mm10_v2_chr15_-_75048837_75048837	1.7624	Sox1	ENSMUST00000179762.1|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1 	ENSMUST00000065408.9|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1
mm10_v2_chr3_-_34005490_34005514	1.19616	Sox1	ENSMUST00000060997.2|Gm9791|ENSMUSG00000044434.2|predicted pseudogene 9791
mm10_v2_chr15_-_74997634_74997634	0.973828	Sox1	ENSMUST00000023248.6|Ly6a|ENSMUSG00000075602.4|lymphocyte antigen 6 complex, locus A
mm10_v2_chr17_+_47737030_47737107	0.775153	Sox1	ENSMUST00000086932.3|Tfeb|ENSMUSG00000023990.12|transcription factor EB
mm10_v2_chr7_+_80343091_80343146	0.596645	Sox1	ENSMUST00000032747.5|Hddc3|ENSMUSG00000030532.5|HD domain containing 3
mm10_v2_chr17_-_47692466_47692466	0.409915	Sox1	ENSMUST00000113300.1|Prickle4|ENSMUSG00000096549.3|prickle homolog 4 (Drosophila)
mm10_v2_chr16_-_37654408_37654453	0.388743	Sox1	ENSMUST00000023514.3|Ndufb4|ENSMUSG00000022820.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm10_v2_chr9_-_108305941_108305958	0.377864	Sox1	ENSMUST00000044725.7|Tcta|ENSMUSG00000039461.7|T cell leukemia translocation altered gene
mm10_v2_chr17_+_34969912_34969912	0.376426	Sox1	ENSMUST00000173680.1|Gm20481|ENSMUSG00000092609.1|predicted gene 20481
mm10_v2_chr10_+_84756055_84756084	0.364417	Sox1	ENSMUST00000060397.6|Rfx4|ENSMUSG00000020037.9|regulatory factor X, 4 (influences HLA class II expression)
mm10_v2_chr7_+_101896340_101896431	0.296457	Sox1	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr5_+_21186267_21186340	0.275107	Sox1	ENSMUST00000036031.8|Gsap|ENSMUSG00000039934.8|gamma-secretase activating protein
mm10_v2_chr4_+_136357423_136357541	0.241567	Sox1	ENSMUST00000182167.1|Gm17388|ENSMUSG00000097588.2|predicted gene, 17388
mm10_v2_chr11_-_68853119_68853140	0.237486	Sox1	ENSMUST00000018880.7|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr6_+_117841174_117841254	0.215741	Sox1	ENSMUST00000112859.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000137224.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000164472.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000112861.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000035638.8|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637
mm10_v2_chr7_-_57509995_57510056	0.213499	Sox1	ENSMUST00000068456.6|Gabra5|ENSMUSG00000055078.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
mm10_v2_chr9_-_114390633_114390687	0.213109	Sox1	ENSMUST00000084881.4|Crtap|ENSMUSG00000032431.6|cartilage associated protein
mm10_v2_chr14_-_30923547_30923565	0.210028	Sox1	ENSMUST00000170415.1|Itih3|ENSMUSG00000006522.9|inter-alpha trypsin inhibitor, heavy chain 3
mm10_v2_chr7_+_119690026_119690026	0.206402	Sox1	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr7_-_127890918_127890970	0.18762	Sox1	ENSMUST00000121394.1|Prss53|ENSMUSG00000044139.11|protease, serine, 53
mm10_v2_chr17_+_34263209_34263256	0.131777	Sox1	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr6_+_114648811_114648889	0.129592	Sox1	ENSMUST00000182510.1|Atg7|ENSMUSG00000030314.10|autophagy related 7
mm10_v2_chrX_+_74297097_74297178	0.120643	Sox1	ENSMUST00000019231.5|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147900.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147275.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000114171.3|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1
mm10_v2_chr6_+_121183667_121183941	0.0921681	Sox1	ENSMUST00000118234.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000088561.3|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000137432.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000120066.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26
mm10_v2_chr17_-_34287770_34287830	0.0884638	Sox1	ENSMUST00000174751.1|H2-Aa|ENSMUSG00000036594.8|histocompatibility 2, class II antigen A, alpha 	ENSMUST00000040655.6|H2-Aa|ENSMUSG00000036594.8|histocompatibility 2, class II antigen A, alpha
mm10_v2_chr7_-_46919915_46919986	0.0704617	Sox1	ENSMUST00000143413.1|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101 	ENSMUST00000014546.8|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101
mm10_v2_chr18_+_37496997_37496997	0.0668263	Sox1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr14_-_30923754_30923765	0.0633611	Sox1	ENSMUST00000006697.8|Itih3|ENSMUSG00000006522.9|inter-alpha trypsin inhibitor, heavy chain 3
mm10_v2_chr8_+_13159135_13159168	0.032585	Sox1	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr5_-_13121766_13121766	0.0264936	Sox1	ENSMUST00000078246.4|Gm10108|ENSMUSG00000062038.4|predicted pseudogene 10108
mm10_v2_chr11_-_68853019_68853101	0.0164526	Sox1	ENSMUST00000108672.1|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr7_+_67655414_67655447	0.00738075	Sox1	ENSMUST00000107470.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr5_-_140649018_140649052	0.00155839	Sox1	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
