mm10_v2_chr6_-_23248264_23248390	1.55101	Brca1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr11_+_44617310_44617336	0.547831	Brca1	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr5_-_25223153_25223153	0.452134	Brca1	ENSMUST00000066954.1|E130116L18Rik|ENSMUSG00000054116.1|RIKEN cDNA E130116L18 gene
mm10_v2_chr18_-_47333311_47333373	0.436604	Brca1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr16_-_16829276_16829349	0.424501	Brca1	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr7_-_144939823_144939869	0.391079	Brca1	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr10_-_42583628_42583639	0.376376	Brca1	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr17_+_71204647_71204693	0.37301	Brca1	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr2_-_105399286_105399319	0.367716	Brca1	ENSMUST00000006128.6|Rcn1|ENSMUSG00000005973.6|reticulocalbin 1
mm10_v2_chr1_-_75278345_75278440	0.35912	Brca1	ENSMUST00000039534.4|Resp18|ENSMUSG00000033061.9|regulated endocrine-specific protein 18
mm10_v2_chr13_-_49320219_49320311	0.35563	Brca1	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr19_-_24225015_24225033	0.352482	Brca1	ENSMUST00000099558.4|Tjp2|ENSMUSG00000024812.9|tight junction protein 2
mm10_v2_chr11_+_59306920_59306935	0.346025	Brca1	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr11_-_106998483_106998491	0.341399	Brca1	ENSMUST00000124541.1|Kpna2|ENSMUSG00000018362.8|karyopherin (importin) alpha 2
mm10_v2_chr1_+_192190771_192190821	0.340304	Brca1	ENSMUST00000078470.5|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1 	ENSMUST00000110844.1|Kcnh1|ENSMUSG00000058248.6|potassium voltage-gated channel, subfamily H (eag-related), member 1
mm10_v2_chr6_-_125191535_125191620	0.313899	Brca1	ENSMUST00000043848.4|Ncapd2|ENSMUSG00000038252.7|non-SMC condensin I complex, subunit D2
mm10_v2_chr12_+_4082596_4082638	0.280373	Brca1	ENSMUST00000049584.5|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr17_-_70853482_70853546	0.275305	Brca1	ENSMUST00000118283.1|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr16_+_30065333_30065351	0.275108	Brca1	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr18_+_7869707_7869737	0.271696	Brca1	ENSMUST00000166062.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000169010.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr3_-_138131356_138131381	0.267643	Brca1	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr4_-_116708312_116708406	0.266837	Brca1	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr3_-_61365951_61365951	0.264014	Brca1	ENSMUST00000066298.2|B430305J03Rik|ENSMUSG00000053706.2|RIKEN cDNA B430305J03 gene
mm10_v2_chr4_-_131838231_131838291	0.249853	Brca1	ENSMUST00000030741.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U 	ENSMUST00000105987.2|Ptpru|ENSMUSG00000028909.11|protein tyrosine phosphatase, receptor type, U
mm10_v2_chr11_+_6291660_6291687	0.249438	Brca1	ENSMUST00000101554.2|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENSMUST00000093350.3|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr15_-_97020322_97020336	0.229991	Brca1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr3_+_87930256_87930350	0.22861	Brca1	ENSMUST00000055984.6|Isg20l2|ENSMUSG00000048039.8|interferon stimulated exonuclease gene 20-like 2
mm10_v2_chr3_+_96172327_96172338	0.227481	Brca1	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr3_+_87906321_87906356	0.220586	Brca1	ENSMUST00000005017.8|Hdgf|ENSMUSG00000004897.10|hepatoma-derived growth factor
mm10_v2_chr11_-_98625661_98625661	0.21662	Brca1	ENSMUST00000104933.1|Gm12355|ENSMUSG00000078134.1|predicted gene 12355
mm10_v2_chrM_+_8600_8616	0.21585	Brca1	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr17_+_35841668_35841683	0.214724	Brca1	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr2_-_155945282_155945367	0.213579	Brca1	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chr19_-_10203880_10204169	0.201903	Brca1	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chrM_+_9452_9468	0.20021	Brca1	ENSMUST00000082411.1|mt-Nd3|ENSMUSG00000064360.1|mitochondrially encoded NADH dehydrogenase 3
mm10_v2_chr13_-_98890974_98891035	0.196117	Brca1	ENSMUST00000179301.1|Tnpo1|ENSMUSG00000009470.10|transportin 1 	ENSMUST00000179271.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr12_+_52097737_52097775	0.193676	Brca1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr11_+_6291607_6291655	0.191637	Brca1	ENSMUST00000003461.8|Ogdh|ENSMUSG00000020456.11|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
mm10_v2_chr5_-_138187177_138187237	0.191062	Brca1	ENSMUST00000110937.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000139276.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000048698.7|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000123415.1|Taf6|ENSMUSG00000036980.7|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr6_-_122340499_122340510	0.187964	Brca1	ENSMUST00000160843.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr12_-_12940600_12940616	0.184283	Brca1	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr1_-_46854046_46854079	0.181333	Brca1	ENSMUST00000027131.4|Slc39a10|ENSMUSG00000025986.5|solute carrier family 39 (zinc transporter), member 10
mm10_v2_chr5_-_115158169_115158180	0.180751	Brca1	ENSMUST00000053271.5|Mlec|ENSMUSG00000048578.7|malectin 	ENSMUST00000112121.1|Mlec|ENSMUSG00000048578.7|malectin
mm10_v2_chr17_+_6430112_6430204	0.180107	Brca1	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr17_-_47611449_47611544	0.179647	Brca1	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr7_-_102100227_102100258	0.178394	Brca1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr9_-_37657189_37657312	0.177605	Brca1	ENSMUST00000117654.1|Tbrg1|ENSMUSG00000011114.11|transforming growth factor beta regulated gene 1
mm10_v2_chr12_-_10900296_10900318	0.173124	Brca1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr7_+_129591859_129591871	0.168475	Brca1	ENSMUST00000084519.5|Wdr11|ENSMUSG00000042055.7|WD repeat domain 11
mm10_v2_chr19_+_44562841_44562879	0.167099	Brca1	ENSMUST00000040455.4|Hif1an|ENSMUSG00000036450.4|hypoxia-inducible factor 1, alpha subunit inhibitor
mm10_v2_chr8_+_84872105_84872112	0.16469	Brca1	ENSMUST00000136026.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2 	ENSMUST00000170296.1|Syce2|ENSMUSG00000003824.6|synaptonemal complex central element protein 2
mm10_v2_chr13_-_100775844_100775899	0.157804	Brca1	ENSMUST00000075550.3|Cenph|ENSMUSG00000045273.8|centromere protein H
mm10_v2_chr17_-_6655939_6655939	0.15586	Brca1	ENSMUST00000179554.1|Dynlt1f|ENSMUSG00000095677.1|dynein light chain Tctex-type 1F
mm10_v2_chr2_-_34870921_34870980	0.154106	Brca1	ENSMUST00000028225.5|Psmd5|ENSMUSG00000026869.6|proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
mm10_v2_chr4_+_133176336_133176371	0.153446	Brca1	ENSMUST00000105912.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr8_-_47990535_47990577	0.153076	Brca1	ENSMUST00000057561.7|Wwc2|ENSMUSG00000031563.7|WW, C2 and coiled-coil domain containing 2
mm10_v2_chr1_+_74791516_74791516	0.151686	Brca1	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr19_-_7295394_7295468	0.151584	Brca1	ENSMUST00000025921.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr19_+_46152505_46152514	0.145116	Brca1	ENSMUST00000026254.7|Gbf1|ENSMUSG00000025224.8|golgi-specific brefeldin A-resistance factor 1
mm10_v2_chr14_-_67715585_67715681	0.145066	Brca1	ENSMUST00000163100.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000132705.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2 	ENSMUST00000124045.1|Cdca2|ENSMUSG00000048922.12|cell division cycle associated 2
mm10_v2_chr17_+_35841491_35841515	0.144471	Brca1	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr9_+_88327592_88327622	0.143724	Brca1	ENSMUST00000034992.6|Nt5e|ENSMUSG00000032420.6|5' nucleotidase, ecto
mm10_v2_chr7_+_51878967_51879000	0.142727	Brca1	ENSMUST00000051912.6|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr8_+_25017211_25017305	0.142588	Brca1	ENSMUST00000033961.5|Tm2d2|ENSMUSG00000031556.5|TM2 domain containing 2
mm10_v2_chr18_+_36952621_36952766	0.140998	Brca1	ENSMUST00000115661.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chrX_+_71663665_71663671	0.138941	Brca1	ENSMUST00000070449.5|Gpr50|ENSMUSG00000056380.7|G-protein-coupled receptor 50
mm10_v2_chr19_-_32466575_32466575	0.132557	Brca1	ENSMUST00000078034.3|Rpl9-ps6|ENSMUSG00000062456.3|ribosomal protein L9, pseudogene 6
mm10_v2_chr8_+_26977336_26977398	0.130964	Brca1	ENSMUST00000154256.1|Zfp703|ENSMUSG00000085795.1|zinc finger protein 703 	ENSMUST00000127097.1|Zfp703|ENSMUSG00000085795.1|zinc finger protein 703
mm10_v2_chr3_-_100489324_100489354	0.128694	Brca1	ENSMUST00000061455.8|Fam46c|ENSMUSG00000044468.8|family with sequence similarity 46, member C
mm10_v2_chr9_-_109082372_109082414	0.127963	Brca1	ENSMUST00000167504.1|Tma7|ENSMUSG00000091537.1|translational machinery associated 7 homolog (S. cerevisiae)
mm10_v2_chr16_-_11066141_11066165	0.125696	Brca1	ENSMUST00000162323.1|Litaf|ENSMUSG00000022500.8|LPS-induced TN factor
mm10_v2_chr15_-_27681498_27681554	0.124241	Brca1	ENSMUST00000100739.3|Fam105a|ENSMUSG00000056069.8|family with sequence similarity 105, member A
mm10_v2_chr2_+_167932327_167932379	0.122967	Brca1	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr15_-_82016134_82016170	0.120052	Brca1	ENSMUST00000152227.1|Desi1|ENSMUSG00000022472.10|desumoylating isopeptidase 1
mm10_v2_chr6_-_108185552_108185587	0.119819	Brca1	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr4_+_100776664_100776692	0.119512	Brca1	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chr2_+_174330006_174330126	0.117938	Brca1	ENSMUST00000109085.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109087.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus 	ENSMUST00000109084.1|Gnas|ENSMUSG00000027523.13|GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus
mm10_v2_chr11_+_82035569_82035585	0.117169	Brca1	ENSMUST00000000193.5|Ccl2|ENSMUSG00000035385.5|chemokine (C-C motif) ligand 2
mm10_v2_chr10_-_33624587_33624769	0.116233	Brca1	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chrX_+_169685191_169685250	0.115092	Brca1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr8_-_70700070_70700088	0.114677	Brca1	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr15_+_102460076_102460108	0.10943	Brca1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr7_+_82337218_82337218	0.106261	Brca1	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr11_-_30198232_30198261	0.106216	Brca1	ENSMUST00000102838.3|Sptbn1|ENSMUSG00000020315.12|spectrin beta, non-erythrocytic 1
mm10_v2_chr12_+_4082574_4082594	0.105971	Brca1	ENSMUST00000020986.7|Dnajc27|ENSMUSG00000020657.9|DnaJ (Hsp40) homolog, subfamily C, member 27
mm10_v2_chr12_-_108894116_108894174	0.105113	Brca1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr10_-_77902467_77902536	0.102011	Brca1	ENSMUST00000057608.4|Lrrc3|ENSMUSG00000051652.4|leucine rich repeat containing 3
mm10_v2_chr2_-_155582656_155582668	0.10173	Brca1	ENSMUST00000126322.1|Gss|ENSMUSG00000027610.11|glutathione synthetase
mm10_v2_chr4_+_86053887_86053987	0.100647	Brca1	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr14_-_54864055_54864158	0.100312	Brca1	ENSMUST00000142283.2|Homez|ENSMUSG00000057156.9|homeodomain leucine zipper-encoding gene
mm10_v2_chr10_-_13388830_13388970	0.0998035	Brca1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr2_+_68104671_68104671	0.0988254	Brca1	ENSMUST00000042456.3|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr6_-_120357342_120357400	0.0935051	Brca1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr7_-_113369326_113369395	0.0931877	Brca1	ENSMUST00000047091.7|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10 	ENSMUST00000119278.1|Btbd10|ENSMUSG00000038187.8|BTB (POZ) domain containing 10
mm10_v2_chr2_-_25224653_25224702	0.0925958	Brca1	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr5_+_143651222_143651246	0.0921589	Brca1	ENSMUST00000110727.1|Cyth3|ENSMUSG00000018001.12|cytohesin 3
mm10_v2_chr12_-_69159109_69159186	0.0908135	Brca1	ENSMUST00000037023.8|Rps29|ENSMUSG00000034892.8|ribosomal protein S29
mm10_v2_chr6_-_120357440_120357489	0.088894	Brca1	ENSMUST00000112703.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr19_+_6047081_6047104	0.0868984	Brca1	ENSMUST00000025723.8|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr5_-_135064063_135064116	0.0858694	Brca1	ENSMUST00000111205.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22 	ENSMUST00000141309.1|Wbscr22|ENSMUSG00000005378.11|Williams Beuren syndrome chromosome region 22
mm10_v2_chr12_-_99393010_99393090	0.0853868	Brca1	ENSMUST00000177451.1|Foxn3|ENSMUSG00000033713.5|forkhead box N3
mm10_v2_chr7_+_27553244_27553302	0.0839714	Brca1	ENSMUST00000067386.7|2310022A10Rik|ENSMUSG00000049643.9|RIKEN cDNA 2310022A10 gene
mm10_v2_chr3_-_51277470_51277514	0.0835547	Brca1	ENSMUST00000108053.2|Elf2|ENSMUSG00000037174.12|E74-like factor 2 	ENSMUST00000108051.1|Elf2|ENSMUSG00000037174.12|E74-like factor 2
mm10_v2_chr2_-_9883993_9883993	0.0827886	Brca1	ENSMUST00000114915.2|9230102O04Rik|ENSMUSG00000079602.2|RIKEN cDNA 9230102O04 gene
mm10_v2_chr13_+_100651607_100651631	0.081581	Brca1	ENSMUST00000167256.1|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_102230127_102230166	0.0810644	Brca1	ENSMUST00000107150.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000156337.1|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107151.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5 	ENSMUST00000107152.2|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr19_+_36083696_36083736	0.0802149	Brca1	ENSMUST00000025714.7|Rpp30|ENSMUSG00000024800.7|ribonuclease P/MRP 30 subunit
mm10_v2_chr3_-_90433603_90433636	0.0800214	Brca1	ENSMUST00000029542.5|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3 	ENSMUST00000071488.3|Ints3|ENSMUSG00000027933.5|integrator complex subunit 3
mm10_v2_chr11_+_97415527_97415538	0.0786679	Brca1	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr7_-_102099932_102099943	0.0782879	Brca1	ENSMUST00000106934.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chrX_+_150589907_150589996	0.0768047	Brca1	ENSMUST00000080884.4|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr4_-_41464816_41464892	0.0765214	Brca1	ENSMUST00000108055.2|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000154535.1|Kif24|ENSMUSG00000028438.10|kinesin family member 24 	ENSMUST00000030148.5|Kif24|ENSMUSG00000028438.10|kinesin family member 24
mm10_v2_chr7_+_101896817_101896961	0.0757094	Brca1	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr7_-_17027853_17027921	0.0751951	Brca1	ENSMUST00000003183.5|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr12_+_103388656_103388723	0.0743851	Brca1	ENSMUST00000101094.2|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2 	ENSMUST00000021620.6|Otub2|ENSMUSG00000021203.9|OTU domain, ubiquitin aldehyde binding 2
mm10_v2_chr19_+_55741810_55741842	0.0719565	Brca1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr2_-_28916668_28916668	0.0710536	Brca1	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr13_+_24943144_24943164	0.0660446	Brca1	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr11_-_11890368_11890379	0.0649662	Brca1	ENSMUST00000155690.1|Ddc|ENSMUSG00000020182.10|dopa decarboxylase
mm10_v2_chr16_+_22009471_22009543	0.0647204	Brca1	ENSMUST00000023561.7|Senp2|ENSMUSG00000022855.8|SUMO/sentrin specific peptidase 2
mm10_v2_chr17_-_33685386_33685410	0.0643688	Brca1	ENSMUST00000139302.1|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000087582.5|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M 	ENSMUST00000114385.2|Hnrnpm|ENSMUSG00000059208.8|heterogeneous nuclear ribonucleoprotein M
mm10_v2_chr1_+_66386968_66386999	0.0643011	Brca1	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr13_-_98891036_98891063	0.0639954	Brca1	ENSMUST00000109399.2|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr6_-_122340525_122340561	0.0637137	Brca1	ENSMUST00000112600.2|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr7_-_17027807_17027846	0.0614369	Brca1	ENSMUST00000142597.1|Ppp5c|ENSMUSG00000003099.5|protein phosphatase 5, catalytic subunit
mm10_v2_chr11_-_102230091_102230124	0.0607225	Brca1	ENSMUST00000008999.5|Hdac5|ENSMUSG00000008855.11|histone deacetylase 5
mm10_v2_chr12_+_87266696_87266760	0.0595351	Brca1	ENSMUST00000021425.6|Ahsa1|ENSMUSG00000021037.6|AHA1, activator of heat shock protein ATPase 1
mm10_v2_chr17_-_15498263_15498276	0.0566325	Brca1	ENSMUST00000014913.9|Psmb1|ENSMUSG00000014769.9|proteasome (prosome, macropain) subunit, beta type 1
mm10_v2_chr17_-_65613521_65613555	0.0565586	Brca1	ENSMUST00000024897.8|Vapa|ENSMUSG00000024091.8|vesicle-associated membrane protein, associated protein A
mm10_v2_chr6_-_120357422_120357435	0.0558247	Brca1	ENSMUST00000032283.5|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr7_-_64872993_64873037	0.0547378	Brca1	ENSMUST00000094331.2|Ndnl2|ENSMUSG00000070520.2|necdin-like 2
mm10_v2_chr2_-_91183017_91183060	0.0544009	Brca1	ENSMUST00000066420.5|Madd|ENSMUSG00000040687.10|MAP-kinase activating death domain
mm10_v2_chr4_+_10874498_10874607	0.0542415	Brca1	ENSMUST00000080517.7|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene 	ENSMUST00000101504.2|2610301B20Rik|ENSMUSG00000059482.9|RIKEN cDNA 2610301B20 gene
mm10_v2_chr8_-_95853501_95853539	0.0534865	Brca1	ENSMUST00000040481.3|Slc38a7|ENSMUSG00000036534.5|solute carrier family 38, member 7
mm10_v2_chr13_-_95891905_95891929	0.0532462	Brca1	ENSMUST00000068603.6|Iqgap2|ENSMUSG00000021676.9|IQ motif containing GTPase activating protein 2
mm10_v2_chr14_-_61556746_61556781	0.0513957	Brca1	ENSMUST00000100496.4|Spryd7|ENSMUSG00000021930.8|SPRY domain containing 7
mm10_v2_chr5_-_21701332_21701404	0.0507545	Brca1	ENSMUST00000115217.1|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D 	ENSMUST00000060899.8|Napepld|ENSMUSG00000044968.10|N-acyl phosphatidylethanolamine phospholipase D
mm10_v2_chr1_+_182124737_182124800	0.0501162	Brca1	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr18_-_15063560_15063617	0.0484725	Brca1	ENSMUST00000168989.1|Kctd1|ENSMUSG00000036225.8|potassium channel tetramerisation domain containing 1
mm10_v2_chr13_+_100651328_100651397	0.0463885	Brca1	ENSMUST00000022135.8|Taf9|ENSMUSG00000078941.3|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor 	ENSMUST00000084721.6|Taf9|ENSMUSG00000052293.8|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr12_+_108894272_108894317	0.0462389	Brca1	ENSMUST00000167816.1|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25 	ENSMUST00000047115.7|Wdr25|ENSMUSG00000040877.9|WD repeat domain 25
mm10_v2_chr3_-_88951146_88951213	0.0445451	Brca1	ENSMUST00000173135.1|Dap3|ENSMUSG00000068921.8|death associated protein 3
mm10_v2_chr18_+_7869342_7869530	0.0422765	Brca1	ENSMUST00000092112.4|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000172018.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil 	ENSMUST00000168446.1|Wac|ENSMUSG00000024283.8|WW domain containing adaptor with coiled-coil
mm10_v2_chr1_-_170867761_170867784	0.0414328	Brca1	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chrX_+_150594420_150594478	0.0394914	Brca1	ENSMUST00000112713.2|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr6_+_115601907_115601940	0.0390518	Brca1	ENSMUST00000000449.7|Mkrn2|ENSMUSG00000000439.8|makorin, ring finger protein, 2
mm10_v2_chr13_+_42681513_42681564	0.0380647	Brca1	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chrX_+_74309089_74309161	0.0378573	Brca1	ENSMUST00000130581.1|Gdi1|ENSMUSG00000015291.4|guanosine diphosphate (GDP) dissociation inhibitor 1
mm10_v2_chr11_-_109472611_109472688	0.0375488	Brca1	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr10_-_13388753_13388774	0.036483	Brca1	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chrM_+_7759_7927	0.0364518	Brca1	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr10_-_128923948_128924035	0.0362173	Brca1	ENSMUST00000131271.1|Bloc1s1|ENSMUSG00000090247.1|biogenesis of lysosome-related organelles complex-1, subunit 1
mm10_v2_chr5_+_138187485_138187521	0.0359137	Brca1	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr13_+_93304940_93305278	0.0349866	Brca1	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr9_+_108392820_108392843	0.0345471	Brca1	ENSMUST00000035234.4|1700102P08Rik|ENSMUSG00000032611.4|RIKEN cDNA 1700102P08 gene
mm10_v2_chr9_+_82829806_82829834	0.0336001	Brca1	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr4_+_129058133_129058409	0.0312762	Brca1	ENSMUST00000030584.4|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000168461.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B 	ENSMUST00000152565.1|Rnf19b|ENSMUSG00000028793.9|ring finger protein 19B
mm10_v2_chr17_+_33909481_33909576	0.031188	Brca1	ENSMUST00000173626.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein 	ENSMUST00000174541.1|Daxx|ENSMUSG00000002307.9|Fas death domain-associated protein
mm10_v2_chr4_-_98817537_98817706	0.0295061	Brca1	ENSMUST00000102790.3|Kank4|ENSMUSG00000035407.8|KN motif and ankyrin repeat domains 4
mm10_v2_chr8_-_107263248_107263248	0.0294062	Brca1	ENSMUST00000080443.6|Rps18-ps3|ENSMUSG00000057657.3|ribosomal protein S18, pseudogene 3
mm10_v2_chr1_+_172148015_172148048	0.0286128	Brca1	ENSMUST00000074144.5|Dcaf8|ENSMUSG00000026554.10|DDB1 and CUL4 associated factor 8
mm10_v2_chr15_+_82016369_82016419	0.0280575	Brca1	ENSMUST00000069530.6|Xrcc6|ENSMUSG00000022471.7|X-ray repair complementing defective repair in Chinese hamster cells 6
mm10_v2_chr8_-_86580664_86580686	0.0277474	Brca1	ENSMUST00000131423.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12 	ENSMUST00000152438.1|Abcc12|ENSMUSG00000036872.10|ATP-binding cassette, sub-family C (CFTR/MRP), member 12
mm10_v2_chr14_+_20674311_20674371	0.0261453	Brca1	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr7_+_5080214_5080298	0.0256593	Brca1	ENSMUST00000098845.3|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000146317.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000153169.1|Epn1|ENSMUSG00000035203.9|epsin 1 	ENSMUST00000045277.6|Epn1|ENSMUSG00000035203.9|epsin 1
mm10_v2_chr2_-_152831665_152831735	0.0237232	Brca1	ENSMUST00000156688.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1 	ENSMUST00000007803.5|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr5_+_147077050_147077050	0.0231512	Brca1	ENSMUST00000050970.3|Polr1d|ENSMUSG00000029642.7|polymerase (RNA) I polypeptide D
mm10_v2_chr9_+_44773027_44773100	0.0213136	Brca1	ENSMUST00000125877.1|Ift46|ENSMUSG00000002031.5|intraflagellar transport 46
mm10_v2_chr11_+_97703394_97703455	0.0186801	Brca1	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr7_-_80947765_80947780	0.0176963	Brca1	ENSMUST00000026818.5|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000117383.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae) 	ENSMUST00000119980.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr13_+_55714624_55714650	0.0170298	Brca1	ENSMUST00000021959.9|Txndc15|ENSMUSG00000021497.9|thioredoxin domain containing 15
mm10_v2_chr17_+_7945653_7945653	0.0126816	Brca1	ENSMUST00000097423.2|Rsph3a|ENSMUSG00000073471.2|radial spoke 3A homolog (Chlamydomonas)
mm10_v2_chr15_+_10952332_10952364	0.0102644	Brca1	ENSMUST00000022853.8|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3 	ENSMUST00000110523.1|C1qtnf3|ENSMUSG00000058914.6|C1q and tumor necrosis factor related protein 3
mm10_v2_chr5_-_123666682_123666695	0.00894208	Brca1	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr7_+_16816299_16816361	0.0089169	Brca1	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr11_-_50325599_50325673	0.00884744	Brca1	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
mm10_v2_chr5_+_146833106_146833210	0.00877628	Brca1	ENSMUST00000075453.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21 	ENSMUST00000099272.2|Rpl21|ENSMUSG00000041453.6|ribosomal protein L21
mm10_v2_chrX_-_101222426_101222563	0.00862006	Brca1	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chr11_-_110251736_110251776	0.00789346	Brca1	ENSMUST00000044003.7|Abca6|ENSMUSG00000044749.7|ATP-binding cassette, sub-family A (ABC1), member 6
mm10_v2_chr14_-_61556881_61556890	0.00773919	Brca1	ENSMUST00000022497.8|Spryd7|ENSMUSG00000021930.8|SPRY domain containing 7
mm10_v2_chr7_-_80947499_80947579	0.0040704	Brca1	ENSMUST00000120285.1|Sec11a|ENSMUSG00000025724.6|SEC11 homolog A (S. cerevisiae)
mm10_v2_chr11_-_101171302_101171353	0.00393784	Brca1	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr8_-_60954726_60954790	0.00289327	Brca1	ENSMUST00000110302.1|Clcn3|ENSMUSG00000004319.9|chloride channel 3
mm10_v2_chr18_+_36793918_36793937	0.00153586	Brca1	ENSMUST00000001419.8|Zmat2|ENSMUSG00000001383.8|zinc finger, matrin type 2
mm10_v2_chr11_-_69920581_69920630	0.000520645	Brca1	ENSMUST00000108610.1|Eif5a|ENSMUSG00000078812.4|eukaryotic translation initiation factor 5A
