mm10_v2_chrX_+_103422010_103422010	9.40526	Pax6	ENSMUST00000182089.1|Gm26992|ENSMUSG00000098078.1|predicted gene, 26992
mm10_v2_chr19_-_57118897_57118979	2.13844	Pax6	ENSMUST00000111526.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57118981_57119026	1.93088	Pax6	ENSMUST00000111528.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1 	ENSMUST00000111529.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1 	ENSMUST00000104902.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_-_162661075_162661147	1.33004	Pax6	ENSMUST00000109442.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109445.2|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109443.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T 	ENSMUST00000109441.1|Ptprt|ENSMUSG00000053141.10|protein tyrosine phosphatase, receptor type, T
mm10_v2_chr8_-_57962564_57962564	1.30852	Pax6	ENSMUST00000098757.3|Galntl6|ENSMUSG00000096914.1|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm10_v2_chr17_-_51831884_51832019	0.841662	Pax6	ENSMUST00000124222.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr5_-_142906702_142906754	0.833224	Pax6	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr11_-_95587691_95587735	0.808224	Pax6	ENSMUST00000000122.6|Ngfr|ENSMUSG00000000120.6|nerve growth factor receptor (TNFR superfamily, member 16)
mm10_v2_chr5_+_90903864_90903899	0.724549	Pax6	ENSMUST00000075433.6|Cxcl2|ENSMUSG00000058427.7|chemokine (C-X-C motif) ligand 2
mm10_v2_chr18_+_37447641_37447674	0.721514	Pax6	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr2_-_75981967_75981967	0.708961	Pax6	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr3_+_65109343_65109420	0.650762	Pax6	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr17_-_17624458_17624496	0.599139	Pax6	ENSMUST00000041047.2|Lnpep|ENSMUSG00000023845.6|leucyl/cystinyl aminopeptidase
mm10_v2_chr19_+_34290653_34290668	0.596035	Pax6	ENSMUST00000025691.5|Fas|ENSMUSG00000024778.6|Fas (TNF receptor superfamily member 6) 	ENSMUST00000112472.2|Fas|ENSMUSG00000024778.6|Fas (TNF receptor superfamily member 6)
mm10_v2_chr9_-_62811592_62811659	0.593088	Pax6	ENSMUST00000034775.8|Fem1b|ENSMUSG00000032244.8|feminization 1 homolog b (C. elegans)
mm10_v2_chr7_+_12897800_12897885	0.558023	Pax6	ENSMUST00000055528.4|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000117189.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000120809.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000119989.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22
mm10_v2_chr11_+_67966442_67966497	0.535915	Pax6	ENSMUST00000021286.4|Stx8|ENSMUSG00000020903.7|syntaxin 8 	ENSMUST00000108675.1|Stx8|ENSMUSG00000020903.7|syntaxin 8
mm10_v2_chr2_+_163602331_163602359	0.464322	Pax6	ENSMUST00000152135.1|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like
mm10_v2_chr13_+_73626886_73627001	0.460136	Pax6	ENSMUST00000022104.7|Tert|ENSMUSG00000021611.8|telomerase reverse transcriptase
mm10_v2_chr10_-_127030789_127030812	0.452272	Pax6	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr9_-_10904697_10904726	0.4441	Pax6	ENSMUST00000162484.1|Cntn5|ENSMUSG00000039488.9|contactin 5
mm10_v2_chr2_+_163602294_163602322	0.43286	Pax6	ENSMUST00000171696.1|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like 	ENSMUST00000109408.3|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like
mm10_v2_chr13_-_24937585_24937691	0.422759	Pax6	ENSMUST00000037615.6|Aldh5a1|ENSMUSG00000035936.6|aldhehyde dehydrogenase family 5, subfamily A1
mm10_v2_chr7_+_75610038_75610080	0.418136	Pax6	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr9_+_50775347_50775369	0.414867	Pax6	ENSMUST00000159576.1|Alg9|ENSMUSG00000032059.7|asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
mm10_v2_chr5_-_18360384_18360473	0.413374	Pax6	ENSMUST00000074694.5|Gnai1|ENSMUSG00000057614.5|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm10_v2_chr12_-_45074457_45074493	0.401627	Pax6	ENSMUST00000053768.6|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chrX_+_36795642_36795653	0.392455	Pax6	ENSMUST00000016463.3|Slc25a5|ENSMUSG00000016319.3|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm10_v2_chr1_-_38836090_38836090	0.389933	Pax6	ENSMUST00000147695.1|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr4_+_155491353_155491411	0.348797	Pax6	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr6_-_118780324_118780324	0.337495	Pax6	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr16_+_4968936_4968936	0.321973	Pax6	ENSMUST00000090457.5|4930451G09Rik|ENSMUSG00000022543.8|RIKEN cDNA 4930451G09 gene
mm10_v2_chr9_+_64179289_64179349	0.277079	Pax6	ENSMUST00000034965.6|Snapc5|ENSMUSG00000032398.6|small nuclear RNA activating complex, polypeptide 5
mm10_v2_chr13_-_113618549_113618565	0.265714	Pax6	ENSMUST00000109241.3|Snx18|ENSMUSG00000042364.10|sorting nexin 18
mm10_v2_chr1_+_156040884_156040898	0.264081	Pax6	ENSMUST00000060404.4|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2
mm10_v2_chr2_+_105904629_105904685	0.249581	Pax6	ENSMUST00000037499.5|Immp1l|ENSMUSG00000042670.5|IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)
mm10_v2_chr18_-_34373313_34373443	0.243563	Pax6	ENSMUST00000006027.5|Reep5|ENSMUSG00000005873.5|receptor accessory protein 5
mm10_v2_chr1_+_156040909_156040925	0.234655	Pax6	ENSMUST00000065648.8|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2 	ENSMUST00000097526.2|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2
mm10_v2_chr16_+_20498817_20498866	0.224733	Pax6	ENSMUST00000003320.6|Eif2b5|ENSMUSG00000003235.6|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm10_v2_chr16_-_22857514_22857576	0.222867	Pax6	ENSMUST00000004576.6|Tbccd1|ENSMUSG00000004462.6|TBCC domain containing 1
mm10_v2_chr4_+_85205417_85205535	0.22016	Pax6	ENSMUST00000030212.8|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107189.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107184.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2
mm10_v2_chr7_+_141228766_141228813	0.208085	Pax6	ENSMUST00000106027.2|Phrf1|ENSMUSG00000038611.10|PHD and ring finger domains 1
mm10_v2_chr4_-_70410422_70410463	0.206996	Pax6	ENSMUST00000144099.1|Cdk5rap2|ENSMUSG00000039298.10|CDK5 regulatory subunit associated protein 2
mm10_v2_chr8_+_95825353_95825354	0.203055	Pax6	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr12_-_51829525_51829553	0.1929	Pax6	ENSMUST00000179265.1|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1 	ENSMUST00000042052.8|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1
mm10_v2_chr11_-_6200411_6200446	0.183889	Pax6	ENSMUST00000066496.3|Nudcd3|ENSMUSG00000053838.8|NudC domain containing 3
mm10_v2_chr8_+_31150307_31150346	0.183246	Pax6	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr17_+_34604262_34604304	0.179256	Pax6	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr6_-_88045190_88045270	0.173724	Pax6	ENSMUST00000113596.1|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family 	ENSMUST00000113600.3|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family
mm10_v2_chr10_+_26229707_26229763	0.145279	Pax6	ENSMUST00000060716.5|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3 	ENSMUST00000164660.1|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3
mm10_v2_chr17_+_29614800_29614844	0.13449	Pax6	ENSMUST00000162588.1|Rnf8|ENSMUSG00000090083.4|ring finger protein 8
mm10_v2_chr15_+_6299797_6299851	0.11985	Pax6	ENSMUST00000159046.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein 	ENSMUST00000161040.1|Dab2|ENSMUSG00000022150.10|disabled 2, mitogen-responsive phosphoprotein
mm10_v2_chr10_+_94550852_94550876	0.113516	Pax6	ENSMUST00000148910.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3 	ENSMUST00000117460.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr13_-_66905322_66905378	0.111999	Pax6	ENSMUST00000021993.4|Uqcrb|ENSMUSG00000021520.4|ubiquinol-cytochrome c reductase binding protein
mm10_v2_chr13_+_66905415_66905415	0.102451	Pax6	ENSMUST00000099412.2|Gm10767|ENSMUSG00000074826.4|predicted gene 10767
mm10_v2_chr3_+_98013503_98013547	0.0921566	Pax6	ENSMUST00000079812.6|Notch2|ENSMUSG00000027878.10|notch 2
mm10_v2_chr4_-_139832920_139833007	0.0866709	Pax6	ENSMUST00000174681.1|Pax7|ENSMUSG00000028736.7|paired box gene 7
mm10_v2_chr13_-_110280103_110280213	0.0844439	Pax6	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr6_-_145048809_145048821	0.0792299	Pax6	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr13_-_32781716_32781779	0.0750948	Pax6	ENSMUST00000134352.1|Mylk4|ENSMUSG00000044951.7|myosin light chain kinase family, member 4 	ENSMUST00000057428.4|Mylk4|ENSMUSG00000044951.7|myosin light chain kinase family, member 4
mm10_v2_chr1_-_180813534_180813583	0.0745898	Pax6	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr4_-_3835595_3835665	0.0727257	Pax6	ENSMUST00000138502.1|Rps20|ENSMUSG00000028234.6|ribosomal protein S20
mm10_v2_chr6_-_124741374_124741402	0.0725471	Pax6	ENSMUST00000004389.5|Grcc10|ENSMUSG00000072772.3|gene rich cluster, C10 gene
mm10_v2_chr1_-_195131536_195131588	0.0701186	Pax6	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr4_+_129820702_129820709	0.067598	Pax6	ENSMUST00000165853.1|Ptp4a2|ENSMUSG00000028788.8|protein tyrosine phosphatase 4a2
mm10_v2_chr10_-_127189981_127190071	0.0640274	Pax6	ENSMUST00000019611.7|Arhgef25|ENSMUSG00000019467.7|Rho guanine nucleotide exchange factor (GEF) 25
mm10_v2_chr11_-_84870712_84870807	0.0593712	Pax6	ENSMUST00000170741.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000172405.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000100686.3|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000108081.2|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2
mm10_v2_chr11_-_104550392_104550419	0.0587465	Pax6	ENSMUST00000106962.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr17_-_57059795_57059863	0.0564201	Pax6	ENSMUST00000040280.7|Slc25a23|ENSMUSG00000046329.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm10_v2_chr7_-_12775658_12775658	0.055161	Pax6	ENSMUST00000046245.5|Zscan18|ENSMUSG00000070822.4|zinc finger and SCAN domain containing 18
mm10_v2_chr8_+_105860634_105860661	0.0510777	Pax6	ENSMUST00000008594.7|Nutf2|ENSMUSG00000008450.7|nuclear transport factor 2
mm10_v2_chr10_-_127030813_127030840	0.0451687	Pax6	ENSMUST00000040560.4|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr19_+_6400611_6400623	0.0406193	Pax6	ENSMUST00000113467.1|Rasgrp2|ENSMUSG00000032946.10|RAS, guanyl releasing protein 2
mm10_v2_chr1_-_180813591_180813632	0.0405549	Pax6	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr14_+_34170640_34170655	0.0383822	Pax6	ENSMUST00000104925.3|Rpl23a-ps3|ENSMUSG00000078126.3|ribosomal protein L23A, pseudogene 3
mm10_v2_chr7_-_80901220_80901269	0.0164287	Pax6	ENSMUST00000146402.1|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73 	ENSMUST00000026816.8|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73
mm10_v2_chr6_-_60829826_60829855	0.0145371	Pax6	ENSMUST00000163779.1|Snca|ENSMUSG00000025889.7|synuclein, alpha
mm10_v2_chr11_+_60699758_60699845	0.00825727	Pax6	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
