mm10_v2_chrX_-_73097017_73097095	1.69738	Pax4	ENSMUST00000114524.2|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A 	ENSMUST00000074619.5|Xlr3a|ENSMUSG00000057836.6|X-linked lymphocyte-regulated 3A
mm10_v2_chrX_+_73192222_73192222	1.62696	Pax4	ENSMUST00000101486.4|Xlr3b|ENSMUSG00000073125.4|X-linked lymphocyte-regulated 3B
mm10_v2_chr10_+_119992916_119992958	1.05069	Pax4	ENSMUST00000105261.2|Grip1|ENSMUSG00000034813.10|glutamate receptor interacting protein 1
mm10_v2_chr10_-_64090265_64090297	0.810203	Pax4	ENSMUST00000105439.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr10_-_64090241_64090262	0.766087	Pax4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr2_-_65238625_65238643	0.6807	Pax4	ENSMUST00000112429.2|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000102726.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1 	ENSMUST00000112430.1|Cobll1|ENSMUSG00000034903.12|Cobl-like 1
mm10_v2_chr10_-_62792243_62792368	0.636274	Pax4	ENSMUST00000020268.5|Ccar1|ENSMUSG00000020074.6|cell division cycle and apoptosis regulator 1
mm10_v2_chr13_+_38204928_38204962	0.56852	Pax4	ENSMUST00000091641.5|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12) 	ENSMUST00000178564.1|Snrnp48|ENSMUSG00000021431.8|small nuclear ribonucleoprotein 48 (U11/U12)
mm10_v2_chr9_+_32696005_32696121	0.564964	Pax4	ENSMUST00000034534.6|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000050797.7|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain 	ENSMUST00000184887.1|Ets1|ENSMUSG00000032035.9|E26 avian leukemia oncogene 1, 5' domain
mm10_v2_chr3_+_20057802_20057857	0.550461	Pax4	ENSMUST00000002502.5|Hltf|ENSMUSG00000002428.6|helicase-like transcription factor
mm10_v2_chr12_+_71048338_71048356	0.528332	Pax4	ENSMUST00000135709.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr10_+_107271827_107271850	0.510614	Pax4	ENSMUST00000020057.8|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans) 	ENSMUST00000105280.3|Lin7a|ENSMUSG00000019906.8|lin-7 homolog A (C. elegans)
mm10_v2_chr4_+_147132038_147132038	0.50555	Pax4	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr11_+_43587040_43587072	0.504118	Pax4	ENSMUST00000056256.2|4933415A04Rik|ENSMUSG00000045877.2|RIKEN cDNA 4933415A04 gene
mm10_v2_chrX_-_9662950_9663003	0.49845	Pax4	ENSMUST00000033519.2|Dynlt3|ENSMUSG00000031176.2|dynein light chain Tctex-type 3
mm10_v2_chr19_-_10482874_10482938	0.49544	Pax4	ENSMUST00000038842.3|Ppp1r32|ENSMUSG00000035179.3|protein phosphatase 1, regulatory subunit 32
mm10_v2_chr11_+_78499087_78499123	0.411864	Pax4	ENSMUST00000017488.4|Vtn|ENSMUSG00000017344.4|vitronectin
mm10_v2_chr16_-_45844303_45844381	0.401438	Pax4	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr16_-_45844228_45844236	0.400963	Pax4	ENSMUST00000076333.5|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr4_+_146610961_146610961	0.356718	Pax4	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr9_-_101198999_101199080	0.323646	Pax4	ENSMUST00000066773.7|Ppp2r3a|ENSMUSG00000043154.9|protein phosphatase 2, regulatory subunit B'', alpha
mm10_v2_chr17_+_17402672_17402771	0.286017	Pax4	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chrM_+_3906_3926	0.279376	Pax4	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr2_+_22895482_22895522	0.278821	Pax4	ENSMUST00000053729.7|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr7_+_58658181_58658294	0.276671	Pax4	ENSMUST00000168747.1|Atp10a|ENSMUSG00000025324.7|ATPase, class V, type 10A
mm10_v2_chr15_-_50889691_50889714	0.273967	Pax4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chrX_-_75875101_75875182	0.264605	Pax4	ENSMUST00000114059.3|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr12_-_80112998_80113019	0.263795	Pax4	ENSMUST00000165114.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1 	ENSMUST00000021552.1|Zfp36l1|ENSMUSG00000021127.6|zinc finger protein 36, C3H type-like 1
mm10_v2_chr14_-_12823031_12823133	0.256608	Pax4	ENSMUST00000067491.6|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000177814.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112658.1|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator 	ENSMUST00000112657.2|Cadps|ENSMUSG00000054423.7|Ca2+-dependent secretion activator
mm10_v2_chr4_-_88033328_88033373	0.248837	Pax4	ENSMUST00000078090.5|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr5_-_121502980_121502980	0.229803	Pax4	ENSMUST00000079368.3|Adam1b|ENSMUSG00000062438.3|a disintegrin and metallopeptidase domain 1b
mm10_v2_chr1_-_88008520_88008556	0.229164	Pax4	ENSMUST00000040783.4|Usp40|ENSMUSG00000005501.8|ubiquitin specific peptidase 40
mm10_v2_chr2_+_22895583_22895629	0.227294	Pax4	ENSMUST00000152170.1|Pdss1|ENSMUSG00000026784.8|prenyl (solanesyl) diphosphate synthase, subunit 1
mm10_v2_chr13_+_21717626_21717631	0.225675	Pax4	ENSMUST00000091754.2|Hist1h3h|ENSMUSG00000069312.2|histone cluster 1, H3h
mm10_v2_chr9_-_58159201_58159239	0.224248	Pax4	ENSMUST00000041477.7|Islr|ENSMUSG00000037206.8|immunoglobulin superfamily containing leucine-rich repeat
mm10_v2_chr4_+_136357423_136357541	0.210149	Pax4	ENSMUST00000182167.1|Gm17388|ENSMUSG00000097588.2|predicted gene, 17388
mm10_v2_chr16_+_15637844_15637889	0.209605	Pax4	ENSMUST00000023352.8|Prkdc|ENSMUSG00000022672.8|protein kinase, DNA activated, catalytic polypeptide
mm10_v2_chr13_-_55528511_55528561	0.208502	Pax4	ENSMUST00000047877.4|Dok3|ENSMUSG00000035711.4|docking protein 3
mm10_v2_chr1_-_156034800_156034817	0.208426	Pax4	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr9_-_103222063_103222149	0.199799	Pax4	ENSMUST00000170904.1|Trf|ENSMUSG00000032554.9|transferrin
mm10_v2_chrX_+_143518576_143518599	0.181793	Pax4	ENSMUST00000033640.7|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr1_-_74935549_74935613	0.158613	Pax4	ENSMUST00000094844.3|Ccdc108|ENSMUSG00000047021.8|coiled-coil domain containing 108
mm10_v2_chr13_-_101768154_101768217	0.14887	Pax4	ENSMUST00000055518.6|Pik3r1|ENSMUSG00000041417.9|phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)
mm10_v2_chr2_-_125506385_125506408	0.138242	Pax4	ENSMUST00000028633.6|Fbn1|ENSMUSG00000027204.7|fibrillin 1
mm10_v2_chr15_-_97055942_97055964	0.128339	Pax4	ENSMUST00000023101.3|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr13_+_109632760_109632790	0.126498	Pax4	ENSMUST00000135275.1|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chr2_-_105904484_105904564	0.121723	Pax4	ENSMUST00000122965.1|Elp4|ENSMUSG00000027167.5|elongation protein 4 homolog (S. cerevisiae)
mm10_v2_chr13_-_23430826_23431022	0.117077	Pax4	ENSMUST00000153753.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene 	ENSMUST00000141543.1|C230035I16Rik|ENSMUSG00000085024.1|RIKEN cDNA C230035I16 gene
mm10_v2_chr16_-_14291355_14291408	0.10638	Pax4	ENSMUST00000090287.3|Myh11|ENSMUSG00000018830.8|myosin, heavy polypeptide 11, smooth muscle
mm10_v2_chr19_+_53140430_53140449	0.105163	Pax4	ENSMUST00000111741.2|Add3|ENSMUSG00000025026.8|adducin 3 (gamma)
mm10_v2_chr4_+_150087365_150087541	0.0975254	Pax4	ENSMUST00000094451.3|Gpr157|ENSMUSG00000047875.6|G protein-coupled receptor 157
mm10_v2_chr5_-_116288944_116288977	0.0912799	Pax4	ENSMUST00000086483.3|Ccdc60|ENSMUSG00000043913.8|coiled-coil domain containing 60
mm10_v2_chr12_-_98577940_98578046	0.086593	Pax4	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr14_-_59395381_59395381	0.0837125	Pax4	ENSMUST00000166912.2|Phf11c|ENSMUSG00000091144.2|PHD finger protein 11C
mm10_v2_chr2_-_114654943_114654969	0.0827431	Pax4	ENSMUST00000028640.7|Dph6|ENSMUSG00000057147.7|diphthamine biosynthesis 6 	ENSMUST00000102542.3|Dph6|ENSMUSG00000057147.7|diphthamine biosynthesis 6
mm10_v2_chr19_-_32712287_32712336	0.0789072	Pax4	ENSMUST00000070210.4|Atad1|ENSMUSG00000013662.5|ATPase family, AAA domain containing 1
mm10_v2_chr15_-_89149557_89149650	0.0714196	Pax4	ENSMUST00000088823.3|Mapk11|ENSMUSG00000053137.6|mitogen-activated protein kinase 11
mm10_v2_chr17_+_26941420_26941464	0.0515723	Pax4	ENSMUST00000081285.3|Syngap1|ENSMUSG00000067629.4|synaptic Ras GTPase activating protein 1 homolog (rat) 	ENSMUST00000177932.1|Syngap1|ENSMUSG00000067629.4|synaptic Ras GTPase activating protein 1 homolog (rat)
mm10_v2_chr5_-_116591811_116591830	0.0514915	Pax4	ENSMUST00000076124.5|Srrm4|ENSMUSG00000063919.6|serine/arginine repetitive matrix 4
mm10_v2_chrX_-_8206475_8206547	0.0472267	Pax4	ENSMUST00000089403.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000077595.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000089402.3|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila) 	ENSMUST00000082320.5|Porcn|ENSMUSG00000031169.7|porcupine homolog (Drosophila)
mm10_v2_chr2_-_114654861_114654915	0.03064	Pax4	ENSMUST00000055144.7|Dph6|ENSMUSG00000057147.7|diphthamine biosynthesis 6
mm10_v2_chr4_-_58987095_58987119	0.0270747	Pax4	ENSMUST00000030069.6|Ptgr1|ENSMUSG00000028378.6|prostaglandin reductase 1
mm10_v2_chr12_-_90738438_90738438	0.022109	Pax4	ENSMUST00000082432.3|Dio2|ENSMUSG00000007682.5|deiodinase, iodothyronine, type II
mm10_v2_chr2_+_122234749_122234822	0.0219726	Pax4	ENSMUST00000110551.3|Sord|ENSMUSG00000027227.7|sorbitol dehydrogenase
mm10_v2_chr9_-_48835932_48835962	0.0205911	Pax4	ENSMUST00000093852.3|Zbtb16|ENSMUSG00000066687.4|zinc finger and BTB domain containing 16
mm10_v2_chr18_+_53862087_53862143	0.00679651	Pax4	ENSMUST00000069597.6|Csnk1g3|ENSMUSG00000073563.2|casein kinase 1, gamma 3
mm10_v2_chr13_+_23738804_23738809	0.00348293	Pax4	ENSMUST00000040914.1|Hist1h1c|ENSMUSG00000036181.1|histone cluster 1, H1c
mm10_v2_chr4_+_150281573_150281646	0.00298028	Pax4	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
