mm10_v2_chr4_+_148039097_148039190	2.45882	Bhlhe40	ENSMUST00000141283.1|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr4_-_148038769_148038821	1.93644	Bhlhe40	ENSMUST00000030879.5|Clcn6|ENSMUSG00000029016.7|chloride channel 6 	ENSMUST00000137724.1|Clcn6|ENSMUSG00000029016.7|chloride channel 6
mm10_v2_chr4_+_148039035_148039087	1.91765	Bhlhe40	ENSMUST00000097788.4|Mthfr|ENSMUSG00000029009.11|5,10-methylenetetrahydrofolate reductase
mm10_v2_chr7_+_121707189_121707189	1.60441	Bhlhe40	ENSMUST00000065310.2|1700069B07Rik|ENSMUSG00000053081.2|RIKEN cDNA 1700069B07 gene
mm10_v2_chr2_+_30286406_30286442	1.1756	Bhlhe40	ENSMUST00000138666.1|Nup188|ENSMUSG00000052533.8|nucleoporin 188 	ENSMUST00000113634.2|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr16_-_44139630_44139766	1.11515	Bhlhe40	ENSMUST00000137557.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000147025.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr16_-_44139003_44139026	1.10544	Bhlhe40	ENSMUST00000124102.1|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr5_-_123572976_123573031	1.0354	Bhlhe40	ENSMUST00000031388.8|Vps33a|ENSMUSG00000029434.8|vacuolar protein sorting 33A (yeast)
mm10_v2_chr5_+_65199691_65199735	0.952923	Bhlhe40	ENSMUST00000041892.8|Wdr19|ENSMUSG00000037890.9|WD repeat domain 19
mm10_v2_chr12_-_79296266_79296310	0.93331	Bhlhe40	ENSMUST00000021547.6|Zfyve26|ENSMUSG00000066440.4|zinc finger, FYVE domain containing 26
mm10_v2_chr12_-_3426700_3426782	0.84524	Bhlhe40	ENSMUST00000180149.1|1110002L01Rik|ENSMUSG00000071456.2|RIKEN cDNA 1110002L01 gene
mm10_v2_chr2_+_30286383_30286397	0.801006	Bhlhe40	ENSMUST00000064447.5|Nup188|ENSMUSG00000052533.8|nucleoporin 188
mm10_v2_chr8_+_85036906_85036925	0.713689	Bhlhe40	ENSMUST00000093360.4|Tnpo2|ENSMUSG00000031691.7|transportin 2 (importin 3, karyopherin beta 2b)
mm10_v2_chr11_-_75454656_75454721	0.666703	Bhlhe40	ENSMUST00000173320.1|Wdr81|ENSMUSG00000045374.12|WD repeat domain 81
mm10_v2_chr7_-_35802968_35803007	0.656855	Bhlhe40	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr8_+_85037151_85037210	0.653684	Bhlhe40	ENSMUST00000166592.1|Tnpo2|ENSMUSG00000031691.7|transportin 2 (importin 3, karyopherin beta 2b)
mm10_v2_chr7_+_35802593_35802593	0.651635	Bhlhe40	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr1_-_152766323_152766352	0.619966	Bhlhe40	ENSMUST00000111857.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr16_+_8830093_8830104	0.61377	Bhlhe40	ENSMUST00000023150.5|1810013L24Rik|ENSMUSG00000022507.5|RIKEN cDNA 1810013L24 gene
mm10_v2_chr1_-_152766281_152766319	0.561019	Bhlhe40	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr16_+_5050012_5050122	0.549652	Bhlhe40	ENSMUST00000052449.5|Ubn1|ENSMUSG00000039473.7|ubinuclein 1
mm10_v2_chr11_+_55204319_55204386	0.547824	Bhlhe40	ENSMUST00000108872.2|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000147506.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1 	ENSMUST00000020499.7|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr4_-_141790891_141790931	0.545411	Bhlhe40	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr7_-_126583523_126583578	0.528695	Bhlhe40	ENSMUST00000125508.1|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000147086.1|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000150587.1|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chrX_-_152327430_152327495	0.453194	Bhlhe40	ENSMUST00000181635.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000141922.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000154085.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000148326.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000135115.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene 	ENSMUST00000149098.1|2900056M20Rik|ENSMUSG00000087403.2|RIKEN cDNA 2900056M20 gene
mm10_v2_chr9_+_108002501_108002680	0.431161	Bhlhe40	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr12_+_86947343_86947430	0.418052	Bhlhe40	ENSMUST00000038369.4|2310044G17Rik|ENSMUSG00000034157.6|RIKEN cDNA 2310044G17 gene
mm10_v2_chr10_+_79854658_79854674	0.373881	Bhlhe40	ENSMUST00000171599.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1 	ENSMUST00000095457.4|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr3_-_95106907_95106930	0.371568	Bhlhe40	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr7_+_82648595_82648653	0.37001	Bhlhe40	ENSMUST00000141726.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000179489.1|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1 	ENSMUST00000039881.3|Eftud1|ENSMUSG00000038563.7|elongation factor Tu GTP binding domain containing 1
mm10_v2_chr2_-_30286312_30286354	0.362523	Bhlhe40	ENSMUST00000100219.3|Dolk|ENSMUSG00000075419.3|dolichol kinase
mm10_v2_chr10_+_79854618_79854640	0.352526	Bhlhe40	ENSMUST00000165704.1|Ptbp1|ENSMUSG00000006498.10|polypyrimidine tract binding protein 1
mm10_v2_chr16_-_44139196_44139305	0.344358	Bhlhe40	ENSMUST00000063661.6|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A 	ENSMUST00000114666.2|Atp6v1a|ENSMUSG00000052459.7|ATPase, H+ transporting, lysosomal V1 subunit A
mm10_v2_chr4_-_137048695_137048807	0.344136	Bhlhe40	ENSMUST00000049583.7|Zbtb40|ENSMUSG00000060862.9|zinc finger and BTB domain containing 40
mm10_v2_chr2_+_166805506_166805605	0.343284	Bhlhe40	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr18_+_31609512_31609512	0.333038	Bhlhe40	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr3_-_95106779_95106897	0.332136	Bhlhe40	ENSMUST00000005768.7|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107232.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha 	ENSMUST00000107236.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr9_-_97111117_97111159	0.3299	Bhlhe40	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr6_+_72097561_72097630	0.325055	Bhlhe40	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr9_-_44361625_44361670	0.304809	Bhlhe40	ENSMUST00000034644.8|Vps11|ENSMUSG00000032127.8|vacuolar protein sorting 11 (yeast)
mm10_v2_chr7_+_128744870_128745020	0.29791	Bhlhe40	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr11_+_97450136_97450180	0.286519	Bhlhe40	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr17_-_12769605_12769700	0.271896	Bhlhe40	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr16_+_5233615_5233653	0.266805	Bhlhe40	ENSMUST00000100196.2|Alg1|ENSMUSG00000039427.8|asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase) 	ENSMUST00000049207.8|Alg1|ENSMUSG00000039427.8|asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)
mm10_v2_chr4_-_48473403_48473459	0.265154	Bhlhe40	ENSMUST00000164866.1|Tex10|ENSMUSG00000028345.9|testis expressed gene 10 	ENSMUST00000030030.8|Tex10|ENSMUSG00000028345.9|testis expressed gene 10
mm10_v2_chr12_+_3426857_3426931	0.256699	Bhlhe40	ENSMUST00000111215.3|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000092003.5|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000144247.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila) 	ENSMUST00000153102.2|Asxl2|ENSMUSG00000037486.11|additional sex combs like 2 (Drosophila)
mm10_v2_chr3_-_90052463_90052521	0.256277	Bhlhe40	ENSMUST00000029553.9|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000064639.8|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000090908.6|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like
mm10_v2_chr12_-_84450944_84451018	0.244853	Bhlhe40	ENSMUST00000085192.5|Aldh6a1|ENSMUSG00000021238.10|aldehyde dehydrogenase family 6, subfamily A1
mm10_v2_chr6_+_116338013_116338083	0.242807	Bhlhe40	ENSMUST00000079012.6|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8 	ENSMUST00000101032.3|March8|ENSMUSG00000025702.9|membrane-associated ring finger (C3HC4) 8
mm10_v2_chr18_-_20896078_20896078	0.237811	Bhlhe40	ENSMUST00000025177.6|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8 	ENSMUST00000097658.1|Trappc8|ENSMUSG00000033382.7|trafficking protein particle complex 8
mm10_v2_chr6_+_17693905_17693947	0.21792	Bhlhe40	ENSMUST00000115420.1|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr11_-_110095937_110095969	0.211955	Bhlhe40	ENSMUST00000106664.3|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000046223.7|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a 	ENSMUST00000106662.1|Abca8a|ENSMUSG00000041828.9|ATP-binding cassette, sub-family A (ABC1), member 8a
mm10_v2_chr11_+_75348433_75348560	0.211379	Bhlhe40	ENSMUST00000044530.2|Smyd4|ENSMUSG00000018809.2|SET and MYND domain containing 4
mm10_v2_chr6_+_17693965_17693994	0.195779	Bhlhe40	ENSMUST00000115419.1|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr3_-_107333289_107333289	0.195654	Bhlhe40	ENSMUST00000061772.9|Rbm15|ENSMUSG00000048109.9|RNA binding motif protein 15
mm10_v2_chr5_+_123252087_123252136	0.190776	Bhlhe40	ENSMUST00000121964.1|Wdr66|ENSMUSG00000029442.12|WD repeat domain 66
mm10_v2_chr8_+_111033890_111033932	0.168194	Bhlhe40	ENSMUST00000034441.7|Aars|ENSMUSG00000031960.8|alanyl-tRNA synthetase
mm10_v2_chr16_-_5049882_5049910	0.165795	Bhlhe40	ENSMUST00000023189.7|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis) 	ENSMUST00000115844.1|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis)
mm10_v2_chr7_+_27195781_27195885	0.157835	Bhlhe40	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr10_+_78574492_78574545	0.139386	Bhlhe40	ENSMUST00000105384.3|Ilvbl|ENSMUSG00000032763.10|ilvB (bacterial acetolactate synthase)-like
mm10_v2_chr3_+_96727611_96727620	0.139039	Bhlhe40	ENSMUST00000029740.9|Rnf115|ENSMUSG00000028098.9|ring finger protein 115
mm10_v2_chr16_-_92466081_92466187	0.139026	Bhlhe40	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr8_+_25601591_25601607	0.136599	Bhlhe40	ENSMUST00000155861.1|Whsc1l1|ENSMUSG00000054823.9|Wolf-Hirschhorn syndrome candidate 1-like 1 (human)
mm10_v2_chr17_+_70561739_70561787	0.131942	Bhlhe40	ENSMUST00000097288.2|Dlgap1|ENSMUSG00000003279.10|discs, large (Drosophila) homolog-associated protein 1
mm10_v2_chr13_-_48625571_48625594	0.117227	Bhlhe40	ENSMUST00000035824.9|Ptpdc1|ENSMUSG00000038042.9|protein tyrosine phosphatase domain containing 1
mm10_v2_chrX_-_7188713_7188743	0.115657	Bhlhe40	ENSMUST00000004428.7|Clcn5|ENSMUSG00000004317.8|chloride channel 5
mm10_v2_chr19_+_29522263_29522341	0.114165	Bhlhe40	ENSMUST00000043610.6|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene 	ENSMUST00000162184.1|C030046E11Rik|ENSMUSG00000038658.9|RIKEN cDNA C030046E11 gene
mm10_v2_chr3_+_89202916_89202962	0.0968561	Bhlhe40	ENSMUST00000077367.4|Gba|ENSMUSG00000028048.5|glucosidase, beta, acid 	ENSMUST00000167998.1|Gba|ENSMUSG00000028048.5|glucosidase, beta, acid
mm10_v2_chr14_+_26579535_26579612	0.0933878	Bhlhe40	ENSMUST00000037585.7|Dennd6a|ENSMUSG00000040818.7|DENN/MADD domain containing 6A
mm10_v2_chr6_+_17694005_17694032	0.0929967	Bhlhe40	ENSMUST00000081635.6|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000052113.5|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr11_+_3649494_3649494	0.0900932	Bhlhe40	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr6_+_17694167_17694179	0.0789537	Bhlhe40	ENSMUST00000115418.1|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chr1_+_155158703_155158776	0.0746124	Bhlhe40	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr18_-_31609893_31609927	0.0644819	Bhlhe40	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
mm10_v2_chr3_-_96727453_96727505	0.0610228	Bhlhe40	ENSMUST00000141377.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C 	ENSMUST00000125183.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr3_-_10440054_10440127	0.0577136	Bhlhe40	ENSMUST00000099223.4|Snx16|ENSMUSG00000027534.10|sorting nexin 16 	ENSMUST00000029047.6|Snx16|ENSMUSG00000027534.10|sorting nexin 16
mm10_v2_chr19_-_7241216_7241226	0.0513711	Bhlhe40	ENSMUST00000025675.9|Naa40|ENSMUSG00000024764.9|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)
mm10_v2_chr11_-_75348261_75348324	0.0464615	Bhlhe40	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr6_-_35133731_35133742	0.0321213	Bhlhe40	ENSMUST00000114993.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000114989.2|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4 	ENSMUST00000044163.6|Cnot4|ENSMUSG00000038784.7|CCR4-NOT transcription complex, subunit 4
mm10_v2_chr8_+_3500451_3500524	0.0313927	Bhlhe40	ENSMUST00000004683.6|Mcoln1|ENSMUSG00000004567.9|mucolipin 1 	ENSMUST00000160338.1|Mcoln1|ENSMUSG00000004567.9|mucolipin 1
mm10_v2_chr10_-_80139347_80139370	0.0231811	Bhlhe40	ENSMUST00000105369.1|Dos|ENSMUSG00000035640.12|downstream of Stk11
mm10_v2_chrX_-_136203637_136203926	0.021549	Bhlhe40	ENSMUST00000151592.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000131510.1|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5 	ENSMUST00000066819.4|Tceal5|ENSMUSG00000054034.4|transcription elongation factor A (SII)-like 5
mm10_v2_chr8_-_84846860_84846934	0.0170244	Bhlhe40	ENSMUST00000003912.6|Calr|ENSMUSG00000003814.8|calreticulin
