mm10_v2_chr1_-_52490736_52490736	7.80059	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr15_-_93519499_93519526	7.61589	Nanog	ENSMUST00000109255.2|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr14_-_12345847_12345872	5.70784	Nanog	ENSMUST00000022262.4|Fezf2|ENSMUSG00000021743.5|Fez family zinc finger 2
mm10_v2_chr12_+_72441933_72441970	5.05533	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr6_+_80018877_80018945	4.80033	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr19_+_25672408_25672420	4.79495	Nanog	ENSMUST00000053068.5|Dmrt2|ENSMUSG00000048138.9|doublesex and mab-3 related transcription factor 2
mm10_v2_chr6_+_80019008_80019048	4.70486	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr12_+_72441852_72441866	4.15701	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr1_-_158814469_158814469	3.23543	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr5_-_147076482_147076586	3.09933	Nanog	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr13_-_89742244_89742334	3.02999	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr13_-_89742490_89742515	2.99068	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chrX_+_153237466_153237466	2.41144	Nanog	ENSMUST00000143880.1|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr12_-_83487708_83487729	2.10377	Nanog	ENSMUST00000177959.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3 	ENSMUST00000178756.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr11_-_109298066_109298079	1.93118	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr15_-_13173607_13173644	1.8354	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr17_+_3397189_3397207	1.83174	Nanog	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr8_-_36732897_36733054	1.82091	Nanog	ENSMUST00000098826.3|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr7_+_67647405_67647456	1.76441	Nanog	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr11_+_75532099_75532125	1.66801	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chrY_-_1245685_1245752	1.61107	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr4_+_43059028_43059080	1.60104	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr4_-_58553553_58553898	1.55232	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr12_-_69790660_69790735	1.55109	Nanog	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr8_+_84415348_84415392	1.53752	Nanog	ENSMUST00000121390.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit 	ENSMUST00000122053.1|Cacna1a|ENSMUSG00000034656.10|calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
mm10_v2_chr4_+_43058939_43058969	1.51725	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr15_-_66831625_66831668	1.48034	Nanog	ENSMUST00000164163.1|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr11_+_75531690_75531743	1.47381	Nanog	ENSMUST00000149727.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000042561.7|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000108433.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2 	ENSMUST00000143035.1|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr2_-_45112890_45113010	1.42345	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr4_+_101507855_101507871	1.41007	Nanog	ENSMUST00000038207.5|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr9_-_66514567_66514597	1.39443	Nanog	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr2_+_20737306_20737321	1.37873	Nanog	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr6_-_67037399_67037417	1.35544	Nanog	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr4_+_101507947_101508032	1.33039	Nanog	ENSMUST00000149047.1|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6 	ENSMUST00000106929.3|Dnajc6|ENSMUSG00000028528.10|DnaJ (Hsp40) homolog, subfamily C, member 6
mm10_v2_chr10_-_7212222_7212247	1.32975	Nanog	ENSMUST00000015346.5|Cnksr3|ENSMUSG00000015202.7|Cnksr family member 3
mm10_v2_chr5_+_147077050_147077050	1.32921	Nanog	ENSMUST00000050970.3|Polr1d|ENSMUSG00000029642.7|polymerase (RNA) I polypeptide D
mm10_v2_chr11_-_109298121_109298142	1.30075	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr6_-_50456085_50456174	1.25739	Nanog	ENSMUST00000146341.1|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3 	ENSMUST00000071728.4|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr1_-_186117251_186117310	1.20366	Nanog	ENSMUST00000045388.7|Lyplal1|ENSMUSG00000039246.7|lysophospholipase-like 1
mm10_v2_chr9_+_104063678_104063710	1.16647	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr13_+_23752267_23752351	1.14197	Nanog	ENSMUST00000091703.2|Hist1h3b|ENSMUSG00000069267.2|histone cluster 1, H3b
mm10_v2_chr17_+_21691860_21691860	1.11129	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr1_-_172027251_172027268	1.10603	Nanog	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr14_-_78536762_78536851	1.09773	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr10_+_69785507_69785525	1.09332	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr11_-_107337556_107337637	1.06938	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr1_+_174501796_174501843	1.05862	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr3_+_103968110_103968446	1.0491	Nanog	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr7_-_63212514_63212531	1.03939	Nanog	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chr2_+_69897255_69897303	1.03356	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr10_+_18469958_18469981	1.0222	Nanog	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr14_+_73237891_73238007	0.980081	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr11_+_95712673_95712673	0.915965	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr4_-_9669068_9669162	0.912831	Nanog	ENSMUST00000078139.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108340.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084915.4|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000108337.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000084912.5|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000038564.6|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000146441.1|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase 	ENSMUST00000098275.2|Asph|ENSMUSG00000028207.12|aspartate-beta-hydroxylase
mm10_v2_chr12_+_109549157_109549301	0.906719	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr9_-_15301555_15301607	0.902318	Nanog	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr1_+_131962941_131962969	0.901504	Nanog	ENSMUST00000177943.1|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr3_+_122044428_122044469	0.898054	Nanog	ENSMUST00000013995.8|Abca4|ENSMUSG00000028125.8|ATP-binding cassette, sub-family A (ABC1), member 4
mm10_v2_chr17_-_81649607_81649607	0.884437	Nanog	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr17_-_32800938_32800938	0.851303	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chrX_-_60893430_60893440	0.825655	Nanog	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr15_+_25773985_25774042	0.822598	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr7_+_128688480_128688500	0.809351	Nanog	ENSMUST00000118605.1|Inpp5f|ENSMUSG00000042105.12|inositol polyphosphate-5-phosphatase F
mm10_v2_chr6_-_102464667_102464667	0.804557	Nanog	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr2_-_156144138_156144192	0.777789	Nanog	ENSMUST00000109600.1|Nfs1|ENSMUSG00000027618.11|nitrogen fixation gene 1 (S. cerevisiae) 	ENSMUST00000029147.9|Nfs1|ENSMUSG00000027618.11|nitrogen fixation gene 1 (S. cerevisiae)
mm10_v2_chr7_-_141434402_141434486	0.776529	Nanog	ENSMUST00000136354.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr13_+_24943144_24943164	0.764961	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr10_-_127121125_127121160	0.761107	Nanog	ENSMUST00000164259.1|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma 	ENSMUST00000080975.4|Os9|ENSMUSG00000040462.6|amplified in osteosarcoma
mm10_v2_chr10_-_109010955_109010983	0.758294	Nanog	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr18_+_77185815_77185879	0.755703	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr19_-_56822161_56822220	0.75166	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr8_-_120589304_120589304	0.749998	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr18_-_67245818_67245842	0.747826	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chr11_-_23895208_23895280	0.74574	Nanog	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr13_-_19619820_19619830	0.741743	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr10_+_39612934_39612934	0.70459	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr14_+_56887795_56887795	0.701998	Nanog	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr6_+_71282280_71282280	0.699435	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr1_-_60566708_60566769	0.691217	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr15_-_50889043_50889054	0.668277	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr7_-_133702515_133702616	0.664782	Nanog	ENSMUST00000153698.1|Uros|ENSMUSG00000030979.6|uroporphyrinogen III synthase
mm10_v2_chr16_+_13671922_13671937	0.664358	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr9_-_15357692_15357788	0.652481	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr7_+_89404356_89404367	0.648992	Nanog	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr7_-_6011010_6011010	0.647816	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chr13_+_44729794_44729807	0.641979	Nanog	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr2_+_69897220_69897247	0.635225	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr1_+_169969409_169969454	0.632652	Nanog	ENSMUST00000180638.1|3110045C21Rik|ENSMUSG00000097503.1|RIKEN cDNA 3110045C21 gene
mm10_v2_chr4_-_116708312_116708406	0.627423	Nanog	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr16_+_19760902_19761054	0.623656	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr2_+_134786154_134786170	0.623325	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr8_+_61487715_61487751	0.607834	Nanog	ENSMUST00000034058.6|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4 	ENSMUST00000126575.1|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4
mm10_v2_chr1_+_135584773_135584773	0.60662	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr12_-_83921809_83921898	0.588466	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr18_-_35215008_35215033	0.580679	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr13_-_12258093_12258134	0.579979	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr8_-_25201349_25201459	0.579632	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr7_+_112742025_112742060	0.562763	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr11_-_101095367_101095439	0.559989	Nanog	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr5_+_135806859_135806902	0.553536	Nanog	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr19_+_6046576_6046662	0.530562	Nanog	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr7_+_59228743_59228769	0.513813	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr1_+_93512079_93512125	0.508013	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr11_-_109298090_109298118	0.503429	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr4_-_46650102_46650209	0.500749	Nanog	ENSMUST00000084621.5|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2 	ENSMUST00000107750.1|Tbc1d2|ENSMUSG00000039813.8|TBC1 domain family, member 2
mm10_v2_chr16_-_23520579_23520673	0.496901	Nanog	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr7_-_115846080_115846112	0.495738	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr9_+_92309362_92309386	0.49119	Nanog	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr17_+_35841668_35841683	0.48855	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr3_-_37312418_37312465	0.487403	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr17_+_8849974_8850001	0.481926	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr4_+_128688726_128688795	0.481027	Nanog	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr14_+_61607455_61607482	0.47864	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chrX_+_150594420_150594478	0.475892	Nanog	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr7_+_30321740_30321774	0.475072	Nanog	ENSMUST00000098585.3|E130208F15Rik|ENSMUSG00000074210.3|RIKEN cDNA E130208F15 gene
mm10_v2_chr11_+_86484647_86484716	0.470997	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr3_-_123672321_123672400	0.469764	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr8_-_89044162_89044195	0.469537	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr13_+_104178797_104178872	0.465201	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr6_-_108185552_108185587	0.449617	Nanog	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr10_+_77622363_77622378	0.448393	Nanog	ENSMUST00000172772.1|Ube2g2|ENSMUSG00000009293.11|ubiquitin-conjugating enzyme E2G 2
mm10_v2_chr14_-_26971232_26971232	0.443961	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr8_+_78509319_78509399	0.442423	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr16_-_3872378_3872411	0.435981	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr7_+_103550368_103550368	0.432016	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chrX_-_135009185_135009225	0.429856	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr2_+_115581667_115581743	0.428265	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr3_+_88965812_88965812	0.427014	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr9_+_108490676_108490692	0.422872	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr5_+_57718021_57718104	0.42008	Nanog	ENSMUST00000094783.3|Pcdh7|ENSMUSG00000029108.8|protocadherin 7 	ENSMUST00000068110.7|Pcdh7|ENSMUSG00000029108.8|protocadherin 7
mm10_v2_chr16_+_87454976_87454987	0.418814	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr16_+_13671980_13672032	0.418237	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr5_-_100373484_100373527	0.4044	Nanog	ENSMUST00000182433.1|Sec31a|ENSMUSG00000035325.10|Sec31 homolog A (S. cerevisiae)
mm10_v2_chr7_-_141434532_141434605	0.401999	Nanog	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr7_+_82337218_82337218	0.389239	Nanog	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr13_-_104178399_104178480	0.385404	Nanog	ENSMUST00000179891.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000022224.9|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000141557.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000091264.1|Trappc13|ENSMUSG00000078936.1|trafficking protein particle complex 13 	ENSMUST00000144060.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13
mm10_v2_chr3_-_144760841_144760868	0.37814	Nanog	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr18_+_35553401_35553421	0.375078	Nanog	ENSMUST00000181664.1|Snhg4|ENSMUSG00000097769.1|small nucleolar RNA host gene 4 (non-protein coding)
mm10_v2_chr4_-_149454971_149454986	0.37363	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr11_-_98053415_98053467	0.370879	Nanog	ENSMUST00000017544.2|Stac2|ENSMUSG00000017400.4|SH3 and cysteine rich domain 2
mm10_v2_chr10_+_33905015_33905111	0.368258	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr17_-_25727364_25727426	0.365182	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr9_-_103365769_103365785	0.363145	Nanog	ENSMUST00000035484.4|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3 	ENSMUST00000072249.6|Cdv3|ENSMUSG00000032803.8|carnitine deficiency-associated gene expressed in ventricle 3
mm10_v2_chr12_-_4038905_4038957	0.361589	Nanog	ENSMUST00000111178.1|Efr3b|ENSMUSG00000020658.9|EFR3 homolog B (S. cerevisiae)
mm10_v2_chr13_+_96082158_96082158	0.36069	Nanog	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr3_+_65666223_65666259	0.360044	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr16_+_13671858_13671918	0.357699	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr2_+_144527718_144527773	0.354031	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr5_+_25246775_25246802	0.353542	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr19_-_43524462_43524605	0.343848	Nanog	ENSMUST00000026196.7|Got1|ENSMUSG00000025190.7|glutamate oxaloacetate transaminase 1, soluble
mm10_v2_chr7_+_64287665_64287676	0.339088	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr2_+_18064564_18064644	0.336215	Nanog	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr2_+_29060239_29060287	0.33618	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr2_+_62664279_62664300	0.332831	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr16_-_45724600_45724619	0.328907	Nanog	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr13_-_85127514_85127514	0.328092	Nanog	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr2_-_37703845_37703885	0.327231	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr2_+_11339461_11339501	0.326411	Nanog	ENSMUST00000131188.1|Gm13293|ENSMUSG00000086006.1|predicted gene 13293
mm10_v2_chr13_-_9765137_9765321	0.315878	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr5_-_134456702_134456785	0.31182	Nanog	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr3_-_69127098_69127113	0.311666	Nanog	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr16_+_3872368_3872385	0.310191	Nanog	ENSMUST00000151988.1|Naa60|ENSMUSG00000005982.7|N(alpha)-acetyltransferase 60, NatF catalytic subunit
mm10_v2_chr12_-_83921899_83921934	0.308779	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr16_+_16983454_16983567	0.308553	Nanog	ENSMUST00000115731.1|Mapk1|ENSMUSG00000063358.9|mitogen-activated protein kinase 1
mm10_v2_chrX_+_7822289_7822289	0.308346	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr19_-_53464721_53464833	0.308168	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr14_-_26534870_26534931	0.306401	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr1_+_89454769_89454885	0.297462	Nanog	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr2_-_86347764_86347764	0.29644	Nanog	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr9_-_52168111_52168111	0.296216	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr7_-_141655319_141655395	0.29583	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr19_-_45783512_45783558	0.295143	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr10_+_58394361_58394380	0.293147	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr7_+_100706623_100706668	0.292808	Nanog	ENSMUST00000107042.1|Fam168a|ENSMUSG00000029461.9|family with sequence similarity 168, member A
mm10_v2_chr9_-_7184440_7184518	0.284394	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr2_+_32363680_32363810	0.284071	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr6_+_83185946_83186151	0.283251	Nanog	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr12_-_101958148_101958246	0.280348	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr2_+_112379204_112379253	0.273694	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr19_+_4003334_4003366	0.27315	Nanog	ENSMUST00000025806.3|Doc2g|ENSMUSG00000024871.4|double C2, gamma
mm10_v2_chr7_-_144939823_144939869	0.26696	Nanog	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr13_-_21716143_21716189	0.261926	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chr15_-_103251465_103251705	0.260433	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr8_+_84686300_84686348	0.253632	Nanog	ENSMUST00000177531.1|Trmt1|ENSMUSG00000001909.9|tRNA methyltransferase 1
mm10_v2_chr6_-_39725448_39725478	0.248106	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr7_-_90475971_90476003	0.239824	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr3_+_10088173_10088173	0.239814	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr5_+_121397936_121398004	0.237636	Nanog	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr5_-_16731074_16731074	0.236088	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chr15_+_78428564_78428636	0.235621	Nanog	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr7_-_100467149_100467190	0.235132	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr17_+_35379608_35379637	0.233801	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr9_+_44379536_44379624	0.230127	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chrX_-_56822308_56822346	0.229798	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr8_-_34965631_34965714	0.223179	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr7_-_98656530_98656600	0.222051	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr7_+_3629985_3630037	0.220252	Nanog	ENSMUST00000008517.6|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast) 	ENSMUST00000179769.1|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast)
mm10_v2_chr7_+_49246131_49246202	0.219692	Nanog	ENSMUST00000064395.6|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr15_+_98092569_98092603	0.21055	Nanog	ENSMUST00000163507.1|Pfkm|ENSMUSG00000033065.7|phosphofructokinase, muscle
mm10_v2_chr19_+_60889749_60889749	0.206495	Nanog	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr9_+_21955747_21955769	0.202332	Nanog	ENSMUST00000053583.5|Swsap1|ENSMUSG00000051238.5|SWIM type zinc finger 7 associated protein 1
mm10_v2_chr9_-_44305595_44305688	0.201321	Nanog	ENSMUST00000034629.4|Hinfp|ENSMUSG00000032119.4|histone H4 transcription factor
mm10_v2_chr10_-_42583628_42583639	0.199279	Nanog	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr5_-_124187150_124187225	0.197521	Nanog	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr3_+_37312514_37312575	0.190328	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr5_-_99978914_99978966	0.188146	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr4_+_86575668_86575689	0.187861	Nanog	ENSMUST00000091064.6|Rraga|ENSMUSG00000070934.5|Ras-related GTP binding A
mm10_v2_chr17_-_59013264_59013372	0.186848	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr3_+_54481429_54481429	0.183821	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr3_+_79884576_79884597	0.183441	Nanog	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr3_+_89136133_89136183	0.182993	Nanog	ENSMUST00000047111.6|Pklr|ENSMUSG00000041237.6|pyruvate kinase liver and red blood cell
mm10_v2_chr9_+_109096659_109096710	0.180402	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr15_+_34453285_34453312	0.172744	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr11_-_70969953_70969978	0.170536	Nanog	ENSMUST00000108530.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000035283.4|Nup88|ENSMUSG00000040667.5|nucleoporin 88 	ENSMUST00000108531.1|Nup88|ENSMUSG00000040667.5|nucleoporin 88
mm10_v2_chr11_-_102406783_102406955	0.16711	Nanog	ENSMUST00000155104.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000130436.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr16_+_32877775_32877831	0.166119	Nanog	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr8_-_35495487_35495545	0.161026	Nanog	ENSMUST00000033927.6|Eri1|ENSMUSG00000031527.6|exoribonuclease 1
mm10_v2_chr14_-_96519067_96519102	0.159995	Nanog	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr10_+_53337686_53337724	0.155559	Nanog	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr17_-_15826521_15826590	0.154105	Nanog	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr2_-_167062981_167063048	0.151722	Nanog	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr6_+_125145235_125145251	0.144762	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr6_+_29348069_29348123	0.143699	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr17_+_78491549_78491565	0.143029	Nanog	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr1_+_153899937_153899953	0.141481	Nanog	ENSMUST00000086199.5|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr15_+_80255184_80255263	0.137843	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr16_+_11405648_11405713	0.136261	Nanog	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chrX_+_36795642_36795653	0.134642	Nanog	ENSMUST00000016463.3|Slc25a5|ENSMUSG00000016319.3|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm10_v2_chr12_+_24651346_24651409	0.132892	Nanog	ENSMUST00000020982.5|Klf11|ENSMUSG00000020653.5|Kruppel-like factor 11
mm10_v2_chr11_+_88294043_88294073	0.132209	Nanog	ENSMUST00000037268.4|1700106J16Rik|ENSMUSG00000034031.4|RIKEN cDNA 1700106J16 gene
mm10_v2_chr3_+_121291725_121291817	0.130534	Nanog	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr12_-_91384403_91384430	0.124319	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr18_+_57142782_57142796	0.122592	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr13_-_9764943_9764994	0.120492	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr2_+_130274437_130274492	0.119464	Nanog	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr7_-_6730412_6730431	0.116628	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr12_-_20900867_20900867	0.116112	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr9_+_44379490_44379513	0.108814	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr4_+_116708467_116708509	0.0924788	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr4_+_107968332_107968424	0.0917605	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr2_-_3512746_3512814	0.0883628	Nanog	ENSMUST00000056700.7|Hspa14|ENSMUSG00000079615.3|heat shock protein 14 	ENSMUST00000027961.5|Hspa14|ENSMUSG00000051396.8|heat shock protein 14
mm10_v2_chr4_+_129336012_129336041	0.0876976	Nanog	ENSMUST00000119480.1|Zbtb8os|ENSMUSG00000057572.9|zinc finger and BTB domain containing 8 opposite strand
mm10_v2_chr10_-_117224480_117224507	0.0869905	Nanog	ENSMUST00000020382.6|Yeats4|ENSMUSG00000020171.7|YEATS domain containing 4
mm10_v2_chr4_-_129261394_129261406	0.084997	Nanog	ENSMUST00000145261.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr9_+_108662098_108662219	0.083285	Nanog	ENSMUST00000035222.5|Slc25a20|ENSMUSG00000032602.5|solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20
mm10_v2_chr15_+_89089073_89089111	0.0822385	Nanog	ENSMUST00000082439.4|Selo|ENSMUSG00000035757.10|selenoprotein O
mm10_v2_chr19_-_9899450_9899533	0.0784003	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr2_+_3513035_3513074	0.0780904	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr18_+_34736359_34736359	0.0767643	Nanog	ENSMUST00000105038.2|Gm3550|ENSMUSG00000078240.2|predicted gene 3550
mm10_v2_chr15_+_98167806_98167873	0.0754813	Nanog	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr1_-_182282218_182282239	0.069926	Nanog	ENSMUST00000133052.1|Degs1|ENSMUSG00000038633.5|degenerative spermatocyte homolog 1 (Drosophila)
mm10_v2_chr4_-_126968124_126968154	0.0688014	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr15_+_78428650_78428671	0.068491	Nanog	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr3_-_88552859_88553024	0.0666608	Nanog	ENSMUST00000119002.1|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 	ENSMUST00000029698.8|Lamtor2|ENSMUSG00000028062.9|late endosomal/lysosomal adaptor, MAPK and MTOR activator 2
mm10_v2_chr19_+_46356880_46356942	0.0597241	Nanog	ENSMUST00000086969.6|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180 	ENSMUST00000128455.1|Tmem180|ENSMUSG00000025227.8|transmembrane protein 180
mm10_v2_chr1_+_146497614_146497707	0.0591764	Nanog	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr15_-_71954395_71954424	0.0573216	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr7_+_25681158_25681158	0.0519817	Nanog	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr17_-_47834682_47834691	0.0470148	Nanog	ENSMUST00000066368.6|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr7_-_105574324_105574402	0.04196	Nanog	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr17_+_35841491_35841515	0.0406195	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr8_-_90908415_90908415	0.0274424	Nanog	ENSMUST00000098517.1|Gm6658|ENSMUSG00000074171.1|predicted gene 6658
mm10_v2_chr12_-_28635914_28635953	0.0258414	Nanog	ENSMUST00000074267.3|Rps7|ENSMUSG00000061477.3|ribosomal protein S7
mm10_v2_chrX_-_53269786_53269858	0.0224837	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr1_-_172082757_172082795	0.0213097	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr17_-_43543639_43543639	0.0158303	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr15_+_80097866_80097873	0.0117792	Nanog	ENSMUST00000143928.1|Syngr1|ENSMUSG00000022415.6|synaptogyrin 1
mm10_v2_chr12_+_109747903_109748051	0.0104671	Nanog	ENSMUST00000183084.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene 	ENSMUST00000182300.1|Mirg|ENSMUSG00000097391.2|miRNA containing gene
mm10_v2_chr4_+_136310952_136310984	0.00993499	Nanog	ENSMUST00000105850.1|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R 	ENSMUST00000148843.3|Hnrnpr|ENSMUSG00000066037.8|heterogeneous nuclear ribonucleoprotein R
mm10_v2_chr19_+_41933464_41933540	0.00963208	Nanog	ENSMUST00000026154.7|Zdhhc16|ENSMUSG00000025157.7|zinc finger, DHHC domain containing 16
mm10_v2_chr10_+_90576570_90576668	0.00864928	Nanog	ENSMUST00000182786.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182600.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr15_+_21111452_21111452	0.00623392	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr5_-_28467093_28467109	0.000770018	Nanog	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
