mm10_v2_chr10_-_92165159_92165177	2.99203	Foxk1_Foxj1	ENSMUST00000182567.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181604.2|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000181213.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr4_-_154097105_154097173	2.4731	Foxk1_Foxj1	ENSMUST00000105643.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000133533.1|Trp73|ENSMUSG00000029026.10|transformation related protein 73 	ENSMUST00000097762.4|Trp73|ENSMUSG00000029026.10|transformation related protein 73
mm10_v2_chr4_-_55532453_55532485	2.42952	Foxk1_Foxj1	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr11_+_119022962_119023104	2.42345	Foxk1_Foxj1	ENSMUST00000026662.7|Cbx2|ENSMUSG00000025577.7|chromobox 2
mm10_v2_chr10_+_97482350_97482372	2.3638	Foxk1_Foxj1	ENSMUST00000163448.2|Dcn|ENSMUSG00000019929.9|decorin
mm10_v2_chr10_-_37138863_37138937	2.1645	Foxk1_Foxj1	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr10_-_92164666_92164754	2.12542	Foxk1_Foxj1	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr9_-_100506844_100506856	2.09695	Foxk1_Foxj1	ENSMUST00000112874.3|Nck1|ENSMUSG00000032475.9|non-catalytic region of tyrosine kinase adaptor protein 1
mm10_v2_chr1_+_110099295_110099295	1.91458	Foxk1_Foxj1	ENSMUST00000134301.1|Cdh7|ENSMUSG00000026312.11|cadherin 7, type 2
mm10_v2_chr1_+_45311538_45311638	1.85844	Foxk1_Foxj1	ENSMUST00000087883.6|Col3a1|ENSMUSG00000026043.12|collagen, type III, alpha 1
mm10_v2_chr18_-_62756275_62756347	1.83229	Foxk1_Foxj1	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chrX_+_56786527_56786564	1.69023	Foxk1_Foxj1	ENSMUST00000144600.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr1_-_72212249_72212307	1.6686	Foxk1_Foxj1	ENSMUST00000048860.7|Mreg|ENSMUSG00000039395.7|melanoregulin
mm10_v2_chr3_+_131110350_131110471	1.63965	Foxk1_Foxj1	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr12_-_10900296_10900318	1.43918	Foxk1_Foxj1	ENSMUST00000085735.2|Pgk1-rs7|ENSMUSG00000066632.2|phosphoglycerate kinase-1, related sequence-7
mm10_v2_chr1_-_144177259_144177372	1.41889	Foxk1_Foxj1	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr2_+_164486455_164486655	1.37534	Foxk1_Foxj1	ENSMUST00000069385.8|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENSMUST00000143690.1|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr17_+_9422060_9422060	1.34606	Foxk1_Foxj1	ENSMUST00000076982.6|Gm17728|ENSMUSG00000072968.4|predicted gene, 17728
mm10_v2_chr16_-_22161450_22161450	1.31488	Foxk1_Foxj1	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr10_+_4611971_4612021	1.29769	Foxk1_Foxj1	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr3_+_125404292_125404340	1.28129	Foxk1_Foxj1	ENSMUST00000144344.1|Ndst4|ENSMUSG00000027971.10|N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4
mm10_v2_chr4_-_117178726_117178754	1.25702	Foxk1_Foxj1	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr12_+_111971545_111971598	1.24157	Foxk1_Foxj1	ENSMUST00000079009.5|Tdrd9|ENSMUSG00000054003.8|tudor domain containing 9
mm10_v2_chr10_+_96616998_96617015	1.20423	Foxk1_Foxj1	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr16_-_44558879_44558905	1.20217	Foxk1_Foxj1	ENSMUST00000114634.1|Boc|ENSMUSG00000022687.5|biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
mm10_v2_chr5_+_30666886_30666963	1.18754	Foxk1_Foxj1	ENSMUST00000144742.1|Cenpa|ENSMUSG00000029177.3|centromere protein A
mm10_v2_chr4_-_44710408_44710418	1.18037	Foxk1_Foxj1	ENSMUST00000134968.2|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000173821.1|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000174319.1|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000173733.1|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000172866.1|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000165417.2|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000107825.2|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000102932.3|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000107827.2|Pax5|ENSMUSG00000014030.9|paired box gene 5 	ENSMUST00000107826.2|Pax5|ENSMUSG00000014030.9|paired box gene 5
mm10_v2_chr5_-_135251209_135251242	1.14713	Foxk1_Foxj1	ENSMUST00000062572.2|Fzd9|ENSMUSG00000049551.2|frizzled homolog 9 (Drosophila)
mm10_v2_chr1_-_75046639_75046639	1.13877	Foxk1_Foxj1	ENSMUST00000152855.1|Nhej1|ENSMUSG00000026162.6|nonhomologous end-joining factor 1
mm10_v2_chr3_+_106113229_106113390	1.11195	Foxk1_Foxj1	ENSMUST00000079132.5|Chia|ENSMUSG00000062778.6|chitinase, acidic 	ENSMUST00000139086.1|Chia|ENSMUSG00000062778.6|chitinase, acidic
mm10_v2_chr3_-_100969644_100969676	1.08381	Foxk1_Foxj1	ENSMUST00000076941.5|Ttf2|ENSMUSG00000033222.10|transcription termination factor, RNA polymerase II
mm10_v2_chr4_-_108833544_108833597	1.05613	Foxk1_Foxj1	ENSMUST00000102740.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4 	ENSMUST00000102741.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr14_+_46832127_46832151	1.04983	Foxk1_Foxj1	ENSMUST00000068532.8|Cgrrf1|ENSMUSG00000055128.8|cell growth regulator with ring finger domain 1
mm10_v2_chr2_+_143915273_143915337	1.02262	Foxk1_Foxj1	ENSMUST00000103172.3|Dstn|ENSMUSG00000015932.8|destrin
mm10_v2_chr5_+_92809372_92809436	1.01575	Foxk1_Foxj1	ENSMUST00000113054.2|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chrX_+_102119447_102119490	0.994077	Foxk1_Foxj1	ENSMUST00000113627.3|Pin4|ENSMUSG00000079480.3|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)
mm10_v2_chr15_+_102459028_102459183	0.981821	Foxk1_Foxj1	ENSMUST00000164938.1|Prr13|ENSMUSG00000023048.7|proline rich 13 	ENSMUST00000023810.5|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr13_-_90905321_90905355	0.976776	Foxk1_Foxj1	ENSMUST00000109541.3|Atp6ap1l|ENSMUSG00000078958.3|ATPase, H+ transporting, lysosomal accessory protein 1-like
mm10_v2_chr11_-_58801944_58801968	0.970534	Foxk1_Foxj1	ENSMUST00000094156.4|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B 	ENSMUST00000060581.3|Fam183b|ENSMUSG00000049154.5|family with sequence similarity 183, member B
mm10_v2_chr17_+_46496753_46496809	0.954161	Foxk1_Foxj1	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr3_+_159495408_159495458	0.946527	Foxk1_Foxj1	ENSMUST00000120272.1|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a 	ENSMUST00000029825.7|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a 	ENSMUST00000106041.2|Depdc1a|ENSMUSG00000028175.9|DEP domain containing 1a
mm10_v2_chrX_+_170010744_170010744	0.94178	Foxk1_Foxj1	ENSMUST00000178789.1|Gm21887|ENSMUSG00000095562.1|predicted gene, 21887
mm10_v2_chr1_+_164312879_164312879	0.940776	Foxk1_Foxj1	ENSMUST00000086028.5|Nme7|ENSMUSG00000026575.10|NME/NM23 family member 7
mm10_v2_chr4_+_94739276_94739300	0.909873	Foxk1_Foxj1	ENSMUST00000073939.6|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase 	ENSMUST00000102798.1|Tek|ENSMUSG00000006386.9|endothelial-specific receptor tyrosine kinase
mm10_v2_chr3_+_67374116_67374154	0.901176	Foxk1_Foxj1	ENSMUST00000061322.8|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr14_+_73237891_73238007	0.890016	Foxk1_Foxj1	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr17_-_26099257_26099259	0.87545	Foxk1_Foxj1	ENSMUST00000053575.3|Gm8186|ENSMUSG00000049124.3|predicted gene 8186
mm10_v2_chr3_+_67374091_67374102	0.870877	Foxk1_Foxj1	ENSMUST00000077916.5|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr11_-_75348261_75348324	0.865188	Foxk1_Foxj1	ENSMUST00000000767.5|Rpa1|ENSMUSG00000000751.7|replication protein A1 	ENSMUST00000092907.5|Rpa1|ENSMUSG00000000751.7|replication protein A1
mm10_v2_chr18_+_34758890_34758906	0.852958	Foxk1_Foxj1	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr19_-_34879452_34879465	0.846509	Foxk1_Foxj1	ENSMUST00000036584.5|Pank1|ENSMUSG00000033610.9|pantothenate kinase 1
mm10_v2_chr11_-_101466222_101466237	0.826978	Foxk1_Foxj1	ENSMUST00000040430.7|Vat1|ENSMUSG00000034993.7|vesicle amine transport protein 1 homolog (T californica)
mm10_v2_chr5_+_21785253_21785301	0.826692	Foxk1_Foxj1	ENSMUST00000030769.5|Psmc2|ENSMUSG00000028932.7|proteasome (prosome, macropain) 26S subunit, ATPase 2
mm10_v2_chr5_-_44099220_44099237	0.819013	Foxk1_Foxj1	ENSMUST00000165909.1|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr15_+_102459193_102459232	0.80386	Foxk1_Foxj1	ENSMUST00000164957.1|Prr13|ENSMUSG00000023048.7|proline rich 13 	ENSMUST00000171245.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr5_-_5749317_5749340	0.791653	Foxk1_Foxj1	ENSMUST00000015796.2|Steap1|ENSMUSG00000015652.3|six transmembrane epithelial antigen of the prostate 1
mm10_v2_chr2_+_38511643_38511814	0.788109	Foxk1_Foxj1	ENSMUST00000054234.3|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112902.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112895.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6
mm10_v2_chr5_-_115098295_115098295	0.767542	Foxk1_Foxj1	ENSMUST00000100848.2|Gm10401|ENSMUSG00000072693.2|predicted gene 10401
mm10_v2_chr17_-_55915870_55915870	0.767311	Foxk1_Foxj1	ENSMUST00000074828.4|Rpl21-ps6|ENSMUSG00000059912.4|ribosomal protein L21, pseudogene 6
mm10_v2_chr4_-_43499608_43499695	0.756063	Foxk1_Foxj1	ENSMUST00000136005.1|Arhgef39|ENSMUSG00000051517.8|Rho guanine nucleotide exchange factor (GEF) 39 	ENSMUST00000054538.6|Arhgef39|ENSMUSG00000051517.8|Rho guanine nucleotide exchange factor (GEF) 39
mm10_v2_chr10_-_128180265_128180307	0.751094	Foxk1_Foxj1	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr8_-_70523085_70523279	0.751013	Foxk1_Foxj1	ENSMUST00000137610.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1 	ENSMUST00000121623.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1 	ENSMUST00000093456.5|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1 	ENSMUST00000118850.1|Kxd1|ENSMUSG00000055553.10|KxDL motif containing 1
mm10_v2_chrY_+_90785442_90785586	0.738851	Foxk1_Foxj1	ENSMUST00000177591.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000177671.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000179077.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr18_-_51865881_51865881	0.734244	Foxk1_Foxj1	ENSMUST00000091905.2|Gm4950|ENSMUSG00000069379.2|predicted pseudogene 4950
mm10_v2_chrM_-_14060_14074	0.706039	Foxk1_Foxj1	ENSMUST00000082419.1|mt-Nd6|ENSMUSG00000064368.1|mitochondrially encoded NADH dehydrogenase 6
mm10_v2_chr10_+_17796256_17796339	0.69916	Foxk1_Foxj1	ENSMUST00000037964.6|Txlnb|ENSMUSG00000039891.6|taxilin beta
mm10_v2_chr19_+_5041337_5041416	0.698934	Foxk1_Foxj1	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr10_+_11609256_11609269	0.696822	Foxk1_Foxj1	ENSMUST00000052902.7|Gm9797|ENSMUSG00000045455.7|predicted pseudogene 9797
mm10_v2_chrX_+_139217166_139217190	0.688889	Foxk1_Foxj1	ENSMUST00000166444.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000170671.1|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113041.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1 	ENSMUST00000113042.2|Mum1l1|ENSMUSG00000042515.7|melanoma associated antigen (mutated) 1-like 1
mm10_v2_chr6_+_79818031_79818031	0.684326	Foxk1_Foxj1	ENSMUST00000179797.1|Gm20594|ENSMUSG00000096887.1|predicted gene, 20594
mm10_v2_chr8_-_110902442_110902467	0.681789	Foxk1_Foxj1	ENSMUST00000041382.6|Fuk|ENSMUSG00000033703.8|fucokinase
mm10_v2_chr1_-_139377041_139377078	0.674506	Foxk1_Foxj1	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr9_-_108649349_108649407	0.65963	Foxk1_Foxj1	ENSMUST00000013338.8|Arih2|ENSMUSG00000064145.7|ariadne homolog 2 (Drosophila)
mm10_v2_chr7_+_90426312_90426312	0.657096	Foxk1_Foxj1	ENSMUST00000061391.7|Ccdc89|ENSMUSG00000044362.7|coiled-coil domain containing 89
mm10_v2_chr15_-_55548164_55548164	0.648174	Foxk1_Foxj1	ENSMUST00000165356.1|Mrpl13|ENSMUSG00000022370.7|mitochondrial ribosomal protein L13
mm10_v2_chr17_-_26095487_26095514	0.645776	Foxk1_Foxj1	ENSMUST00000025007.5|Nme4|ENSMUSG00000024177.8|NME/NM23 nucleoside diphosphate kinase 4
mm10_v2_chr8_-_61902669_61902713	0.64562	Foxk1_Foxj1	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr10_-_96409038_96409038	0.643885	Foxk1_Foxj1	ENSMUST00000179683.1|Gm20091|ENSMUSG00000094249.1|predicted gene, 20091
mm10_v2_chr1_-_92641942_92641985	0.643137	Foxk1_Foxj1	ENSMUST00000097642.3|Myeov2|ENSMUSG00000073616.4|myeloma overexpressed 2
mm10_v2_chr9_-_64022043_64022066	0.639397	Foxk1_Foxj1	ENSMUST00000041029.5|Smad6|ENSMUSG00000036867.7|SMAD family member 6
mm10_v2_chr10_-_13324160_13324242	0.625958	Foxk1_Foxj1	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr18_+_34759551_34759558	0.615484	Foxk1_Foxj1	ENSMUST00000097622.3|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr4_-_137785371_137785516	0.611141	Foxk1_Foxj1	ENSMUST00000133473.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr10_+_25408346_25408395	0.602993	Foxk1_Foxj1	ENSMUST00000092645.6|Epb4.1l2|ENSMUSG00000019978.9|erythrocyte protein band 4.1-like 2
mm10_v2_chr3_+_129881149_129881188	0.598447	Foxk1_Foxj1	ENSMUST00000061165.7|Pla2g12a|ENSMUSG00000027999.9|phospholipase A2, group XIIA
mm10_v2_chr6_+_38534823_38534872	0.596274	Foxk1_Foxj1	ENSMUST00000019833.4|1110001J03Rik|ENSMUSG00000019689.4|RIKEN cDNA 1110001J03 gene
mm10_v2_chr10_+_115569986_115570035	0.591614	Foxk1_Foxj1	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr10_+_88091070_88091076	0.591031	Foxk1_Foxj1	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr6_+_73248382_73248382	0.590166	Foxk1_Foxj1	ENSMUST00000064740.6|Suclg1|ENSMUSG00000052738.8|succinate-CoA ligase, GDP-forming, alpha subunit
mm10_v2_chr3_-_106167564_106167564	0.586998	Foxk1_Foxj1	ENSMUST00000063062.8|Chi3l3|ENSMUSG00000040809.10|chitinase 3-like 3
mm10_v2_chr13_+_35659856_35659870	0.580166	Foxk1_Foxj1	ENSMUST00000075220.6|Cdyl|ENSMUSG00000059288.7|chromodomain protein, Y chromosome-like
mm10_v2_chr15_-_50882806_50882822	0.551931	Foxk1_Foxj1	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr14_+_11227511_11227552	0.545752	Foxk1_Foxj1	ENSMUST00000080237.3|Rpl21-ps4|ENSMUSG00000072714.1|ribosomal protein L21, pseudogene 4
mm10_v2_chr10_-_127030813_127030840	0.543874	Foxk1_Foxj1	ENSMUST00000040560.4|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr3_-_8964037_8964101	0.543838	Foxk1_Foxj1	ENSMUST00000091354.5|Tpd52|ENSMUSG00000027506.9|tumor protein D52 	ENSMUST00000094381.4|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chrM_+_3906_3926	0.531487	Foxk1_Foxj1	ENSMUST00000082396.1|mt-Nd2|ENSMUSG00000064345.1|mitochondrially encoded NADH dehydrogenase 2
mm10_v2_chr7_+_140968028_140968047	0.530473	Foxk1_Foxj1	ENSMUST00000106040.1|Ifitm1|ENSMUSG00000025491.8|interferon induced transmembrane protein 1 	ENSMUST00000026564.8|Ifitm1|ENSMUSG00000025491.8|interferon induced transmembrane protein 1
mm10_v2_chr10_+_37139558_37139558	0.523234	Foxk1_Foxj1	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr2_+_163661495_163661499	0.520934	Foxk1_Foxj1	ENSMUST00000135537.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr12_-_84617326_84617466	0.515287	Foxk1_Foxj1	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr6_-_115037824_115037881	0.515251	Foxk1_Foxj1	ENSMUST00000174848.1|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 	ENSMUST00000032461.5|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)
mm10_v2_chr14_-_8318023_8318054	0.513331	Foxk1_Foxj1	ENSMUST00000120411.1|Fam107a|ENSMUSG00000021750.9|family with sequence similarity 107, member A
mm10_v2_chr17_+_20570362_20570362	0.509993	Foxk1_Foxj1	ENSMUST00000095633.3|Gm5145|ENSMUSG00000071273.3|predicted pseudogene 5145
mm10_v2_chr14_+_52110939_52110953	0.507364	Foxk1_Foxj1	ENSMUST00000111600.4|Rpgrip1|ENSMUSG00000057132.9|retinitis pigmentosa GTPase regulator interacting protein 1
mm10_v2_chr12_+_52097737_52097775	0.506388	Foxk1_Foxj1	ENSMUST00000040090.9|Nubpl|ENSMUSG00000035142.12|nucleotide binding protein-like
mm10_v2_chr2_-_79908428_79908438	0.505157	Foxk1_Foxj1	ENSMUST00000102652.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102651.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr3_+_134236483_134236500	0.50499	Foxk1_Foxj1	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr1_-_156034800_156034817	0.499938	Foxk1_Foxj1	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr2_-_79908389_79908403	0.497904	Foxk1_Foxj1	ENSMUST00000090756.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr1_+_131970589_131970609	0.497445	Foxk1_Foxj1	ENSMUST00000027695.6|Slc45a3|ENSMUSG00000026435.9|solute carrier family 45, member 3
mm10_v2_chr2_-_127792467_127792505	0.485898	Foxk1_Foxj1	ENSMUST00000135091.1|1500011K16Rik|ENSMUSG00000051319.6|RIKEN cDNA 1500011K16 gene
mm10_v2_chr11_-_3266377_3266423	0.479391	Foxk1_Foxj1	ENSMUST00000020741.5|Drg1|ENSMUSG00000020457.7|developmentally regulated GTP binding protein 1
mm10_v2_chr2_-_163645125_163645136	0.477252	Foxk1_Foxj1	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr2_+_164486856_164486898	0.475427	Foxk1_Foxj1	ENSMUST00000109349.2|Dbndd2|ENSMUSG00000017734.9|dysbindin (dystrobrevin binding protein 1) domain containing 2
mm10_v2_chr15_-_42676967_42676978	0.474355	Foxk1_Foxj1	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr15_-_97020322_97020336	0.470663	Foxk1_Foxj1	ENSMUST00000166223.1|Slc38a4|ENSMUSG00000022464.7|solute carrier family 38, member 4
mm10_v2_chr14_+_47472628_47472640	0.469904	Foxk1_Foxj1	ENSMUST00000095941.2|Fbxo34|ENSMUSG00000037536.7|F-box protein 34
mm10_v2_chrY_+_13252442_13252442	0.464075	Foxk1_Foxj1	ENSMUST00000178599.1|Gm21440|ENSMUSG00000093903.1|predicted gene, 21440
mm10_v2_chr4_-_117496940_117497052	0.454606	Foxk1_Foxj1	ENSMUST00000030439.8|Rnf220|ENSMUSG00000028677.12|ring finger protein 220
mm10_v2_chrX_-_100626568_100626611	0.454521	Foxk1_Foxj1	ENSMUST00000015812.5|Pdzd11|ENSMUSG00000015668.7|PDZ domain containing 11
mm10_v2_chr11_-_22982090_22982382	0.453905	Foxk1_Foxj1	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr6_+_117907795_117907832	0.450702	Foxk1_Foxj1	ENSMUST00000167657.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr15_-_82354280_82354291	0.446375	Foxk1_Foxj1	ENSMUST00000023085.5|Ndufa6|ENSMUSG00000022450.5|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)
mm10_v2_chr2_-_80128834_80128996	0.443547	Foxk1_Foxj1	ENSMUST00000102654.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102655.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr8_+_70673198_70673267	0.438331	Foxk1_Foxj1	ENSMUST00000034311.8|Lsm4|ENSMUSG00000031848.8|LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr1_+_180904274_180904343	0.435309	Foxk1_Foxj1	ENSMUST00000027802.7|Pycr2|ENSMUSG00000026520.7|pyrroline-5-carboxylate reductase family, member 2
mm10_v2_chr12_-_4689926_4689926	0.432089	Foxk1_Foxj1	ENSMUST00000080062.6|Gm17541|ENSMUSG00000091732.1|predicted gene, 17541
mm10_v2_chr7_+_78895903_78896009	0.430641	Foxk1_Foxj1	ENSMUST00000107425.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease 	ENSMUST00000107421.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease 	ENSMUST00000107423.1|Aen|ENSMUSG00000030609.12|apoptosis enhancing nuclease
mm10_v2_chr1_-_58504946_58505109	0.428469	Foxk1_Foxj1	ENSMUST00000027198.5|Orc2|ENSMUSG00000026037.8|origin recognition complex, subunit 2
mm10_v2_chr5_+_110330697_110330767	0.427737	Foxk1_Foxj1	ENSMUST00000112481.1|Pole|ENSMUSG00000007080.8|polymerase (DNA directed), epsilon
mm10_v2_chr7_-_86775808_86775839	0.423754	Foxk1_Foxj1	ENSMUST00000107271.3|Folh1|ENSMUSG00000001773.7|folate hydrolase 1
mm10_v2_chr19_+_53329413_53329478	0.422574	Foxk1_Foxj1	ENSMUST00000025998.7|Mxi1|ENSMUSG00000025025.7|Max interacting protein 1
mm10_v2_chr17_+_56613392_56613425	0.420109	Foxk1_Foxj1	ENSMUST00000080492.5|Rpl36|ENSMUSG00000057863.5|ribosomal protein L36
mm10_v2_chr9_+_65214690_65214690	0.419504	Foxk1_Foxj1	ENSMUST00000069000.7|Parp16|ENSMUSG00000032392.10|poly (ADP-ribose) polymerase family, member 16
mm10_v2_chr14_-_57826128_57826180	0.418066	Foxk1_Foxj1	ENSMUST00000022536.2|Ska3|ENSMUSG00000021965.2|spindle and kinetochore associated complex subunit 3
mm10_v2_chr2_-_154769932_154769932	0.413646	Foxk1_Foxj1	ENSMUST00000184654.1|Gm14214|ENSMUSG00000098640.1|predicted gene 14214
mm10_v2_chr7_-_52005792_52006018	0.410627	Foxk1_Foxj1	ENSMUST00000098414.3|Svip|ENSMUSG00000074093.3|small VCP/p97-interacting protein
mm10_v2_chr17_+_34263209_34263256	0.409987	Foxk1_Foxj1	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr15_-_98918131_98918231	0.408525	Foxk1_Foxj1	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chr7_+_31059342_31059382	0.407486	Foxk1_Foxj1	ENSMUST00000039775.7|Lgi4|ENSMUSG00000036560.8|leucine-rich repeat LGI family, member 4
mm10_v2_chr5_-_21785115_21785251	0.407344	Foxk1_Foxj1	ENSMUST00000115193.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115192.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000115195.1|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2 	ENSMUST00000030771.5|Dnajc2|ENSMUSG00000029014.8|DnaJ (Hsp40) homolog, subfamily C, member 2
mm10_v2_chr17_+_78491549_78491565	0.404628	Foxk1_Foxj1	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr4_-_116075022_116075071	0.402422	Foxk1_Foxj1	ENSMUST00000050580.4|Uqcrh|ENSMUSG00000063882.6|ubiquinol-cytochrome c reductase hinge protein 	ENSMUST00000078676.5|Uqcrh|ENSMUSG00000063882.6|ubiquinol-cytochrome c reductase hinge protein
mm10_v2_chr7_-_27985796_27985796	0.40122	Foxk1_Foxj1	ENSMUST00000099111.3|Zfp850|ENSMUSG00000074608.3|zinc finger protein 850
mm10_v2_chr8_+_3567958_3568006	0.399848	Foxk1_Foxj1	ENSMUST00000136592.1|C330021F23Rik|ENSMUSG00000065952.7|RIKEN cDNA C330021F23 gene
mm10_v2_chr19_-_58455161_58455324	0.39842	Foxk1_Foxj1	ENSMUST00000135730.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1 	ENSMUST00000152507.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr2_-_174464063_174464105	0.397626	Foxk1_Foxj1	ENSMUST00000016396.7|Atp5e|ENSMUSG00000016252.7|ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit
mm10_v2_chr13_+_119606650_119606650	0.396936	Foxk1_Foxj1	ENSMUST00000178948.1|Gm21967|ENSMUSG00000094114.1|predicted gene, 21967
mm10_v2_chr19_-_34255325_34255342	0.396411	Foxk1_Foxj1	ENSMUST00000039631.8|Acta2|ENSMUSG00000035783.8|actin, alpha 2, smooth muscle, aorta
mm10_v2_chr10_-_130280218_130280242	0.38927	Foxk1_Foxj1	ENSMUST00000061571.3|Neurod4|ENSMUSG00000048015.3|neurogenic differentiation 4
mm10_v2_chr13_-_66227573_66227573	0.386716	Foxk1_Foxj1	ENSMUST00000167981.2|Gm10772|ENSMUSG00000091347.2|predicted gene 10772
mm10_v2_chr10_+_5593718_5593739	0.386446	Foxk1_Foxj1	ENSMUST00000051809.8|Myct1|ENSMUSG00000046916.8|myc target 1
mm10_v2_chr7_-_102100227_102100258	0.384031	Foxk1_Foxj1	ENSMUST00000106937.1|Art5|ENSMUSG00000070424.5|ADP-ribosyltransferase 5
mm10_v2_chr2_+_174450678_174450708	0.381891	Foxk1_Foxj1	ENSMUST00000016399.5|Tubb1|ENSMUSG00000016255.5|tubulin, beta 1 class VI
mm10_v2_chr8_+_75109528_75109601	0.381655	Foxk1_Foxj1	ENSMUST00000164309.1|Mcm5|ENSMUSG00000005410.5|minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)
mm10_v2_chr15_+_99006056_99006056	0.377368	Foxk1_Foxj1	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr2_+_126556128_126556128	0.375882	Foxk1_Foxj1	ENSMUST00000141482.2|Slc27a2|ENSMUSG00000027359.10|solute carrier family 27 (fatty acid transporter), member 2
mm10_v2_chr2_+_91256144_91256170	0.372757	Foxk1_Foxj1	ENSMUST00000154959.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3 	ENSMUST00000059566.4|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr12_-_84400851_84400900	0.369071	Foxk1_Foxj1	ENSMUST00000117286.1|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5
mm10_v2_chr3_-_59210881_59210883	0.367882	Foxk1_Foxj1	ENSMUST00000040622.1|P2ry13|ENSMUSG00000036362.1|purinergic receptor P2Y, G-protein coupled 13
mm10_v2_chr5_+_148959263_148959278	0.366792	Foxk1_Foxj1	ENSMUST00000135240.1|Gm15409|ENSMUSG00000087272.1|predicted gene 15409
mm10_v2_chr3_-_130709419_130709451	0.3661	Foxk1_Foxj1	ENSMUST00000043937.7|Ostc|ENSMUSG00000041084.7|oligosaccharyltransferase complex subunit
mm10_v2_chr2_+_167538192_167538210	0.362444	Foxk1_Foxj1	ENSMUST00000052631.7|Snai1|ENSMUSG00000042821.7|snail homolog 1 (Drosophila)
mm10_v2_chr11_-_5707658_5707708	0.362173	Foxk1_Foxj1	ENSMUST00000154330.1|Mrps24|ENSMUSG00000020477.4|mitochondrial ribosomal protein S24
mm10_v2_chr14_-_62456286_62456289	0.361839	Foxk1_Foxj1	ENSMUST00000165651.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2 	ENSMUST00000022501.3|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr11_-_34833631_34833663	0.361835	Foxk1_Foxj1	ENSMUST00000093191.2|Spdl1|ENSMUSG00000069910.2|spindle apparatus coiled-coil protein 1
mm10_v2_chr9_+_45055166_45055195	0.361024	Foxk1_Foxj1	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr19_+_23675839_23675863	0.360974	Foxk1_Foxj1	ENSMUST00000056396.5|Gm6563|ENSMUSG00000051255.5|predicted pseudogene 6563
mm10_v2_chr19_+_12846773_12846781	0.360632	Foxk1_Foxj1	ENSMUST00000164001.1|Gm5244|ENSMUSG00000091014.1|predicted pseudogene 5244
mm10_v2_chr13_+_4191163_4191200	0.360559	Foxk1_Foxj1	ENSMUST00000021634.2|Akr1c13|ENSMUSG00000021213.5|aldo-keto reductase family 1, member C13
mm10_v2_chr1_+_92906959_92907036	0.359339	Foxk1_Foxj1	ENSMUST00000060913.6|Dusp28|ENSMUSG00000047067.6|dual specificity phosphatase 28
mm10_v2_chr10_-_127030789_127030812	0.356323	Foxk1_Foxj1	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr6_+_147042755_147042797	0.355406	Foxk1_Foxj1	ENSMUST00000036111.7|Mrps35|ENSMUSG00000040112.7|mitochondrial ribosomal protein S35
mm10_v2_chr11_+_101733011_101733041	0.353499	Foxk1_Foxj1	ENSMUST00000129741.1|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr17_+_34564268_34564299	0.350773	Foxk1_Foxj1	ENSMUST00000015612.7|Notch4|ENSMUSG00000015468.8|notch 4
mm10_v2_chr11_+_23020464_23020556	0.348443	Foxk1_Foxj1	ENSMUST00000094363.3|Fam161a|ENSMUSG00000049811.9|family with sequence similarity 161, member A 	ENSMUST00000151877.1|Fam161a|ENSMUSG00000049811.9|family with sequence similarity 161, member A
mm10_v2_chr2_+_91255954_91256105	0.345999	Foxk1_Foxj1	ENSMUST00000134699.1|Pacsin3|ENSMUSG00000027257.7|protein kinase C and casein kinase substrate in neurons 3
mm10_v2_chr17_+_40811089_40811133	0.344565	Foxk1_Foxj1	ENSMUST00000024721.7|Rhag|ENSMUSG00000023926.7|Rhesus blood group-associated A glycoprotein
mm10_v2_chrX_+_20617503_20617816	0.343931	Foxk1_Foxj1	ENSMUST00000115375.1|Rbm10|ENSMUSG00000031060.10|RNA binding motif protein 10 	ENSMUST00000115374.1|Rbm10|ENSMUSG00000031060.10|RNA binding motif protein 10 	ENSMUST00000084383.3|Rbm10|ENSMUSG00000031060.10|RNA binding motif protein 10
mm10_v2_chr2_-_104742802_104742878	0.343361	Foxk1_Foxj1	ENSMUST00000028595.7|Depdc7|ENSMUSG00000027173.7|DEP domain containing 7
mm10_v2_chr10_+_88201087_88201116	0.342837	Foxk1_Foxj1	ENSMUST00000020248.9|Ccdc53|ENSMUSG00000020056.10|coiled-coil domain containing 53
mm10_v2_chr14_+_75131499_75131607	0.340933	Foxk1_Foxj1	ENSMUST00000125833.1|Lcp1|ENSMUSG00000021998.10|lymphocyte cytosolic protein 1 	ENSMUST00000124499.1|Lcp1|ENSMUSG00000021998.10|lymphocyte cytosolic protein 1
mm10_v2_chr5_-_100674230_100674284	0.337684	Foxk1_Foxj1	ENSMUST00000031262.7|Coq2|ENSMUSG00000029319.7|coenzyme Q2 homolog, prenyltransferase (yeast)
mm10_v2_chr4_-_82885148_82885148	0.334095	Foxk1_Foxj1	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr13_-_103920295_103920367	0.334046	Foxk1_Foxj1	ENSMUST00000169083.1|Erbb2ip|ENSMUSG00000021709.8|Erbb2 interacting protein
mm10_v2_chr12_+_71016658_71016708	0.333728	Foxk1_Foxj1	ENSMUST00000125125.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr3_+_106034661_106034692	0.332008	Foxk1_Foxj1	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
mm10_v2_chr12_-_65073927_65073954	0.33064	Foxk1_Foxj1	ENSMUST00000021332.8|Fkbp3|ENSMUSG00000020949.8|FK506 binding protein 3
mm10_v2_chr5_+_74535535_74535558	0.330633	Foxk1_Foxj1	ENSMUST00000121950.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr12_-_40248073_40248086	0.329977	Foxk1_Foxj1	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chr10_-_127522428_127522454	0.327793	Foxk1_Foxj1	ENSMUST00000026470.4|Shmt2|ENSMUSG00000025403.4|serine hydroxymethyltransferase 2 (mitochondrial)
mm10_v2_chrM_+_2743_2761	0.324197	Foxk1_Foxj1	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr4_+_118409331_118409401	0.322925	Foxk1_Foxj1	ENSMUST00000084319.4|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000106384.3|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000126089.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000073881.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000019229.8|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000144577.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm10_v2_chr14_+_47472547_47472625	0.31873	Foxk1_Foxj1	ENSMUST00000168833.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000163324.1|Fbxo34|ENSMUSG00000037536.7|F-box protein 34 	ENSMUST00000043112.7|Fbxo34|ENSMUSG00000037536.7|F-box protein 34
mm10_v2_chr15_-_10470490_10470527	0.317729	Foxk1_Foxj1	ENSMUST00000136591.1|Dnajc21|ENSMUSG00000044224.10|DnaJ (Hsp40) homolog, subfamily C, member 21
mm10_v2_chr8_-_84237042_84237061	0.314173	Foxk1_Foxj1	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr6_-_6217023_6217125	0.312453	Foxk1_Foxj1	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr14_+_58893465_58893506	0.309904	Foxk1_Foxj1	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr15_+_85116829_85116829	0.309352	Foxk1_Foxj1	ENSMUST00000105085.1|Gm10923|ENSMUSG00000078289.1|predicted gene 10923
mm10_v2_chr12_-_71136611_71136701	0.306479	Foxk1_Foxj1	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chr2_-_106003549_106003549	0.306221	Foxk1_Foxj1	ENSMUST00000102555.4|Dnajc24|ENSMUSG00000027166.8|DnaJ (Hsp40) homolog, subfamily C, member 24
mm10_v2_chr5_-_122697603_122697603	0.304829	Foxk1_Foxj1	ENSMUST00000071235.4|Gm10064|ENSMUSG00000059352.4|predicted gene 10064
mm10_v2_chr11_+_98026695_98026744	0.303049	Foxk1_Foxj1	ENSMUST00000092425.4|Rpl19|ENSMUSG00000017404.6|ribosomal protein L19
mm10_v2_chr4_+_11191354_11191424	0.300035	Foxk1_Foxj1	ENSMUST00000170901.1|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr10_-_30600662_30600749	0.29664	Foxk1_Foxj1	ENSMUST00000019927.6|Trmt11|ENSMUSG00000019792.7|tRNA methyltransferase 11
mm10_v2_chr2_-_118479635_118479711	0.296232	Foxk1_Foxj1	ENSMUST00000110862.1|Srp14|ENSMUSG00000009549.8|signal recognition particle 14 	ENSMUST00000009693.8|Srp14|ENSMUSG00000009549.8|signal recognition particle 14
mm10_v2_chr4_-_45108038_45108128	0.294765	Foxk1_Foxj1	ENSMUST00000107809.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107808.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107807.1|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast) 	ENSMUST00000107810.2|Tomm5|ENSMUSG00000078713.2|translocase of outer mitochondrial membrane 5 homolog (yeast)
mm10_v2_chr5_+_48242549_48242549	0.28775	Foxk1_Foxj1	ENSMUST00000172493.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chrX_-_10117597_10117709	0.285881	Foxk1_Foxj1	ENSMUST00000115543.2|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein 	ENSMUST00000044789.3|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein 	ENSMUST00000115544.2|Srpx|ENSMUSG00000090084.1|sushi-repeat-containing protein
mm10_v2_chr13_+_90923122_90923170	0.285175	Foxk1_Foxj1	ENSMUST00000051955.7|Rps23|ENSMUSG00000049517.7|ribosomal protein S23
mm10_v2_chr15_+_102460076_102460108	0.282983	Foxk1_Foxj1	ENSMUST00000164688.1|Prr13|ENSMUSG00000023048.7|proline rich 13
mm10_v2_chr3_-_10208569_10208586	0.281985	Foxk1_Foxj1	ENSMUST00000029041.4|Fabp4|ENSMUSG00000062515.2|fatty acid binding protein 4, adipocyte
mm10_v2_chr16_+_65815508_65815633	0.281244	Foxk1_Foxj1	ENSMUST00000168064.1|Vgll3|ENSMUSG00000091243.1|vestigial like 3 (Drosophila)
mm10_v2_chr5_-_151651216_151651242	0.279578	Foxk1_Foxj1	ENSMUST00000038131.9|Rfc3|ENSMUSG00000033970.9|replication factor C (activator 1) 3
mm10_v2_chr1_-_156034826_156034880	0.278552	Foxk1_Foxj1	ENSMUST00000141878.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1 	ENSMUST00000123705.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr4_-_62470868_62470922	0.277968	Foxk1_Foxj1	ENSMUST00000135811.1|Wdr31|ENSMUSG00000028391.10|WD repeat domain 31 	ENSMUST00000120095.1|Wdr31|ENSMUSG00000028391.10|WD repeat domain 31 	ENSMUST00000030087.7|Wdr31|ENSMUSG00000028391.10|WD repeat domain 31 	ENSMUST00000107452.1|Wdr31|ENSMUSG00000028391.10|WD repeat domain 31 	ENSMUST00000155522.1|Wdr31|ENSMUSG00000028391.10|WD repeat domain 31
mm10_v2_chr16_-_15637277_15637400	0.277702	Foxk1_Foxj1	ENSMUST00000023353.3|Mcm4|ENSMUSG00000022673.4|minichromosome maintenance deficient 4 homolog (S. cerevisiae)
mm10_v2_chr2_+_117249725_117249754	0.276515	Foxk1_Foxj1	ENSMUST00000028825.4|Fam98b|ENSMUSG00000027349.5|family with sequence similarity 98, member B
mm10_v2_chr2_+_156144023_156144039	0.275969	Foxk1_Foxj1	ENSMUST00000088610.4|Romo1|ENSMUSG00000067847.7|reactive oxygen species modulator 1
mm10_v2_chr13_+_14613242_14613272	0.275343	Foxk1_Foxj1	ENSMUST00000170836.2|Psma2|ENSMUSG00000015671.10|proteasome (prosome, macropain) subunit, alpha type 2
mm10_v2_chr13_+_43370710_43370710	0.274726	Foxk1_Foxj1	ENSMUST00000066804.4|Sirt5|ENSMUSG00000054021.5|sirtuin 5
mm10_v2_chr17_-_30612613_30612663	0.273524	Foxk1_Foxj1	ENSMUST00000167624.1|Glo1|ENSMUSG00000024026.6|glyoxalase 1 	ENSMUST00000024823.6|Glo1|ENSMUSG00000024026.6|glyoxalase 1
mm10_v2_chr1_+_165769392_165769476	0.27289	Foxk1_Foxj1	ENSMUST00000040298.4|Creg1|ENSMUSG00000040713.6|cellular repressor of E1A-stimulated genes 1
mm10_v2_chr5_+_74535449_74535524	0.271402	Foxk1_Foxj1	ENSMUST00000080164.5|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113536.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000122245.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000120618.1|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113535.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae) 	ENSMUST00000113534.2|Fip1l1|ENSMUSG00000029227.9|FIP1 like 1 (S. cerevisiae)
mm10_v2_chr2_+_163122605_163122620	0.270196	Foxk1_Foxj1	ENSMUST00000144092.1|Gm11454|ENSMUSG00000086152.1|predicted gene 11454
mm10_v2_chr12_-_84400929_84400946	0.268508	Foxk1_Foxj1	ENSMUST00000122194.1|Entpd5|ENSMUSG00000021236.10|ectonucleoside triphosphate diphosphohydrolase 5
mm10_v2_chr3_-_79145875_79145930	0.266311	Foxk1_Foxj1	ENSMUST00000118340.1|Rapgef2|ENSMUSG00000062232.8|Rap guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr2_+_173737492_173737511	0.265928	Foxk1_Foxj1	ENSMUST00000067530.4|Vapb|ENSMUSG00000054455.4|vesicle-associated membrane protein, associated protein B and C
mm10_v2_chr15_-_76656905_76656934	0.265665	Foxk1_Foxj1	ENSMUST00000176274.1|Cyhr1|ENSMUSG00000053929.10|cysteine and histidine rich 1
mm10_v2_chr13_-_100616911_100616981	0.265102	Foxk1_Foxj1	ENSMUST00000168772.1|Marveld2|ENSMUSG00000021636.8|MARVEL (membrane-associating) domain containing 2 	ENSMUST00000163163.1|Marveld2|ENSMUSG00000021636.8|MARVEL (membrane-associating) domain containing 2 	ENSMUST00000022137.7|Marveld2|ENSMUSG00000021636.8|MARVEL (membrane-associating) domain containing 2
mm10_v2_chr15_+_79348061_79348154	0.264383	Foxk1_Foxj1	ENSMUST00000163691.1|Maff|ENSMUSG00000042622.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
mm10_v2_chr16_-_19706365_19706399	0.260881	Foxk1_Foxj1	ENSMUST00000081880.5|Lamp3|ENSMUSG00000041247.7|lysosomal-associated membrane protein 3
mm10_v2_chr10_+_88201158_88201218	0.258609	Foxk1_Foxj1	ENSMUST00000171151.2|Ccdc53|ENSMUSG00000020056.10|coiled-coil domain containing 53
mm10_v2_chrY_+_17874741_17874741	0.257823	Foxk1_Foxj1	ENSMUST00000177639.1|Gm20831|ENSMUSG00000094325.1|predicted gene, 20831
mm10_v2_chr1_-_139377094_139377110	0.257553	Foxk1_Foxj1	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr9_-_98601642_98601679	0.256889	Foxk1_Foxj1	ENSMUST00000035034.8|Mrps22|ENSMUSG00000032459.8|mitochondrial ribosomal protein S22
mm10_v2_chr6_-_120357342_120357400	0.25643	Foxk1_Foxj1	ENSMUST00000163827.1|Ccdc77|ENSMUSG00000030177.8|coiled-coil domain containing 77
mm10_v2_chr11_+_101732950_101732965	0.256056	Foxk1_Foxj1	ENSMUST00000039152.7|Dhx8|ENSMUSG00000034931.9|DEAH (Asp-Glu-Ala-His) box polypeptide 8
mm10_v2_chr11_-_21572193_21572211	0.255327	Foxk1_Foxj1	ENSMUST00000102874.4|Mdh1|ENSMUSG00000020321.9|malate dehydrogenase 1, NAD (soluble)
mm10_v2_chr15_+_76343504_76343558	0.255253	Foxk1_Foxj1	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr8_-_41417042_41417135	0.254958	Foxk1_Foxj1	ENSMUST00000033999.6|Frg1|ENSMUSG00000031590.7|FSHD region gene 1
mm10_v2_chr19_-_4012656_4012806	0.254498	Foxk1_Foxj1	ENSMUST00000134479.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000128787.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000133474.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000136921.1|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1 	ENSMUST00000042497.7|Ndufv1|ENSMUSG00000037916.7|NADH dehydrogenase (ubiquinone) flavoprotein 1
mm10_v2_chr7_-_5014645_5014697	0.254168	Foxk1_Foxj1	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr19_+_4962306_4962332	0.252944	Foxk1_Foxj1	ENSMUST00000025836.4|Mrpl11|ENSMUSG00000024902.4|mitochondrial ribosomal protein L11
mm10_v2_chr19_+_37376359_37376422	0.252345	Foxk1_Foxj1	ENSMUST00000012587.3|Kif11|ENSMUSG00000012443.3|kinesin family member 11
mm10_v2_chr4_-_137357711_137357722	0.252216	Foxk1_Foxj1	ENSMUST00000051477.6|Cdc42|ENSMUSG00000006699.11|cell division cycle 42
mm10_v2_chr18_-_23981555_23981555	0.248352	Foxk1_Foxj1	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr6_-_33060256_33060267	0.245726	Foxk1_Foxj1	ENSMUST00000066379.4|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr8_+_34807287_34807310	0.243575	Foxk1_Foxj1	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr1_+_180568913_180568960	0.243537	Foxk1_Foxj1	ENSMUST00000027777.6|Parp1|ENSMUSG00000026496.6|poly (ADP-ribose) polymerase family, member 1
mm10_v2_chr1_+_55131317_55131331	0.241384	Foxk1_Foxj1	ENSMUST00000162553.1|Mob4|ENSMUSG00000025979.7|MOB family member 4, phocein
mm10_v2_chr14_-_55784027_55784073	0.241366	Foxk1_Foxj1	ENSMUST00000170223.1|Adcy4|ENSMUSG00000022220.7|adenylate cyclase 4
mm10_v2_chr6_-_53820764_53820837	0.24128	Foxk1_Foxj1	ENSMUST00000127748.2|Tril|ENSMUSG00000043496.5|TLR4 interactor with leucine-rich repeats
mm10_v2_chr9_+_48450327_48450400	0.240458	Foxk1_Foxj1	ENSMUST00000165252.1|Gm5616|ENSMUSG00000063543.4|predicted gene 5616
mm10_v2_chr2_+_36049453_36049507	0.240148	Foxk1_Foxj1	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr4_-_25281752_25281800	0.23814	Foxk1_Foxj1	ENSMUST00000038705.7|Ufl1|ENSMUSG00000040359.8|UFM1 specific ligase 1
mm10_v2_chr4_+_55350043_55350078	0.236743	Foxk1_Foxj1	ENSMUST00000030134.8|Rad23b|ENSMUSG00000028426.10|RAD23b homolog (S. cerevisiae)
mm10_v2_chrX_-_74373218_74373249	0.235529	Foxk1_Foxj1	ENSMUST00000178691.1|Ubl4|ENSMUSG00000015290.9|ubiquitin-like 4 	ENSMUST00000114146.1|Slc10a3|ENSMUSG00000032806.7|solute carrier family 10 (sodium/bile acid cotransporter family), member 3
mm10_v2_chr4_-_103215147_103215201	0.234595	Foxk1_Foxj1	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr8_-_107588392_107588482	0.233238	Foxk1_Foxj1	ENSMUST00000044106.4|Psmd7|ENSMUSG00000039067.4|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
mm10_v2_chr2_-_6951680_6951680	0.229965	Foxk1_Foxj1	ENSMUST00000076071.2|Gm10115|ENSMUSG00000062319.2|predicted gene 10115
mm10_v2_chr11_-_69662625_69662642	0.229765	Foxk1_Foxj1	ENSMUST00000018905.5|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr7_-_90129339_90129474	0.228371	Foxk1_Foxj1	ENSMUST00000181189.1|2310010J17Rik|ENSMUSG00000097162.1|RIKEN cDNA 2310010J17 gene
mm10_v2_chr8_+_94214567_94214608	0.227654	Foxk1_Foxj1	ENSMUST00000079961.6|Nup93|ENSMUSG00000032939.7|nucleoporin 93
mm10_v2_chr1_-_120120138_120120194	0.227063	Foxk1_Foxj1	ENSMUST00000112648.1|Dbi|ENSMUSG00000026385.10|diazepam binding inhibitor 	ENSMUST00000128408.1|Dbi|ENSMUSG00000026385.10|diazepam binding inhibitor
mm10_v2_chr11_-_69662564_69662596	0.22466	Foxk1_Foxj1	ENSMUST00000129224.1|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1 	ENSMUST00000155200.1|Mpdu1|ENSMUSG00000018761.8|mannose-P-dolichol utilization defect 1
mm10_v2_chr2_+_4718145_4718205	0.223991	Foxk1_Foxj1	ENSMUST00000056914.6|Bend7|ENSMUSG00000048186.8|BEN domain containing 7
mm10_v2_chr2_-_50296680_50296801	0.22116	Foxk1_Foxj1	ENSMUST00000144143.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000102769.4|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria 	ENSMUST00000133768.1|Mmadhc|ENSMUSG00000026766.10|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria
mm10_v2_chr13_+_49582745_49582778	0.220311	Foxk1_Foxj1	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr9_+_65676517_65676556	0.220171	Foxk1_Foxj1	ENSMUST00000153700.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000046490.7|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr6_+_135011609_135011653	0.218899	Foxk1_Foxj1	ENSMUST00000032326.4|Ddx47|ENSMUSG00000030204.4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 	ENSMUST00000130851.1|Ddx47|ENSMUSG00000030204.4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 	ENSMUST00000154558.1|Ddx47|ENSMUSG00000030204.4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
mm10_v2_chr14_+_32028989_32029044	0.217563	Foxk1_Foxj1	ENSMUST00000022460.4|Galnt15|ENSMUSG00000021903.5|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15
mm10_v2_chr4_-_139833524_139833535	0.217152	Foxk1_Foxj1	ENSMUST00000030508.7|Pax7|ENSMUSG00000028736.7|paired box gene 7
mm10_v2_chr3_+_53488677_53488727	0.213854	Foxk1_Foxj1	ENSMUST00000029307.3|Stoml3|ENSMUSG00000027744.3|stomatin (Epb7.2)-like 3
mm10_v2_chr2_+_61578549_61578617	0.212385	Foxk1_Foxj1	ENSMUST00000112502.1|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator 	ENSMUST00000078074.2|Tank|ENSMUSG00000064289.9|TRAF family member-associated Nf-kappa B activator
mm10_v2_chr11_+_98026918_98026931	0.211973	Foxk1_Foxj1	ENSMUST00000017548.6|Rpl19|ENSMUSG00000017404.6|ribosomal protein L19
mm10_v2_chr7_-_30559828_30559842	0.208403	Foxk1_Foxj1	ENSMUST00000108164.1|Lin37|ENSMUSG00000036845.6|lin-37 homolog (C. elegans)
mm10_v2_chrX_-_104671048_104671071	0.205845	Foxk1_Foxj1	ENSMUST00000042070.5|Zdhhc15|ENSMUSG00000033906.5|zinc finger, DHHC domain containing 15
mm10_v2_chr10_+_93488766_93488774	0.199927	Foxk1_Foxj1	ENSMUST00000129421.1|Hal|ENSMUSG00000020017.8|histidine ammonia lyase
mm10_v2_chr8_-_78821136_78821143	0.198818	Foxk1_Foxj1	ENSMUST00000130325.1|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENSMUST00000051867.6|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr7_-_86775860_86775872	0.198458	Foxk1_Foxj1	ENSMUST00000001824.5|Folh1|ENSMUSG00000001773.7|folate hydrolase 1
mm10_v2_chr7_+_120917744_120917815	0.19796	Foxk1_Foxj1	ENSMUST00000033173.7|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E 	ENSMUST00000106483.2|Polr3e|ENSMUSG00000030880.7|polymerase (RNA) III (DNA directed) polypeptide E
mm10_v2_chr18_+_35598607_35598653	0.196095	Foxk1_Foxj1	ENSMUST00000041314.8|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115737.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115736.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2 	ENSMUST00000115735.1|Paip2|ENSMUSG00000037058.8|polyadenylate-binding protein-interacting protein 2
mm10_v2_chr5_-_129008494_129008537	0.195526	Foxk1_Foxj1	ENSMUST00000100680.3|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr2_+_73312601_73312665	0.195505	Foxk1_Foxj1	ENSMUST00000090811.4|Scrn3|ENSMUSG00000008226.8|secernin 3 	ENSMUST00000112050.1|Scrn3|ENSMUSG00000008226.8|secernin 3
mm10_v2_chr15_+_85510812_85510812	0.192751	Foxk1_Foxj1	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr14_+_30879257_30879327	0.189055	Foxk1_Foxj1	ENSMUST00000040715.6|Mustn1|ENSMUSG00000042485.6|musculoskeletal, embryonic nuclear protein 1
mm10_v2_chr19_-_20390944_20391010	0.188614	Foxk1_Foxj1	ENSMUST00000025561.7|Anxa1|ENSMUSG00000024659.8|annexin A1
mm10_v2_chr5_-_138172383_138172422	0.187934	Foxk1_Foxj1	ENSMUST00000000505.9|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr3_+_51415986_51416044	0.187441	Foxk1_Foxj1	ENSMUST00000029303.7|Naa15|ENSMUSG00000063273.6|N(alpha)-acetyltransferase 15, NatA auxiliary subunit
mm10_v2_chr7_-_46919915_46919986	0.186846	Foxk1_Foxj1	ENSMUST00000143413.1|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101 	ENSMUST00000014546.8|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101
mm10_v2_chr9_+_65676566_65676621	0.185979	Foxk1_Foxj1	ENSMUST00000147732.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2 	ENSMUST00000136166.2|Oaz2|ENSMUSG00000040652.9|ornithine decarboxylase antizyme 2
mm10_v2_chr7_-_34655500_34655515	0.183204	Foxk1_Foxj1	ENSMUST00000032709.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr8_+_58912257_58912257	0.177985	Foxk1_Foxj1	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr6_+_29361410_29361461	0.174701	Foxk1_Foxj1	ENSMUST00000156163.1|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr12_-_31351368_31351437	0.174181	Foxk1_Foxj1	ENSMUST00000110857.3|Dld|ENSMUSG00000020664.9|dihydrolipoamide dehydrogenase
mm10_v2_chr8_+_23669653_23669671	0.17215	Foxk1_Foxj1	ENSMUST00000042352.4|Zmat4|ENSMUSG00000037492.9|zinc finger, matrin type 4
mm10_v2_chr16_-_36666067_36666086	0.172032	Foxk1_Foxj1	ENSMUST00000089620.4|Cd86|ENSMUSG00000022901.7|CD86 antigen
mm10_v2_chrX_+_9885622_9885622	0.171262	Foxk1_Foxj1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr6_-_71144338_71144356	0.170657	Foxk1_Foxj1	ENSMUST00000074241.7|Thnsl2|ENSMUSG00000054474.9|threonine synthase-like 2 (bacterial) 	ENSMUST00000160918.1|Thnsl2|ENSMUSG00000054474.9|threonine synthase-like 2 (bacterial)
mm10_v2_chr13_-_65112963_65112987	0.170651	Foxk1_Foxj1	ENSMUST00000155487.1|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1 	ENSMUST00000054730.8|Hiatl1|ENSMUSG00000038212.9|hippocampus abundant transcript-like 1
mm10_v2_chr4_+_40722912_40723001	0.169802	Foxk1_Foxj1	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr2_-_75981967_75981967	0.169727	Foxk1_Foxj1	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr7_+_141476374_141476400	0.168785	Foxk1_Foxj1	ENSMUST00000117634.1|Tspan4|ENSMUSG00000025511.8|tetraspanin 4
mm10_v2_chr11_+_46235460_46235531	0.166751	Foxk1_Foxj1	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr5_-_129008546_129008596	0.166547	Foxk1_Foxj1	ENSMUST00000031378.7|Stx2|ENSMUSG00000029428.7|syntaxin 2
mm10_v2_chr11_+_78245743_78245821	0.163849	Foxk1_Foxj1	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chrY_+_1010543_1010613	0.161792	Foxk1_Foxj1	ENSMUST00000091197.3|Eif2s3y|ENSMUSG00000069049.5|eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
mm10_v2_chr18_-_35740499_35740554	0.160751	Foxk1_Foxj1	ENSMUST00000115728.3|Tmem173|ENSMUSG00000024349.9|transmembrane protein 173
mm10_v2_chr3_+_94933041_94933073	0.159987	Foxk1_Foxj1	ENSMUST00000090839.5|Selenbp1|ENSMUSG00000068874.7|selenium binding protein 1
mm10_v2_chr4_+_40723084_40723117	0.157783	Foxk1_Foxj1	ENSMUST00000149794.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr16_-_36784924_36784971	0.156857	Foxk1_Foxj1	ENSMUST00000168279.1|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2 	ENSMUST00000164579.1|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2 	ENSMUST00000023616.2|Slc15a2|ENSMUSG00000022899.2|solute carrier family 15 (H+/peptide transporter), member 2
mm10_v2_chr3_-_59220150_59220259	0.155247	Foxk1_Foxj1	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr7_+_127904079_127904125	0.154659	Foxk1_Foxj1	ENSMUST00000071056.7|Bckdk|ENSMUSG00000030802.8|branched chain ketoacid dehydrogenase kinase
mm10_v2_chr8_-_8690493_8690538	0.153759	Foxk1_Foxj1	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr6_-_69400097_69400097	0.153237	Foxk1_Foxj1	ENSMUST00000177795.1|Igkv4-62|ENSMUSG00000094262.1|immunoglobulin kappa variable 4-62
mm10_v2_chr12_+_112999964_112999964	0.15186	Foxk1_Foxj1	ENSMUST00000180971.1|9230104M06Rik|ENSMUSG00000097100.1|RIKEN cDNA 9230104M06 gene
mm10_v2_chr7_-_66388286_66388350	0.151836	Foxk1_Foxj1	ENSMUST00000015277.7|Lrrk1|ENSMUSG00000015133.10|leucine-rich repeat kinase 1
mm10_v2_chr3_+_138374121_138374163	0.150262	Foxk1_Foxj1	ENSMUST00000171054.1|Adh6-ps1|ENSMUSG00000090306.1|alcohol dehydrogenase 6 (class V), pseudogene 1
mm10_v2_chr11_-_102156339_102156414	0.150256	Foxk1_Foxj1	ENSMUST00000021296.6|Tmem101|ENSMUSG00000020921.6|transmembrane protein 101
mm10_v2_chr7_+_81762925_81762943	0.148911	Foxk1_Foxj1	ENSMUST00000042166.4|Fam103a1|ENSMUSG00000038646.7|family with sequence similarity 103, member A1
mm10_v2_chr5_+_150522599_150522637	0.148475	Foxk1_Foxj1	ENSMUST00000044620.7|Brca2|ENSMUSG00000041147.7|breast cancer 2
mm10_v2_chr10_-_13388830_13388970	0.148246	Foxk1_Foxj1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr12_+_86470109_86470122	0.146517	Foxk1_Foxj1	ENSMUST00000167891.1|Esrrb|ENSMUSG00000021255.11|estrogen related receptor, beta
mm10_v2_chr10_+_11281304_11281357	0.143535	Foxk1_Foxj1	ENSMUST00000129456.1|Fbxo30|ENSMUSG00000047648.7|F-box protein 30
mm10_v2_chr18_+_60376029_60376029	0.141964	Foxk1_Foxj1	ENSMUST00000066912.5|Iigp1|ENSMUSG00000054072.5|interferon inducible GTPase 1 	ENSMUST00000032473.6|Iigp1|ENSMUSG00000054072.5|interferon inducible GTPase 1
mm10_v2_chr7_+_80186835_80186904	0.141717	Foxk1_Foxj1	ENSMUST00000107383.1|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B 	ENSMUST00000032754.7|Sema4b|ENSMUSG00000030539.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
mm10_v2_chr17_-_79896028_79896123	0.139218	Foxk1_Foxj1	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr8_-_47713920_47713938	0.138352	Foxk1_Foxj1	ENSMUST00000038738.5|Cdkn2aip|ENSMUSG00000038069.5|CDKN2A interacting protein
mm10_v2_chr11_+_101582236_101582312	0.138238	Foxk1_Foxj1	ENSMUST00000039581.7|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000100403.2|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000107194.1|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A 	ENSMUST00000128614.1|Tmem106a|ENSMUSG00000034947.7|transmembrane protein 106A
mm10_v2_chr9_-_105521147_105521265	0.137017	Foxk1_Foxj1	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr2_+_27676440_27676454	0.134226	Foxk1_Foxj1	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr9_+_102717668_102717697	0.131985	Foxk1_Foxj1	ENSMUST00000035121.7|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr1_-_119913162_119913208	0.131277	Foxk1_Foxj1	ENSMUST00000037906.5|Tmem177|ENSMUSG00000036975.5|transmembrane protein 177
mm10_v2_chr6_+_68161415_68161415	0.130033	Foxk1_Foxj1	ENSMUST00000168090.1|Igkv1-115|ENSMUSG00000091800.1|immunoglobulin kappa variable 1-115
mm10_v2_chr2_+_163017354_163017513	0.12953	Foxk1_Foxj1	ENSMUST00000018002.6|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52 	ENSMUST00000150396.1|Ift52|ENSMUSG00000017858.6|intraflagellar transport 52
mm10_v2_chr5_+_115279666_115279716	0.129045	Foxk1_Foxj1	ENSMUST00000040421.4|Coq5|ENSMUSG00000041733.4|coenzyme Q5 homolog, methyltransferase (yeast)
mm10_v2_chr4_+_57637816_57637846	0.128773	Foxk1_Foxj1	ENSMUST00000150412.1|Gm20459|ENSMUSG00000089945.4|predicted gene 20459
mm10_v2_chr15_+_79347534_79347556	0.12675	Foxk1_Foxj1	ENSMUST00000096350.3|Maff|ENSMUSG00000042622.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
mm10_v2_chr4_-_139832920_139833007	0.12502	Foxk1_Foxj1	ENSMUST00000174681.1|Pax7|ENSMUSG00000028736.7|paired box gene 7
mm10_v2_chr2_+_32535315_32535359	0.122983	Foxk1_Foxj1	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr18_+_4993795_4993819	0.122935	Foxk1_Foxj1	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr17_+_34969912_34969912	0.121671	Foxk1_Foxj1	ENSMUST00000173680.1|Gm20481|ENSMUSG00000092609.1|predicted gene 20481
mm10_v2_chr15_-_75048837_75048837	0.121335	Foxk1_Foxj1	ENSMUST00000179762.1|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1 	ENSMUST00000065408.9|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1
mm10_v2_chr14_-_62454793_62454793	0.120098	Foxk1_Foxj1	ENSMUST00000128573.1|Gucy1b2|ENSMUSG00000021933.5|guanylate cyclase 1, soluble, beta 2
mm10_v2_chr1_+_137966529_137966532	0.118292	Foxk1_Foxj1	ENSMUST00000182158.1|A430106G13Rik|ENSMUSG00000098206.1|RIKEN cDNA A430106G13 gene
mm10_v2_chr12_-_3357012_3357153	0.118272	Foxk1_Foxj1	ENSMUST00000180719.1|Gm26520|ENSMUSG00000097429.1|predicted gene, 26520
mm10_v2_chr3_-_28765364_28765389	0.117417	Foxk1_Foxj1	ENSMUST00000094335.3|Gm6505|ENSMUSG00000070522.3|predicted pseudogene 6505
mm10_v2_chr4_-_134012381_134012404	0.115917	Foxk1_Foxj1	ENSMUST00000176113.1|Lin28a|ENSMUSG00000050966.3|lin-28 homolog A (C. elegans)
mm10_v2_chr11_+_72301613_72301671	0.115562	Foxk1_Foxj1	ENSMUST00000151440.1|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1 	ENSMUST00000146233.1|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1 	ENSMUST00000140842.2|Xaf1|ENSMUSG00000040483.9|XIAP associated factor 1
mm10_v2_chr19_-_58455903_58455914	0.114995	Foxk1_Foxj1	ENSMUST00000131877.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr7_+_19291070_19291124	0.114587	Foxk1_Foxj1	ENSMUST00000108468.3|Rtn2|ENSMUSG00000030401.9|reticulon 2 (Z-band associated protein)
mm10_v2_chr3_-_65529355_65529384	0.114148	Foxk1_Foxj1	ENSMUST00000099076.3|4931440P22Rik|ENSMUSG00000074580.5|RIKEN cDNA 4931440P22 gene
mm10_v2_chr14_+_75131101_75131159	0.113872	Foxk1_Foxj1	ENSMUST00000143539.1|Lcp1|ENSMUSG00000021998.10|lymphocyte cytosolic protein 1 	ENSMUST00000134114.1|Lcp1|ENSMUSG00000021998.10|lymphocyte cytosolic protein 1
mm10_v2_chr6_-_99028874_99028942	0.110786	Foxk1_Foxj1	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr9_-_65908676_65908798	0.109899	Foxk1_Foxj1	ENSMUST00000119245.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000134338.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4 	ENSMUST00000179395.1|Trip4|ENSMUSG00000032386.9|thyroid hormone receptor interactor 4
mm10_v2_chr16_+_48872608_48872626	0.109677	Foxk1_Foxj1	ENSMUST00000065666.4|Retnlg|ENSMUSG00000022651.5|resistin like gamma
mm10_v2_chr9_-_75559604_75559665	0.108601	Foxk1_Foxj1	ENSMUST00000072232.7|Tmod3|ENSMUSG00000058587.7|tropomodulin 3
mm10_v2_chr4_+_40722461_40722512	0.108155	Foxk1_Foxj1	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr9_+_70678950_70679010	0.107903	Foxk1_Foxj1	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr12_+_69963452_69963474	0.107677	Foxk1_Foxj1	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr6_+_142414012_142414012	0.106276	Foxk1_Foxj1	ENSMUST00000141548.1|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr8_-_122476036_122476088	0.104396	Foxk1_Foxj1	ENSMUST00000014614.3|Rnf166|ENSMUSG00000014470.4|ring finger protein 166
mm10_v2_chr16_-_38550173_38550258	0.102461	Foxk1_Foxj1	ENSMUST00000036210.6|Poglut1|ENSMUSG00000034064.8|protein O-glucosyltransferase 1
mm10_v2_chr2_+_136052180_136052239	0.0960929	Foxk1_Foxj1	ENSMUST00000144403.1|Lamp5|ENSMUSG00000027270.8|lysosomal-associated membrane protein family, member 5
mm10_v2_chr11_+_23665615_23665697	0.0958802	Foxk1_Foxj1	ENSMUST00000109525.1|Pus10|ENSMUSG00000020280.6|pseudouridylate synthase 10 	ENSMUST00000020520.4|Pus10|ENSMUSG00000020280.6|pseudouridylate synthase 10
mm10_v2_chr1_+_34439851_34439910	0.093415	Foxk1_Foxj1	ENSMUST00000027303.7|Imp4|ENSMUSG00000026127.7|IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr3_+_89202916_89202962	0.0918473	Foxk1_Foxj1	ENSMUST00000077367.4|Gba|ENSMUSG00000028048.5|glucosidase, beta, acid 	ENSMUST00000167998.1|Gba|ENSMUSG00000028048.5|glucosidase, beta, acid
mm10_v2_chr5_-_114823460_114823475	0.0918422	Foxk1_Foxj1	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr18_-_61786636_61786702	0.0915407	Foxk1_Foxj1	ENSMUST00000120472.1|Afap1l1|ENSMUSG00000033032.9|actin filament associated protein 1-like 1
mm10_v2_chr4_-_117682233_117682279	0.0915284	Foxk1_Foxj1	ENSMUST00000102687.3|Dmap1|ENSMUSG00000009640.5|DNA methyltransferase 1-associated protein 1
mm10_v2_chr1_-_85270543_85270566	0.0894372	Foxk1_Foxj1	ENSMUST00000093506.5|C130026I21Rik|ENSMUSG00000052477.9|RIKEN cDNA C130026I21 gene 	ENSMUST00000064341.8|C130026I21Rik|ENSMUSG00000052477.9|RIKEN cDNA C130026I21 gene
mm10_v2_chr2_-_148875452_148875692	0.0890286	Foxk1_Foxj1	ENSMUST00000028938.6|Cst3|ENSMUSG00000027447.6|cystatin C 	ENSMUST00000144845.1|Cst3|ENSMUSG00000027447.6|cystatin C
mm10_v2_chrX_-_10216918_10216921	0.0889798	Foxk1_Foxj1	ENSMUST00000072393.2|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000044598.6|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000073392.4|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115533.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator 	ENSMUST00000115532.1|Rpgr|ENSMUSG00000031174.11|retinitis pigmentosa GTPase regulator
mm10_v2_chr9_-_60511003_60511035	0.0869065	Foxk1_Foxj1	ENSMUST00000098660.3|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr3_+_63295815_63295872	0.0842579	Foxk1_Foxj1	ENSMUST00000029400.1|Mme|ENSMUSG00000027820.7|membrane metallo endopeptidase
mm10_v2_chr17_-_34118476_34118522	0.0841024	Foxk1_Foxj1	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr14_+_113314602_113314608	0.0832401	Foxk1_Foxj1	ENSMUST00000072359.6|Tpm3-rs7|ENSMUSG00000058126.6|tropomyosin 3, related sequence 7
mm10_v2_chr16_-_29541483_29541597	0.0824247	Foxk1_Foxj1	ENSMUST00000057018.8|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4 	ENSMUST00000182627.1|Atp13a4|ENSMUSG00000038094.9|ATPase type 13A4
mm10_v2_chr11_-_86993682_86993707	0.0822001	Foxk1_Foxj1	ENSMUST00000018571.4|Ypel2|ENSMUSG00000018427.7|yippee-like 2 (Drosophila)
mm10_v2_chr8_+_35587780_35587825	0.0808019	Foxk1_Foxj1	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr6_-_33060172_33060252	0.0802224	Foxk1_Foxj1	ENSMUST00000115091.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3 	ENSMUST00000127666.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chrX_-_99470672_99470748	0.0777082	Foxk1_Foxj1	ENSMUST00000113797.3|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000113790.1|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000036354.6|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing 	ENSMUST00000167246.1|Pja1|ENSMUSG00000034403.10|praja1, RING-H2 motif containing
mm10_v2_chr13_-_14613017_14613056	0.0764118	Foxk1_Foxj1	ENSMUST00000015816.3|Mrpl32|ENSMUSG00000015672.3|mitochondrial ribosomal protein L32
mm10_v2_chr4_+_11558914_11558979	0.0761325	Foxk1_Foxj1	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chr4_-_14621669_14621786	0.0760306	Foxk1_Foxj1	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr10_+_128267997_128267997	0.0756632	Foxk1_Foxj1	ENSMUST00000050901.2|Apof|ENSMUSG00000047631.2|apolipoprotein F
mm10_v2_chr3_+_145987835_145987901	0.0753364	Foxk1_Foxj1	ENSMUST00000039517.6|Syde2|ENSMUSG00000036863.7|synapse defective 1, Rho GTPase, homolog 2 (C. elegans)
mm10_v2_chr8_+_75016222_75016246	0.0745999	Foxk1_Foxj1	ENSMUST00000109940.1|Hmgxb4|ENSMUSG00000034518.7|HMG box domain containing 4
mm10_v2_chr7_-_133123409_133123472	0.074507	Foxk1_Foxj1	ENSMUST00000170459.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000166400.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr1_-_74305607_74305622	0.0726849	Foxk1_Foxj1	ENSMUST00000130763.1|Tmbim1|ENSMUSG00000006301.11|transmembrane BAX inhibitor motif containing 1
mm10_v2_chr19_-_45783512_45783558	0.0721187	Foxk1_Foxj1	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr17_-_35667546_35667618	0.0715608	Foxk1_Foxj1	ENSMUST00000043674.8|Vars2|ENSMUSG00000038838.9|valyl-tRNA synthetase 2, mitochondrial (putative)
mm10_v2_chr1_-_45503282_45503282	0.0705664	Foxk1_Foxj1	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr1_+_58505135_58505162	0.0705177	Foxk1_Foxj1	ENSMUST00000160947.1|Gm15834|ENSMUSG00000085054.2|predicted gene 15834 	ENSMUST00000129740.2|Gm15834|ENSMUSG00000085054.2|predicted gene 15834 	ENSMUST00000139825.1|Gm15834|ENSMUSG00000085054.2|predicted gene 15834
mm10_v2_chr7_+_116093336_116093372	0.0690178	Foxk1_Foxj1	ENSMUST00000106608.1|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene 	ENSMUST00000106607.1|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene
mm10_v2_chr12_-_103443653_103443680	0.0684896	Foxk1_Foxj1	ENSMUST00000055071.8|Ifi27l2a|ENSMUSG00000079017.3|interferon, alpha-inducible protein 27 like 2A
mm10_v2_chr12_-_55302974_55303014	0.0682749	Foxk1_Foxj1	ENSMUST00000021410.8|Ppp2r3c|ENSMUSG00000021022.8|protein phosphatase 2, regulatory subunit B'', gamma
mm10_v2_chr13_+_40859768_40859822	0.0680783	Foxk1_Foxj1	ENSMUST00000110191.2|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr12_-_31950170_31950197	0.0675251	Foxk1_Foxj1	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr6_+_104492790_104492965	0.0672758	Foxk1_Foxj1	ENSMUST00000161446.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000161070.1|Cntn6|ENSMUSG00000030092.8|contactin 6 	ENSMUST00000089215.5|Cntn6|ENSMUSG00000030092.8|contactin 6
mm10_v2_chr6_+_115853470_115853598	0.0656432	Foxk1_Foxj1	ENSMUST00000112925.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000112923.1|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122 	ENSMUST00000038234.6|Ift122|ENSMUSG00000030323.7|intraflagellar transport 122
mm10_v2_chr4_-_82850721_82850814	0.0650152	Foxk1_Foxj1	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr1_+_136467958_136467958	0.0647641	Foxk1_Foxj1	ENSMUST00000047817.6|Kif14|ENSMUSG00000041498.7|kinesin family member 14
mm10_v2_chr11_+_88047302_88047373	0.0635211	Foxk1_Foxj1	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr9_+_96258697_96258711	0.0632754	Foxk1_Foxj1	ENSMUST00000179416.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr11_-_82829024_82829043	0.0612026	Foxk1_Foxj1	ENSMUST00000021036.6|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000074515.4|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein 	ENSMUST00000103218.2|Rffl|ENSMUSG00000020696.12|ring finger and FYVE like domain containing protein
mm10_v2_chr6_-_136941887_136941911	0.0602759	Foxk1_Foxj1	ENSMUST00000111891.1|Arhgdib|ENSMUSG00000030220.7|Rho, GDP dissociation inhibitor (GDI) beta
mm10_v2_chr2_-_151009364_151009398	0.0601836	Foxk1_Foxj1	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr17_+_24840108_24840143	0.0590941	Foxk1_Foxj1	ENSMUST00000164251.1|Hagh|ENSMUSG00000024158.11|hydroxyacyl glutathione hydrolase
mm10_v2_chr6_+_142413441_142413441	0.0580239	Foxk1_Foxj1	ENSMUST00000088263.4|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr8_-_53638945_53639065	0.0578588	Foxk1_Foxj1	ENSMUST00000047768.4|Neil3|ENSMUSG00000039396.4|nei like 3 (E. coli)
mm10_v2_chr5_+_122209729_122209914	0.0575897	Foxk1_Foxj1	ENSMUST00000072602.7|Hvcn1|ENSMUSG00000064267.7|hydrogen voltage-gated channel 1 	ENSMUST00000143560.1|Hvcn1|ENSMUSG00000064267.7|hydrogen voltage-gated channel 1
mm10_v2_chr6_-_86765866_86765921	0.0568354	Foxk1_Foxj1	ENSMUST00000113675.1|Anxa4|ENSMUSG00000029994.11|annexin A4
mm10_v2_chr12_-_108894116_108894174	0.0543186	Foxk1_Foxj1	ENSMUST00000109848.3|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr6_-_112696604_112696686	0.0529158	Foxk1_Foxj1	ENSMUST00000113182.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000113180.1|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000068487.5|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae) 	ENSMUST00000077088.4|Rad18|ENSMUSG00000030254.10|RAD18 homolog (S. cerevisiae)
mm10_v2_chr15_+_99392882_99392903	0.0513922	Foxk1_Foxj1	ENSMUST00000023749.8|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr6_-_148896150_148896237	0.0502022	Foxk1_Foxj1	ENSMUST00000072324.5|Caprin2|ENSMUSG00000030309.10|caprin family member 2 	ENSMUST00000111569.2|Caprin2|ENSMUSG00000030309.10|caprin family member 2
mm10_v2_chr6_+_142413833_142413833	0.0484525	Foxk1_Foxj1	ENSMUST00000126521.2|B230216G23Rik|ENSMUSG00000071112.5|RIKEN cDNA B230216G23 gene
mm10_v2_chr10_+_127420867_127420916	0.0476964	Foxk1_Foxj1	ENSMUST00000064793.6|R3hdm2|ENSMUSG00000025404.9|R3H domain containing 2
mm10_v2_chr10_-_33624587_33624769	0.0473586	Foxk1_Foxj1	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
mm10_v2_chrX_-_74393003_74393072	0.0440342	Foxk1_Foxj1	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr15_+_99393219_99393248	0.0436744	Foxk1_Foxj1	ENSMUST00000159209.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr2_-_170194033_170194064	0.0435987	Foxk1_Foxj1	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr11_-_40695203_40695223	0.0433082	Foxk1_Foxj1	ENSMUST00000101347.3|Mat2b|ENSMUSG00000042032.7|methionine adenosyltransferase II, beta
mm10_v2_chr2_+_12924041_12924113	0.0432191	Foxk1_Foxj1	ENSMUST00000134794.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000028063.4|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000154269.1|Pter|ENSMUSG00000026730.6|phosphotriesterase related 	ENSMUST00000114796.3|Pter|ENSMUSG00000026730.6|phosphotriesterase related
mm10_v2_chr5_+_124483458_124483491	0.0432098	Foxk1_Foxj1	ENSMUST00000111453.1|Snrnp35|ENSMUSG00000029402.8|small nuclear ribonucleoprotein 35 (U11/U12)
mm10_v2_chr7_+_116093296_116093329	0.0431741	Foxk1_Foxj1	ENSMUST00000032899.5|1110004F10Rik|ENSMUSG00000030663.6|RIKEN cDNA 1110004F10 gene
mm10_v2_chr1_+_25830657_25830657	0.0425886	Foxk1_Foxj1	ENSMUST00000064487.1|Gm9884|ENSMUSG00000052558.1|predicted gene 9884
mm10_v2_chr1_+_9848375_9848398	0.0406152	Foxk1_Foxj1	ENSMUST00000097826.4|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr12_+_110485710_110485755	0.0400281	Foxk1_Foxj1	ENSMUST00000084985.3|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform 	ENSMUST00000109832.1|Ppp2r5c|ENSMUSG00000017843.7|protein phosphatase 2, regulatory subunit B (B56), gamma isoform
mm10_v2_chr8_-_22166412_22166435	0.0400001	Foxk1_Foxj1	ENSMUST00000033865.9|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3 	ENSMUST00000110730.3|Nek3|ENSMUSG00000031478.10|NIMA (never in mitosis gene a)-related expressed kinase 3
mm10_v2_chr7_+_81762947_81763050	0.0395494	Foxk1_Foxj1	ENSMUST00000133034.1|Fam103a1|ENSMUSG00000038646.7|family with sequence similarity 103, member A1
mm10_v2_chr10_+_69208546_69208557	0.0383841	Foxk1_Foxj1	ENSMUST00000164034.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chrX_+_86191764_86191782	0.0375225	Foxk1_Foxj1	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr4_+_107314363_107314397	0.0355675	Foxk1_Foxj1	ENSMUST00000075693.5|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000139527.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr6_-_83831736_83831750	0.0343312	Foxk1_Foxj1	ENSMUST00000058383.8|Paip2b|ENSMUSG00000045896.8|poly(A) binding protein interacting protein 2B
mm10_v2_chr8_+_71371283_71371359	0.0332718	Foxk1_Foxj1	ENSMUST00000110051.1|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1 	ENSMUST00000002469.8|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1 	ENSMUST00000110052.1|Ocel1|ENSMUSG00000002396.8|occludin/ELL domain containing 1
mm10_v2_chr2_+_52038005_52038020	0.0329258	Foxk1_Foxj1	ENSMUST00000065927.5|Tnfaip6|ENSMUSG00000053475.5|tumor necrosis factor alpha induced protein 6
mm10_v2_chr3_-_113630068_113630149	0.0317684	Foxk1_Foxj1	ENSMUST00000092154.3|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106536.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3 	ENSMUST00000106535.1|Rnpc3|ENSMUSG00000027981.8|RNA-binding region (RNP1, RRM) containing 3
mm10_v2_chr2_-_71367749_71367797	0.0300663	Foxk1_Foxj1	ENSMUST00000151937.1|Slc25a12|ENSMUSG00000027010.10|solute carrier family 25 (mitochondrial carrier, Aralar), member 12
mm10_v2_chr2_-_27475622_27475698	0.0287132	Foxk1_Foxj1	ENSMUST00000138693.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3 	ENSMUST00000113941.2|Brd3|ENSMUSG00000026918.10|bromodomain containing 3 	ENSMUST00000077737.6|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr9_+_114731177_114731234	0.0286789	Foxk1_Foxj1	ENSMUST00000035007.8|Cmtm6|ENSMUSG00000032434.8|CKLF-like MARVEL transmembrane domain containing 6
mm10_v2_chr12_+_55303241_55303286	0.028542	Foxk1_Foxj1	ENSMUST00000184766.1|1110008L16Rik|ENSMUSG00000021023.8|RIKEN cDNA 1110008L16 gene 	ENSMUST00000183475.1|1110008L16Rik|ENSMUSG00000021023.8|RIKEN cDNA 1110008L16 gene 	ENSMUST00000183654.1|1110008L16Rik|ENSMUSG00000021023.8|RIKEN cDNA 1110008L16 gene
mm10_v2_chr5_+_120116480_120116525	0.0280689	Foxk1_Foxj1	ENSMUST00000031590.8|Rbm19|ENSMUSG00000029594.9|RNA binding motif protein 19
mm10_v2_chr2_+_29802626_29802647	0.0279435	Foxk1_Foxj1	ENSMUST00000080065.2|Slc27a4|ENSMUSG00000059316.2|solute carrier family 27 (fatty acid transporter), member 4
mm10_v2_chr11_+_4895316_4895327	0.0244285	Foxk1_Foxj1	ENSMUST00000101615.2|Thoc5|ENSMUSG00000034274.5|THO complex 5
mm10_v2_chr17_-_33718591_33718690	0.0241691	Foxk1_Foxj1	ENSMUST00000174040.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173015.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000066121.6|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000172767.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173329.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr18_+_21001292_21001341	0.0230923	Foxk1_Foxj1	ENSMUST00000072847.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138 	ENSMUST00000052396.5|Rnf138|ENSMUSG00000024317.8|ring finger protein 138
mm10_v2_chr1_-_195131536_195131588	0.0224046	Foxk1_Foxj1	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr12_-_103425780_103425867	0.0216629	Foxk1_Foxj1	ENSMUST00000110001.2|Ddx24|ENSMUSG00000041645.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 	ENSMUST00000044923.7|Ddx24|ENSMUSG00000041645.7|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24
mm10_v2_chr1_+_57774842_57774932	0.0198909	Foxk1_Foxj1	ENSMUST00000167085.1|Spats2l|ENSMUSG00000038305.8|spermatogenesis associated, serine-rich 2-like
mm10_v2_chr15_+_78406777_78406801	0.0184497	Foxk1_Foxj1	ENSMUST00000169133.1|Mpst|ENSMUSG00000071711.5|mercaptopyruvate sulfurtransferase
mm10_v2_chr12_-_31950535_31950560	0.0181168	Foxk1_Foxj1	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr15_+_99392948_99393022	0.017855	Foxk1_Foxj1	ENSMUST00000161250.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000160635.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6 	ENSMUST00000161778.1|Tmbim6|ENSMUSG00000023010.8|transmembrane BAX inhibitor motif containing 6
mm10_v2_chr16_-_35871544_35871544	0.01493	Foxk1_Foxj1	ENSMUST00000042665.8|Parp14|ENSMUSG00000034422.8|poly (ADP-ribose) polymerase family, member 14
mm10_v2_chr1_+_88103229_88103252	0.0139915	Foxk1_Foxj1	ENSMUST00000113135.3|Ugt1a6a|ENSMUSG00000054545.11|UDP glucuronosyltransferase 1 family, polypeptide A6A 	ENSMUST00000113138.1|Ugt1a6b|ENSMUSG00000090145.1|UDP glucuronosyltransferase 1 family, polypeptide A6B
mm10_v2_chr12_-_82496537_82496537	0.0126551	Foxk1_Foxj1	ENSMUST00000179295.1|Gm5435|ENSMUSG00000094374.1|predicted gene 5435
mm10_v2_chr7_-_133123770_133123876	0.0125788	Foxk1_Foxj1	ENSMUST00000164896.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000171968.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr5_-_92348871_92348889	0.0106603	Foxk1_Foxj1	ENSMUST00000038816.6|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10 	ENSMUST00000118006.1|Cxcl10|ENSMUSG00000034855.7|chemokine (C-X-C motif) ligand 10
mm10_v2_chr16_-_52296924_52296924	0.00994679	Foxk1_Foxj1	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr2_-_152332639_152332678	0.00673441	Foxk1_Foxj1	ENSMUST00000028964.7|Rbck1|ENSMUSG00000027466.9|RanBP-type and C3HC4-type zinc finger containing 1
mm10_v2_chr2_+_79635416_79635441	0.00560423	Foxk1_Foxj1	ENSMUST00000111788.1|Ssfa2|ENSMUSG00000027007.10|sperm specific antigen 2
mm10_v2_chr18_-_3281036_3281132	0.00204227	Foxk1_Foxj1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr14_+_74640840_74640887	0.00015353	Foxk1_Foxj1	ENSMUST00000036653.3|Htr2a|ENSMUSG00000034997.4|5-hydroxytryptamine (serotonin) receptor 2A
