mm10_v2_chrX_-_165004829_165004829	1.11223	Nkx2-9	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr7_-_101921186_101921230	0.862306	Nkx2-9	ENSMUST00000106965.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106968.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106967.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr1_+_59256906_59256907	0.519835	Nkx2-9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr6_-_101377897_101378016	0.483437	Nkx2-9	ENSMUST00000075994.6|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr12_-_24493656_24493656	0.47415	Nkx2-9	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr2_+_140152043_140152043	0.463938	Nkx2-9	ENSMUST00000104994.2|Gm17374|ENSMUSG00000078197.2|predicted gene, 17374
mm10_v2_chr7_-_101921175_101921183	0.454372	Nkx2-9	ENSMUST00000098236.2|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr18_+_77185815_77185879	0.416811	Nkx2-9	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr2_+_103969528_103969567	0.406391	Nkx2-9	ENSMUST00000123437.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2 	ENSMUST00000163256.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2
mm10_v2_chr9_+_57504012_57504102	0.398268	Nkx2-9	ENSMUST00000080514.7|Rpp25|ENSMUSG00000062309.7|ribonuclease P/MRP 25 subunit
mm10_v2_chr11_-_84068766_84068801	0.384266	Nkx2-9	ENSMUST00000018792.5|Dusp14|ENSMUSG00000018648.9|dual specificity phosphatase 14
mm10_v2_chr10_+_82378593_82378593	0.370484	Nkx2-9	ENSMUST00000165906.1|Gm4924|ENSMUSG00000073427.3|predicted gene 4924
mm10_v2_chr3_-_89245159_89245199	0.359614	Nkx2-9	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr3_-_37125943_37125969	0.326773	Nkx2-9	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr8_+_123212857_123212911	0.325823	Nkx2-9	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chr11_+_70030023_70030083	0.320201	Nkx2-9	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chrX_+_56779437_56779565	0.301052	Nkx2-9	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chrX_-_95658379_95658390	0.297368	Nkx2-9	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr13_-_71963713_71963729	0.284642	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr6_-_6217023_6217125	0.268036	Nkx2-9	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chrX_-_95658416_95658509	0.261519	Nkx2-9	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr6_-_37442095_37442154	0.258216	Nkx2-9	ENSMUST00000041093.5|Creb3l2|ENSMUSG00000038648.5|cAMP responsive element binding protein 3-like 2
mm10_v2_chrX_-_95658392_95658412	0.255951	Nkx2-9	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr7_+_44848991_44849114	0.24819	Nkx2-9	ENSMUST00000107885.1|Akt1s1|ENSMUSG00000011096.10|AKT1 substrate 1 (proline-rich)
mm10_v2_chr5_+_30105161_30105219	0.244415	Nkx2-9	ENSMUST00000058045.4|Gareml|ENSMUSG00000044576.6|GRB2 associated, regulator of MAPK1-like
mm10_v2_chr15_-_88978958_88979007	0.242887	Nkx2-9	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr16_-_46155077_46155077	0.241965	Nkx2-9	ENSMUST00000059524.5|Gm4737|ENSMUSG00000048087.5|predicted gene 4737
mm10_v2_chr10_+_68723723_68723760	0.239319	Nkx2-9	ENSMUST00000080995.6|Tmem26|ENSMUSG00000060044.7|transmembrane protein 26
mm10_v2_chr13_+_63282142_63282142	0.238784	Nkx2-9	ENSMUST00000159152.1|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr15_+_58933774_58933836	0.238568	Nkx2-9	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr1_-_131097535_131097576	0.236517	Nkx2-9	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr16_+_70313949_70314016	0.234584	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr4_-_141664063_141664170	0.231396	Nkx2-9	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr15_+_79690869_79690905	0.215372	Nkx2-9	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr16_+_30065333_30065351	0.213232	Nkx2-9	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr4_-_72852622_72852648	0.209708	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr6_+_122707489_122707608	0.207261	Nkx2-9	ENSMUST00000112581.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000112580.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000012540.4|Nanog|ENSMUSG00000012396.6|Nanog homeobox
mm10_v2_chr1_-_74600564_74600622	0.205189	Nkx2-9	ENSMUST00000127938.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25 	ENSMUST00000154874.1|Rnf25|ENSMUSG00000026171.6|ring finger protein 25
mm10_v2_chr1_+_87264345_87264370	0.20431	Nkx2-9	ENSMUST00000118687.1|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1 	ENSMUST00000027472.6|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1
mm10_v2_chr3_-_95411176_95411176	0.203471	Nkx2-9	ENSMUST00000177599.1|Gm5070|ENSMUSG00000096177.1|predicted gene 5070
mm10_v2_chr11_+_114668524_114668626	0.200652	Nkx2-9	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr11_+_88718442_88718645	0.199087	Nkx2-9	ENSMUST00000138007.1|C030037D09Rik|ENSMUSG00000087574.1|RIKEN cDNA C030037D09 gene
mm10_v2_chr2_-_25575224_25575224	0.198248	Nkx2-9	ENSMUST00000039156.6|Phpt1|ENSMUSG00000036504.6|phosphohistidine phosphatase 1
mm10_v2_chr16_-_76403673_76403717	0.191259	Nkx2-9	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr15_-_98918131_98918231	0.190404	Nkx2-9	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr2_+_20737306_20737321	0.185825	Nkx2-9	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr6_-_142507805_142507962	0.185527	Nkx2-9	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chr4_-_134853294_134853345	0.185087	Nkx2-9	ENSMUST00000030628.8|Tmem57|ENSMUSG00000028826.8|transmembrane protein 57
mm10_v2_chrX_-_102189371_102189394	0.184888	Nkx2-9	ENSMUST00000033683.7|Rps4x|ENSMUSG00000031320.9|ribosomal protein S4, X-linked
mm10_v2_chr6_-_101377342_101377388	0.184326	Nkx2-9	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr16_-_92466081_92466187	0.180563	Nkx2-9	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr10_+_14523062_14523065	0.176694	Nkx2-9	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chr8_-_70700070_70700088	0.176672	Nkx2-9	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr4_+_44981389_44981461	0.17632	Nkx2-9	ENSMUST00000045078.6|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000128973.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000151148.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase
mm10_v2_chr6_+_66896397_66896479	0.174258	Nkx2-9	ENSMUST00000043148.6|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114228.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114227.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114226.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114225.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12 	ENSMUST00000114224.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr4_+_155891822_155891892	0.170662	Nkx2-9	ENSMUST00000105584.3|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 	ENSMUST00000079031.5|Acap3|ENSMUSG00000029033.10|ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
mm10_v2_chr1_-_181842334_181842401	0.169506	Nkx2-9	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chrX_+_7899350_7899362	0.166588	Nkx2-9	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr2_+_181767040_181767073	0.163036	Nkx2-9	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr17_+_34644764_34644797	0.158992	Nkx2-9	ENSMUST00000036720.8|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr16_-_59555752_59555752	0.157848	Nkx2-9	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr18_-_35662180_35662195	0.157738	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr14_+_75455957_75455996	0.152906	Nkx2-9	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr8_+_95633500_95633586	0.151754	Nkx2-9	ENSMUST00000034094.9|Gins3|ENSMUSG00000031669.9|GINS complex subunit 3 (Psf3 homolog)
mm10_v2_chr11_-_22982090_22982382	0.147834	Nkx2-9	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr17_+_46496753_46496809	0.142905	Nkx2-9	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr5_-_24445254_24445287	0.141059	Nkx2-9	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr4_-_43010226_43010355	0.138902	Nkx2-9	ENSMUST00000030165.4|Fancg|ENSMUSG00000028453.4|Fanconi anemia, complementation group G
mm10_v2_chr7_-_19665005_19665030	0.131896	Nkx2-9	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chrX_+_152001845_152001908	0.131547	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chrX_-_7899220_7899271	0.131356	Nkx2-9	ENSMUST00000033497.2|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr9_-_56161051_56161075	0.128594	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr6_+_135362931_135362961	0.127783	Nkx2-9	ENSMUST00000032330.9|Emp1|ENSMUSG00000030208.9|epithelial membrane protein 1
mm10_v2_chr11_+_83409137_83409289	0.122587	Nkx2-9	ENSMUST00000021022.3|Rasl10b|ENSMUSG00000020684.8|RAS-like, family 10, member B
mm10_v2_chr8_-_79399513_79399532	0.121079	Nkx2-9	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr17_-_25785533_25785673	0.12106	Nkx2-9	ENSMUST00000140738.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000145053.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000138759.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000133071.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like 	ENSMUST00000077938.3|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like
mm10_v2_chr2_+_173022360_173022438	0.11898	Nkx2-9	ENSMUST00000173997.1|Rbm38|ENSMUSG00000027510.11|RNA binding motif protein 38
mm10_v2_chr2_+_127270208_127270271	0.115584	Nkx2-9	ENSMUST00000110375.2|Stard7|ENSMUSG00000027367.10|START domain containing 7
mm10_v2_chr9_-_106887000_106887094	0.111652	Nkx2-9	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr11_+_108920342_108920358	0.0986014	Nkx2-9	ENSMUST00000052915.7|Axin2|ENSMUSG00000000142.9|axin2
mm10_v2_chr2_-_26910569_26910677	0.096236	Nkx2-9	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chrX_+_13632769_13632798	0.0960542	Nkx2-9	ENSMUST00000096492.3|Gpr34|ENSMUSG00000040229.5|G protein-coupled receptor 34
mm10_v2_chr16_+_32271468_32271523	0.0953409	Nkx2-9	ENSMUST00000093183.3|Smco1|ENSMUSG00000046345.4|single-pass membrane protein with coiled-coil domains 1
mm10_v2_chr1_+_171329015_171329145	0.0933739	Nkx2-9	ENSMUST00000111300.1|Dedd|ENSMUSG00000013973.6|death effector domain-containing
mm10_v2_chr13_+_72632597_72632625	0.0882205	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr8_+_105701624_105701693	0.0862118	Nkx2-9	ENSMUST00000093195.6|Pard6a|ENSMUSG00000005699.9|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm10_v2_chr17_-_25785324_25785343	0.0847593	Nkx2-9	ENSMUST00000150324.1|Haghl|ENSMUSG00000061046.3|hydroxyacylglutathione hydrolase-like
mm10_v2_chr6_-_87851011_87851060	0.084448	Nkx2-9	ENSMUST00000113617.1|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein
mm10_v2_chr7_-_102018139_102018206	0.0841362	Nkx2-9	ENSMUST00000094134.3|Il18bp|ENSMUSG00000070427.3|interleukin 18 binding protein
mm10_v2_chr19_-_43752924_43753001	0.0840186	Nkx2-9	ENSMUST00000045562.5|Cox15|ENSMUSG00000040018.9|cytochrome c oxidase assembly protein 15
mm10_v2_chr10_+_94198955_94199043	0.0832299	Nkx2-9	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr6_+_42286676_42286687	0.0819522	Nkx2-9	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr10_+_63061582_63061618	0.0802939	Nkx2-9	ENSMUST00000020266.8|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1 	ENSMUST00000178684.1|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1
mm10_v2_chr6_-_34977999_34977999	0.0787949	Nkx2-9	ENSMUST00000044387.7|2010107G12Rik|ENSMUSG00000029847.7|RIKEN cDNA 2010107G12 gene
mm10_v2_chr2_-_165283599_165283620	0.0783579	Nkx2-9	ENSMUST00000155289.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr3_-_89245005_89245031	0.0725074	Nkx2-9	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr5_+_147430407_147430545	0.0680495	Nkx2-9	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr7_+_75610038_75610080	0.0671683	Nkx2-9	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr10_+_127420867_127420916	0.0645155	Nkx2-9	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chrX_-_7899196_7899206	0.0642442	Nkx2-9	ENSMUST00000115654.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr3_-_34351685_34351715	0.0608761	Nkx2-9	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr15_-_58933688_58933745	0.0595079	Nkx2-9	ENSMUST00000110155.1|Tatdn1|ENSMUSG00000050891.8|TatD DNase domain containing 1
mm10_v2_chr4_-_21685782_21685805	0.0574357	Nkx2-9	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr1_+_74153981_74154003	0.0550171	Nkx2-9	ENSMUST00000027372.7|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2 	ENSMUST00000106899.2|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2
mm10_v2_chr14_+_77156733_77156823	0.0525079	Nkx2-9	ENSMUST00000022589.7|Enox1|ENSMUSG00000022012.8|ecto-NOX disulfide-thiol exchanger 1
mm10_v2_chr3_-_153912966_153912990	0.0522588	Nkx2-9	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr1_-_135688094_135688149	0.0515022	Nkx2-9	ENSMUST00000112103.1|Nav1|ENSMUSG00000090399.1|neuron navigator 1
mm10_v2_chr5_+_117413977_117414011	0.0506926	Nkx2-9	ENSMUST00000180430.1|Ksr2|ENSMUSG00000061578.8|kinase suppressor of ras 2
mm10_v2_chr8_-_80880479_80880499	0.0496697	Nkx2-9	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chrX_+_7878298_7878314	0.0462453	Nkx2-9	ENSMUST00000033495.8|Pim2|ENSMUSG00000031155.8|proviral integration site 2
mm10_v2_chr11_+_72607221_72607307	0.044737	Nkx2-9	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chr2_-_6130117_6130211	0.0436916	Nkx2-9	ENSMUST00000126551.1|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000054254.5|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000114942.2|Proser2|ENSMUSG00000045319.7|proline and serine rich 2
mm10_v2_chr10_+_19934472_19934526	0.0420883	Nkx2-9	ENSMUST00000095806.3|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5 	ENSMUST00000120259.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr4_-_41275091_41275144	0.041695	Nkx2-9	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr16_-_33380717_33380755	0.0412612	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr7_-_126475082_126475130	0.0392493	Nkx2-9	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr11_+_70029742_70029837	0.0391003	Nkx2-9	ENSMUST00000132597.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr11_-_32267547_32267707	0.0388849	Nkx2-9	ENSMUST00000109389.2|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000129010.1|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3 	ENSMUST00000020530.5|Nprl3|ENSMUSG00000020289.9|nitrogen permease regulator-like 3
mm10_v2_chr3_+_138277489_138277495	0.0327418	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr15_+_100469034_100469075	0.0313816	Nkx2-9	ENSMUST00000037001.8|Letmd1|ENSMUSG00000037353.8|LETM1 domain containing 1
mm10_v2_chr1_-_128103016_128103053	0.0308159	Nkx2-9	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chrX_+_42149534_42149683	0.0289926	Nkx2-9	ENSMUST00000127618.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr2_+_80638798_80638834	0.0283649	Nkx2-9	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chr6_+_66896480_66896549	0.0281679	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
mm10_v2_chr11_+_117849286_117849340	0.0262796	Nkx2-9	ENSMUST00000093906.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr17_-_25861456_25861510	0.0255157	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr13_+_75839868_75839881	0.0222837	Nkx2-9	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr10_+_112928501_112928501	0.0214495	Nkx2-9	ENSMUST00000180464.1|Gm26596|ENSMUSG00000097185.1|predicted gene, 26596
mm10_v2_chr6_+_42286709_42286856	0.0204772	Nkx2-9	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chrX_+_74297097_74297178	0.0199003	Nkx2-9	ENSMUST00000019231.5|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147900.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147275.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000114171.3|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1
mm10_v2_chr11_-_109363654_109363654	0.0186618	Nkx2-9	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr8_+_77549393_77549444	0.0182376	Nkx2-9	ENSMUST00000056237.8|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative) 	ENSMUST00000118622.1|Prmt10|ENSMUSG00000037134.10|protein arginine methyltransferase 10 (putative)
mm10_v2_chr15_+_25414175_25414197	0.0149399	Nkx2-9	ENSMUST00000069992.5|Gm5468|ENSMUSG00000056089.5|predicted gene 5468
mm10_v2_chr19_+_43752996_43753137	0.0130175	Nkx2-9	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chrX_+_135993820_135993820	0.00744567	Nkx2-9	ENSMUST00000058119.7|Arxes2|ENSMUSG00000048040.7|adipocyte-related X-chromosome expressed sequence 2
mm10_v2_chr2_-_152398046_152398076	0.00603814	Nkx2-9	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr4_+_36952930_36952970	0.0046971	Nkx2-9	ENSMUST00000144029.1|Gm12371|ENSMUSG00000084898.1|predicted gene 12371
mm10_v2_chr10_+_88091070_88091076	0.000459398	Nkx2-9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
