mm10_v2_chrX_-_61185558_61185558	18.2162	Aire	ENSMUST00000166381.1|Cdr1|ENSMUSG00000090546.1|cerebellar degeneration related antigen 1
mm10_v2_chr10_+_123264076_123264125	3.15923	Aire	ENSMUST00000050756.7|Fam19a2|ENSMUSG00000044071.7|family with sequence similarity 19, member A2
mm10_v2_chr13_-_110280103_110280213	2.67786	Aire	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr12_-_78983476_78983493	1.97346	Aire	ENSMUST00000070174.7|Tmem229b|ENSMUSG00000046157.7|transmembrane protein 229B
mm10_v2_chr16_+_36875119_36875205	1.82802	Aire	ENSMUST00000135406.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000023534.6|Golgb1|ENSMUSG00000078096.1|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000114812.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1 	ENSMUST00000134616.1|Golgb1|ENSMUSG00000034243.10|golgi autoantigen, golgin subfamily b, macrogolgin 1
mm10_v2_chr19_-_28963863_28963908	1.78877	Aire	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr10_+_86021961_86021991	1.72074	Aire	ENSMUST00000130320.1|Fbxo7|ENSMUSG00000001786.8|F-box protein 7
mm10_v2_chr3_-_116968969_116969004	1.58612	Aire	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr8_+_69808672_69808742	1.37102	Aire	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr7_-_14562171_14562171	1.18565	Aire	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr14_+_76476913_76476930	1.13683	Aire	ENSMUST00000140251.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr18_+_37400845_37400886	1.11671	Aire	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr8_+_64947177_64947255	1.09609	Aire	ENSMUST00000079896.7|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192 	ENSMUST00000026595.5|Tmem192|ENSMUSG00000025521.8|transmembrane protein 192
mm10_v2_chr9_-_97111117_97111159	1.07989	Aire	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr2_+_55435918_55435970	0.991216	Aire	ENSMUST00000067101.3|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr19_+_34217588_34217624	0.975224	Aire	ENSMUST00000119603.1|Stambpl1|ENSMUSG00000024776.11|STAM binding protein like 1
mm10_v2_chr5_-_84417359_84417389	0.966443	Aire	ENSMUST00000113401.1|Epha5|ENSMUSG00000029245.10|Eph receptor A5
mm10_v2_chr4_-_46566432_46566471	0.937472	Aire	ENSMUST00000030021.7|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A 	ENSMUST00000107757.1|Coro2a|ENSMUSG00000028337.8|coronin, actin binding protein 2A
mm10_v2_chr2_+_164948219_164948245	0.931753	Aire	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr2_-_134644079_134644109	0.824833	Aire	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr10_-_81014902_81014945	0.771946	Aire	ENSMUST00000126317.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000092285.3|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7 	ENSMUST00000117805.1|Gng7|ENSMUSG00000048240.8|guanine nucleotide binding protein (G protein), gamma 7
mm10_v2_chr8_-_4216912_4217003	0.690242	Aire	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr17_+_35236556_35236607	0.689438	Aire	ENSMUST00000068261.8|Atp6v1g2|ENSMUSG00000024403.10|ATPase, H+ transporting, lysosomal V1 subunit G2
mm10_v2_chr11_-_115627948_115628122	0.646036	Aire	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr5_+_43672289_43672326	0.644859	Aire	ENSMUST00000156034.1|Cc2d2a|ENSMUSG00000039765.9|coiled-coil and C2 domain containing 2A
mm10_v2_chr8_-_4217133_4217168	0.642685	Aire	ENSMUST00000175906.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr3_-_62506970_62507027	0.639044	Aire	ENSMUST00000029336.4|Dhx36|ENSMUSG00000027770.4|DEAH (Asp-Glu-Ala-His) box polypeptide 36
mm10_v2_chr9_-_53610329_53610382	0.636094	Aire	ENSMUST00000034547.5|Acat1|ENSMUSG00000032047.5|acetyl-Coenzyme A acetyltransferase 1
mm10_v2_chr7_-_127895578_127895647	0.630048	Aire	ENSMUST00000033074.6|Vkorc1|ENSMUSG00000096145.1|vitamin K epoxide reductase complex, subunit 1
mm10_v2_chr17_+_22689771_22689771	0.617572	Aire	ENSMUST00000055305.8|Gm9805|ENSMUSG00000046088.8|predicted gene 9805
mm10_v2_chr16_-_91618986_91619026	0.615164	Aire	ENSMUST00000143058.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000049244.8|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000169982.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28 	ENSMUST00000133731.1|Dnajc28|ENSMUSG00000039763.9|DnaJ (Hsp40) homolog, subfamily C, member 28
mm10_v2_chr1_+_65186727_65186750	0.614727	Aire	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr5_+_130369420_130369476	0.611822	Aire	ENSMUST00000086029.3|Caln1|ENSMUSG00000060371.6|calneuron 1
mm10_v2_chr10_+_58446845_58446928	0.604236	Aire	ENSMUST00000003310.5|Ranbp2|ENSMUSG00000003226.6|RAN binding protein 2
mm10_v2_chr12_+_36157124_36157238	0.594596	Aire	ENSMUST00000041640.3|Ankmy2|ENSMUSG00000036188.3|ankyrin repeat and MYND domain containing 2
mm10_v2_chr5_-_105343929_105343929	0.594136	Aire	ENSMUST00000183149.1|Gbp11|ENSMUSG00000098049.1|guanylate binding protein 11
mm10_v2_chr12_+_84052114_84052145	0.592251	Aire	ENSMUST00000120927.1|Acot3|ENSMUSG00000021228.8|acyl-CoA thioesterase 3
mm10_v2_chr5_+_140735526_140735567	0.583054	Aire	ENSMUST00000120630.2|Amz1|ENSMUSG00000050022.10|archaelysin family metallopeptidase 1
mm10_v2_chr3_+_89715016_89715084	0.527501	Aire	ENSMUST00000098924.2|Adar|ENSMUSG00000027951.10|adenosine deaminase, RNA-specific
mm10_v2_chr18_+_37725706_37725754	0.521072	Aire	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr9_+_109054839_109054871	0.518351	Aire	ENSMUST00000154184.1|Shisa5|ENSMUSG00000025647.10|shisa homolog 5 (Xenopus laevis)
mm10_v2_chr7_+_45896941_45897101	0.510244	Aire	ENSMUST00000069772.7|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143 	ENSMUST00000107716.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr3_-_89411781_89411894	0.503014	Aire	ENSMUST00000107429.3|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000129308.2|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000107426.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000050398.4|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast) 	ENSMUST00000162701.1|Flad1|ENSMUSG00000042642.7|RFad1, flavin adenine dinucleotide synthetase, homolog (yeast)
mm10_v2_chr15_+_101266839_101266859	0.476909	Aire	ENSMUST00000023779.6|Nr4a1|ENSMUSG00000023034.6|nuclear receptor subfamily 4, group A, member 1
mm10_v2_chr2_+_175283298_175283298	0.472852	Aire	ENSMUST00000098998.3|Gm14440|ENSMUSG00000078901.2|predicted gene 14440
mm10_v2_chr11_-_69695802_69695872	0.459826	Aire	ENSMUST00000108649.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000174159.1|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441 	ENSMUST00000181810.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12
mm10_v2_chr14_+_124005355_124005355	0.417288	Aire	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr2_-_165400398_165400410	0.413772	Aire	ENSMUST00000029213.4|Ocstamp|ENSMUSG00000027670.4|osteoclast stimulatory transmembrane protein
mm10_v2_chr5_-_113310697_113310727	0.39997	Aire	ENSMUST00000154248.1|Sgsm1|ENSMUSG00000042216.7|small G protein signaling modulator 1
mm10_v2_chr14_-_18894255_18894282	0.396969	Aire	ENSMUST00000124353.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chr5_+_24100578_24100669	0.392861	Aire	ENSMUST00000030841.5|Klhl7|ENSMUSG00000028986.6|kelch-like 7 	ENSMUST00000163409.1|Klhl7|ENSMUSG00000028986.6|kelch-like 7
mm10_v2_chr7_+_45897429_45897534	0.389294	Aire	ENSMUST00000140243.1|Tmem143|ENSMUSG00000002781.11|transmembrane protein 143
mm10_v2_chr8_+_111643425_111643450	0.3879	Aire	ENSMUST00000077791.6|Zfp1|ENSMUSG00000055835.9|zinc finger protein 1
mm10_v2_chr4_-_19570073_19570117	0.38094	Aire	ENSMUST00000029885.4|Cpne3|ENSMUSG00000028228.5|copine III
mm10_v2_chr14_+_21481428_21481439	0.370936	Aire	ENSMUST00000182996.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr13_+_49504774_49504816	0.366459	Aire	ENSMUST00000051504.7|Ecm2|ENSMUSG00000043631.7|extracellular matrix protein 2, female organ and adipocyte specific
mm10_v2_chr2_+_176431829_176431829	0.334927	Aire	ENSMUST00000172025.1|Gm14435|ENSMUSG00000089951.2|predicted gene 14435
mm10_v2_chr2_-_134644125_134644145	0.331443	Aire	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr13_-_62371936_62371936	0.323449	Aire	ENSMUST00000107989.3|Gm3604|ENSMUSG00000094942.1|predicted gene 3604
mm10_v2_chrX_-_38576166_38576187	0.31703	Aire	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr2_+_172248492_172248492	0.291567	Aire	ENSMUST00000038532.1|Mc3r|ENSMUSG00000038537.1|melanocortin 3 receptor
mm10_v2_chr12_-_36156781_36156825	0.281224	Aire	ENSMUST00000020856.4|Bzw2|ENSMUSG00000020547.4|basic leucine zipper and W2 domains 2
mm10_v2_chr2_-_121473993_121474067	0.273712	Aire	ENSMUST00000056732.3|Mfap1b|ENSMUSG00000048222.3|microfibrillar-associated protein 1B
mm10_v2_chr2_-_94010729_94010764	0.228007	Aire	ENSMUST00000040005.6|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli) 	ENSMUST00000126378.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr16_-_36874806_36874862	0.190098	Aire	ENSMUST00000075946.5|Eaf2|ENSMUSG00000022838.7|ELL associated factor 2
mm10_v2_chr4_+_154869585_154869636	0.186091	Aire	ENSMUST00000079269.7|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000163732.1|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1 	ENSMUST00000080559.6|Mmel1|ENSMUSG00000058183.8|membrane metallo-endopeptidase-like 1
mm10_v2_chr10_+_53337686_53337724	0.180077	Aire	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr6_+_126939957_126939988	0.177016	Aire	ENSMUST00000032497.3|D6Wsu163e|ENSMUSG00000030347.3|DNA segment, Chr 6, Wayne State University 163, expressed
mm10_v2_chr9_-_53667429_53667521	0.161342	Aire	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chr11_-_69696058_69696102	0.157359	Aire	ENSMUST00000180587.1|Tnfsf12|ENSMUSG00000097328.1|tumor necrosis factor (ligand) superfamily, member 12 	ENSMUST00000094070.4|BC096441|ENSMUSG00000018752.13|cDNA sequence BC096441
mm10_v2_chr19_+_3323301_3323339	0.151345	Aire	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr9_-_113708209_113708259	0.145324	Aire	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr10_+_52358767_52358767	0.140969	Aire	ENSMUST00000180473.1|Gm26741|ENSMUSG00000097704.1|predicted gene, 26741
mm10_v2_chr5_+_29378604_29378699	0.133794	Aire	ENSMUST00000181005.1|4632411P08Rik|ENSMUSG00000097561.1|RIKEN cDNA 4632411P08 gene
mm10_v2_chr7_-_141434532_141434605	0.129117	Aire	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr8_-_31739763_31739763	0.122774	Aire	ENSMUST00000178878.1|Gm5117|ENSMUSG00000093862.1|predicted gene 5117
mm10_v2_chr7_+_60155538_60155538	0.11444	Aire	ENSMUST00000057611.4|Gm7367|ENSMUSG00000047370.4|predicted pseudogene 7367
mm10_v2_chr4_+_42714926_42714926	0.101278	Aire	ENSMUST00000178454.1|Gm21955|ENSMUSG00000095375.1|predicted gene, 21955
mm10_v2_chrX_-_38576189_38576204	0.0799535	Aire	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr7_-_103741322_103741322	0.0668648	Aire	ENSMUST00000051346.2|Olfr629|ENSMUSG00000047545.2|olfactory receptor 629
mm10_v2_chr2_-_94010807_94010823	0.0631478	Aire	ENSMUST00000111240.1|Alkbh3|ENSMUSG00000040174.8|alkB, alkylation repair homolog 3 (E. coli)
mm10_v2_chr17_-_6961156_6961156	0.063117	Aire	ENSMUST00000063683.6|Tagap1|ENSMUSG00000052031.7|T cell activation GTPase activating protein 1
mm10_v2_chr11_-_28584260_28584324	0.0586689	Aire	ENSMUST00000093253.3|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000109502.2|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A 	ENSMUST00000042534.8|Ccdc85a|ENSMUSG00000032878.10|coiled-coil domain containing 85A
mm10_v2_chr3_+_88835231_88835231	0.0531583	Aire	ENSMUST00000107498.2|Gon4l|ENSMUSG00000054199.10|gon-4-like (C.elegans)
mm10_v2_chr1_+_44119952_44119985	0.0497653	Aire	ENSMUST00000114709.2|Bivm|ENSMUSG00000041684.5|basic, immunoglobulin-like variable motif containing
mm10_v2_chr7_-_121981669_121981711	0.0488263	Aire	ENSMUST00000057576.7|Cog7|ENSMUSG00000034951.9|component of oligomeric golgi complex 7
mm10_v2_chr15_+_10981747_10981765	0.048661	Aire	ENSMUST00000070877.5|Amacr|ENSMUSG00000022244.6|alpha-methylacyl-CoA racemase
mm10_v2_chr8_-_109962127_109962213	0.0486299	Aire	ENSMUST00000001722.7|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3 	ENSMUST00000051430.6|Marveld3|ENSMUSG00000001672.8|MARVEL (membrane-associating) domain containing 3
mm10_v2_chr4_+_11758147_11758220	0.0484394	Aire	ENSMUST00000029871.5|Cdh17|ENSMUSG00000028217.5|cadherin 17 	ENSMUST00000108303.1|Cdh17|ENSMUSG00000028217.5|cadherin 17
mm10_v2_chr12_+_4843303_4843419	0.0238754	Aire	ENSMUST00000053034.4|BC068281|ENSMUSG00000051721.4|cDNA sequence BC068281
mm10_v2_chr9_-_108263706_108263819	0.0147725	Aire	ENSMUST00000171412.1|Dag1|ENSMUSG00000039952.9|dystroglycan 1
