
mm10_v2_chr2_+_23069210_23069327	0.183156	Hoxa7_Hoxc8	ENSMUST00000155602.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chrX_+_166170449_166170512	0.167684	Hoxa7_Hoxc8	ENSMUST00000130880.2|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000056410.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000096252.3|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8 	ENSMUST00000087169.4|Gemin8|ENSMUSG00000040621.8|gem (nuclear organelle) associated protein 8
mm10_v2_chr10_-_117148474_117148510	0.166659	Hoxa7_Hoxc8	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr4_+_108719649_108719649	0.166239	Hoxa7_Hoxc8	ENSMUST00000178992.1|3110021N24Rik|ENSMUSG00000094958.1|RIKEN cDNA 3110021N24 gene
mm10_v2_chr4_-_14621805_14621819	0.154105	Hoxa7_Hoxc8	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr18_+_32067729_32067811	0.150824	Hoxa7_Hoxc8	ENSMUST00000025243.3|Iws1|ENSMUSG00000024384.3|IWS1 homolog (S. cerevisiae)
mm10_v2_chr2_+_69897220_69897247	0.149917	Hoxa7_Hoxc8	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr12_-_40248073_40248086	0.142902	Hoxa7_Hoxc8	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr13_+_42681513_42681564	0.141556	Hoxa7_Hoxc8	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr9_+_113812547_113812621	0.139417	Hoxa7_Hoxc8	ENSMUST00000166734.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000111838.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2 	ENSMUST00000163895.2|Clasp2|ENSMUSG00000033392.9|CLIP associating protein 2
mm10_v2_chr18_-_56975333_56975376	0.137353	Hoxa7_Hoxc8	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr4_+_100478806_100478872	0.130162	Hoxa7_Hoxc8	ENSMUST00000133493.2|Ube2u|ENSMUSG00000069733.5|ubiquitin-conjugating enzyme E2U (putative) 	ENSMUST00000092730.3|Ube2u|ENSMUSG00000069733.5|ubiquitin-conjugating enzyme E2U (putative) 	ENSMUST00000106979.3|Ube2u|ENSMUSG00000069733.5|ubiquitin-conjugating enzyme E2U (putative)
mm10_v2_chr15_-_75905349_75905388	0.128761	Hoxa7_Hoxc8	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr2_-_33718789_33718899	0.123889	Hoxa7_Hoxc8	ENSMUST00000130532.1|9430024E24Rik|ENSMUSG00000085463.1|RIKEN cDNA 9430024E24 gene
mm10_v2_chr15_+_98571004_98571026	0.118557	Hoxa7_Hoxc8	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr2_-_45117349_45117395	0.110992	Hoxa7_Hoxc8	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr7_+_35802593_35802593	0.108045	Hoxa7_Hoxc8	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chrX_+_159303266_159303281	0.107141	Hoxa7_Hoxc8	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr12_+_71170589_71170589	0.10503	Hoxa7_Hoxc8	ENSMUST00000129376.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr13_-_53473074_53473074	0.102135	Hoxa7_Hoxc8	ENSMUST00000021922.8|Msx2|ENSMUSG00000021469.8|msh homeobox 2
mm10_v2_chr5_+_66968416_66968447	0.101909	Hoxa7_Hoxc8	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr15_+_81744848_81744848	0.0931283	Hoxa7_Hoxc8	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr17_-_29007925_29007962	0.0871045	Hoxa7_Hoxc8	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr13_+_43785107_43785160	0.0825606	Hoxa7_Hoxc8	ENSMUST00000015540.2|Cd83|ENSMUSG00000015396.3|CD83 antigen
mm10_v2_chr7_-_38019505_38019552	0.0733619	Hoxa7_Hoxc8	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr9_-_55919605_55919605	0.0717623	Hoxa7_Hoxc8	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr17_-_45659312_45659335	0.0687994	Hoxa7_Hoxc8	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr2_+_110597298_110597316	0.0663157	Hoxa7_Hoxc8	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr6_+_134640940_134641097	0.063862	Hoxa7_Hoxc8	ENSMUST00000062755.8|Loh12cr1|ENSMUSG00000042992.9|loss of heterozygosity, 12, chromosomal region 1 homolog (human)
mm10_v2_chr9_-_79977782_79977809	0.0631247	Hoxa7_Hoxc8	ENSMUST00000093811.4|Filip1|ENSMUSG00000034898.9|filamin A interacting protein 1
mm10_v2_chr16_-_45724600_45724619	0.0485685	Hoxa7_Hoxc8	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr6_+_37870786_37870882	0.0461529	Hoxa7_Hoxc8	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr18_-_75697639_75697697	0.0452604	Hoxa7_Hoxc8	ENSMUST00000165559.1|Ctif|ENSMUSG00000052928.8|CBP80/20-dependent translation initiation factor
mm10_v2_chr11_-_82890541_82890626	0.0397045	Hoxa7_Hoxc8	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chrX_+_16619698_16619758	0.0333753	Hoxa7_Hoxc8	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr3_+_96645579_96645608	0.0332584	Hoxa7_Hoxc8	ENSMUST00000119365.1|Itga10|ENSMUSG00000090210.1|integrin, alpha 10 	ENSMUST00000029744.5|Itga10|ENSMUSG00000090210.1|integrin, alpha 10
mm10_v2_chr19_-_53944621_53944632	0.0308227	Hoxa7_Hoxc8	ENSMUST00000135402.2|Bbip1|ENSMUSG00000084957.2|BBSome interacting protein 1
mm10_v2_chr6_+_63255971_63256036	0.0263682	Hoxa7_Hoxc8	ENSMUST00000159561.1|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2 	ENSMUST00000095852.3|Grid2|ENSMUSG00000071424.3|glutamate receptor, ionotropic, delta 2
mm10_v2_chr1_+_24177610_24177711	0.0258192	Hoxa7_Hoxc8	ENSMUST00000054588.8|Col9a1|ENSMUSG00000026147.10|collagen, type IX, alpha 1
mm10_v2_chr13_-_81710937_81711013	0.0189534	Hoxa7_Hoxc8	ENSMUST00000161920.1|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G 	ENSMUST00000048993.5|Polr3g|ENSMUSG00000035834.5|polymerase (RNA) III (DNA directed) polypeptide G
mm10_v2_chr13_+_24801657_24801657	0.0181712	Hoxa7_Hoxc8	ENSMUST00000019276.4|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr3_-_86548268_86548290	0.0142867	Hoxa7_Hoxc8	ENSMUST00000077524.3|Mab21l2|ENSMUSG00000057777.3|mab-21-like 2 (C. elegans)
mm10_v2_chr13_+_24802020_24802020	0.0118172	Hoxa7_Hoxc8	ENSMUST00000155575.1|BC005537|ENSMUSG00000019132.4|cDNA sequence BC005537
mm10_v2_chr7_+_126950687_126950729	0.0095364	Hoxa7_Hoxc8	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr10_-_128626464_128626520	0.00622238	Hoxa7_Hoxc8	ENSMUST00000026420.5|Rps26|ENSMUSG00000025362.5|ribosomal protein S26
mm10_v2_chr6_+_145934113_145934136	0.00527564	Hoxa7_Hoxc8	ENSMUST00000032383.7|Sspn|ENSMUSG00000030255.7|sarcospan
mm10_v2_chr7_-_83550258_83550258	0.00218664	Hoxa7_Hoxc8	ENSMUST00000177929.1|Gm10610|ENSMUSG00000094841.1|predicted gene 10610
mm10_v2_chr8_-_106573461_106573462	0.000812595	Hoxa7_Hoxc8	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
