mm10_v2_chr4_-_141599835_141600032	0.742215	Rara	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr6_+_114131229_114131246	0.724097	Rara	ENSMUST00000032451.7|Slc6a11|ENSMUSG00000030307.7|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm10_v2_chr1_-_175692624_175692776	0.441141	Rara	ENSMUST00000027809.7|Opn3|ENSMUSG00000026525.9|opsin 3
mm10_v2_chr3_-_54915867_54915887	0.407652	Rara	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr6_+_30723541_30723552	0.401547	Rara	ENSMUST00000115127.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr1_+_134037490_134037530	0.400569	Rara	ENSMUST00000162779.1|Fmod|ENSMUSG00000041559.7|fibromodulin
mm10_v2_chr10_+_21993890_21993955	0.386323	Rara	ENSMUST00000092673.4|Sgk1|ENSMUSG00000019970.9|serum/glucocorticoid regulated kinase 1
mm10_v2_chrX_-_59567348_59567472	0.379113	Rara	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr10_+_4611971_4612021	0.325862	Rara	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr2_+_169633517_169633676	0.25633	Rara	ENSMUST00000109157.1|Tshz2|ENSMUSG00000047907.10|teashirt zinc finger family member 2
mm10_v2_chr13_+_94875600_94875611	0.256012	Rara	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr6_+_18848571_18848582	0.255118	Rara	ENSMUST00000056398.8|Naa38|ENSMUSG00000044155.8|N(alpha)-acetyltransferase 38, NatC auxiliary subunit
mm10_v2_chr4_-_46991842_46991916	0.22321	Rara	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr14_+_76488436_76488541	0.205568	Rara	ENSMUST00000101618.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr12_-_108893197_108893215	0.196778	Rara	ENSMUST00000161154.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase 	ENSMUST00000161410.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chrX_+_74254736_74254752	0.184966	Rara	ENSMUST00000096424.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chrX_+_106187100_106187179	0.178587	Rara	ENSMUST00000081593.6|Pgk1|ENSMUSG00000062070.6|phosphoglycerate kinase 1
mm10_v2_chr11_+_94629741_94629834	0.170338	Rara	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr14_+_58070547_58070547	0.166298	Rara	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr14_-_70207637_70207675	0.16302	Rara	ENSMUST00000022682.5|Sorbs3|ENSMUSG00000022091.5|sorbin and SH3 domain containing 3
mm10_v2_chr7_+_120635176_120635251	0.162106	Rara	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr4_+_150853919_150854050	0.158094	Rara	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr6_-_54972603_54972626	0.148396	Rara	ENSMUST00000060655.8|Nod1|ENSMUSG00000038058.8|nucleotide-binding oligomerization domain containing 1
mm10_v2_chr14_-_16575456_16575501	0.147145	Rara	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr11_+_4986824_4986894	0.146093	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr6_+_115601907_115601940	0.143675	Rara	ENSMUST00000000449.7|Mkrn2|ENSMUSG00000000439.8|makorin, ring finger protein, 2
mm10_v2_chr4_+_32238950_32238964	0.125841	Rara	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr7_-_141429351_141429429	0.118985	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr7_+_45873127_45873187	0.118284	Rara	ENSMUST00000107718.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr7_+_45872772_45872857	0.117663	Rara	ENSMUST00000002855.5|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 	ENSMUST00000107719.1|Kdelr1|ENSMUSG00000002778.6|KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1
mm10_v2_chr3_-_88058446_88058535	0.111529	Rara	ENSMUST00000029708.6|Apoa1bp|ENSMUSG00000028070.6|apolipoprotein A-I binding protein
mm10_v2_chr3_+_79884576_79884597	0.109446	Rara	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr6_-_6217023_6217125	0.0978563	Rara	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr3_-_75556759_75556871	0.0956411	Rara	ENSMUST00000162138.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000029424.5|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10 	ENSMUST00000161137.1|Pdcd10|ENSMUSG00000027835.5|programmed cell death 10
mm10_v2_chr2_+_120977017_120977107	0.0915467	Rara	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr8_-_94876269_94876321	0.0902318	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr17_-_56133817_56133854	0.0874206	Rara	ENSMUST00000167545.1|Sema6b|ENSMUSG00000001227.5|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm10_v2_chrX_+_74254782_74254872	0.0810636	Rara	ENSMUST00000119197.1|Emd|ENSMUSG00000001964.8|emerin 	ENSMUST00000088313.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr2_-_181365306_181365404	0.0804256	Rara	ENSMUST00000108808.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000170190.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1 	ENSMUST00000127988.1|Arfrp1|ENSMUSG00000038671.9|ADP-ribosylation factor related protein 1
mm10_v2_chr4_-_128609981_128610098	0.0773744	Rara	ENSMUST00000141040.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000147876.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000097877.2|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20
mm10_v2_chr9_-_109074049_109074140	0.0763782	Rara	ENSMUST00000161521.1|Atrip|ENSMUSG00000025646.2|ATR interacting protein 	ENSMUST00000045011.2|Atrip|ENSMUSG00000025646.2|ATR interacting protein
mm10_v2_chr2_+_26319741_26319773	0.0743799	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr8_+_11556061_11556099	0.0662335	Rara	ENSMUST00000054399.4|Ing1|ENSMUSG00000045969.7|inhibitor of growth family, member 1
mm10_v2_chr3_+_79884496_79884571	0.0653772	Rara	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_+_5845243_5845311	0.0584213	Rara	ENSMUST00000127116.1|Nudt5|ENSMUSG00000025817.6|nudix (nucleoside diphosphate linked moiety X)-type motif 5
mm10_v2_chr5_+_53590215_53590351	0.0583062	Rara	ENSMUST00000037618.6|Rbpj|ENSMUSG00000039191.6|recombination signal binding protein for immunoglobulin kappa J region
mm10_v2_chr5_-_105239533_105239533	0.05823	Rara	ENSMUST00000065588.6|Gbp10|ENSMUSG00000054588.8|guanylate-binding protein 10
mm10_v2_chr7_-_141429433_141429491	0.0575837	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr4_+_41348996_41349064	0.0566844	Rara	ENSMUST00000072866.5|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1 	ENSMUST00000108060.3|Ubap1|ENSMUSG00000028437.8|ubiquitin-associated protein 1
mm10_v2_chr15_+_82256023_82256130	0.0555381	Rara	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr6_-_39810881_39810988	0.0527349	Rara	ENSMUST00000114797.1|Mrps33|ENSMUSG00000029918.8|mitochondrial ribosomal protein S33 	ENSMUST00000031978.8|Mrps33|ENSMUSG00000029918.8|mitochondrial ribosomal protein S33
mm10_v2_chr3_-_36475688_36475843	0.0520168	Rara	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr8_-_119778380_119778431	0.050671	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
mm10_v2_chr11_-_50953745_50953768	0.0487517	Rara	ENSMUST00000162420.1|Prop1|ENSMUSG00000044542.3|paired like homeodomain factor 1 	ENSMUST00000051159.2|Prop1|ENSMUSG00000044542.3|paired like homeodomain factor 1
mm10_v2_chr10_+_79910856_79910856	0.0424011	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr10_-_89257790_89257831	0.038649	Rara	ENSMUST00000045601.7|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr5_+_138255608_138255725	0.0380988	Rara	ENSMUST00000062067.6|Lamtor4|ENSMUSG00000050552.7|late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
mm10_v2_chr5_+_53267103_53267127	0.028058	Rara	ENSMUST00000121042.1|Smim20|ENSMUSG00000061461.6|small integral membrane protein 20
mm10_v2_chr8_+_69659263_69659263	0.0275209	Rara	ENSMUST00000169125.1|Zfp964|ENSMUSG00000091764.1|zinc finger protein 964
mm10_v2_chr2_-_34754364_34754561	0.0241883	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr10_+_19951055_19951055	0.0235072	Rara	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr9_-_83146601_83146614	0.0217964	Rara	ENSMUST00000162246.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3 	ENSMUST00000161796.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3
mm10_v2_chr2_-_91070180_91070249	0.0201391	Rara	ENSMUST00000153367.1|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000079976.3|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr9_-_43105718_43105793	0.0183549	Rara	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr3_-_95015214_95015246	0.0146484	Rara	ENSMUST00000128438.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687 	ENSMUST00000149747.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687 	ENSMUST00000019482.1|Zfp687|ENSMUSG00000019338.7|zinc finger protein 687
mm10_v2_chr4_+_141444654_141444714	0.0122703	Rara	ENSMUST00000006377.6|Zbtb17|ENSMUSG00000006215.6|zinc finger and BTB domain containing 17
mm10_v2_chr2_+_131262469_131262563	0.0102853	Rara	ENSMUST00000150843.1|Pank2|ENSMUSG00000037514.11|pantothenate kinase 2
mm10_v2_chr6_+_91157373_91157397	0.00725569	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chr8_+_106150359_106150417	0.000193064	Rara	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
