mm10_v2_chr12_-_31713873_31713947	8.20091	Sox2	ENSMUST00000057783.4|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22 	ENSMUST00000174480.2|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22 	ENSMUST00000176710.1|Gpr22|ENSMUSG00000044067.6|G protein-coupled receptor 22
mm10_v2_chr4_+_102254739_102254761	6.43615	Sox2	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr4_+_62965560_62965617	5.94713	Sox2	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr4_+_125490688_125490704	5.73211	Sox2	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr6_+_51432663_51432674	5.38463	Sox2	ENSMUST00000005103.5|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr10_-_122047293_122047322	5.16822	Sox2	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr6_+_51432678_51432784	4.93589	Sox2	ENSMUST00000160133.1|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr3_+_103576081_103576147	4.77703	Sox2	ENSMUST00000183637.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000117221.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118117.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118563.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr6_-_144209558_144209647	4.66976	Sox2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209471_144209487	4.61593	Sox2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_144209448_144209469	4.57424	Sox2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr2_-_57124003_57124071	4.49233	Sox2	ENSMUST00000112629.1|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr14_+_61138445_61138495	4.43101	Sox2	ENSMUST00000089394.3|Sacs|ENSMUSG00000048279.11|sacsin 	ENSMUST00000119509.1|Sacs|ENSMUSG00000048279.11|sacsin
mm10_v2_chrX_-_143933089_143933142	4.40505	Sox2	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr9_+_118478344_118478451	4.28648	Sox2	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr18_-_43059418_43059471	4.22042	Sox2	ENSMUST00000025377.7|Ppp2r2b|ENSMUSG00000024500.12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform
mm10_v2_chr10_+_80150448_80150482	3.94033	Sox2	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr5_+_75574916_75575001	3.91228	Sox2	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr9_+_118478851_118478866	3.80883	Sox2	ENSMUST00000150633.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr7_-_120982260_120982312	3.7969	Sox2	ENSMUST00000033169.8|Cdr2|ENSMUSG00000030878.10|cerebellar degeneration-related 2
mm10_v2_chr4_+_102570065_102570124	3.75829	Sox2	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr5_-_147076482_147076586	3.72214	Sox2	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr2_-_57114970_57115038	3.71899	Sox2	ENSMUST00000028166.2|Nr4a2|ENSMUSG00000026826.7|nuclear receptor subfamily 4, group A, member 2
mm10_v2_chr3_+_65109343_65109420	3.57145	Sox2	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr6_+_15185456_15185563	3.38675	Sox2	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr6_-_138421379_138421452	3.36437	Sox2	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr12_-_54986363_54986529	3.34197	Sox2	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr12_-_54986328_54986342	3.21901	Sox2	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr2_+_68861564_68861586	3.19878	Sox2	ENSMUST00000176018.1|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr6_-_99028874_99028942	3.19802	Sox2	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr8_-_69184177_69184240	3.13587	Sox2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr7_-_103853199_103853240	3.07124	Sox2	ENSMUST00000033229.3|Hbb-y|ENSMUSG00000052187.3|hemoglobin Y, beta-like embryonic chain
mm10_v2_chr4_+_116221590_116221618	3.06212	Sox2	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr2_+_158666690_158666740	2.92517	Sox2	ENSMUST00000103116.3|Ppp1r16b|ENSMUSG00000037754.7|protein phosphatase 1, regulatory (inhibitor) subunit 16B
mm10_v2_chr14_-_49783327_49783394	2.92516	Sox2	ENSMUST00000118129.1|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene 	ENSMUST00000036972.6|3632451O06Rik|ENSMUSG00000036242.8|RIKEN cDNA 3632451O06 gene
mm10_v2_chr1_+_161142706_161142767	2.92271	Sox2	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr2_-_64975762_64975795	2.83888	Sox2	ENSMUST00000156765.1|Grb14|ENSMUSG00000026888.8|growth factor receptor bound protein 14
mm10_v2_chr1_+_133246092_133246099	2.81297	Sox2	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr4_-_148130678_148130706	2.76506	Sox2	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr4_-_82705735_82705754	2.75591	Sox2	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr3_+_153973436_153973520	2.74111	Sox2	ENSMUST00000089948.5|Slc44a5|ENSMUSG00000028360.9|solute carrier family 44, member 5
mm10_v2_chr1_+_66322102_66322119	2.72656	Sox2	ENSMUST00000123647.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr1_+_136131382_136131404	2.70204	Sox2	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr8_-_109251698_109251728	2.68099	Sox2	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr6_-_138422898_138422999	2.64408	Sox2	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr9_-_103761820_103761847	2.55309	Sox2	ENSMUST00000049452.8|Tmem108|ENSMUSG00000042757.9|transmembrane protein 108
mm10_v2_chr10_+_61475782_61475834	2.55231	Sox2	ENSMUST00000049242.7|Lrrc20|ENSMUSG00000037151.7|leucine rich repeat containing 20
mm10_v2_chr4_+_102421518_102421573	2.5459	Sox2	ENSMUST00000106904.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr7_+_100493337_100493370	2.54365	Sox2	ENSMUST00000126534.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr6_+_17065129_17065233	2.52643	Sox2	ENSMUST00000115467.4|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000154266.2|Tes|ENSMUSG00000029552.13|testis derived transcript 	ENSMUST00000076654.7|Tes|ENSMUSG00000029552.13|testis derived transcript
mm10_v2_chr12_+_95692212_95692246	2.52221	Sox2	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr17_+_72918298_72918316	2.51336	Sox2	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr4_+_32238950_32238964	2.38414	Sox2	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr6_+_47244359_47244417	2.33642	Sox2	ENSMUST00000060839.6|Cntnap2|ENSMUSG00000039419.10|contactin associated protein-like 2
mm10_v2_chr12_-_45074112_45074306	2.33362	Sox2	ENSMUST00000120531.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn) 	ENSMUST00000143376.1|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chrX_+_143518671_143518703	2.3336	Sox2	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr7_+_139248477_139248532	2.32548	Sox2	ENSMUST00000093993.3|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B 	ENSMUST00000172136.1|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B
mm10_v2_chr4_-_132049058_132049156	2.32199	Sox2	ENSMUST00000105981.2|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000084253.3|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000141291.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr10_+_80300997_80301050	2.31002	Sox2	ENSMUST00000140828.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2 	ENSMUST00000138909.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr17_+_80944611_80944644	2.26455	Sox2	ENSMUST00000025092.4|Tmem178|ENSMUSG00000024245.4|transmembrane protein 178
mm10_v2_chr7_+_45216671_45216695	2.23797	Sox2	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr4_+_116221689_116221698	2.22711	Sox2	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr2_-_113217051_113217094	2.19668	Sox2	ENSMUST00000080673.5|Ryr3|ENSMUSG00000057378.8|ryanodine receptor 3
mm10_v2_chr6_+_107529717_107529780	2.19588	Sox2	ENSMUST00000049285.8|Lrrn1|ENSMUSG00000034648.8|leucine rich repeat protein 1, neuronal
mm10_v2_chrX_-_143933204_143933311	2.17401	Sox2	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr8_-_119840522_119840579	2.1642	Sox2	ENSMUST00000168698.1|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium) 	ENSMUST00000034285.6|Cotl1|ENSMUSG00000031827.6|coactosin-like 1 (Dictyostelium)
mm10_v2_chr6_-_52012476_52012551	2.16345	Sox2	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr6_+_77242715_77242729	2.16132	Sox2	ENSMUST00000161677.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr5_-_50058908_50059010	2.14294	Sox2	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr11_-_33843526_33843629	2.13754	Sox2	ENSMUST00000065970.5|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1 	ENSMUST00000109340.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr15_+_100038635_100038669	2.12724	Sox2	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr6_+_77242644_77242697	2.11691	Sox2	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr18_-_47368446_47368486	2.11519	Sox2	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr8_-_84237042_84237061	2.10898	Sox2	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr5_-_131538687_131538717	2.07915	Sox2	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr5_+_65131184_65131231	2.07614	Sox2	ENSMUST00000031089.5|Klhl5|ENSMUSG00000054920.6|kelch-like 5 	ENSMUST00000101191.3|Klhl5|ENSMUSG00000054920.6|kelch-like 5
mm10_v2_chr15_-_84855093_84855127	2.05396	Sox2	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr7_+_75643223_75643319	2.03735	Sox2	ENSMUST00000137959.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr4_+_86053887_86053987	2.03499	Sox2	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr3_-_108402589_108402589	2.03487	Sox2	ENSMUST00000147565.1|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr2_-_77280589_77280648	2.0153	Sox2	ENSMUST00000102659.1|Sestd1|ENSMUSG00000042272.11|SEC14 and spectrin domains 1
mm10_v2_chr10_-_89257578_89257622	2.00598	Sox2	ENSMUST00000182341.1|Ano4|ENSMUSG00000035189.10|anoctamin 4 	ENSMUST00000182613.1|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr1_-_25228814_25228834	1.9878	Sox2	ENSMUST00000126626.1|Bai3|ENSMUSG00000033569.11|brain-specific angiogenesis inhibitor 3
mm10_v2_chr5_+_77266196_77266232	1.9704	Sox2	ENSMUST00000113449.1|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr1_+_89070406_89070421	1.96869	Sox2	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr1_+_171250416_171250433	1.96092	Sox2	ENSMUST00000111315.1|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 	ENSMUST00000006570.5|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm10_v2_chr2_-_30474199_30474222	1.95719	Sox2	ENSMUST00000065134.2|Ier5l|ENSMUSG00000089762.2|immediate early response 5-like
mm10_v2_chr8_-_24438937_24438952	1.95475	Sox2	ENSMUST00000052622.4|1810011O10Rik|ENSMUSG00000056313.4|RIKEN cDNA 1810011O10 gene
mm10_v2_chr8_+_35587780_35587825	1.9321	Sox2	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr11_+_67586675_67586720	1.92799	Sox2	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr10_+_80151154_80151375	1.92778	Sox2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr2_+_55437100_55437182	1.91342	Sox2	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr5_+_44100442_44100442	1.9105	Sox2	ENSMUST00000072800.4|Gm16401|ENSMUSG00000072962.2|predicted gene 16401
mm10_v2_chr8_-_122699066_122699119	1.90872	Sox2	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr4_-_149676043_149676065	1.90041	Sox2	ENSMUST00000118704.1|Pik3cd|ENSMUSG00000039936.12|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm10_v2_chr7_+_100493795_100493848	1.88858	Sox2	ENSMUST00000129324.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr4_+_116221633_116221661	1.86592	Sox2	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr8_+_45507768_45507818	1.86434	Sox2	ENSMUST00000067065.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000098788.3|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000067107.7|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000171337.2|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000138049.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000141039.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr13_-_54687644_54687688	1.85052	Sox2	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr2_+_68861433_68861510	1.83483	Sox2	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr6_-_82774448_82774463	1.83341	Sox2	ENSMUST00000000642.4|Hk2|ENSMUSG00000000628.4|hexokinase 2
mm10_v2_chr7_+_64501949_64502048	1.82652	Sox2	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr15_-_39943963_39944029	1.80752	Sox2	ENSMUST00000110305.2|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr13_+_16014457_16014475	1.80689	Sox2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr12_-_45074457_45074493	1.80305	Sox2	ENSMUST00000053768.6|Stxbp6|ENSMUSG00000046314.9|syntaxin binding protein 6 (amisyn)
mm10_v2_chr17_-_87282793_87282821	1.78493	Sox2	ENSMUST00000146560.2|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr2_-_114052804_114052887	1.76394	Sox2	ENSMUST00000090269.6|Actc1|ENSMUSG00000068614.7|actin, alpha, cardiac muscle 1
mm10_v2_chr2_+_52857844_52857868	1.75487	Sox2	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr17_-_87282771_87282786	1.75301	Sox2	ENSMUST00000161759.1|4833418N02Rik|ENSMUSG00000085287.2|RIKEN cDNA 4833418N02 gene
mm10_v2_chr11_-_33843405_33843461	1.75122	Sox2	ENSMUST00000101368.2|Kcnip1|ENSMUSG00000053519.9|Kv channel-interacting protein 1
mm10_v2_chr11_+_3649759_3649759	1.73723	Sox2	ENSMUST00000140242.1|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr13_+_93304940_93305278	1.73613	Sox2	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr13_-_8858762_8858829	1.72739	Sox2	ENSMUST00000176329.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr11_-_96005872_96005952	1.72675	Sox2	ENSMUST00000013559.2|Igf2bp1|ENSMUSG00000013415.3|insulin-like growth factor 2 mRNA binding protein 1
mm10_v2_chr9_-_50727921_50728008	1.71161	Sox2	ENSMUST00000118707.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000034566.8|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr7_+_127233044_127233073	1.70467	Sox2	ENSMUST00000106312.3|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr6_-_99266494_99266540	1.70446	Sox2	ENSMUST00000113326.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr7_-_132317198_132317228	1.69689	Sox2	ENSMUST00000080215.5|Chst15|ENSMUSG00000030930.7|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm10_v2_chr14_+_60378242_60378292	1.68362	Sox2	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr9_+_74976096_74976177	1.67612	Sox2	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr15_-_99705490_99705490	1.67566	Sox2	ENSMUST00000163472.2|Gm17349|ENSMUSG00000091604.2|predicted gene, 17349
mm10_v2_chr6_-_56362356_56362519	1.67549	Sox2	ENSMUST00000044505.7|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000166102.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000164037.1|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C 	ENSMUST00000114327.2|Pde1c|ENSMUSG00000004347.10|phosphodiesterase 1C
mm10_v2_chr9_-_50728067_50728129	1.66785	Sox2	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr9_+_102718424_102718490	1.66203	Sox2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr13_-_49147931_49148037	1.65116	Sox2	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr17_-_35703971_35703994	1.63893	Sox2	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr18_-_47368830_47368878	1.63288	Sox2	ENSMUST00000019791.7|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000115449.2|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr3_-_17786834_17786898	1.63212	Sox2	ENSMUST00000099198.2|Gm10742|ENSMUSG00000074674.2|predicted gene 10742
mm10_v2_chr7_+_97081711_97081778	1.62379	Sox2	ENSMUST00000004622.5|Gab2|ENSMUSG00000004508.5|growth factor receptor bound protein 2-associated protein 2
mm10_v2_chr7_+_127233227_127233317	1.6092	Sox2	ENSMUST00000056232.6|Zfp553|ENSMUSG00000045598.9|zinc finger protein 553
mm10_v2_chr11_+_115765420_115765466	1.60275	Sox2	ENSMUST00000093912.4|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000136720.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000103034.3|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000141871.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene
mm10_v2_chr2_-_6722187_6722236	1.60041	Sox2	ENSMUST00000182657.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr10_+_4266323_4266341	1.59754	Sox2	ENSMUST00000045730.5|Akap12|ENSMUSG00000038587.8|A kinase (PRKA) anchor protein (gravin) 12
mm10_v2_chr4_-_58499398_58499409	1.59515	Sox2	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr2_-_140671440_140671458	1.58964	Sox2	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr19_-_4334001_4334031	1.58905	Sox2	ENSMUST00000176653.1|Kdm2a|ENSMUSG00000054611.10|lysine (K)-specific demethylase 2A
mm10_v2_chr3_-_127499095_127499137	1.5792	Sox2	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr7_+_29309429_29309513	1.57803	Sox2	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr7_+_64502090_64502155	1.56795	Sox2	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr18_-_43393346_43393381	1.56749	Sox2	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr3_+_96830069_96830115	1.56705	Sox2	ENSMUST00000058865.7|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr12_+_110601439_110601452	1.54643	Sox2	ENSMUST00000018851.7|Dync1h1|ENSMUSG00000018707.7|dynein cytoplasmic 1 heavy chain 1
mm10_v2_chr6_-_38875965_38875986	1.5405	Sox2	ENSMUST00000160360.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr2_+_68117713_68117713	1.53191	Sox2	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chrX_-_72656135_72656199	1.52618	Sox2	ENSMUST00000055966.6|Gabra3|ENSMUSG00000031343.7|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3
mm10_v2_chr10_-_82764088_82764144	1.52374	Sox2	ENSMUST00000130911.1|Nfyb|ENSMUSG00000020248.12|nuclear transcription factor-Y beta
mm10_v2_chr13_+_93304799_93304935	1.51939	Sox2	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr1_+_66321708_66321719	1.51622	Sox2	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr3_+_32708546_32708738	1.51203	Sox2	ENSMUST00000029214.7|Actl6a|ENSMUSG00000027671.8|actin-like 6A
mm10_v2_chr10_+_69706326_69706382	1.50845	Sox2	ENSMUST00000182992.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr15_-_44428303_44428337	1.50619	Sox2	ENSMUST00000038719.6|Nudcd1|ENSMUSG00000038736.9|NudC domain containing 1
mm10_v2_chr4_-_20778527_20778593	1.5061	Sox2	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr3_+_131110350_131110471	1.49997	Sox2	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr11_-_102819114_102819214	1.49805	Sox2	ENSMUST00000068933.5|Gjc1|ENSMUSG00000034520.8|gap junction protein, gamma 1
mm10_v2_chr14_+_59201418_59201503	1.47446	Sox2	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr10_-_29144194_29144194	1.47282	Sox2	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr1_-_134235420_134235443	1.46518	Sox2	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr16_-_76373014_76373103	1.46506	Sox2	ENSMUST00000054178.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr4_-_149307506_149307703	1.46345	Sox2	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr9_+_35267857_35267894	1.45135	Sox2	ENSMUST00000034543.4|Rpusd4|ENSMUSG00000032044.4|RNA pseudouridylate synthase domain containing 4
mm10_v2_chr17_-_29007925_29007962	1.44239	Sox2	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr11_+_67586520_67586546	1.4423	Sox2	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr18_+_82914632_82914664	1.44071	Sox2	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr15_-_96642883_96642984	1.43997	Sox2	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr12_-_83921809_83921898	1.43662	Sox2	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr3_+_69316857_69316869	1.4183	Sox2	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr11_-_78497734_78497793	1.41353	Sox2	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr7_+_29303938_29303951	1.40794	Sox2	ENSMUST00000108231.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr2_-_140671400_140671427	1.40486	Sox2	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr2_-_165898951_165899016	1.39747	Sox2	ENSMUST00000136842.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr5_+_26904682_26904710	1.39281	Sox2	ENSMUST00000120555.1|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr1_+_6487231_6487338	1.37803	Sox2	ENSMUST00000140079.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131494.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr11_-_107470699_107470726	1.3671	Sox2	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr11_+_117332335_117332348	1.36595	Sox2	ENSMUST00000106349.1|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr4_-_135272798_135272819	1.34154	Sox2	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr17_-_12769605_12769700	1.33988	Sox2	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr7_+_29303958_29303983	1.32584	Sox2	ENSMUST00000049977.6|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr5_+_141856692_141856787	1.30954	Sox2	ENSMUST00000074546.6|Sdk1|ENSMUSG00000039683.10|sidekick homolog 1 (chicken)
mm10_v2_chr1_+_66386968_66386999	1.30542	Sox2	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr14_+_73142490_73142564	1.30318	Sox2	ENSMUST00000170370.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000164822.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000165429.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr17_-_70851189_70851216	1.29833	Sox2	ENSMUST00000059775.8|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr2_-_25983056_25983154	1.29814	Sox2	ENSMUST00000127823.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000134882.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr7_-_98361275_98361295	1.29707	Sox2	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr10_-_95324072_95324114	1.29429	Sox2	ENSMUST00000053594.5|Cradd|ENSMUSG00000045867.9|CASP2 and RIPK1 domain containing adaptor with death domain
mm10_v2_chr8_-_122678072_122678182	1.28738	Sox2	ENSMUST00000006525.7|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) 	ENSMUST00000064674.6|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr5_+_90931196_90931311	1.28524	Sox2	ENSMUST00000071652.4|Mthfd2l|ENSMUSG00000029376.7|methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
mm10_v2_chr15_+_88751649_88751661	1.28444	Sox2	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr10_+_45067167_45067279	1.27847	Sox2	ENSMUST00000099858.2|Prep|ENSMUSG00000019849.10|prolyl endopeptidase
mm10_v2_chr2_+_102706356_102706438	1.2712	Sox2	ENSMUST00000123759.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000111212.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000005220.4|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr16_-_34513944_34514056	1.27051	Sox2	ENSMUST00000151491.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114960.2|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr3_+_65528457_65528471	1.26781	Sox2	ENSMUST00000130705.1|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr2_+_118900377_118900397	1.26753	Sox2	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr10_+_80148263_80148279	1.26653	Sox2	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr17_+_87282880_87282950	1.261	Sox2	ENSMUST00000041110.5|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7 	ENSMUST00000125875.1|Ttc7|ENSMUSG00000036918.9|tetratricopeptide repeat domain 7
mm10_v2_chr16_-_11066141_11066165	1.25813	Sox2	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr5_-_38684743_38684826	1.258	Sox2	ENSMUST00000057258.4|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000178760.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000179555.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000180214.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B
mm10_v2_chr8_-_70120816_70120873	1.25703	Sox2	ENSMUST00000002412.8|Ncan|ENSMUSG00000002341.8|neurocan
mm10_v2_chr10_-_94035705_94035769	1.25618	Sox2	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr11_+_114851142_114851173	1.25379	Sox2	ENSMUST00000133245.1|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C 	ENSMUST00000122967.2|Gprc5c|ENSMUSG00000051043.10|G protein-coupled receptor, family C, group 5, member C
mm10_v2_chr19_+_8664005_8664120	1.25294	Sox2	ENSMUST00000035444.3|Chrm1|ENSMUSG00000032773.3|cholinergic receptor, muscarinic 1, CNS 	ENSMUST00000163785.1|Chrm1|ENSMUSG00000032773.3|cholinergic receptor, muscarinic 1, CNS
mm10_v2_chr17_+_8340399_8340406	1.25062	Sox2	ENSMUST00000069742.6|Prr18|ENSMUSG00000055945.7|proline rich region 18
mm10_v2_chr3_-_38484831_38484864	1.25006	Sox2	ENSMUST00000120875.1|Ankrd50|ENSMUSG00000044864.10|ankyrin repeat domain 50
mm10_v2_chr15_-_39943689_39943788	1.24892	Sox2	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr11_-_70220794_70220832	1.24564	Sox2	ENSMUST00000159867.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr9_+_21616230_21616281	1.2451	Sox2	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr15_+_59648644_59648687	1.24408	Sox2	ENSMUST00000118228.1|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chrX_-_167209149_167209164	1.23644	Sox2	ENSMUST00000112176.1|Tmsb4x|ENSMUSG00000049775.10|thymosin, beta 4, X chromosome
mm10_v2_chr10_-_61452658_61452813	1.23642	Sox2	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr6_+_54040078_54040091	1.23264	Sox2	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr11_-_76468396_76468473	1.23056	Sox2	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr16_-_34514084_34514128	1.23044	Sox2	ENSMUST00000089655.5|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr7_-_98361310_98361328	1.23015	Sox2	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr1_+_135584773_135584773	1.22846	Sox2	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr7_-_25005895_25005937	1.22758	Sox2	ENSMUST00000102858.3|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENSMUST00000080882.6|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm10_v2_chr3_+_88615367_88615434	1.2252	Sox2	ENSMUST00000176539.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr1_-_54926311_54926402	1.22438	Sox2	ENSMUST00000179030.1|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44 	ENSMUST00000044359.9|Ankrd44|ENSMUSG00000052331.8|ankyrin repeat domain 44
mm10_v2_chr8_+_45628176_45628219	1.21813	Sox2	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr3_-_141982224_141982264	1.212	Sox2	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr17_-_28486082_28486149	1.21062	Sox2	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr10_+_41476314_41476392	1.20607	Sox2	ENSMUST00000119962.1|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000019967.9|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000099934.4|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1
mm10_v2_chr1_+_6734827_6734874	1.20445	Sox2	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr10_+_26078255_26078255	1.20054	Sox2	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr4_+_54945038_54945082	1.20026	Sox2	ENSMUST00000133895.1|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr7_-_127875633_127875673	1.20019	Sox2	ENSMUST00000106261.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668 	ENSMUST00000144721.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668
mm10_v2_chr2_+_3114220_3114225	1.19857	Sox2	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr2_+_37516618_37516634	1.1944	Sox2	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr6_+_39873271_39873271	1.19129	Sox2	ENSMUST00000180886.1|Tmem178b|ENSMUSG00000057716.6|transmembrane protein 178B
mm10_v2_chr2_-_140671462_140671476	1.18724	Sox2	ENSMUST00000110057.2|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr4_-_63403330_63403354	1.18606	Sox2	ENSMUST00000035724.4|Akna|ENSMUSG00000039158.11|AT-hook transcription factor
mm10_v2_chr11_+_3289168_3289281	1.18441	Sox2	ENSMUST00000134089.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr16_+_23224724_23224804	1.18246	Sox2	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chrX_-_165004829_165004829	1.1813	Sox2	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr4_+_43406435_43406615	1.17882	Sox2	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr5_-_122779278_122779434	1.17833	Sox2	ENSMUST00000111668.3|Camkk2|ENSMUSG00000029471.9|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm10_v2_chr2_-_130839683_130839696	1.17715	Sox2	ENSMUST00000119422.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr9_+_61373482_61373535	1.17361	Sox2	ENSMUST00000160541.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161207.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159630.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr4_+_47208005_47208161	1.17244	Sox2	ENSMUST00000082303.6|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1 	ENSMUST00000102917.4|Col15a1|ENSMUSG00000028339.11|collagen, type XV, alpha 1
mm10_v2_chr2_-_11502025_11502049	1.16938	Sox2	ENSMUST00000114846.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr6_+_61180313_61180400	1.16892	Sox2	ENSMUST00000126214.1|Ccser1|ENSMUSG00000039578.10|coiled-coil serine rich 1
mm10_v2_chr9_+_21616166_21616177	1.16062	Sox2	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr1_+_133045984_133046082	1.15918	Sox2	ENSMUST00000077730.5|Pik3c2b|ENSMUSG00000026447.10|phosphoinositide-3-kinase, class 2, beta polypeptide
mm10_v2_chr12_+_24974914_24974948	1.1565	Sox2	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr19_-_5894100_5894155	1.15591	Sox2	ENSMUST00000055911.4|Tigd3|ENSMUSG00000044390.4|tigger transposable element derived 3
mm10_v2_chr10_-_63244135_63244170	1.15536	Sox2	ENSMUST00000054837.3|1700120B22Rik|ENSMUSG00000045391.3|RIKEN cDNA 1700120B22 gene
mm10_v2_chr6_-_72958465_72958496	1.15468	Sox2	ENSMUST00000114050.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr17_-_35697971_35698001	1.15096	Sox2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr1_-_60566708_60566769	1.15066	Sox2	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr15_-_79658749_79658798	1.13925	Sox2	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr1_-_64122256_64122321	1.13674	Sox2	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr3_-_89365233_89365253	1.13579	Sox2	ENSMUST00000070820.6|Dcst1|ENSMUSG00000042672.9|DC-STAMP domain containing 1
mm10_v2_chr4_-_97584605_97584610	1.1282	Sox2	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr13_+_60602182_60602231	1.12358	Sox2	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chrX_-_12128350_12128367	1.11912	Sox2	ENSMUST00000123004.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr15_+_41830921_41831001	1.11886	Sox2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr5_-_73256555_73256636	1.11831	Sox2	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr1_-_182019927_182019989	1.11503	Sox2	ENSMUST00000078719.6|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111030.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000177811.1|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111024.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111025.2|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila)
mm10_v2_chr17_+_31296191_31296253	1.11477	Sox2	ENSMUST00000165149.1|Slc37a1|ENSMUSG00000024036.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm10_v2_chr7_+_73375494_73375549	1.11403	Sox2	ENSMUST00000094312.5|Rgma|ENSMUSG00000070509.9|RGM domain family, member A 	ENSMUST00000119206.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr3_+_98382538_98382553	1.11025	Sox2	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr3_+_98382438_98382520	1.10931	Sox2	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr13_-_54565299_54565362	1.10664	Sox2	ENSMUST00000153065.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000126295.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000143144.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000132136.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr17_-_25433263_25433307	1.10188	Sox2	ENSMUST00000159623.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr2_+_124610573_124610613	1.1016	Sox2	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr4_+_106911517_106911667	1.10109	Sox2	ENSMUST00000072753.6|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000097934.3|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr13_-_54749849_54749893	1.1006	Sox2	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr6_-_72958097_72958302	1.10038	Sox2	ENSMUST00000114049.1|Tmsb10|ENSMUSG00000079523.2|thymosin, beta 10
mm10_v2_chr2_-_6721890_6721928	1.09957	Sox2	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_-_83121385_83121559	1.09516	Sox2	ENSMUST00000146328.1|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000113936.3|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1 	ENSMUST00000032111.4|Wbp1|ENSMUSG00000030035.8|WW domain binding protein 1
mm10_v2_chr11_-_70220776_70220790	1.09144	Sox2	ENSMUST00000141290.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr2_-_18048347_18048449	1.08951	Sox2	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr10_-_94035789_94035817	1.08907	Sox2	ENSMUST00000123201.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000119818.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr17_-_35704000_35704139	1.08632	Sox2	ENSMUST00000097333.3|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000003628.6|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr11_+_115381906_115381933	1.08625	Sox2	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr15_+_25622525_25622558	1.08175	Sox2	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr9_+_108826320_108826320	1.07638	Sox2	ENSMUST00000024238.5|Celsr3|ENSMUSG00000023473.6|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm10_v2_chr7_-_113347273_113347293	1.07546	Sox2	ENSMUST00000117577.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr13_+_42709482_42709581	1.07355	Sox2	ENSMUST00000066928.5|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1 	ENSMUST00000148891.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr1_-_30949756_30949770	1.07342	Sox2	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
mm10_v2_chr8_-_83166170_83166170	1.07284	Sox2	ENSMUST00000098605.2|Gm10645|ENSMUSG00000074228.2|predicted gene 10645
mm10_v2_chr5_-_9725305_9725352	1.07221	Sox2	ENSMUST00000004076.3|Grm3|ENSMUSG00000003974.5|glutamate receptor, metabotropic 3
mm10_v2_chr10_+_37139558_37139558	1.06666	Sox2	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr1_-_33814516_33814576	1.06327	Sox2	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr10_+_39612934_39612934	1.06151	Sox2	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr5_+_138116903_138117041	1.06137	Sox2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr1_-_153487639_153487662	1.06061	Sox2	ENSMUST00000042141.5|Dhx9|ENSMUSG00000042699.5|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm10_v2_chr13_-_54749627_54749697	1.06004	Sox2	ENSMUST00000099506.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr13_+_9276477_9276620	1.05123	Sox2	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr9_+_61373608_61373672	1.05065	Sox2	ENSMUST00000161689.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr9_-_75597643_75597656	1.0498	Sox2	ENSMUST00000164100.1|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr6_-_67037399_67037417	1.04499	Sox2	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr8_-_8660773_8660773	1.03627	Sox2	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr6_-_28831747_28831747	1.02902	Sox2	ENSMUST00000062304.5|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr16_-_76373827_76373852	1.02831	Sox2	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr13_-_95618442_95618475	1.02808	Sox2	ENSMUST00000059193.5|F2r|ENSMUSG00000048376.5|coagulation factor II (thrombin) receptor
mm10_v2_chr15_+_85205949_85206045	1.02792	Sox2	ENSMUST00000057410.7|Fbln1|ENSMUSG00000006369.8|fibulin 1 	ENSMUST00000109432.3|Fbln1|ENSMUSG00000006369.8|fibulin 1
mm10_v2_chr2_-_11502090_11502126	1.02748	Sox2	ENSMUST00000179584.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000170196.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000171188.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114845.3|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114844.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000100411.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr5_+_124862674_124862771	1.02516	Sox2	ENSMUST00000111417.2|Zfp664|ENSMUSG00000079215.2|zinc finger protein 664
mm10_v2_chr17_-_35701937_35701964	1.02433	Sox2	ENSMUST00000155628.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr6_-_50382831_50382847	1.02351	Sox2	ENSMUST00000114468.2|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr9_-_110117303_110117353	1.02269	Sox2	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr7_-_83884289_83884341	1.01843	Sox2	ENSMUST00000094216.3|Mesdc1|ENSMUSG00000070462.3|mesoderm development candidate 1
mm10_v2_chr7_-_29505447_29505473	1.0102	Sox2	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr17_+_32506446_32506473	1.01013	Sox2	ENSMUST00000165999.1|Cyp4f17|ENSMUSG00000091586.1|cytochrome P450, family 4, subfamily f, polypeptide 17
mm10_v2_chr9_+_119402444_119402501	1.00988	Sox2	ENSMUST00000035093.8|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB 	ENSMUST00000165044.1|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB
mm10_v2_chr14_+_26514554_26514554	1.00863	Sox2	ENSMUST00000104927.1|Gm2178|ENSMUSG00000078128.1|predicted gene 2178
mm10_v2_chr8_-_36249292_36249516	1.00626	Sox2	ENSMUST00000065297.5|Lonrf1|ENSMUSG00000039633.6|LON peptidase N-terminal domain and ring finger 1
mm10_v2_chr5_+_66968559_66968577	1.00051	Sox2	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr13_-_54565368_54565435	0.998642	Sox2	ENSMUST00000026989.8|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr7_+_100494044_100494088	0.998481	Sox2	ENSMUST00000153287.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr2_+_155381808_155381884	0.994658	Sox2	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr17_-_25273155_25273265	0.992855	Sox2	ENSMUST00000173231.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr18_-_61536522_61536558	0.980467	Sox2	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr5_+_137761680_137761714	0.977126	Sox2	ENSMUST00000110983.2|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4 	ENSMUST00000031738.4|Tsc22d4|ENSMUSG00000029723.10|TSC22 domain family, member 4
mm10_v2_chr11_-_78497458_78497539	0.974308	Sox2	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr6_-_121003099_121003153	0.970932	Sox2	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chr2_+_156312589_156312633	0.969855	Sox2	ENSMUST00000073942.5|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2 	ENSMUST00000109580.1|Cnbd2|ENSMUSG00000038085.7|cyclic nucleotide binding domain containing 2
mm10_v2_chr17_-_35704574_35704632	0.968988	Sox2	ENSMUST00000117301.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000134995.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr11_+_20647149_20647156	0.968888	Sox2	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr16_-_17125106_17125146	0.967208	Sox2	ENSMUST00000093336.6|2610318N02Rik|ENSMUSG00000049916.9|RIKEN cDNA 2610318N02 gene
mm10_v2_chr7_-_73537621_73537766	0.96677	Sox2	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr18_+_36939178_36939318	0.966031	Sox2	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chrX_-_133688978_133689005	0.961538	Sox2	ENSMUST00000149154.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19 	ENSMUST00000167944.1|Pcdh19|ENSMUSG00000051323.10|protocadherin 19
mm10_v2_chr2_-_51149100_51149115	0.961308	Sox2	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr9_+_110132015_110132102	0.959482	Sox2	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr2_+_92185438_92185463	0.958397	Sox2	ENSMUST00000128781.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr8_-_109962127_109962213	0.95608	Sox2	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr4_-_44167988_44168008	0.955476	Sox2	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr5_-_124352233_124352302	0.953525	Sox2	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr4_+_132638987_132639118	0.952349	Sox2	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr15_-_79658889_79658956	0.948972	Sox2	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr16_+_23226014_23226077	0.94861	Sox2	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr2_-_151973387_151973399	0.947844	Sox2	ENSMUST00000109863.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr7_+_45215753_45215852	0.946774	Sox2	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr2_-_11502067_11502080	0.946406	Sox2	ENSMUST00000028114.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000049849.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr1_-_168431695_168431750	0.936193	Sox2	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr2_+_65930117_65930190	0.935789	Sox2	ENSMUST00000176109.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr15_-_79254737_79254764	0.93564	Sox2	ENSMUST00000039752.3|Slc16a8|ENSMUSG00000032988.3|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm10_v2_chr3_-_127225917_127225959	0.933908	Sox2	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr2_+_27009926_27009935	0.933396	Sox2	ENSMUST00000114005.2|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114004.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114006.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1 	ENSMUST00000114007.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr14_+_25607797_25607838	0.932825	Sox2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr14_+_61599493_61599548	0.932129	Sox2	ENSMUST00000039562.6|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr12_+_24708984_24709029	0.93033	Sox2	ENSMUST00000154588.1|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr5_+_34949435_34949504	0.926197	Sox2	ENSMUST00000030984.7|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr13_-_13393592_13393624	0.92585	Sox2	ENSMUST00000021738.8|Gpr137b|ENSMUSG00000021306.10|G protein-coupled receptor 137B
mm10_v2_chr16_+_17451981_17452034	0.92477	Sox2	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr5_+_111417263_111417442	0.922041	Sox2	ENSMUST00000094463.4|Mn1|ENSMUSG00000070576.4|meningioma 1
mm10_v2_chr7_+_105375053_105375098	0.919162	Sox2	ENSMUST00000106805.2|Gm5901|ENSMUSG00000078611.2|predicted gene 5901
mm10_v2_chr9_-_105495475_105495489	0.914821	Sox2	ENSMUST00000176036.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chrX_-_12128386_12128412	0.914047	Sox2	ENSMUST00000145872.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr2_-_151973840_151973966	0.914028	Sox2	ENSMUST00000109865.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A 	ENSMUST00000109864.1|Fam110a|ENSMUSG00000027459.10|family with sequence similarity 110, member A
mm10_v2_chr7_-_115824699_115824752	0.913979	Sox2	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr5_-_102069905_102069940	0.912667	Sox2	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr2_-_27426992_27427061	0.911031	Sox2	ENSMUST00000056176.7|Vav2|ENSMUSG00000009621.12|vav 2 oncogene
mm10_v2_chr6_-_42693087_42693100	0.90966	Sox2	ENSMUST00000121083.1|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr5_-_44099220_44099237	0.901516	Sox2	ENSMUST00000165909.1|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr2_-_153241402_153241426	0.901514	Sox2	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr6_+_134035691_134035717	0.901095	Sox2	ENSMUST00000081028.6|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene) 	ENSMUST00000111963.1|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene)
mm10_v2_chr11_+_46055973_46056068	0.899214	Sox2	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr10_+_79996479_79996505	0.898473	Sox2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr3_+_65528404_65528431	0.898106	Sox2	ENSMUST00000047906.3|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr15_+_100154379_100154411	0.895156	Sox2	ENSMUST00000023768.6|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila) 	ENSMUST00000108971.2|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr13_-_54687696_54687809	0.891496	Sox2	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr16_-_96082513_96082573	0.887935	Sox2	ENSMUST00000113827.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr5_+_37245792_37245883	0.883113	Sox2	ENSMUST00000031004.7|Crmp1|ENSMUSG00000029121.9|collapsin response mediator protein 1
mm10_v2_chr6_+_54681687_54681783	0.878874	Sox2	ENSMUST00000046276.6|2410066E13Rik|ENSMUSG00000038065.7|RIKEN cDNA 2410066E13 gene
mm10_v2_chrX_+_93675088_93675161	0.875289	Sox2	ENSMUST00000045898.3|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr5_+_88583527_88583590	0.875072	Sox2	ENSMUST00000031229.6|Rufy3|ENSMUSG00000029291.7|RUN and FYVE domain containing 3
mm10_v2_chr2_-_152830615_152830680	0.874074	Sox2	ENSMUST00000146380.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134902.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000134357.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000109820.3|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr12_+_24708241_24708292	0.872052	Sox2	ENSMUST00000020980.5|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr10_-_82623190_82623248	0.871966	Sox2	ENSMUST00000183363.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000079648.5|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000185168.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene
mm10_v2_chr5_+_34336928_34336937	0.871221	Sox2	ENSMUST00000182047.1|Rnf4|ENSMUSG00000029110.7|ring finger protein 4
mm10_v2_chr9_+_61373219_61373438	0.870121	Sox2	ENSMUST00000162583.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161993.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160882.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160724.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000162973.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159050.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr12_+_84996309_84996419	0.869425	Sox2	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr12_+_75818294_75818356	0.869066	Sox2	ENSMUST00000143031.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000044217.9|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000150317.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr4_+_150281573_150281646	0.866835	Sox2	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
mm10_v2_chr1_+_34579693_34579751	0.865685	Sox2	ENSMUST00000052670.8|Amer3|ENSMUSG00000045174.8|APC membrane recruitment 3
mm10_v2_chr1_+_158362330_158362411	0.865174	Sox2	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr9_-_20976762_20976793	0.863188	Sox2	ENSMUST00000054197.5|S1pr2|ENSMUSG00000043895.5|sphingosine-1-phosphate receptor 2
mm10_v2_chr3_-_127225847_127225915	0.859776	Sox2	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr17_+_26414820_26414965	0.857636	Sox2	ENSMUST00000182897.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000183077.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000053020.7|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila)
mm10_v2_chr14_-_40966807_40966848	0.853892	Sox2	ENSMUST00000047652.5|Tspan14|ENSMUSG00000037824.5|tetraspanin 14
mm10_v2_chr11_+_117232254_117232329	0.85384	Sox2	ENSMUST00000106354.2|Sept9|ENSMUSG00000059248.7|septin 9
mm10_v2_chr12_+_21111778_21111954	0.853411	Sox2	ENSMUST00000050990.9|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chrX_+_93654863_93654981	0.849884	Sox2	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr5_+_142960343_142960363	0.848754	Sox2	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr16_+_19760902_19761054	0.846351	Sox2	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr6_+_54039558_54039575	0.844224	Sox2	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr11_-_90638062_90638100	0.843956	Sox2	ENSMUST00000020858.7|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107875.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107872.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000143203.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4
mm10_v2_chr2_-_164389095_164389095	0.843607	Sox2	ENSMUST00000167427.1|Slpi|ENSMUSG00000017002.8|secretory leukocyte peptidase inhibitor
mm10_v2_chr8_-_40634750_40634775	0.841952	Sox2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr7_-_63938862_63938933	0.83811	Sox2	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr11_+_101316200_101316275	0.835423	Sox2	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr10_+_80299084_80299126	0.834957	Sox2	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr15_-_100403243_100403270	0.833671	Sox2	ENSMUST00000124324.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr8_+_123411424_123411562	0.83178	Sox2	ENSMUST00000071134.3|Tubb3|ENSMUSG00000062380.3|tubulin, beta 3 class III
mm10_v2_chr4_+_128727585_128727710	0.830035	Sox2	ENSMUST00000106079.3|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000133439.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr1_+_6730051_6730117	0.829311	Sox2	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr10_-_84440591_84440604	0.828614	Sox2	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr12_+_108605757_108605814	0.826593	Sox2	ENSMUST00000109854.2|Evl|ENSMUSG00000021262.8|Ena-vasodilator stimulated phosphoprotein
mm10_v2_chr12_-_112829351_112829426	0.825359	Sox2	ENSMUST00000062092.5|Cdca4|ENSMUSG00000047832.8|cell division cycle associated 4
mm10_v2_chr9_-_102354685_102354699	0.82411	Sox2	ENSMUST00000035129.7|Ephb1|ENSMUSG00000032537.8|Eph receptor B1 	ENSMUST00000085169.5|Ephb1|ENSMUSG00000032537.8|Eph receptor B1
mm10_v2_chr6_-_23248264_23248390	0.820998	Sox2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chrX_+_38189829_38189842	0.811695	Sox2	ENSMUST00000131124.1|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr9_+_102720287_102720336	0.810102	Sox2	ENSMUST00000130602.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr15_-_103215285_103215366	0.809136	Sox2	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr7_-_121035096_121035096	0.808773	Sox2	ENSMUST00000065740.2|Gm9905|ENSMUSG00000053358.2|predicted gene 9905
mm10_v2_chr3_-_107931579_107931742	0.80859	Sox2	ENSMUST00000133947.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000124215.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106688.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106687.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr1_-_93101825_93101849	0.808429	Sox2	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr14_+_54431597_54431673	0.807369	Sox2	ENSMUST00000089688.4|Mmp14|ENSMUSG00000000957.8|matrix metallopeptidase 14 (membrane-inserted)
mm10_v2_chr6_-_148944750_148944826	0.80711	Sox2	ENSMUST00000111562.1|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A 	ENSMUST00000081956.5|Fam60a|ENSMUSG00000039985.8|family with sequence similarity 60, member A
mm10_v2_chr13_-_47043116_47043343	0.806338	Sox2	ENSMUST00000110118.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000124948.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000021806.3|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase 	ENSMUST00000136864.1|Tpmt|ENSMUSG00000021376.4|thiopurine methyltransferase
mm10_v2_chr2_-_152951456_152951540	0.806288	Sox2	ENSMUST00000123121.2|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr4_+_127021311_127021339	0.804893	Sox2	ENSMUST00000030623.7|Sfpq|ENSMUSG00000028820.7|splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
mm10_v2_chr10_-_60831571_60831588	0.803615	Sox2	ENSMUST00000077925.5|Unc5b|ENSMUSG00000020099.7|unc-5 homolog B (C. elegans)
mm10_v2_chr4_-_118179628_118179682	0.801428	Sox2	ENSMUST00000097911.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr2_-_146511899_146511979	0.793241	Sox2	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr3_+_88621436_88621555	0.792487	Sox2	ENSMUST00000170653.2|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177303.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr5_+_77265454_77265549	0.790888	Sox2	ENSMUST00000080359.5|Rest|ENSMUSG00000029249.9|RE1-silencing transcription factor
mm10_v2_chr5_+_105415738_105415849	0.789049	Sox2	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr6_-_42693030_42693070	0.787882	Sox2	ENSMUST00000045140.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr5_+_21646033_21646057	0.786864	Sox2	ENSMUST00000095495.2|Armc10|ENSMUSG00000038525.10|armadillo repeat containing 10
mm10_v2_chr6_-_29212240_29212297	0.786401	Sox2	ENSMUST00000160878.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000078155.5|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr2_-_6884940_6884957	0.78446	Sox2	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr13_+_93304066_93304138	0.783417	Sox2	ENSMUST00000109493.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr4_-_99120898_99120935	0.783047	Sox2	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr2_-_27475600_27475611	0.782139	Sox2	ENSMUST00000147736.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr6_-_86733218_86733256	0.782069	Sox2	ENSMUST00000113679.1|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr4_-_81442756_81442836	0.780982	Sox2	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chr4_+_43957678_43957735	0.775537	Sox2	ENSMUST00000107855.1|Glipr2|ENSMUSG00000028480.8|GLI pathogenesis-related 2
mm10_v2_chr1_+_39900883_39900963	0.772131	Sox2	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr7_+_30095150_30095192	0.770549	Sox2	ENSMUST00000130526.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260 	ENSMUST00000108200.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260
mm10_v2_chr8_+_70863127_70863127	0.767687	Sox2	ENSMUST00000050921.2|A230052G05Rik|ENSMUSG00000020887.3|RIKEN cDNA A230052G05 gene
mm10_v2_chr11_-_46312220_46312358	0.767138	Sox2	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr17_+_55445375_55445389	0.766201	Sox2	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr2_-_152951547_152951608	0.764777	Sox2	ENSMUST00000037715.6|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr13_+_65278810_65278838	0.764219	Sox2	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr8_-_111910171_111910199	0.762064	Sox2	ENSMUST00000034430.4|Chst5|ENSMUSG00000031952.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
mm10_v2_chrX_+_47912387_47912442	0.758157	Sox2	ENSMUST00000001202.8|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe 	ENSMUST00000115020.1|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe
mm10_v2_chr8_+_124793061_124793092	0.753682	Sox2	ENSMUST00000041106.7|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr12_-_84946921_84946923	0.75328	Sox2	ENSMUST00000169161.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr6_-_47594967_47595047	0.750327	Sox2	ENSMUST00000081721.6|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114618.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila) 	ENSMUST00000114616.1|Ezh2|ENSMUSG00000029687.10|enhancer of zeste homolog 2 (Drosophila)
mm10_v2_chr19_-_5729618_5729700	0.749017	Sox2	ENSMUST00000116558.2|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000099955.3|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B 	ENSMUST00000161368.1|Fam89b|ENSMUSG00000024939.6|family with sequence similarity 89, member B
mm10_v2_chr8_+_34807287_34807310	0.74791	Sox2	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr14_+_101840501_101840554	0.745405	Sox2	ENSMUST00000159026.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr11_+_101316917_101316977	0.742188	Sox2	ENSMUST00000151385.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr2_-_119787504_119787537	0.741802	Sox2	ENSMUST00000110793.1|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000099529.2|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000048493.5|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1
mm10_v2_chr18_+_80046854_80046904	0.740455	Sox2	ENSMUST00000070219.7|Pard6g|ENSMUSG00000056214.8|par-6 partitioning defective 6 homolog gamma (C. elegans)
mm10_v2_chr4_-_132212255_132212303	0.737784	Sox2	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr11_+_94044111_94044121	0.728466	Sox2	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr18_-_77565050_77565162	0.728316	Sox2	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr19_+_44992127_44992136	0.727921	Sox2	ENSMUST00000179305.1|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr1_+_191717834_191717904	0.725662	Sox2	ENSMUST00000110855.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1 	ENSMUST00000133076.1|Lpgat1|ENSMUSG00000026623.10|lysophosphatidylglycerol acyltransferase 1
mm10_v2_chr10_-_19011948_19011973	0.722965	Sox2	ENSMUST00000105527.1|Tnfaip3|ENSMUSG00000019850.5|tumor necrosis factor, alpha-induced protein 3
mm10_v2_chr9_-_105495037_105495117	0.716901	Sox2	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr17_+_43016536_43016591	0.71674	Sox2	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr13_+_65278839_65278903	0.715001	Sox2	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr17_-_87446854_87446935	0.713962	Sox2	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr16_+_17070127_17070215	0.713293	Sox2	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr9_+_108508005_108508076	0.710125	Sox2	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr16_+_78301673_78301760	0.709747	Sox2	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr19_+_40831296_40831313	0.708918	Sox2	ENSMUST00000119316.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr7_-_16874845_16874889	0.707119	Sox2	ENSMUST00000181501.1|9330104G04Rik|ENSMUSG00000097842.1|RIKEN cDNA 9330104G04 gene
mm10_v2_chr2_-_152951688_152951700	0.703395	Sox2	ENSMUST00000109811.3|Dusp15|ENSMUSG00000042662.10|dual specificity phosphatase-like 15
mm10_v2_chr6_+_115675983_115676004	0.699382	Sox2	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr2_-_7396192_7396241	0.699017	Sox2	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_-_51560816_51560878	0.698173	Sox2	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr10_+_36974558_36974579	0.697379	Sox2	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr5_-_24577467_24577493	0.696892	Sox2	ENSMUST00000030795.8|Abcf2|ENSMUSG00000028953.9|ATP-binding cassette, sub-family F (GCN20), member 2
mm10_v2_chr16_-_50432340_50432409	0.695573	Sox2	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr5_+_115429944_115429997	0.695163	Sox2	ENSMUST00000067168.5|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr11_-_69822144_69822180	0.69305	Sox2	ENSMUST00000045771.6|Spem1|ENSMUSG00000041165.6|sperm maturation 1
mm10_v2_chr4_-_140648736_140648781	0.690969	Sox2	ENSMUST00000039204.3|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000105799.1|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000097820.2|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr6_+_47835650_47835725	0.689625	Sox2	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr6_+_54039935_54040039	0.686428	Sox2	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr9_-_110117379_110117445	0.686169	Sox2	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr16_+_20097554_20097596	0.686067	Sox2	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr2_+_37443273_37443339	0.685567	Sox2	ENSMUST00000133434.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000061179.5|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr11_+_97415527_97415538	0.683292	Sox2	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr9_-_15045378_15045502	0.677978	Sox2	ENSMUST00000164273.1|Panx1|ENSMUSG00000031934.7|pannexin 1
mm10_v2_chr18_+_24205937_24206002	0.675961	Sox2	ENSMUST00000164998.1|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr12_-_101028983_101029042	0.67533	Sox2	ENSMUST00000068411.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C 	ENSMUST00000085096.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C
mm10_v2_chr15_-_81729864_81729919	0.674843	Sox2	ENSMUST00000171115.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000170134.1|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1 	ENSMUST00000052374.5|Rangap1|ENSMUSG00000022391.9|RAN GTPase activating protein 1
mm10_v2_chrX_+_159708593_159708612	0.674136	Sox2	ENSMUST00000080394.6|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr10_+_69925484_69925532	0.67411	Sox2	ENSMUST00000182692.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092433.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_-_148287927_148287965	0.673391	Sox2	ENSMUST00000047720.8|Ptchd2|ENSMUSG00000041544.11|patched domain containing 2
mm10_v2_chr18_+_56707725_56707940	0.673304	Sox2	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr1_-_181183739_181183739	0.672807	Sox2	ENSMUST00000159290.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr13_+_49341549_49341623	0.671201	Sox2	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr11_+_83964419_83964478	0.669939	Sox2	ENSMUST00000049714.8|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000092834.5|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183714.1|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183456.1|Synrg|ENSMUSG00000034940.9|synergin, gamma
mm10_v2_chr5_+_3928033_3928178	0.668621	Sox2	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr6_-_38876163_38876234	0.667093	Sox2	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr9_+_18427543_18427543	0.665396	Sox2	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr4_-_129742275_129742312	0.665123	Sox2	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr3_-_69127098_69127113	0.663477	Sox2	ENSMUST00000029353.2|Kpna4|ENSMUSG00000027782.4|karyopherin (importin) alpha 4
mm10_v2_chr7_-_19271797_19271823	0.66014	Sox2	ENSMUST00000032561.8|Vasp|ENSMUSG00000030403.8|vasodilator-stimulated phosphoprotein
mm10_v2_chr5_+_74535535_74535558	0.65942	Sox2	ENSMUST00000121950.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr13_+_97241096_97241116	0.659385	Sox2	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chr11_+_94044194_94044238	0.65591	Sox2	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr11_-_115699307_115699324	0.652739	Sox2	ENSMUST00000106499.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr11_-_23633621_23633639	0.651317	Sox2	ENSMUST00000180260.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000141353.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000131612.1|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene 	ENSMUST00000109532.2|0610010F05Rik|ENSMUSG00000042208.9|RIKEN cDNA 0610010F05 gene
mm10_v2_chr17_+_52602700_52602717	0.650314	Sox2	ENSMUST00000039366.10|Kcnh8|ENSMUSG00000035580.10|potassium voltage-gated channel, subfamily H (eag-related), member 8
mm10_v2_chr5_-_8367982_8368107	0.647745	Sox2	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr5_-_114091358_114091404	0.645327	Sox2	ENSMUST00000150106.1|Svop|ENSMUSG00000042078.8|SV2 related protein
mm10_v2_chr17_+_84956718_84956745	0.64404	Sox2	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr2_-_156111954_156111978	0.642307	Sox2	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr12_-_83597140_83597177	0.641265	Sox2	ENSMUST00000048319.4|Zfyve1|ENSMUSG00000042628.7|zinc finger, FYVE domain containing 1
mm10_v2_chr2_-_45110241_45110265	0.639818	Sox2	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_-_41220162_41220195	0.639083	Sox2	ENSMUST00000117096.1|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr18_-_23981555_23981555	0.637265	Sox2	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr3_+_90079540_90079715	0.637116	Sox2	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr8_-_4217459_4217503	0.636407	Sox2	ENSMUST00000176227.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr16_-_89818338_89818356	0.635565	Sox2	ENSMUST00000164263.2|Tiam1|ENSMUSG00000002489.9|T cell lymphoma invasion and metastasis 1
mm10_v2_chr2_-_156111863_156111943	0.634759	Sox2	ENSMUST00000154889.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000079312.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000153634.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000133921.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000131377.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000183518.1|RP23-220D12.12|ENSMUSG00000098950.1|RNA-binding protein 12  	ENSMUST00000184265.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109607.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109608.2|Cpne1|ENSMUSG00000074643.6|copine I
mm10_v2_chr5_+_34549595_34549688	0.633756	Sox2	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr11_+_32276400_32276400	0.633521	Sox2	ENSMUST00000020531.2|Hba-x|ENSMUSG00000055609.2|hemoglobin X, alpha-like embryonic chain in Hba complex
mm10_v2_chr11_-_51606840_51606857	0.630494	Sox2	ENSMUST00000074669.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000101249.2|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B 	ENSMUST00000109103.3|Hnrnpab|ENSMUSG00000020358.11|heterogeneous nuclear ribonucleoprotein A/B
mm10_v2_chr1_-_54194048_54194048	0.630333	Sox2	ENSMUST00000120904.1|Hecw2|ENSMUSG00000042807.9|HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2
mm10_v2_chr7_+_127470354_127470371	0.630333	Sox2	ENSMUST00000106292.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr7_+_99381495_99381555	0.629831	Sox2	ENSMUST00000037528.8|Gdpd5|ENSMUSG00000035314.8|glycerophosphodiester phosphodiesterase domain containing 5
mm10_v2_chr1_-_168431502_168431513	0.629501	Sox2	ENSMUST00000064438.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr1_+_153900572_153900606	0.628757	Sox2	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr3_-_127837419_127837505	0.628579	Sox2	ENSMUST00000051737.6|Ap1ar|ENSMUSG00000074238.2|adaptor-related protein complex 1 associated regulatory protein
mm10_v2_chr19_-_24961545_24961630	0.626182	Sox2	ENSMUST00000025815.8|Cbwd1|ENSMUSG00000024878.8|COBW domain containing 1
mm10_v2_chr3_-_107931817_107931885	0.625557	Sox2	ENSMUST00000004137.4|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr13_-_59694100_59694108	0.62394	Sox2	ENSMUST00000061597.5|4921517D22Rik|ENSMUSG00000049902.5|RIKEN cDNA 4921517D22 gene
mm10_v2_chr17_-_26069409_26069550	0.623533	Sox2	ENSMUST00000120691.1|Rab11fip3|ENSMUSG00000037098.11|RAB11 family interacting protein 3 (class II)
mm10_v2_chr18_-_88927447_88927481	0.623415	Sox2	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr7_+_29307924_29308057	0.619714	Sox2	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr10_+_69925800_69925824	0.619466	Sox2	ENSMUST00000182029.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr4_-_114987220_114987256	0.618552	Sox2	ENSMUST00000030491.8|Cmpk1|ENSMUSG00000028719.8|cytidine monophosphate (UMP-CMP) kinase 1
mm10_v2_chr17_-_15375969_15375983	0.61783	Sox2	ENSMUST00000014917.7|Dll1|ENSMUSG00000014773.7|delta-like 1 (Drosophila)
mm10_v2_chr9_-_45906369_45906437	0.617555	Sox2	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr1_-_12991109_12991177	0.617527	Sox2	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr1_+_182409162_182409184	0.617386	Sox2	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr16_+_41532851_41532865	0.616237	Sox2	ENSMUST00000078873.4|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chr11_+_60699718_60699750	0.615521	Sox2	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr2_+_157560078_157560130	0.615424	Sox2	ENSMUST00000153739.2|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173595.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000109526.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173839.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173041.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000173793.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000172487.1|Nnat|ENSMUSG00000067786.10|neuronatin 	ENSMUST00000088484.5|Nnat|ENSMUSG00000067786.10|neuronatin
mm10_v2_chr2_+_147012996_147013083	0.614201	Sox2	ENSMUST00000028921.5|Xrn2|ENSMUSG00000027433.5|5'-3' exoribonuclease 2
mm10_v2_chr5_+_74535449_74535524	0.614183	Sox2	ENSMUST00000080164.5|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113536.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000122245.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000120618.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113535.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113534.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr9_+_13619990_13619990	0.613985	Sox2	ENSMUST00000159294.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr4_+_98546710_98546739	0.613859	Sox2	ENSMUST00000102792.3|Inadl|ENSMUSG00000061859.10|InaD-like (Drosophila)
mm10_v2_chr16_+_62814676_62814703	0.6135	Sox2	ENSMUST00000055557.5|Stx19|ENSMUSG00000047854.5|syntaxin 19
mm10_v2_chr11_-_98329641_98329654	0.612403	Sox2	ENSMUST00000041685.6|Neurod2|ENSMUSG00000038255.6|neurogenic differentiation 2
mm10_v2_chr3_+_53463666_53463681	0.610564	Sox2	ENSMUST00000058577.4|Proser1|ENSMUSG00000049504.11|proline and serine rich 1
mm10_v2_chr5_-_142906702_142906754	0.610332	Sox2	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr19_+_40831248_40831292	0.609964	Sox2	ENSMUST00000025983.6|Ccnj|ENSMUSG00000025010.7|cyclin J 	ENSMUST00000120057.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr14_-_62456286_62456289	0.607403	Sox2	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr10_-_94944578_94944578	0.606519	Sox2	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr18_-_23038656_23038676	0.60477	Sox2	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr1_+_66364623_66364663	0.601412	Sox2	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr15_-_73423180_73423218	0.600286	Sox2	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr19_+_6364557_6364668	0.599505	Sox2	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr11_+_59662471_59662543	0.59815	Sox2	ENSMUST00000072031.6|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000116371.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000108751.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000066330.8|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein
mm10_v2_chr10_-_81627797_81627797	0.597831	Sox2	ENSMUST00000042923.8|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr11_+_60699758_60699845	0.597376	Sox2	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr4_-_109156610_109156631	0.596729	Sox2	ENSMUST00000161363.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr2_-_79908428_79908438	0.595852	Sox2	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr2_+_163122605_163122620	0.595178	Sox2	ENSMUST00000144092.1|Gm11454|ENSMUSG00000086152.1|predicted gene 11454
mm10_v2_chr4_-_99120856_99120894	0.594116	Sox2	ENSMUST00000030286.7|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr15_+_98571004_98571026	0.593899	Sox2	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr7_-_118705708_118705786	0.593517	Sox2	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr17_-_46487641_46487682	0.590975	Sox2	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr11_-_76217490_76217664	0.590215	Sox2	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chrX_+_9272756_9272805	0.589387	Sox2	ENSMUST00000015486.6|Xk|ENSMUSG00000015342.6|Kell blood group precursor (McLeod phenotype) homolog
mm10_v2_chr12_+_76081645_76081661	0.589021	Sox2	ENSMUST00000154509.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr2_-_168767136_168767201	0.588841	Sox2	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr9_-_107872403_107872422	0.587451	Sox2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr19_+_6363719_6363810	0.585942	Sox2	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr19_+_5740885_5740904	0.580746	Sox2	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr6_-_136171722_136171849	0.580495	Sox2	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr4_+_83417715_83417758	0.579783	Sox2	ENSMUST00000030206.3|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3 	ENSMUST00000071544.4|Snapc3|ENSMUSG00000028483.7|small nuclear RNA activating complex, polypeptide 3
mm10_v2_chr2_+_32876114_32876241	0.578908	Sox2	ENSMUST00000028135.8|Fam129b|ENSMUSG00000026796.10|family with sequence similarity 129, member B
mm10_v2_chr16_+_31663841_31663912	0.577975	Sox2	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr11_+_106216926_106216968	0.577464	Sox2	ENSMUST00000021046.5|Ddx42|ENSMUSG00000020705.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm10_v2_chr9_-_66124872_66124886	0.5772	Sox2	ENSMUST00000034946.8|Snx1|ENSMUSG00000032382.8|sorting nexin 1
mm10_v2_chr7_+_126760591_126760599	0.575512	Sox2	ENSMUST00000091328.2|Mapk3|ENSMUSG00000063065.7|mitogen-activated protein kinase 3
mm10_v2_chr5_-_138171216_138171246	0.575465	Sox2	ENSMUST00000147920.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr7_+_12881165_12881204	0.573752	Sox2	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr8_-_67515606_67515606	0.571652	Sox2	ENSMUST00000032981.5|Gm9755|ENSMUSG00000030735.5|predicted pseudogene 9755
mm10_v2_chr2_-_121806988_121807018	0.568742	Sox2	ENSMUST00000110592.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr7_+_141392164_141392213	0.568016	Sox2	ENSMUST00000026576.4|Taldo1|ENSMUSG00000025503.4|transaldolase 1
mm10_v2_chr9_+_69989466_69989539	0.56799	Sox2	ENSMUST00000034754.5|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000085393.6|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2 	ENSMUST00000117450.1|Bnip2|ENSMUSG00000011958.11|BCL2/adenovirus E1B interacting protein 2
mm10_v2_chr19_-_7241216_7241226	0.567188	Sox2	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr14_+_73142591_73142723	0.56511	Sox2	ENSMUST00000170368.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr9_+_109038565_109038644	0.561384	Sox2	ENSMUST00000112059.3|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis) 	ENSMUST00000026737.5|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr8_-_40634776_40634806	0.561196	Sox2	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr14_-_34310503_34310560	0.560611	Sox2	ENSMUST00000111917.1|Fam35a|ENSMUSG00000041471.8|family with sequence similarity 35, member A
mm10_v2_chr6_-_13839916_13839942	0.557757	Sox2	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr17_+_12119274_12119348	0.557732	Sox2	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr2_-_7395879_7395912	0.557233	Sox2	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr18_+_35965036_35965087	0.55613	Sox2	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr5_-_142905928_142905978	0.554439	Sox2	ENSMUST00000106216.2|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr2_-_25983236_25983290	0.553507	Sox2	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr1_+_64690443_64690467	0.551996	Sox2	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr3_+_103058302_103058352	0.551671	Sox2	ENSMUST00000029445.6|Nras|ENSMUSG00000027852.8|neuroblastoma ras oncogene
mm10_v2_chr2_+_176831140_176831140	0.549294	Sox2	ENSMUST00000122218.2|Gm14408|ENSMUSG00000078876.4|predicted gene 14408 	ENSMUST00000126726.1|Gm14408|ENSMUSG00000078876.4|predicted gene 14408
mm10_v2_chr10_-_84533884_84533896	0.547899	Sox2	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr18_+_68300351_68300422	0.547028	Sox2	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr9_-_75409352_75409383	0.545276	Sox2	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr1_-_93101854_93101879	0.544888	Sox2	ENSMUST00000171796.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A 	ENSMUST00000171556.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr19_-_45783512_45783558	0.543072	Sox2	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chrX_-_57392962_57392988	0.542834	Sox2	ENSMUST00000114730.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr19_+_8953826_8953856	0.541782	Sox2	ENSMUST00000096239.5|Tut1|ENSMUSG00000071645.5|terminal uridylyl transferase 1, U6 snRNA-specific
mm10_v2_chr16_+_17070220_17070239	0.540776	Sox2	ENSMUST00000141959.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr4_-_151996113_151996258	0.539689	Sox2	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr7_+_126272589_126272619	0.539012	Sox2	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr17_-_25433775_25433790	0.538088	Sox2	ENSMUST00000159610.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000159048.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000078496.5|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr13_+_88821472_88821520	0.53784	Sox2	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr7_+_130692532_130692575	0.53527	Sox2	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr16_+_31664130_31664178	0.535173	Sox2	ENSMUST00000023454.5|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr5_-_142905816_142905832	0.534884	Sox2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr2_-_173276144_173276189	0.534023	Sox2	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr9_+_57825918_57825945	0.533224	Sox2	ENSMUST00000165858.1|Gm17231|ENSMUSG00000091908.1|predicted gene 17231
mm10_v2_chr5_+_33820695_33820835	0.532753	Sox2	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr11_+_3330781_3330812	0.531527	Sox2	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr3_+_40745332_40745382	0.531424	Sox2	ENSMUST00000159819.1|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr15_+_82275197_82275281	0.53142	Sox2	ENSMUST00000116423.1|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr11_-_101095367_101095439	0.529582	Sox2	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr17_-_46890405_46890405	0.528609	Sox2	ENSMUST00000086675.3|A330017A19Rik|ENSMUSG00000073388.2|RIKEN cDNA A330017A19 gene
mm10_v2_chr11_+_32533290_32533305	0.527342	Sox2	ENSMUST00000102821.3|Stk10|ENSMUSG00000020272.8|serine/threonine kinase 10
mm10_v2_chr17_-_12916345_12916408	0.525865	Sox2	ENSMUST00000079121.3|Mrpl18|ENSMUSG00000057388.3|mitochondrial ribosomal protein L18
mm10_v2_chr9_-_107710475_107710475	0.523788	Sox2	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr12_+_21111720_21111776	0.522295	Sox2	ENSMUST00000064595.8|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000101562.4|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000090834.6|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr15_-_103251465_103251705	0.521908	Sox2	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr18_-_68300194_68300228	0.521689	Sox2	ENSMUST00000152193.1|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr8_+_123332676_123332740	0.520754	Sox2	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr2_-_165884636_165884874	0.520642	Sox2	ENSMUST00000177633.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000018050.7|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000088113.4|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr17_-_34121944_34121988	0.517499	Sox2	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr4_-_116405986_116406120	0.517414	Sox2	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr5_-_149053038_149053053	0.516939	Sox2	ENSMUST00000085546.6|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr4_+_5724304_5724357	0.516878	Sox2	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr16_-_34573526_34573554	0.516183	Sox2	ENSMUST00000114961.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr10_+_69925954_69926133	0.516123	Sox2	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_-_80421847_80421876	0.515929	Sox2	ENSMUST00000156244.1|Tcf3|ENSMUSG00000020167.8|transcription factor 3
mm10_v2_chr2_-_18048784_18048822	0.515567	Sox2	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr1_-_135375233_135375245	0.515461	Sox2	ENSMUST00000041240.3|Shisa4|ENSMUSG00000041889.7|shisa homolog 4 (Xenopus laevis)
mm10_v2_chr4_-_36136463_36136463	0.51535	Sox2	ENSMUST00000098151.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr11_+_58948890_58948920	0.515169	Sox2	ENSMUST00000078267.3|Hist3h2ba|ENSMUSG00000056895.3|histone cluster 3, H2ba
mm10_v2_chr9_-_122903102_122903184	0.511731	Sox2	ENSMUST00000180877.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene 	ENSMUST00000180486.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene
mm10_v2_chr10_-_82622926_82623137	0.511351	Sox2	ENSMUST00000176200.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000183416.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene
mm10_v2_chr9_+_59617284_59617301	0.509178	Sox2	ENSMUST00000026267.8|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6 	ENSMUST00000050483.7|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6
mm10_v2_chr16_-_90284412_90284498	0.508596	Sox2	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr17_+_47505211_47505241	0.506715	Sox2	ENSMUST00000182935.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3 	ENSMUST00000182506.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3
mm10_v2_chr10_+_36974536_36974556	0.506613	Sox2	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr15_-_98871175_98871204	0.504646	Sox2	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr10_+_69925766_69925786	0.504101	Sox2	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr8_+_22757744_22757761	0.503555	Sox2	ENSMUST00000033941.5|Plat|ENSMUSG00000031538.5|plasminogen activator, tissue
mm10_v2_chr1_+_6730135_6730176	0.503431	Sox2	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr4_-_132212060_132212130	0.502458	Sox2	ENSMUST00000085181.4|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr17_+_32993123_32993201	0.5016	Sox2	ENSMUST00000087666.4|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952 	ENSMUST00000157017.1|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952
mm10_v2_chr16_-_24393588_24393697	0.50144	Sox2	ENSMUST00000181640.1|1110054M08Rik|ENSMUSG00000097867.1|RIKEN cDNA 1110054M08 gene
mm10_v2_chr4_+_6191093_6191122	0.499977	Sox2	ENSMUST00000029907.5|Ubxn2b|ENSMUSG00000028243.5|UBX domain protein 2B
mm10_v2_chr18_+_35965088_35965110	0.498946	Sox2	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr5_-_138155694_138155744	0.498738	Sox2	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr12_-_116262946_116263046	0.497676	Sox2	ENSMUST00000039349.6|Wdr60|ENSMUSG00000042050.7|WD repeat domain 60
mm10_v2_chr17_+_35001282_35001347	0.497449	Sox2	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr3_+_88716838_88716883	0.4974	Sox2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr4_-_14621669_14621786	0.497345	Sox2	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr2_+_92185467_92185494	0.49646	Sox2	ENSMUST00000111291.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr11_+_3895223_3895310	0.496252	Sox2	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr11_+_3649494_3649494	0.495962	Sox2	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr11_-_121229293_121229322	0.495453	Sox2	ENSMUST00000106115.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000038709.7|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000147490.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr11_-_115699461_115699534	0.495346	Sox2	ENSMUST00000106497.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr4_-_155863362_155863362	0.494038	Sox2	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr11_+_4883186_4883222	0.493709	Sox2	ENSMUST00000139737.1|Nipsnap1|ENSMUSG00000034285.9|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm10_v2_chr5_-_148928619_148928659	0.49305	Sox2	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr11_+_72796254_72796268	0.49092	Sox2	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr11_+_64979025_64979110	0.490743	Sox2	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr1_+_15287259_15287259	0.490209	Sox2	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr8_+_94977101_94977123	0.489691	Sox2	ENSMUST00000179619.1|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr2_+_167932327_167932379	0.489232	Sox2	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr18_+_34777008_34777075	0.488944	Sox2	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chrX_-_105929333_105929382	0.48891	Sox2	ENSMUST00000134507.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000137453.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000150914.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chrX_-_105929206_105929321	0.488651	Sox2	ENSMUST00000134381.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000154866.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr4_-_110290884_110290913	0.488283	Sox2	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr4_+_136284658_136284686	0.485852	Sox2	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chrX_-_10117597_10117709	0.483195	Sox2	ENSMUST00000115543.2|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein 	ENSMUST00000044789.3|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein 	ENSMUST00000115544.2|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein
mm10_v2_chr7_-_127615208_127615219	0.482612	Sox2	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr11_-_106579111_106579141	0.481551	Sox2	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr6_+_48613180_48613180	0.480364	Sox2	ENSMUST00000061720.4|Zfp775|ENSMUSG00000007216.4|zinc finger protein 775
mm10_v2_chr6_-_56797637_56797757	0.480012	Sox2	ENSMUST00000114323.1|Kbtbd2|ENSMUSG00000059486.5|kelch repeat and BTB (POZ) domain containing 2
mm10_v2_chr16_-_3908639_3908689	0.479156	Sox2	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr6_-_72788952_72789061	0.478453	Sox2	ENSMUST00000114053.2|Tcf7l1|ENSMUSG00000055799.7|transcription factor 7 like 1 (T cell specific, HMG box)
mm10_v2_chr7_+_79273201_79273270	0.477364	Sox2	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr1_+_87213924_87213990	0.47715	Sox2	ENSMUST00000113230.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000123735.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr3_+_88621274_88621292	0.475378	Sox2	ENSMUST00000107510.3|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr8_-_105289465_105289541	0.475221	Sox2	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chr6_+_92092369_92092433	0.475216	Sox2	ENSMUST00000113463.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr2_+_32621750_32621774	0.474895	Sox2	ENSMUST00000113278.2|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr13_+_4191163_4191200	0.473302	Sox2	ENSMUST00000021634.2|Akr1c13|ENSMUSG00000021213.5|aldo-keto reductase family 1, member C13
mm10_v2_chr19_-_46039621_46039662	0.471733	Sox2	ENSMUST00000056931.7|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr5_-_86676346_86676369	0.469374	Sox2	ENSMUST00000038448.6|Tmprss11bnl|ENSMUSG00000035861.6|transmembrane protease, serine 11b N terminal like
mm10_v2_chr2_+_32151074_32151262	0.46931	Sox2	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr3_-_88762244_88762384	0.469297	Sox2	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr11_-_98729374_98729435	0.469083	Sox2	ENSMUST00000126565.1|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000100500.2|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000017354.6|Med24|ENSMUSG00000017210.8|mediator complex subunit 24
mm10_v2_chr11_+_72796164_72796246	0.469064	Sox2	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr3_+_88716884_88716906	0.46857	Sox2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr11_-_61175020_61175060	0.466839	Sox2	ENSMUST00000041683.8|Usp22|ENSMUSG00000042506.9|ubiquitin specific peptidase 22
mm10_v2_chr3_-_36613285_36613367	0.466053	Sox2	ENSMUST00000108155.1|Bbs7|ENSMUSG00000037325.4|Bardet-Biedl syndrome 7 (human)
mm10_v2_chr17_+_74338943_74338987	0.462691	Sox2	ENSMUST00000024869.6|Spast|ENSMUSG00000024068.6|spastin
mm10_v2_chr11_+_121237216_121237289	0.462231	Sox2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr14_+_26638237_26638347	0.462151	Sox2	ENSMUST00000112318.3|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr14_+_69029289_69029414	0.459992	Sox2	ENSMUST00000014957.8|Stc1|ENSMUSG00000014813.8|stanniocalcin 1
mm10_v2_chr8_-_123515333_123515437	0.45996	Sox2	ENSMUST00000177240.1|Dbndd1|ENSMUSG00000031970.10|dysbindin (dystrobrevin binding protein 1) domain containing 1
mm10_v2_chr1_-_37536232_37536236	0.457567	Sox2	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr7_+_4925802_4925868	0.454275	Sox2	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr8_+_124793013_124793056	0.45259	Sox2	ENSMUST00000167588.1|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr14_-_56571830_56571860	0.451528	Sox2	ENSMUST00000065302.7|Cenpj|ENSMUSG00000064128.6|centromere protein J
mm10_v2_chr5_-_140649018_140649052	0.451113	Sox2	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr11_+_97450136_97450180	0.451005	Sox2	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chrX_+_38189780_38189826	0.44895	Sox2	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr4_-_44167905_44167976	0.448318	Sox2	ENSMUST00000102934.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr5_-_114380459_114380487	0.447184	Sox2	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr7_-_111082997_111083037	0.446418	Sox2	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr8_+_87472838_87472849	0.44624	Sox2	ENSMUST00000180806.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr4_-_44167580_44167608	0.444763	Sox2	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr3_+_88532314_88532396	0.443745	Sox2	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr19_+_26753588_26753603	0.44328	Sox2	ENSMUST00000177116.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr11_+_119022962_119023104	0.440431	Sox2	ENSMUST00000026662.7|Cbx2|ENSMUSG00000025577.7|chromobox 2
mm10_v2_chr5_+_117976761_117976803	0.440377	Sox2	ENSMUST00000035579.6|Fbxo21|ENSMUSG00000032898.6|F-box protein 21
mm10_v2_chrX_-_57393020_57393040	0.439804	Sox2	ENSMUST00000143310.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000098470.2|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome 	ENSMUST00000114726.1|Rbmx|ENSMUSG00000031134.10|RNA binding motif protein, X chromosome
mm10_v2_chr6_-_50261743_50261788	0.439793	Sox2	ENSMUST00000101405.3|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000165099.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human) 	ENSMUST00000170142.1|Dfna5|ENSMUSG00000029821.9|deafness, autosomal dominant 5 (human)
mm10_v2_chr7_-_78578308_78578408	0.436344	Sox2	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr17_+_12916329_12916447	0.431886	Sox2	ENSMUST00000089024.6|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000151287.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1 	ENSMUST00000143961.1|Tcp1|ENSMUSG00000068039.6|t-complex protein 1
mm10_v2_chr2_+_156721340_156721492	0.431389	Sox2	ENSMUST00000099145.5|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr4_+_9269285_9269335	0.431239	Sox2	ENSMUST00000038841.7|Clvs1|ENSMUSG00000041216.9|clavesin 1
mm10_v2_chr19_+_6363671_6363704	0.430679	Sox2	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr11_-_68957445_68957485	0.430623	Sox2	ENSMUST00000108671.1|Arhgef15|ENSMUSG00000052921.7|Rho guanine nucleotide exchange factor (GEF) 15
mm10_v2_chr8_+_22411340_22411460	0.42994	Sox2	ENSMUST00000033934.3|Mrps31|ENSMUSG00000031533.3|mitochondrial ribosomal protein S31
mm10_v2_chr1_-_36557517_36557561	0.428217	Sox2	ENSMUST00000114990.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000128104.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000027295.4|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr2_-_131352857_131352889	0.427812	Sox2	ENSMUST00000059372.4|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chr4_+_101647712_101647736	0.427655	Sox2	ENSMUST00000030254.8|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr11_-_99230998_99231019	0.427185	Sox2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr5_+_34549568_34549581	0.42647	Sox2	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr12_+_52699297_52699411	0.42645	Sox2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr4_-_134012381_134012404	0.426315	Sox2	ENSMUST00000176113.1|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr9_+_50768228_50768271	0.425205	Sox2	ENSMUST00000042391.6|Fdxacb1|ENSMUSG00000037845.8|ferredoxin-fold anticodon binding domain containing 1
mm10_v2_chr5_-_142817654_142817668	0.424439	Sox2	ENSMUST00000151477.1|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr7_+_119900099_119900108	0.420132	Sox2	ENSMUST00000106516.1|Lyrm1|ENSMUSG00000030922.5|LYR motif containing 1
mm10_v2_chr9_+_107569112_107569135	0.419683	Sox2	ENSMUST00000010191.7|Hyal2|ENSMUSG00000010047.7|hyaluronoglucosaminidase 2
mm10_v2_chr9_-_107872821_107872844	0.419055	Sox2	ENSMUST00000183032.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr11_+_94044241_94044273	0.418939	Sox2	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr11_+_98203314_98203335	0.417917	Sox2	ENSMUST00000003203.7|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12 	ENSMUST00000107538.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr9_-_65021645_65021717	0.417673	Sox2	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr8_+_31111816_31111891	0.417528	Sox2	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr8_-_47713920_47713938	0.41659	Sox2	ENSMUST00000038738.5|Cdkn2aip|ENSMUSG00000038069.5|CDKN2A interacting protein
mm10_v2_chr2_+_30807826_30807999	0.416176	Sox2	ENSMUST00000041830.3|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1 	ENSMUST00000152374.1|Ntmt1|ENSMUSG00000026857.3|N-terminal Xaa-Pro-Lys N-methyltransferase 1
mm10_v2_chr17_+_67697253_67697276	0.415053	Sox2	ENSMUST00000035471.7|Lama1|ENSMUSG00000032796.7|laminin, alpha 1
mm10_v2_chr2_+_27009936_27010082	0.415024	Sox2	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr10_+_127739516_127739592	0.414046	Sox2	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr11_+_24076529_24076563	0.413697	Sox2	ENSMUST00000148087.1|Gm12063|ENSMUSG00000085167.1|predicted gene 12063
mm10_v2_chr11_-_78165521_78165589	0.413417	Sox2	ENSMUST00000017530.3|Traf4|ENSMUSG00000017386.4|TNF receptor associated factor 4
mm10_v2_chr9_-_59486323_59486415	0.411804	Sox2	ENSMUST00000165322.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr14_+_26638074_26638151	0.411606	Sox2	ENSMUST00000022429.2|Arf4|ENSMUSG00000021877.5|ADP-ribosylation factor 4
mm10_v2_chr2_+_156721037_156721062	0.411234	Sox2	ENSMUST00000109566.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000146412.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000177013.1|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000171030.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr17_+_75005523_75005568	0.410904	Sox2	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chrX_+_13071470_13071499	0.40948	Sox2	ENSMUST00000169594.2|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr16_+_18127607_18127649	0.407502	Sox2	ENSMUST00000059589.5|Rtn4r|ENSMUSG00000043811.5|reticulon 4 receptor
mm10_v2_chr4_+_101647763_101647797	0.407442	Sox2	ENSMUST00000106927.1|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr1_+_42952872_42952983	0.404326	Sox2	ENSMUST00000179766.1|Gpr45|ENSMUSG00000041907.8|G protein-coupled receptor 45
mm10_v2_chr2_+_90987603_90987746	0.403654	Sox2	ENSMUST00000111452.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111455.2|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr12_+_84996487_84996496	0.403536	Sox2	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chrX_+_159459125_159459165	0.403451	Sox2	ENSMUST00000043151.5|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000112470.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2 	ENSMUST00000156172.1|Map7d2|ENSMUSG00000041020.8|MAP7 domain containing 2
mm10_v2_chr18_+_67562387_67562387	0.402519	Sox2	ENSMUST00000163749.1|Gm17669|ENSMUSG00000091695.1|predicted gene, 17669
mm10_v2_chr16_-_52296924_52296924	0.400388	Sox2	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr16_+_18348181_18348274	0.399409	Sox2	ENSMUST00000115614.2|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000115613.1|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome 	ENSMUST00000090103.3|Arvcf|ENSMUSG00000000325.9|armadillo repeat gene deleted in velo-cardio-facial syndrome
mm10_v2_chr6_+_125096145_125096162	0.398756	Sox2	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr16_-_90284300_90284348	0.39683	Sox2	ENSMUST00000163419.1|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr8_-_4216912_4217003	0.396307	Sox2	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr16_-_23225334_23225368	0.39619	Sox2	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr4_+_40723084_40723117	0.39549	Sox2	ENSMUST00000149794.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr15_+_82274935_82275034	0.39499	Sox2	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr5_+_92137896_92137939	0.394724	Sox2	ENSMUST00000031355.6|Uso1|ENSMUSG00000029407.7|USO1 vesicle docking factor
mm10_v2_chr14_+_14703025_14703073	0.39423	Sox2	ENSMUST00000057015.6|Slc4a7|ENSMUSG00000021733.9|solute carrier family 4, sodium bicarbonate cotransporter, member 7
mm10_v2_chr10_+_82859198_82859217	0.394123	Sox2	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr19_+_10688744_10688818	0.393409	Sox2	ENSMUST00000087951.5|Vps37c|ENSMUSG00000048832.8|vacuolar protein sorting 37C (yeast)
mm10_v2_chr14_-_33447142_33447179	0.393394	Sox2	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr19_+_5041337_5041416	0.392551	Sox2	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr14_+_73237891_73238007	0.392223	Sox2	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr19_+_8898090_8898122	0.39188	Sox2	ENSMUST00000096246.3|Ganab|ENSMUSG00000071650.5|alpha glucosidase 2 alpha neutral subunit
mm10_v2_chr13_+_83573577_83573607	0.391259	Sox2	ENSMUST00000185052.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr17_+_8182247_8182247	0.39118	Sox2	ENSMUST00000161898.1|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr5_-_135934590_135934613	0.390691	Sox2	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr7_-_133122615_133122762	0.389579	Sox2	ENSMUST00000167218.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr12_+_80790532_80790574	0.389483	Sox2	ENSMUST00000068519.5|4933426M11Rik|ENSMUSG00000021133.8|RIKEN cDNA 4933426M11 gene
mm10_v2_chr9_-_107872687_107872747	0.38896	Sox2	ENSMUST00000035201.6|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr9_+_59291565_59291577	0.387947	Sox2	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr7_-_128740471_128740525	0.387539	Sox2	ENSMUST00000119081.1|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein 	ENSMUST00000057557.7|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein
mm10_v2_chr14_-_5961745_5961745	0.387421	Sox2	ENSMUST00000163885.1|Gm3248|ENSMUSG00000091275.1|predicted gene 3248
mm10_v2_chr13_+_56703504_56703668	0.387162	Sox2	ENSMUST00000109874.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr4_-_12087912_12088011	0.387097	Sox2	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chrX_+_101429555_101429708	0.3843	Sox2	ENSMUST00000033673.6|Nono|ENSMUSG00000031311.11|non-POU-domain-containing, octamer binding protein
mm10_v2_chr17_-_70853482_70853546	0.38422	Sox2	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr16_+_11405648_11405713	0.383773	Sox2	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr14_+_49172202_49172254	0.382899	Sox2	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr19_+_30030589_30030634	0.382641	Sox2	ENSMUST00000112552.1|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr6_-_47813512_47813528	0.382507	Sox2	ENSMUST00000077290.7|Pdia4|ENSMUSG00000025823.8|protein disulfide isomerase associated 4
mm10_v2_chr7_+_80860909_80860972	0.381889	Sox2	ENSMUST00000132163.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2 	ENSMUST00000147125.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2
mm10_v2_chr14_-_7174533_7174533	0.380381	Sox2	ENSMUST00000172431.1|Gm3512|ENSMUSG00000090363.2|predicted gene 3512
mm10_v2_chr14_+_31019159_31019178	0.380107	Sox2	ENSMUST00000112094.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000144009.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr3_-_122619442_122619553	0.379786	Sox2	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr2_-_132578155_132578233	0.379171	Sox2	ENSMUST00000110136.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000124107.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 	ENSMUST00000060955.5|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr11_+_6546899_6546941	0.378753	Sox2	ENSMUST00000159007.1|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr8_+_61224162_61224174	0.378363	Sox2	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr10_-_81627257_81627320	0.377812	Sox2	ENSMUST00000143424.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6 	ENSMUST00000119324.1|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr2_+_156721069_156721084	0.377192	Sox2	ENSMUST00000000094.7|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr15_-_75905349_75905388	0.376883	Sox2	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr11_-_121229095_121229292	0.376318	Sox2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr19_+_44293676_44293676	0.375989	Sox2	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr7_-_130519961_130520004	0.375391	Sox2	ENSMUST00000178534.1|Ate1|ENSMUSG00000030850.9|arginyltransferase 1 	ENSMUST00000094017.3|Ate1|ENSMUSG00000030850.9|arginyltransferase 1
mm10_v2_chr3_+_27317028_27317084	0.374228	Sox2	ENSMUST00000046383.5|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10 	ENSMUST00000174840.1|Tnfsf10|ENSMUSG00000039304.5|tumor necrosis factor (ligand) superfamily, member 10
mm10_v2_chr11_+_80477015_80477085	0.373598	Sox2	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr12_-_110978981_110979040	0.372378	Sox2	ENSMUST00000135131.1|Ankrd9|ENSMUSG00000037904.8|ankyrin repeat domain 9 	ENSMUST00000043459.6|Ankrd9|ENSMUSG00000037904.8|ankyrin repeat domain 9 	ENSMUST00000128353.1|Ankrd9|ENSMUSG00000037904.8|ankyrin repeat domain 9
mm10_v2_chr4_+_34550937_34550937	0.37208	Sox2	ENSMUST00000084299.5|Akirin2|ENSMUSG00000028291.7|akirin 2
mm10_v2_chr9_+_4383535_4383535	0.371811	Sox2	ENSMUST00000047173.9|Msantd4|ENSMUSG00000041124.10|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
mm10_v2_chr1_+_82839449_82839518	0.371428	Sox2	ENSMUST00000113444.1|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1 	ENSMUST00000063380.4|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1
mm10_v2_chr10_-_84533968_84534036	0.371337	Sox2	ENSMUST00000167671.1|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr10_-_117063764_117063814	0.37121	Sox2	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr2_+_164685080_164685152	0.369391	Sox2	ENSMUST00000088260.1|Wfdc13|ENSMUSG00000067704.1|WAP four-disulfide core domain 13
mm10_v2_chr1_+_175632169_175632185	0.369288	Sox2	ENSMUST00000097458.3|Kmo|ENSMUSG00000039783.9|kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
mm10_v2_chr4_-_150652097_150652181	0.369264	Sox2	ENSMUST00000117997.1|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1 	ENSMUST00000037827.3|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1
mm10_v2_chr7_-_127393604_127393663	0.368339	Sox2	ENSMUST00000165495.1|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene 	ENSMUST00000106303.2|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene 	ENSMUST00000074249.6|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene
mm10_v2_chr14_-_54577578_54577661	0.367362	Sox2	ENSMUST00000054487.8|Ajuba|ENSMUSG00000022178.10|ajuba LIM protein
mm10_v2_chr16_+_13986596_13986674	0.366507	Sox2	ENSMUST00000056521.5|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000118412.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000131608.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene
mm10_v2_chr2_+_92184106_92184310	0.366296	Sox2	ENSMUST00000111294.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111293.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162146.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000111292.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A 	ENSMUST00000162497.1|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr14_+_101840602_101840677	0.36565	Sox2	ENSMUST00000159314.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr12_-_40248073_40248086	0.364538	Sox2	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr8_+_94810446_94810461	0.363449	Sox2	ENSMUST00000034232.1|Ccl17|ENSMUSG00000031780.1|chemokine (C-C motif) ligand 17
mm10_v2_chr5_-_149636331_149636376	0.361595	Sox2	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr7_+_24134148_24134184	0.361587	Sox2	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr16_+_31663935_31664039	0.360582	Sox2	ENSMUST00000100001.3|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila) 	ENSMUST00000064477.7|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr16_-_97851796_97851853	0.360242	Sox2	ENSMUST00000121584.1|Prdm15|ENSMUSG00000014039.11|PR domain containing 15
mm10_v2_chr2_-_79908389_79908403	0.358463	Sox2	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr14_-_55092277_55092324	0.356972	Sox2	ENSMUST00000036328.8|Zfhx2|ENSMUSG00000040721.8|zinc finger homeobox 2
mm10_v2_chr8_+_33732049_33732137	0.356787	Sox2	ENSMUST00000167264.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr16_+_24393350_24393428	0.355867	Sox2	ENSMUST00000038053.6|Lpp|ENSMUSG00000033306.8|LIM domain containing preferred translocation partner in lipoma
mm10_v2_chr8_+_122376609_122376652	0.355118	Sox2	ENSMUST00000017622.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000093073.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000176699.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr11_-_76763550_76763582	0.354861	Sox2	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr4_+_135855707_135855747	0.35311	Sox2	ENSMUST00000105853.3|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000097844.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000102544.2|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10 	ENSMUST00000126641.1|Srsf10|ENSMUSG00000028676.11|serine/arginine-rich splicing factor 10
mm10_v2_chr11_+_80383309_80383336	0.35135	Sox2	ENSMUST00000108216.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr2_-_6721606_6721629	0.351329	Sox2	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr9_-_44721383_44721484	0.350783	Sox2	ENSMUST00000148929.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000123406.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr14_+_52197502_52197518	0.350598	Sox2	ENSMUST00000180857.1|Gm26590|ENSMUSG00000097533.1|predicted gene, 26590
mm10_v2_chr1_+_180330470_180330493	0.350379	Sox2	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chrX_-_53370470_53370502	0.350025	Sox2	ENSMUST00000096447.2|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1 	ENSMUST00000023836.3|Mospd1|ENSMUSG00000023074.5|motile sperm domain containing 1
mm10_v2_chr10_+_75060885_75060901	0.346574	Sox2	ENSMUST00000164107.1|Bcr|ENSMUSG00000009681.9|breakpoint cluster region
mm10_v2_chr5_-_52190484_52190524	0.346341	Sox2	ENSMUST00000031061.7|Dhx15|ENSMUSG00000029169.7|DEAH (Asp-Glu-Ala-His) box polypeptide 15
mm10_v2_chr15_-_96699698_96699717	0.346097	Sox2	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr2_+_181763315_181763335	0.345849	Sox2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_-_142817387_142817420	0.343431	Sox2	ENSMUST00000036253.6|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr5_+_138085083_138085147	0.34166	Sox2	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr12_+_40446050_40446099	0.34136	Sox2	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr13_+_88821606_88821642	0.339952	Sox2	ENSMUST00000043111.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr12_+_71309876_71309984	0.339344	Sox2	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr11_-_50292302_50292363	0.338123	Sox2	ENSMUST00000059458.4|Maml1|ENSMUSG00000050567.10|mastermind like 1 (Drosophila)
mm10_v2_chr9_-_59486610_59486621	0.337034	Sox2	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr3_+_88142536_88142572	0.335521	Sox2	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr9_-_65827544_65827576	0.334926	Sox2	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr12_-_14152038_14152069	0.33295	Sox2	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr3_+_145987835_145987901	0.331581	Sox2	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr4_+_40722912_40723001	0.331345	Sox2	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr4_-_126468580_126468653	0.331338	Sox2	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr11_+_98203059_98203059	0.331206	Sox2	ENSMUST00000107539.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr19_-_5802640_5802675	0.330876	Sox2	ENSMUST00000173523.1|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 	ENSMUST00000173499.1|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) 	ENSMUST00000172812.2|Malat1|ENSMUSG00000092341.2|metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
mm10_v2_chr11_-_76571527_76571558	0.329637	Sox2	ENSMUST00000072740.6|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr11_-_120990871_120991037	0.328771	Sox2	ENSMUST00000154483.1|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chrX_+_7899350_7899362	0.32777	Sox2	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chr12_-_83921899_83921934	0.327703	Sox2	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr8_+_62951361_62951498	0.326786	Sox2	ENSMUST00000119068.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr10_-_62110945_62111060	0.326487	Sox2	ENSMUST00000142821.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000124615.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000064050.4|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000125704.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene 	ENSMUST00000142796.1|2010107G23Rik|ENSMUSG00000020083.7|RIKEN cDNA 2010107G23 gene
mm10_v2_chr15_+_92597104_92597121	0.325206	Sox2	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr2_-_63184170_63184195	0.3251	Sox2	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr17_+_69383768_69383840	0.321063	Sox2	ENSMUST00000112676.2|Zbtb14|ENSMUSG00000049672.8|zinc finger and BTB domain containing 14
mm10_v2_chr5_-_110387090_110387154	0.321055	Sox2	ENSMUST00000056124.6|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr17_+_53479212_53479237	0.321005	Sox2	ENSMUST00000017975.5|Rab5a|ENSMUSG00000017831.7|RAB5A, member RAS oncogene family
mm10_v2_chr8_+_33731867_33731946	0.320812	Sox2	ENSMUST00000170705.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr6_+_127887582_127887639	0.320451	Sox2	ENSMUST00000032501.4|Tspan11|ENSMUSG00000030351.4|tetraspanin 11
mm10_v2_chr4_+_43641262_43641284	0.319751	Sox2	ENSMUST00000123351.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2 	ENSMUST00000128549.1|Npr2|ENSMUSG00000028469.9|natriuretic peptide receptor 2
mm10_v2_chr12_-_108835845_108835893	0.318152	Sox2	ENSMUST00000021693.3|Slc25a29|ENSMUSG00000021265.3|solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29
mm10_v2_chr2_+_128967383_128967443	0.316964	Sox2	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr1_-_34843050_34843065	0.316585	Sox2	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr18_+_23753708_23753725	0.314705	Sox2	ENSMUST00000115830.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr2_+_155382186_155382274	0.314338	Sox2	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr18_+_35118880_35118903	0.313789	Sox2	ENSMUST00000042345.6|Ctnna1|ENSMUSG00000037815.6|catenin (cadherin associated protein), alpha 1
mm10_v2_chr7_-_18432033_18432065	0.313266	Sox2	ENSMUST00000019291.6|Psg28|ENSMUSG00000030373.6|pregnancy-specific glycoprotein 28
mm10_v2_chr19_-_37330613_37330613	0.311609	Sox2	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr11_-_70220969_70221027	0.310531	Sox2	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr10_+_94575257_94575295	0.30812	Sox2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr8_-_3467617_3467680	0.307652	Sox2	ENSMUST00000111081.3|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma 	ENSMUST00000118194.1|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma 	ENSMUST00000004686.6|Pex11g|ENSMUSG00000069633.6|peroxisomal biogenesis factor 11 gamma
mm10_v2_chr1_+_87404916_87404964	0.306723	Sox2	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr7_+_144175513_144175529	0.302804	Sox2	ENSMUST00000105900.1|Shank2|ENSMUSG00000037541.13|SH3/ankyrin domain gene 2
mm10_v2_chr8_+_33732237_33732339	0.302561	Sox2	ENSMUST00000171010.1|Gtf2e2|ENSMUSG00000031585.7|general transcription factor II E, polypeptide 2 (beta subunit)
mm10_v2_chr1_-_136346074_136346145	0.301729	Sox2	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr9_-_51963533_51963563	0.301698	Sox2	ENSMUST00000034552.6|Fdx1|ENSMUSG00000032051.8|ferredoxin 1
mm10_v2_chr5_+_148265307_148265345	0.301313	Sox2	ENSMUST00000110514.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr2_-_165034821_165034867	0.300237	Sox2	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr1_-_139377094_139377110	0.299405	Sox2	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr11_+_105181527_105181598	0.299132	Sox2	ENSMUST00000106941.2|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis)
mm10_v2_chr17_-_35909626_35909700	0.296643	Sox2	ENSMUST00000141132.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr18_-_88894203_88894216	0.294862	Sox2	ENSMUST00000123826.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr10_+_94550852_94550876	0.294281	Sox2	ENSMUST00000148910.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3 	ENSMUST00000117460.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr18_+_37755718_37755773	0.293641	Sox2	ENSMUST00000061279.7|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr18_+_82475133_82475162	0.291637	Sox2	ENSMUST00000091789.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114676.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000047865.7|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr10_-_116473418_116473514	0.291604	Sox2	ENSMUST00000087965.4|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4 	ENSMUST00000164271.1|Kcnmb4|ENSMUSG00000054934.4|potassium large conductance calcium-activated channel, subfamily M, beta member 4
mm10_v2_chr1_+_81077274_81077327	0.289874	Sox2	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr5_-_98030727_98030765	0.288653	Sox2	ENSMUST00000031281.9|Antxr2|ENSMUSG00000029338.9|anthrax toxin receptor 2
mm10_v2_chr9_+_55150050_55150083	0.287505	Sox2	ENSMUST00000122441.1|Ube2q2|ENSMUSG00000032307.10|ubiquitin-conjugating enzyme E2Q (putative) 2
mm10_v2_chr5_+_130187158_130187166	0.286806	Sox2	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr18_-_16809233_16809324	0.28657	Sox2	ENSMUST00000025166.7|Cdh2|ENSMUSG00000024304.8|cadherin 2
mm10_v2_chr18_+_36760214_36760292	0.285656	Sox2	ENSMUST00000049323.7|Wdr55|ENSMUSG00000042660.7|WD repeat domain 55
mm10_v2_chr4_-_136602641_136602760	0.285424	Sox2	ENSMUST00000105847.1|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A 	ENSMUST00000116273.2|Kdm1a|ENSMUSG00000036940.9|lysine (K)-specific demethylase 1A
mm10_v2_chr5_+_148265265_148265305	0.285326	Sox2	ENSMUST00000071878.5|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr7_-_127615226_127615272	0.285141	Sox2	ENSMUST00000084564.3|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr14_-_52197216_52197267	0.285063	Sox2	ENSMUST00000046709.7|Supt16|ENSMUSG00000035726.7|suppressor of Ty 16
mm10_v2_chr12_-_10900296_10900318	0.28443	Sox2	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr1_-_139377041_139377078	0.284156	Sox2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr1_-_173367638_173367695	0.282205	Sox2	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr7_-_115846080_115846112	0.281715	Sox2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr11_+_75733037_75733148	0.279993	Sox2	ENSMUST00000131398.1|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr5_-_30105359_30105359	0.278881	Sox2	ENSMUST00000127749.3|3110082J24Rik|ENSMUSG00000086815.3|RIKEN cDNA 3110082J24 gene
mm10_v2_chr14_-_54781886_54781925	0.278821	Sox2	ENSMUST00000022787.6|Slc7a8|ENSMUSG00000022180.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm10_v2_chr4_-_107253513_107253532	0.277681	Sox2	ENSMUST00000030360.4|Lrrc42|ENSMUSG00000028617.4|leucine rich repeat containing 42
mm10_v2_chr18_+_34624621_34624629	0.276705	Sox2	ENSMUST00000167161.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr15_-_84557776_84557875	0.275821	Sox2	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr1_-_160212864_160212892	0.275797	Sox2	ENSMUST00000014370.5|Cacybp|ENSMUSG00000014226.5|calcyclin binding protein
mm10_v2_chr9_+_96259246_96259261	0.274943	Sox2	ENSMUST00000179065.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000165768.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr10_-_57532416_57532487	0.27209	Sox2	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr2_+_156721009_156721031	0.271832	Sox2	ENSMUST00000131157.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr11_-_116168138_116168205	0.271451	Sox2	ENSMUST00000139020.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000103031.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000124828.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1
mm10_v2_chr15_+_10952332_10952364	0.271301	Sox2	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr1_+_155158703_155158776	0.271219	Sox2	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr17_-_48409729_48409906	0.27065	Sox2	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr16_-_38522662_38522683	0.270491	Sox2	ENSMUST00000002925.5|Timmdc1|ENSMUSG00000002846.9|translocase of inner mitochondrial membrane domain containing 1
mm10_v2_chr8_+_92357787_92357801	0.270197	Sox2	ENSMUST00000034184.10|Irx5|ENSMUSG00000031737.10|Iroquois related homeobox 5 (Drosophila)
mm10_v2_chr7_-_143460989_143461050	0.27012	Sox2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr5_+_143817786_143817818	0.268852	Sox2	ENSMUST00000100487.4|Eif2ak1|ENSMUSG00000029613.9|eukaryotic translation initiation factor 2 alpha kinase 1
mm10_v2_chr5_+_30013141_30013161	0.268451	Sox2	ENSMUST00000026845.7|Il6|ENSMUSG00000025746.7|interleukin 6
mm10_v2_chr8_-_33747724_33747781	0.267991	Sox2	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr4_+_136284708_136284775	0.264703	Sox2	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr2_+_18055203_18055237	0.263972	Sox2	ENSMUST00000028076.8|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr17_+_53566971_53567023	0.263677	Sox2	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr11_+_104231573_104231584	0.262613	Sox2	ENSMUST00000132977.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000132245.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000100347.4|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr18_-_46212595_46212634	0.261567	Sox2	ENSMUST00000037011.4|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr17_+_35135695_35135781	0.261209	Sox2	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr17_-_35910032_35910076	0.260294	Sox2	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr5_-_123684289_123684379	0.260088	Sox2	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr17_+_47505149_47505164	0.259695	Sox2	ENSMUST00000183177.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3 	ENSMUST00000182848.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3
mm10_v2_chr17_-_32284088_32284123	0.259662	Sox2	ENSMUST00000119123.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000003726.8|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000121285.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000120276.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000114475.2|Brd4|ENSMUSG00000024002.10|bromodomain containing 4
mm10_v2_chr5_+_114568016_114568016	0.259586	Sox2	ENSMUST00000043650.7|Fam222a|ENSMUSG00000041930.7|family with sequence similarity 222, member A
mm10_v2_chr9_+_108392820_108392843	0.259246	Sox2	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr2_-_132578244_132578255	0.258926	Sox2	ENSMUST00000110142.1|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr11_+_94044331_94044365	0.258923	Sox2	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr2_-_37443096_37443178	0.25634	Sox2	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr6_+_100833606_100833663	0.255652	Sox2	ENSMUST00000063854.4|Ppp4r2|ENSMUSG00000052144.6|protein phosphatase 4, regulatory subunit 2
mm10_v2_chr9_+_69397933_69397972	0.255403	Sox2	ENSMUST00000117610.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000145538.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000117246.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chr11_+_32455362_32455438	0.254893	Sox2	ENSMUST00000051053.4|Ubtd2|ENSMUSG00000044949.4|ubiquitin domain containing 2
mm10_v2_chr5_-_134552414_134552444	0.252384	Sox2	ENSMUST00000100647.2|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2 	ENSMUST00000036999.6|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2
mm10_v2_chrX_+_56317608_56317666	0.250801	Sox2	ENSMUST00000151426.1|1600025M17Rik|ENSMUSG00000085114.1|RIKEN cDNA 1600025M17 gene 	ENSMUST00000138262.1|1600025M17Rik|ENSMUSG00000085114.1|RIKEN cDNA 1600025M17 gene
mm10_v2_chr7_-_142095266_142095306	0.250105	Sox2	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr3_-_96058446_96058466	0.249562	Sox2	ENSMUST00000015891.5|Vps45|ENSMUSG00000015747.5|vacuolar protein sorting 45 (yeast)
mm10_v2_chr1_+_135232045_135232110	0.249125	Sox2	ENSMUST00000110798.3|Gm4204|ENSMUSG00000079139.3|predicted gene 4204
mm10_v2_chr19_-_4943049_4943127	0.248127	Sox2	ENSMUST00000133254.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000120475.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000025834.7|Peli3|ENSMUSG00000024901.8|pellino 3
mm10_v2_chr4_-_132345715_132345747	0.247416	Sox2	ENSMUST00000084250.4|Rcc1|ENSMUSG00000028896.7|regulator of chromosome condensation 1
mm10_v2_chr5_+_148265202_148265263	0.247325	Sox2	ENSMUST00000110515.2|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr10_+_17796256_17796339	0.246855	Sox2	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr8_+_87472805_87472822	0.246048	Sox2	ENSMUST00000180700.2|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000182174.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694 	ENSMUST00000181159.1|Gm2694|ENSMUSG00000097248.2|predicted gene 2694
mm10_v2_chr10_+_11609256_11609269	0.243005	Sox2	ENSMUST00000052902.7|Gm9797|ENSMUSG00000045455.7|predicted pseudogene 9797
mm10_v2_chr2_-_121807024_121807087	0.242893	Sox2	ENSMUST00000138157.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr11_+_5788480_5788560	0.242078	Sox2	ENSMUST00000109845.1|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000020769.7|Dbnl|ENSMUSG00000020476.8|drebrin-like 	ENSMUST00000102928.4|Dbnl|ENSMUSG00000020476.8|drebrin-like
mm10_v2_chr6_-_86733268_86733394	0.241204	Sox2	ENSMUST00000001185.7|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr4_-_11254248_11254266	0.239911	Sox2	ENSMUST00000044616.3|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108319.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8 	ENSMUST00000108318.2|Ints8|ENSMUSG00000040738.4|integrator complex subunit 8
mm10_v2_chr13_-_17944151_17944239	0.23811	Sox2	ENSMUST00000009003.7|Rala|ENSMUSG00000008859.7|v-ral simian leukemia viral oncogene homolog A (ras related)
mm10_v2_chr13_-_75943812_75943950	0.236509	Sox2	ENSMUST00000022078.5|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3 	ENSMUST00000109606.1|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3
mm10_v2_chr19_-_10869757_10869940	0.236167	Sox2	ENSMUST00000120524.1|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A 	ENSMUST00000025645.7|Tmem132a|ENSMUSG00000024736.8|transmembrane protein 132A
mm10_v2_chr2_+_180581220_180581304	0.235971	Sox2	ENSMUST00000169630.1|Mrgbp|ENSMUSG00000027569.9|MRG/MORF4L binding protein
mm10_v2_chr11_+_20631956_20632006	0.235398	Sox2	ENSMUST00000109586.2|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr17_+_47505043_47505066	0.234631	Sox2	ENSMUST00000182129.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3 	ENSMUST00000171031.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3
mm10_v2_chr10_+_127063527_127063538	0.234405	Sox2	ENSMUST00000006911.5|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr7_-_123369870_123369920	0.234386	Sox2	ENSMUST00000106442.2|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000098060.3|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17 	ENSMUST00000167309.1|Arhgap17|ENSMUSG00000030766.9|Rho GTPase activating protein 17
mm10_v2_chr7_+_28179469_28179535	0.232531	Sox2	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr11_+_54303798_54303844	0.231876	Sox2	ENSMUST00000093106.5|Acsl6|ENSMUSG00000020333.11|acyl-CoA synthetase long-chain family member 6
mm10_v2_chr2_-_132578128_132578153	0.224906	Sox2	ENSMUST00000028822.7|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr10_+_26229707_26229763	0.224606	Sox2	ENSMUST00000060716.5|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3 	ENSMUST00000164660.1|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3
mm10_v2_chr12_-_80436571_80436603	0.222722	Sox2	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr1_-_5070281_5070288	0.221612	Sox2	ENSMUST00000147158.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20 	ENSMUST00000118000.1|Rgs20|ENSMUSG00000002459.11|regulator of G-protein signaling 20
mm10_v2_chr1_+_180641330_180641374	0.221233	Sox2	ENSMUST00000085804.5|Lin9|ENSMUSG00000058729.7|lin-9 homolog (C. elegans)
mm10_v2_chr5_-_114380505_114380520	0.220815	Sox2	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr2_-_86347764_86347764	0.220809	Sox2	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr19_-_3686549_3686586	0.22072	Sox2	ENSMUST00000025856.10|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5 	ENSMUST00000176867.1|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5
mm10_v2_chr13_-_102905740_102905814	0.218089	Sox2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr2_-_24919572_24919616	0.217904	Sox2	ENSMUST00000046227.5|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000114432.2|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000091348.4|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000150379.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000152161.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000102938.3|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1
mm10_v2_chr11_-_31370066_31370080	0.217019	Sox2	ENSMUST00000020546.2|Stc2|ENSMUSG00000020303.2|stanniocalcin 2
mm10_v2_chr9_-_44735189_44735213	0.212702	Sox2	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr11_-_120598346_120598405	0.21192	Sox2	ENSMUST00000026125.2|Alyref|ENSMUSG00000025134.2|Aly/REF export factor
mm10_v2_chrX_-_94542037_94542143	0.211295	Sox2	ENSMUST00000026142.7|Maged1|ENSMUSG00000025151.10|melanoma antigen, family D, 1
mm10_v2_chr11_-_118355496_118355506	0.210958	Sox2	ENSMUST00000017610.3|Timp2|ENSMUSG00000017466.3|tissue inhibitor of metalloproteinase 2
mm10_v2_chr19_+_28990476_28990497	0.210645	Sox2	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chr4_-_20778852_20778876	0.209226	Sox2	ENSMUST00000102998.3|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr13_-_9764865_9764941	0.208596	Sox2	ENSMUST00000128658.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr19_+_8967031_8967050	0.205364	Sox2	ENSMUST00000052248.7|Eef1g|ENSMUSG00000071644.4|eukaryotic translation elongation factor 1 gamma
mm10_v2_chr6_-_30915552_30915590	0.205257	Sox2	ENSMUST00000048580.1|Tsga13|ENSMUSG00000039032.1|testis specific gene A13
mm10_v2_chr7_-_78577771_78577975	0.204791	Sox2	ENSMUST00000039438.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr7_-_47133395_47133437	0.202542	Sox2	ENSMUST00000107617.1|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr16_+_17070281_17070320	0.202492	Sox2	ENSMUST00000090199.3|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr1_+_74588347_74588383	0.202432	Sox2	ENSMUST00000113732.1|Bcs1l|ENSMUSG00000026172.6|BCS1-like (yeast)
mm10_v2_chr9_+_58554799_58554799	0.201182	Sox2	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr5_-_28467093_28467109	0.200203	Sox2	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr13_-_58402103_58402149	0.200114	Sox2	ENSMUST00000176305.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176558.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176849.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K
mm10_v2_chr9_+_37208291_37208360	0.199897	Sox2	ENSMUST00000034632.8|Tmem218|ENSMUSG00000032121.8|transmembrane protein 218
mm10_v2_chr11_+_80383397_80383415	0.19985	Sox2	ENSMUST00000053740.8|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr6_-_116628921_116628934	0.199505	Sox2	ENSMUST00000057540.5|Zfp422|ENSMUSG00000059878.6|zinc finger protein 422
mm10_v2_chr15_+_98634743_98634778	0.198661	Sox2	ENSMUST00000003442.7|Cacnb3|ENSMUSG00000003352.7|calcium channel, voltage-dependent, beta 3 subunit
mm10_v2_chr13_-_102906046_102906111	0.198208	Sox2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr5_+_88720855_88720876	0.197209	Sox2	ENSMUST00000113229.1|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B 	ENSMUST00000006424.7|Mob1b|ENSMUSG00000006262.9|MOB kinase activator 1B
mm10_v2_chr18_-_68300329_68300336	0.195987	Sox2	ENSMUST00000042852.6|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr8_+_122376676_122376701	0.192172	Sox2	ENSMUST00000176629.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr2_+_122426432_122426477	0.191414	Sox2	ENSMUST00000110525.1|Slc28a2|ENSMUSG00000027219.7|solute carrier family 28 (sodium-coupled nucleoside transporter), member 2
mm10_v2_chr15_+_34082664_34082734	0.191132	Sox2	ENSMUST00000022865.9|Mtdh|ENSMUSG00000022255.9|metadherin
mm10_v2_chr7_-_141429351_141429429	0.190737	Sox2	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr7_+_112679327_112679373	0.190425	Sox2	ENSMUST00000106638.2|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr1_+_81077204_81077252	0.190116	Sox2	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr11_+_43528759_43528796	0.189442	Sox2	ENSMUST00000050574.6|Ccnjl|ENSMUSG00000044707.7|cyclin J-like
mm10_v2_chr1_+_87213909_87213918	0.188895	Sox2	ENSMUST00000113232.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000113233.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000050876.7|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000076362.5|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2 	ENSMUST00000113235.1|Eif4e2|ENSMUSG00000026254.11|eukaryotic translation initiation factor 4E member 2
mm10_v2_chr1_+_17727034_17727088	0.188854	Sox2	ENSMUST00000159958.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000160305.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000095075.4|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1
mm10_v2_chr4_-_129696579_129696620	0.187653	Sox2	ENSMUST00000137640.1|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr11_-_87074055_87074071	0.187199	Sox2	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr3_-_95228636_95228719	0.1865	Sox2	ENSMUST00000065482.5|Mllt11|ENSMUSG00000053192.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11
mm10_v2_chr13_+_56702983_56703112	0.186068	Sox2	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr2_+_72297895_72297912	0.185415	Sox2	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr10_+_42860648_42860676	0.184994	Sox2	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr6_-_49264014_49264060	0.184149	Sox2	ENSMUST00000031841.7|Tra2a|ENSMUSG00000029817.9|transformer 2 alpha homolog (Drosophila)
mm10_v2_chr19_-_4906598_4906632	0.183254	Sox2	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr9_-_105495130_105495146	0.183234	Sox2	ENSMUST00000038118.7|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr3_-_34351685_34351715	0.182671	Sox2	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr13_-_34130345_34130361	0.18125	Sox2	ENSMUST00000075774.3|Tubb2b|ENSMUSG00000045136.5|tubulin, beta 2B class IIB
mm10_v2_chr11_+_90638127_90638207	0.179409	Sox2	ENSMUST00000020851.8|Cox11|ENSMUSG00000020544.8|cytochrome c oxidase assembly protein 11
mm10_v2_chr1_+_171895664_171895664	0.179118	Sox2	ENSMUST00000097466.2|Gm10521|ENSMUSG00000073492.2|predicted gene 10521
mm10_v2_chr18_-_34624562_34624601	0.178705	Sox2	ENSMUST00000003876.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115766.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000097626.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115765.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8
mm10_v2_chr8_-_124949165_124949372	0.178464	Sox2	ENSMUST00000034469.5|Egln1|ENSMUSG00000031987.5|EGL nine homolog 1 (C. elegans)
mm10_v2_chr11_-_4118778_4118831	0.177865	Sox2	ENSMUST00000003681.7|Sec14l2|ENSMUSG00000003585.7|SEC14-like 2 (S. cerevisiae)
mm10_v2_chr2_-_181599128_181599235	0.177264	Sox2	ENSMUST00000060173.8|Samd10|ENSMUSG00000038605.11|sterile alpha motif domain containing 10
mm10_v2_chr12_+_24831583_24831658	0.177027	Sox2	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr15_-_98918131_98918231	0.176017	Sox2	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr1_-_136260873_136260931	0.175317	Sox2	ENSMUST00000086395.5|Gpr25|ENSMUSG00000052759.6|G protein-coupled receptor 25
mm10_v2_chr5_+_118065360_118065360	0.175252	Sox2	ENSMUST00000031305.3|Gm9754|ENSMUSG00000029360.3|predicted gene 9754
mm10_v2_chr13_-_29984219_29984353	0.174184	Sox2	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chr9_+_106821874_106821994	0.173842	Sox2	ENSMUST00000159645.1|Vprbp|ENSMUSG00000040325.10|Vpr (HIV-1) binding protein
mm10_v2_chr7_-_141429433_141429491	0.173806	Sox2	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr4_+_138217235_138217310	0.171709	Sox2	ENSMUST00000130071.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr11_+_20201406_20201448	0.171112	Sox2	ENSMUST00000020358.5|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109602.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family 	ENSMUST00000109601.1|Rab1|ENSMUSG00000020149.11|RAB1, member RAS oncogene family
mm10_v2_chr14_+_121035538_121035575	0.170959	Sox2	ENSMUST00000026635.7|Farp1|ENSMUSG00000025555.8|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm10_v2_chr13_-_119408985_119409003	0.169853	Sox2	ENSMUST00000099149.3|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000069902.6|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase 	ENSMUST00000109204.1|Nnt|ENSMUSG00000025453.10|nicotinamide nucleotide transhydrogenase
mm10_v2_chr18_+_3382979_3383065	0.169644	Sox2	ENSMUST00000025073.5|Cul2|ENSMUSG00000024231.8|cullin 2
mm10_v2_chr2_-_165034770_165034820	0.169096	Sox2	ENSMUST00000122070.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000121377.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr4_-_33248500_33248518	0.167816	Sox2	ENSMUST00000049357.9|Pnrc1|ENSMUSG00000040128.9|proline-rich nuclear receptor coactivator 1
mm10_v2_chr14_+_4110526_4110526	0.166178	Sox2	ENSMUST00000170207.1|Gm8108|ENSMUSG00000091563.2|predicted gene 8108
mm10_v2_chr11_-_100613334_100613368	0.164886	Sox2	ENSMUST00000146840.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr14_-_7568566_7568566	0.164338	Sox2	ENSMUST00000163790.1|Gm3558|ENSMUSG00000079364.3|predicted gene 3558
mm10_v2_chr8_+_11728105_11728143	0.160574	Sox2	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr11_-_98400453_98400490	0.159823	Sox2	ENSMUST00000090827.5|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr12_-_73113407_73113456	0.159176	Sox2	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr8_-_67818218_67818269	0.158963	Sox2	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr9_+_3335470_3335501	0.15876	Sox2	ENSMUST00000053407.5|Alkbh8|ENSMUSG00000025899.7|alkB, alkylation repair homolog 8 (E. coli)
mm10_v2_chr4_-_129696817_129696843	0.158088	Sox2	ENSMUST00000102588.3|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr12_+_17544873_17544951	0.155831	Sox2	ENSMUST00000171737.1|Odc1|ENSMUSG00000011179.7|ornithine decarboxylase, structural 1
mm10_v2_chr1_+_58393119_58393147	0.155616	Sox2	ENSMUST00000050552.8|Bzw1|ENSMUSG00000051223.8|basic leucine zipper and W2 domains 1
mm10_v2_chr11_-_58938851_58938923	0.155591	Sox2	ENSMUST00000094151.5|Rnf187|ENSMUSG00000020496.8|ring finger protein 187
mm10_v2_chrX_-_38576166_38576187	0.15336	Sox2	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr11_+_104231465_104231507	0.152494	Sox2	ENSMUST00000145227.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr19_-_10240689_10240751	0.152158	Sox2	ENSMUST00000088013.5|Myrf|ENSMUSG00000036098.9|myelin regulatory factor
mm10_v2_chr6_+_29281138_29281148	0.151564	Sox2	ENSMUST00000115286.2|Fam71f2|ENSMUSG00000079652.2|family with sequence similarity 71, member F2
mm10_v2_chr5_-_33274966_33275010	0.151193	Sox2	ENSMUST00000079746.6|Ctbp1|ENSMUSG00000037373.9|C-terminal binding protein 1
mm10_v2_chr5_+_30711564_30711586	0.150582	Sox2	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr7_+_66109474_66109515	0.150557	Sox2	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr11_+_104231515_104231528	0.149498	Sox2	ENSMUST00000106993.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chrX_+_162901226_162901261	0.149497	Sox2	ENSMUST00000101095.2|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr2_+_181767040_181767073	0.149024	Sox2	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr10_+_7667503_7667558	0.148397	Sox2	ENSMUST00000040135.8|Nup43|ENSMUSG00000040034.9|nucleoporin 43
mm10_v2_chr2_+_15055274_15055379	0.148226	Sox2	ENSMUST00000069870.3|Arl5b|ENSMUSG00000017418.7|ADP-ribosylation factor-like 5B
mm10_v2_chr11_+_62077018_62077101	0.147516	Sox2	ENSMUST00000092415.5|Specc1|ENSMUSG00000042331.7|sperm antigen with calponin homology and coiled-coil domains 1
mm10_v2_chr3_+_88142328_88142483	0.147355	Sox2	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr10_+_53596936_53597004	0.147318	Sox2	ENSMUST00000020004.6|Asf1a|ENSMUSG00000019857.6|ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
mm10_v2_chr2_-_167631972_167632095	0.146954	Sox2	ENSMUST00000060645.6|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000140216.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000151365.1|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1 	ENSMUST00000109207.3|Ube2v1|ENSMUSG00000078923.4|ubiquitin-conjugating enzyme E2 variant 1
mm10_v2_chr11_-_54787597_54787711	0.145951	Sox2	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr7_-_105787544_105787555	0.145896	Sox2	ENSMUST00000078482.5|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila) 	ENSMUST00000154659.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr17_+_48409980_48410104	0.145539	Sox2	ENSMUST00000167180.1|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1 	ENSMUST00000046651.6|Oard1|ENSMUSG00000040771.7|O-acyl-ADP-ribose deacylase 1
mm10_v2_chr8_+_71464910_71465000	0.144882	Sox2	ENSMUST00000048914.6|Mrpl34|ENSMUSG00000034880.6|mitochondrial ribosomal protein L34
mm10_v2_chr17_+_47505117_47505132	0.144712	Sox2	ENSMUST00000183044.1|Ccnd3|ENSMUSG00000034165.10|cyclin D3 	ENSMUST00000037333.10|Ccnd3|ENSMUSG00000034165.10|cyclin D3
mm10_v2_chr2_+_32629467_32629514	0.142214	Sox2	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr4_-_150003130_150003149	0.140246	Sox2	ENSMUST00000084117.6|H6pd|ENSMUSG00000028980.8|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm10_v2_chr2_-_35432552_35432633	0.139748	Sox2	ENSMUST00000079424.4|Ggta1|ENSMUSG00000035778.11|glycoprotein galactosyltransferase alpha 1, 3
mm10_v2_chr9_+_65214690_65214690	0.138498	Sox2	ENSMUST00000069000.7|Parp16|ENSMUSG00000032392.10|poly (ADP-ribose) polymerase family, member 16
mm10_v2_chr3_+_20057802_20057857	0.137855	Sox2	ENSMUST00000002502.5|Hltf|ENSMUSG00000002428.6|helicase-like transcription factor
mm10_v2_chr17_-_50094277_50094332	0.137489	Sox2	ENSMUST00000113195.1|Rftn1|ENSMUSG00000039316.8|raftlin lipid raft linker 1
mm10_v2_chr5_-_143732273_143732316	0.136339	Sox2	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr6_-_120493807_120493913	0.135964	Sox2	ENSMUST00000178687.1|Cecr6|ENSMUSG00000094626.1|cat eye syndrome chromosome region, candidate 6
mm10_v2_chr5_+_143548700_143548756	0.135911	Sox2	ENSMUST00000169329.1|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000067145.5|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000119488.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A 	ENSMUST00000118121.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A
mm10_v2_chr14_+_65971164_65971303	0.13507	Sox2	ENSMUST00000144619.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr12_+_29528382_29528468	0.134602	Sox2	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr8_+_92827273_92827395	0.134258	Sox2	ENSMUST00000034187.7|Mmp2|ENSMUSG00000031740.7|matrix metallopeptidase 2
mm10_v2_chr19_-_10949238_10949277	0.133212	Sox2	ENSMUST00000025639.6|Ccdc86|ENSMUSG00000024732.6|coiled-coil domain containing 86
mm10_v2_chr2_+_181767283_181767322	0.132769	Sox2	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr16_-_30550560_30550594	0.132621	Sox2	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr9_+_77754526_77754541	0.132485	Sox2	ENSMUST00000034905.8|Gclc|ENSMUSG00000032350.8|glutamate-cysteine ligase, catalytic subunit
mm10_v2_chrX_+_159840463_159840481	0.131405	Sox2	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr1_-_16520067_16520095	0.130968	Sox2	ENSMUST00000131257.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila) 	ENSMUST00000153966.2|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr14_-_26638183_26638183	0.129441	Sox2	ENSMUST00000166902.1|4930570N19Rik|ENSMUSG00000090861.1|RIKEN cDNA 4930570N19 gene
mm10_v2_chr3_-_108210438_108210502	0.127922	Sox2	ENSMUST00000117784.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000119650.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2 	ENSMUST00000117409.1|Atxn7l2|ENSMUSG00000048997.11|ataxin 7-like 2
mm10_v2_chr10_+_62133082_62133098	0.127372	Sox2	ENSMUST00000050103.1|Neurog3|ENSMUSG00000044312.3|neurogenin 3
mm10_v2_chr5_+_104775911_104775911	0.127353	Sox2	ENSMUST00000055593.7|Gm8258|ENSMUSG00000048334.7|predicted gene 8258
mm10_v2_chr11_-_3863895_3863910	0.126508	Sox2	ENSMUST00000070552.7|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr5_-_136198908_136198970	0.12547	Sox2	ENSMUST00000149151.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible) 	ENSMUST00000151786.1|Prkrip1|ENSMUSG00000039737.5|Prkr interacting protein 1 (IL11 inducible)
mm10_v2_chr9_-_57765845_57765876	0.124062	Sox2	ENSMUST00000065330.6|Clk3|ENSMUSG00000032316.7|CDC-like kinase 3
mm10_v2_chr1_+_158362261_158362304	0.123609	Sox2	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr5_-_65697856_65697963	0.122871	Sox2	ENSMUST00000031104.6|Pds5a|ENSMUSG00000029202.9|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
mm10_v2_chr7_-_84409959_84410002	0.122087	Sox2	ENSMUST00000085077.3|Arnt2|ENSMUSG00000015709.8|aryl hydrocarbon receptor nuclear translocator 2
mm10_v2_chr4_-_132345686_132345708	0.120732	Sox2	ENSMUST00000030726.6|Rcc1|ENSMUSG00000028896.7|regulator of chromosome condensation 1
mm10_v2_chr14_+_4415448_4415448	0.119908	Sox2	ENSMUST00000168866.1|Gm3164|ENSMUSG00000091418.2|predicted gene 3164
mm10_v2_chr5_-_125389915_125390055	0.119709	Sox2	ENSMUST00000136312.1|Ubc|ENSMUSG00000008348.9|ubiquitin C
mm10_v2_chr19_-_7383026_7383063	0.118332	Sox2	ENSMUST00000025924.2|AI846148|ENSMUSG00000024970.4|expressed sequence AI846148
mm10_v2_chr2_+_27676440_27676454	0.118037	Sox2	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr3_-_97227364_97227421	0.117961	Sox2	ENSMUST00000046521.7|Bcl9|ENSMUSG00000038256.9|B cell CLL/lymphoma 9
mm10_v2_chr18_+_4921662_4921726	0.117328	Sox2	ENSMUST00000143254.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr19_+_23619742_23619742	0.117153	Sox2	ENSMUST00000104916.2|Gm9493|ENSMUSG00000044424.3|predicted gene 9493
mm10_v2_chr2_+_167015193_167015336	0.117123	Sox2	ENSMUST00000018143.9|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000176066.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000150571.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
mm10_v2_chr6_+_124916863_124916863	0.117052	Sox2	ENSMUST00000069553.2|A230083G16Rik|ENSMUSG00000055818.2|RIKEN cDNA A230083G16 gene
mm10_v2_chr10_-_57532489_57532530	0.116469	Sox2	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr11_+_105181793_105181982	0.115415	Sox2	ENSMUST00000092537.3|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000015107.6|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis) 	ENSMUST00000145048.1|Tlk2|ENSMUSG00000020694.10|tousled-like kinase 2 (Arabidopsis)
mm10_v2_chrX_+_74270812_74270979	0.11363	Sox2	ENSMUST00000008826.7|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000151702.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000074085.5|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000135690.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10
mm10_v2_chr15_-_95528228_95528266	0.113377	Sox2	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_+_160731258_160731310	0.112675	Sox2	ENSMUST00000103115.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr19_-_56822161_56822220	0.111034	Sox2	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr7_-_105574324_105574402	0.109331	Sox2	ENSMUST00000081165.7|Apbb1|ENSMUSG00000037032.9|amyloid beta (A4) precursor protein-binding, family B, member 1
mm10_v2_chr5_-_62765618_62765656	0.108813	Sox2	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr10_-_39986625_39986648	0.108741	Sox2	ENSMUST00000170579.1|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000045524.6|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000073618.5|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785 	ENSMUST00000164566.1|BC021785|ENSMUSG00000038528.8|cDNA sequence BC021785
mm10_v2_chr17_+_21733704_21733724	0.108608	Sox2	ENSMUST00000183192.1|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229 	ENSMUST00000065871.7|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229
mm10_v2_chr17_-_35000746_35000801	0.108385	Sox2	ENSMUST00000163360.1|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr2_-_33942111_33942151	0.107407	Sox2	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr13_+_23575753_23575773	0.10689	Sox2	ENSMUST00000105105.1|Hist1h3d|ENSMUSG00000062808.4|histone cluster 1, H3d
mm10_v2_chr1_-_147281942_147281942	0.106383	Sox2	ENSMUST00000066758.2|Gm9931|ENSMUSG00000053988.2|predicted gene 9931
mm10_v2_chr1_-_16520106_16520133	0.104833	Sox2	ENSMUST00000162435.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr17_-_35121990_35122053	0.104522	Sox2	ENSMUST00000173915.1|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide 	ENSMUST00000172765.2|Csnk2b|ENSMUSG00000024387.7|casein kinase 2, beta polypeptide
mm10_v2_chr12_+_111039334_111039400	0.103941	Sox2	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr17_+_43667389_43667425	0.101861	Sox2	ENSMUST00000170988.1|Cyp39a1|ENSMUSG00000023963.9|cytochrome P450, family 39, subfamily a, polypeptide 1
mm10_v2_chr19_-_46395722_46395756	0.100566	Sox2	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chr6_+_83795022_83795034	0.100073	Sox2	ENSMUST00000113851.1|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr9_+_55208925_55208989	0.0999541	Sox2	ENSMUST00000034859.8|Fbxo22|ENSMUSG00000032309.9|F-box protein 22
mm10_v2_chr14_+_58070547_58070547	0.099688	Sox2	ENSMUST00000165526.1|Fgf9|ENSMUSG00000021974.8|fibroblast growth factor 9
mm10_v2_chr5_-_149051604_149051624	0.0994537	Sox2	ENSMUST00000093196.4|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr15_-_36308956_36308956	0.0981596	Sox2	ENSMUST00000090170.4|Rpl7a-ps3|ENSMUSG00000068579.4|ribosomal protein L7A, pseudogene 3
mm10_v2_chr11_+_75679542_75679637	0.097541	Sox2	ENSMUST00000147718.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr11_-_62731865_62731910	0.0963473	Sox2	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr7_+_6172482_6172531	0.0962993	Sox2	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr1_-_38821215_38821215	0.0957749	Sox2	ENSMUST00000039612.4|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr1_+_137928100_137928170	0.0954642	Sox2	ENSMUST00000054333.2|A130050O07Rik|ENSMUSG00000051480.2|RIKEN cDNA A130050O07 gene
mm10_v2_chr1_-_36558214_36558266	0.0950574	Sox2	ENSMUST00000154493.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr3_-_154330543_154330576	0.0946197	Sox2	ENSMUST00000184966.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8 	ENSMUST00000177846.2|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr4_+_116558056_116558090	0.0945193	Sox2	ENSMUST00000106475.1|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr4_+_135759705_135759720	0.0931568	Sox2	ENSMUST00000105854.1|Myom3|ENSMUSG00000037139.9|myomesin family, member 3
mm10_v2_chr18_+_34625009_34625033	0.091527	Sox2	ENSMUST00000166044.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr7_-_109960461_109960477	0.0914709	Sox2	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr10_+_127063599_127063655	0.091059	Sox2	ENSMUST00000120226.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4 	ENSMUST00000133115.1|Cdk4|ENSMUSG00000006728.6|cyclin-dependent kinase 4
mm10_v2_chr17_+_29032664_29032681	0.0905156	Sox2	ENSMUST00000130216.1|Srsf3|ENSMUSG00000071172.6|serine/arginine-rich splicing factor 3
mm10_v2_chr19_-_46039442_46039481	0.0903713	Sox2	ENSMUST00000137771.1|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr14_+_3332627_3332627	0.0903041	Sox2	ENSMUST00000177786.1|Gm2956|ENSMUSG00000096574.1|predicted gene 2956
mm10_v2_chr7_-_131614988_131614988	0.0881492	Sox2	ENSMUST00000085365.5|Gm16477|ENSMUSG00000062758.6|predicted pseudogene 16477
mm10_v2_chr10_+_69213084_69213228	0.0878946	Sox2	ENSMUST00000163497.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000164212.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000067908.7|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chr17_-_56476462_56476483	0.0865684	Sox2	ENSMUST00000067538.5|Ptprs|ENSMUSG00000013236.10|protein tyrosine phosphatase, receptor type, S
mm10_v2_chr19_-_3575708_3575756	0.0862334	Sox2	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr11_-_6444352_6444443	0.0850229	Sox2	ENSMUST00000093346.5|H2afv|ENSMUSG00000041126.10|H2A histone family, member V 	ENSMUST00000109737.2|H2afv|ENSMUSG00000041126.10|H2A histone family, member V
mm10_v2_chr2_-_151009364_151009398	0.0846373	Sox2	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr2_+_125859134_125859225	0.0837694	Sox2	ENSMUST00000028636.6|Galk2|ENSMUSG00000027207.9|galactokinase 2 	ENSMUST00000125084.1|Galk2|ENSMUSG00000027207.9|galactokinase 2
mm10_v2_chr13_-_117025505_117025541	0.0835693	Sox2	ENSMUST00000022239.6|Parp8|ENSMUSG00000021725.8|poly (ADP-ribose) polymerase family, member 8
mm10_v2_chr19_+_4756557_4756623	0.08337	Sox2	ENSMUST00000036744.7|Rbm4b|ENSMUSG00000033760.10|RNA binding motif protein 4B
mm10_v2_chr12_-_111713185_111713257	0.0828383	Sox2	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr6_+_83794974_83794985	0.0810097	Sox2	ENSMUST00000037376.7|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr13_-_99412816_99412864	0.0809873	Sox2	ENSMUST00000180808.1|6430562O15Rik|ENSMUSG00000097828.1|RIKEN cDNA 6430562O15 gene
mm10_v2_chr4_+_140701466_140701509	0.0807591	Sox2	ENSMUST00000038893.5|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2 	ENSMUST00000138808.1|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr17_+_35000987_35001097	0.0805859	Sox2	ENSMUST00000087315.7|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase 	ENSMUST00000173584.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr1_-_36558349_36558366	0.0803379	Sox2	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr19_+_7417586_7417650	0.0797684	Sox2	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr10_+_93831555_93831555	0.079722	Sox2	ENSMUST00000095333.4|Usp44|ENSMUSG00000020020.7|ubiquitin specific peptidase 44
mm10_v2_chr1_-_88702121_88702221	0.0795883	Sox2	ENSMUST00000159814.1|Arl4c|ENSMUSG00000049866.6|ADP-ribosylation factor-like 4C
mm10_v2_chr7_-_37769624_37769677	0.0787306	Sox2	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr11_-_88718078_88718104	0.0772923	Sox2	ENSMUST00000092794.5|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr8_+_70697739_70697739	0.0770439	Sox2	ENSMUST00000095267.4|Jund|ENSMUSG00000071076.5|Jun proto-oncogene related gene d
mm10_v2_chr17_-_56935388_56935504	0.0769848	Sox2	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chrX_-_103981242_103981287	0.0763089	Sox2	ENSMUST00000121153.1|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting 	ENSMUST00000070705.4|Rlim|ENSMUSG00000056537.5|ring finger protein, LIM domain interacting
mm10_v2_chr2_+_4882204_4882252	0.0759277	Sox2	ENSMUST00000115019.1|Sephs1|ENSMUSG00000026662.7|selenophosphate synthetase 1
mm10_v2_chr11_-_102447647_102447682	0.0755712	Sox2	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr7_+_4915202_4915230	0.0746331	Sox2	ENSMUST00000116354.2|Zfp628|ENSMUSG00000074406.4|zinc finger protein 628
mm10_v2_chr7_-_30169701_30169766	0.0742015	Sox2	ENSMUST00000062181.7|Zfp146|ENSMUSG00000037029.7|zinc finger protein 146
mm10_v2_chr7_-_126475082_126475130	0.0723801	Sox2	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr2_-_168767029_168767104	0.0722698	Sox2	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr17_-_71460395_71460395	0.0717038	Sox2	ENSMUST00000180522.1|Gm4707|ENSMUSG00000091831.4|predicted gene 4707
mm10_v2_chr7_+_12834743_12834811	0.0715838	Sox2	ENSMUST00000004614.8|Zfp110|ENSMUSG00000058638.7|zinc finger protein 110
mm10_v2_chr14_-_5880382_5880382	0.070684	Sox2	ENSMUST00000164484.1|Gm8237|ENSMUSG00000090707.2|predicted gene 8237
mm10_v2_chr18_+_60212080_60212122	0.0705894	Sox2	ENSMUST00000031549.5|Gm4951|ENSMUSG00000073555.1|predicted gene 4951
mm10_v2_chr18_+_76241892_76242046	0.0687607	Sox2	ENSMUST00000171256.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr16_-_17911303_17911354	0.0679926	Sox2	ENSMUST00000003621.8|Dgcr14|ENSMUSG00000003527.8|DiGeorge syndrome critical region gene 14
mm10_v2_chr2_+_163438455_163438536	0.0670864	Sox2	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chrX_+_162901762_162901870	0.0666864	Sox2	ENSMUST00000112302.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2 	ENSMUST00000112301.1|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr13_-_22035589_22035643	0.0647052	Sox2	ENSMUST00000091742.4|Hist1h2ah|ENSMUSG00000069302.4|histone cluster 1, H2ah
mm10_v2_chr2_+_172472512_172472535	0.0641418	Sox2	ENSMUST00000029007.2|Fam209|ENSMUSG00000027505.2|family with sequence similarity 209
mm10_v2_chr14_+_80000292_80000309	0.06397	Sox2	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr2_-_168206875_168206922	0.0635395	Sox2	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chrX_-_38576189_38576204	0.0632762	Sox2	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr15_-_36794498_36794547	0.063189	Sox2	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr6_-_128437653_128437730	0.0623052	Sox2	ENSMUST00000151796.1|Fkbp4|ENSMUSG00000030357.4|FK506 binding protein 4
mm10_v2_chr17_+_35059035_35059130	0.061766	Sox2	ENSMUST00000007255.6|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2 	ENSMUST00000174493.1|Ddah2|ENSMUSG00000007039.6|dimethylarginine dimethylaminohydrolase 2
mm10_v2_chr19_-_40588374_40588426	0.0609397	Sox2	ENSMUST00000175932.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000176955.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000149476.2|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr5_+_30711849_30711905	0.0606177	Sox2	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr7_-_74013676_74013699	0.0595466	Sox2	ENSMUST00000026896.4|St8sia2|ENSMUSG00000025789.4|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm10_v2_chr17_+_46890621_46890652	0.058172	Sox2	ENSMUST00000040434.7|Tbcc|ENSMUSG00000036430.7|tubulin-specific chaperone C
mm10_v2_chr15_+_75704280_75704394	0.0579555	Sox2	ENSMUST00000121137.1|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1 	ENSMUST00000023244.5|Rhpn1|ENSMUSG00000022580.6|rhophilin, Rho GTPase binding protein 1
mm10_v2_chr8_+_71908595_71908657	0.0571133	Sox2	ENSMUST00000110002.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882 	ENSMUST00000131544.1|Zfp617|ENSMUSG00000066880.9|zinc finger protein 617 	ENSMUST00000125802.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882
mm10_v2_chr4_-_91376490_91376502	0.056192	Sox2	ENSMUST00000107124.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr11_-_98400393_98400446	0.0561399	Sox2	ENSMUST00000128897.1|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr7_-_13009795_13009856	0.0560813	Sox2	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr14_+_70554056_70554056	0.0552036	Sox2	ENSMUST00000022691.7|Hr|ENSMUSG00000022096.8|hairless
mm10_v2_chr13_-_98926374_98926389	0.0551643	Sox2	ENSMUST00000109401.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr17_+_26252903_26252914	0.0551286	Sox2	ENSMUST00000025023.7|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr14_-_5389049_5389049	0.0539011	Sox2	ENSMUST00000177986.1|Gm3500|ENSMUSG00000096003.1|predicted gene 3500
mm10_v2_chr4_-_75278246_75278338	0.0538125	Sox2	ENSMUST00000030103.8|Tmem261|ENSMUSG00000028398.8|transmembrane protein 261
mm10_v2_chr2_-_67194695_67194736	0.0536608	Sox2	ENSMUST00000147939.1|Gm13598|ENSMUSG00000086908.1|predicted gene 13598
mm10_v2_chr16_+_78301458_78301496	0.0531797	Sox2	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr15_+_81872309_81872309	0.0527066	Sox2	ENSMUST00000023116.6|Aco2|ENSMUSG00000022477.6|aconitase 2, mitochondrial
mm10_v2_chr1_-_180330550_180330550	0.0525226	Sox2	ENSMUST00000050581.3|Gm5069|ENSMUSG00000055676.3|predicted pseudogene 5069
mm10_v2_chr14_-_68655804_68655842	0.050241	Sox2	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr14_-_70766598_70766644	0.0500393	Sox2	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr17_-_78684262_78684352	0.0487012	Sox2	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr19_+_8941865_8942050	0.0485021	Sox2	ENSMUST00000096240.2|Mta2|ENSMUSG00000071646.3|metastasis-associated gene family, member 2
mm10_v2_chr3_-_158016419_158016453	0.0467618	Sox2	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr16_-_4559720_4559747	0.0466772	Sox2	ENSMUST00000005862.7|Tfap4|ENSMUSG00000005718.7|transcription factor AP4
mm10_v2_chr16_-_20425881_20425986	0.0464143	Sox2	ENSMUST00000077867.3|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr4_-_91376433_91376477	0.0459546	Sox2	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr15_-_95528702_95528777	0.0452318	Sox2	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr2_-_152831112_152831326	0.0444838	Sox2	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr5_+_124541296_124541329	0.0428244	Sox2	ENSMUST00000124529.1|Tmed2|ENSMUSG00000029390.7|transmembrane emp24 domain trafficking protein 2
mm10_v2_chr2_+_180042496_180042562	0.0413421	Sox2	ENSMUST00000041126.8|Ss18l1|ENSMUSG00000039086.9|synovial sarcoma translocation gene on chromosome 18-like 1
mm10_v2_chr18_+_36793918_36793937	0.0389859	Sox2	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr17_-_35838208_35838243	0.0382629	Sox2	ENSMUST00000134978.2|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr6_+_83795205_83795238	0.0381133	Sox2	ENSMUST00000113850.1|Nagk|ENSMUSG00000034744.7|N-acetylglucosamine kinase
mm10_v2_chr17_-_35838259_35838306	0.0361521	Sox2	ENSMUST00000001566.8|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr8_-_83332416_83332494	0.0357522	Sox2	ENSMUST00000177594.1|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2 	ENSMUST00000053902.3|Elmod2|ENSMUSG00000035151.6|ELMO/CED-12 domain containing 2
mm10_v2_chr15_-_98953541_98953560	0.0356408	Sox2	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr14_-_6287250_6287250	0.0354505	Sox2	ENSMUST00000170104.2|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chr3_-_50443603_50443615	0.0350833	Sox2	ENSMUST00000029297.4|Slc7a11|ENSMUSG00000027737.5|solute carrier family 7 (cationic amino acid transporter, y+ system), member 11
mm10_v2_chr5_-_112228900_112228929	0.0339543	Sox2	ENSMUST00000182509.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr3_-_84040151_84040171	0.0336998	Sox2	ENSMUST00000052342.7|D930015E06Rik|ENSMUSG00000033767.9|RIKEN cDNA D930015E06 gene
mm10_v2_chr19_-_40588338_40588371	0.0336522	Sox2	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr18_-_88894322_88894371	0.0335347	Sox2	ENSMUST00000070116.5|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6 	ENSMUST00000125362.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr2_-_173276526_173276544	0.0329494	Sox2	ENSMUST00000036248.6|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr5_-_122988533_122988705	0.0328432	Sox2	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr11_-_82890541_82890626	0.0315889	Sox2	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr7_+_141949846_141949868	0.0286313	Sox2	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr2_+_28513105_28513126	0.0282784	Sox2	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr11_+_116918844_116918888	0.0280469	Sox2	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr11_-_106160708_106160860	0.0273304	Sox2	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr11_+_93886157_93886219	0.0271771	Sox2	ENSMUST00000063718.4|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1 	ENSMUST00000107854.2|Mbtd1|ENSMUSG00000059474.7|mbt domain containing 1
mm10_v2_chr2_+_131491764_131491943	0.0271119	Sox2	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr18_+_76242135_76242174	0.0269768	Sox2	ENSMUST00000172198.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr3_+_90476121_90476220	0.0269401	Sox2	ENSMUST00000001042.8|Ilf2|ENSMUSG00000001016.8|interleukin enhancer binding factor 2
mm10_v2_chr3_+_146500071_146500109	0.0256367	Sox2	ENSMUST00000119130.1|Gng5|ENSMUSG00000068523.6|guanine nucleotide binding protein (G protein), gamma 5
mm10_v2_chr8_+_86745679_86745699	0.0253076	Sox2	ENSMUST00000098532.2|Gm10638|ENSMUSG00000074178.2|predicted gene 10638
mm10_v2_chr7_-_37772868_37772891	0.0249527	Sox2	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr2_-_27475622_27475698	0.024774	Sox2	ENSMUST00000138693.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3 	ENSMUST00000113941.2|Brd3|ENSMUSG00000026918.10|bromodomain containing 3 	ENSMUST00000077737.6|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr17_-_55712571_55712630	0.0242177	Sox2	ENSMUST00000086876.5|Pot1b|ENSMUSG00000024174.8|protection of telomeres 1B
mm10_v2_chr1_+_17145357_17145431	0.0228193	Sox2	ENSMUST00000026879.7|Gdap1|ENSMUSG00000025777.7|ganglioside-induced differentiation-associated-protein 1
mm10_v2_chr6_-_88875035_88875053	0.0219084	Sox2	ENSMUST00000145944.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr11_+_58330744_58330777	0.0212488	Sox2	ENSMUST00000073128.6|Sh3bp5l|ENSMUSG00000013646.11|SH3 binding domain protein 5 like
mm10_v2_chr3_+_68572245_68572392	0.0212362	Sox2	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr5_-_134456702_134456785	0.0200005	Sox2	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr2_-_63184253_63184292	0.0199759	Sox2	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr5_-_112228633_112228680	0.0193913	Sox2	ENSMUST00000182699.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000182258.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000183036.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr9_+_54863742_54863801	0.0193624	Sox2	ENSMUST00000034843.7|Ireb2|ENSMUSG00000032293.7|iron responsive element binding protein 2
mm10_v2_chr17_-_23586214_23586269	0.0187093	Sox2	ENSMUST00000115516.3|Zfp13|ENSMUSG00000062012.7|zinc finger protein 13
mm10_v2_chr2_-_118479635_118479711	0.0186142	Sox2	ENSMUST00000110862.1|Srp14|ENSMUSG00000009549.8|signal recognition particle 14 	ENSMUST00000009693.8|Srp14|ENSMUSG00000009549.8|signal recognition particle 14
mm10_v2_chr11_-_106920359_106920643	0.0173638	Sox2	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr7_+_28180272_28180316	0.0172558	Sox2	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr5_+_108065696_108065738	0.0170453	Sox2	ENSMUST00000172045.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr12_+_3365108_3365142	0.0164416	Sox2	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr7_-_27196138_27196271	0.0152732	Sox2	ENSMUST00000122202.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000080356.3|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr11_+_6389330_6389397	0.0148416	Sox2	ENSMUST00000012612.4|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr5_-_105343929_105343929	0.0144187	Sox2	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr19_+_45018114_45018153	0.0138206	Sox2	ENSMUST00000178087.1|Lzts2|ENSMUSG00000035342.7|leucine zipper, putative tumor suppressor 2
mm10_v2_chr15_-_50882806_50882822	0.0123398	Sox2	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr14_+_4334763_4334763	0.0117561	Sox2	ENSMUST00000165466.1|2610042L04Rik|ENSMUSG00000079388.3|RIKEN cDNA 2610042L04 gene
mm10_v2_chr7_+_127967457_127967508	0.0112173	Sox2	ENSMUST00000106251.3|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000077609.5|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000121616.2|Fus|ENSMUSG00000030795.12|fused in sarcoma
mm10_v2_chr9_+_51621425_51621425	0.0107702	Sox2	ENSMUST00000089534.4|Gm7293|ENSMUSG00000078308.1|predicted gene 7293
mm10_v2_chr7_+_24507099_24507110	0.0106188	Sox2	ENSMUST00000177228.1|Zfp428|ENSMUSG00000064264.8|zinc finger protein 428
mm10_v2_chr10_+_90576872_90576992	0.0086141	Sox2	ENSMUST00000182550.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000099364.5|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr2_+_9882622_9882646	0.00857637	Sox2	ENSMUST00000114919.1|4930412O13Rik|ENSMUSG00000025783.2|RIKEN cDNA 4930412O13 gene
mm10_v2_chr4_-_148152059_148152146	0.008367	Sox2	ENSMUST00000056965.5|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000168503.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6 	ENSMUST00000152098.1|Fbxo6|ENSMUSG00000055401.8|F-box protein 6
mm10_v2_chrX_+_166238901_166238914	0.00785999	Sox2	ENSMUST00000112235.1|Gpm6b|ENSMUSG00000031342.11|glycoprotein m6b
mm10_v2_chr5_-_138170992_138171033	0.00731209	Sox2	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr6_-_39557830_39557867	0.00551895	Sox2	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr14_-_19585135_19585135	0.00529632	Sox2	ENSMUST00000170694.1|Gm2237|ENSMUSG00000093979.1|predicted gene 2237
mm10_v2_chr7_-_116038734_116038750	0.00475288	Sox2	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr3_-_116424007_116424032	0.00445842	Sox2	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr3_-_10351313_10351342	0.0041353	Sox2	ENSMUST00000108377.1|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1 	ENSMUST00000037839.5|Zfand1|ENSMUSG00000039795.8|zinc finger, AN1-type domain 1
mm10_v2_chr8_-_67974567_67974596	0.00400424	Sox2	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr16_-_56024628_56024668	0.00346809	Sox2	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr11_-_107794557_107794729	0.00339037	Sox2	ENSMUST00000021066.3|Cacng4|ENSMUSG00000020723.3|calcium channel, voltage-dependent, gamma subunit 4
mm10_v2_chr19_-_30175414_30175436	0.00246851	Sox2	ENSMUST00000025778.7|Gldc|ENSMUSG00000024827.9|glycine decarboxylase
mm10_v2_chr3_-_116423930_116423993	0.00244861	Sox2	ENSMUST00000106491.2|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr15_+_76343504_76343558	0.00185939	Sox2	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
