mm10_v2_chr14_-_30353468_30353535	5.49044	Foxq1	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chr18_-_89769479_89769558	3.42597	Foxq1	ENSMUST00000097495.3|Dok6|ENSMUSG00000073514.3|docking protein 6
mm10_v2_chr2_+_76406529_76406580	3.20427	Foxq1	ENSMUST00000111929.1|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000077972.4|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6 	ENSMUST00000111930.2|Osbpl6|ENSMUSG00000042359.12|oxysterol binding protein-like 6
mm10_v2_chr16_+_43363855_43363888	3.023	Foxq1	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_+_110772604_110772754	2.92876	Foxq1	ENSMUST00000005829.6|Ampd3|ENSMUSG00000005686.10|adenosine monophosphate deaminase 3
mm10_v2_chr1_-_170110491_170110532	2.89151	Foxq1	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr5_-_122002340_122002368	2.70111	Foxq1	ENSMUST00000134326.1|Cux2|ENSMUSG00000042589.12|cut-like homeobox 2
mm10_v2_chr10_+_60106452_60106468	2.51312	Foxq1	ENSMUST00000165024.2|Spock2|ENSMUSG00000058297.10|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2
mm10_v2_chr16_+_43364145_43364204	2.49014	Foxq1	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_+_122643878_122644009	2.48395	Foxq1	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr4_-_129121889_129122063	2.47172	Foxq1	ENSMUST00000139450.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000125931.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000116444.2|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr7_+_45783883_45783947	2.30142	Foxq1	ENSMUST00000072580.5|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr18_+_37496997_37496997	2.27824	Foxq1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr2_-_77519565_77519647	2.25895	Foxq1	ENSMUST00000111830.2|Zfp385b|ENSMUSG00000027016.11|zinc finger protein 385B
mm10_v2_chrX_-_103483205_103483225	2.19255	Foxq1	ENSMUST00000127786.2|Xist|ENSMUSG00000086503.2|inactive X specific transcripts
mm10_v2_chr17_+_35076902_35077073	2.14956	Foxq1	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr19_-_28963863_28963908	2.10611	Foxq1	ENSMUST00000161813.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr18_+_51117754_51117898	2.01661	Foxq1	ENSMUST00000116639.2|Prr16|ENSMUSG00000073565.4|proline rich 16
mm10_v2_chr7_+_19176416_19176440	2.01201	Foxq1	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr15_-_58214882_58214926	1.97939	Foxq1	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr4_-_87806276_87806294	1.79279	Foxq1	ENSMUST00000148059.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr4_-_87806296_87806325	1.76093	Foxq1	ENSMUST00000126353.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 	ENSMUST00000149357.1|Mllt3|ENSMUSG00000028496.11|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
mm10_v2_chr18_+_37489465_37489465	1.70816	Foxq1	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr18_+_37442517_37442517	1.64342	Foxq1	ENSMUST00000056915.1|Pcdhb13|ENSMUSG00000047307.1|protocadherin beta 13
mm10_v2_chr18_+_69344503_69344530	1.62059	Foxq1	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr18_+_37477768_37477835	1.61154	Foxq1	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr17_+_35077080_35077155	1.57996	Foxq1	ENSMUST00000172959.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr3_+_68584154_68584181	1.54031	Foxq1	ENSMUST00000182997.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr14_-_36935560_36935578	1.50833	Foxq1	ENSMUST00000183038.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr2_+_120977017_120977107	1.39124	Foxq1	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr10_+_34297421_34297513	1.37553	Foxq1	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr9_-_112187766_112187862	1.33202	Foxq1	ENSMUST00000111872.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000164754.2|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr1_+_156838915_156838978	1.22244	Foxq1	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr13_-_21453714_21453761	1.17202	Foxq1	ENSMUST00000032820.7|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26 	ENSMUST00000110485.1|Zscan26|ENSMUSG00000022228.7|zinc finger and SCAN domain containing 26
mm10_v2_chr8_-_84773381_84773427	1.17095	Foxq1	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr6_-_39725448_39725478	1.16011	Foxq1	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr8_+_25911670_25911692	1.11743	Foxq1	ENSMUST00000120653.1|Kcnu1|ENSMUSG00000031576.9|potassium channel, subfamily U, member 1 	ENSMUST00000126226.1|Kcnu1|ENSMUSG00000031576.9|potassium channel, subfamily U, member 1
mm10_v2_chr5_-_123140135_123140289	1.09502	Foxq1	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr10_+_69925954_69926133	1.07651	Foxq1	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr18_+_37518341_37518359	1.05781	Foxq1	ENSMUST00000097609.1|Pcdhb22|ENSMUSG00000073591.3|protocadherin beta 22
mm10_v2_chrX_-_70365052_70365112	1.05259	Foxq1	ENSMUST00000101509.2|Ids|ENSMUSG00000035847.9|iduronate 2-sulfatase
mm10_v2_chr2_-_6722187_6722236	1.00817	Foxq1	ENSMUST00000182657.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr15_-_89196457_89196478	0.978808	Foxq1	ENSMUST00000078953.7|Dennd6b|ENSMUSG00000015377.9|DENN/MADD domain containing 6B
mm10_v2_chr13_-_67061131_67061178	0.976678	Foxq1	ENSMUST00000167565.1|Zfp712|ENSMUSG00000090641.1|zinc finger protein 712
mm10_v2_chr15_+_97247011_97247107	0.973299	Foxq1	ENSMUST00000059433.6|Pced1b|ENSMUSG00000044250.7|PC-esterase domain containing 1B
mm10_v2_chr3_+_7366598_7366641	0.960659	Foxq1	ENSMUST00000028999.6|Pkia|ENSMUSG00000027499.7|protein kinase inhibitor, alpha
mm10_v2_chr1_-_132707304_132707326	0.955959	Foxq1	ENSMUST00000043189.7|Nfasc|ENSMUSG00000026442.8|neurofascin
mm10_v2_chr2_-_7395879_7395912	0.950507	Foxq1	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr13_-_67637776_67637801	0.911393	Foxq1	ENSMUST00000012314.8|A530054K11Rik|ENSMUSG00000021510.10|RIKEN cDNA A530054K11 gene
mm10_v2_chr18_+_37447641_37447674	0.895706	Foxq1	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr19_-_56822161_56822220	0.890365	Foxq1	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr17_-_32822200_32822200	0.877091	Foxq1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr3_-_146781351_146781431	0.876424	Foxq1	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr1_+_89454769_89454885	0.847109	Foxq1	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr1_-_6215292_6215292	0.793083	Foxq1	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr14_+_124005355_124005355	0.786459	Foxq1	ENSMUST00000166105.1|Gm17615|ENSMUSG00000090286.1|predicted gene, 17615
mm10_v2_chr11_-_107348130_107348179	0.749248	Foxq1	ENSMUST00000134763.1|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr10_+_42860776_42860810	0.742484	Foxq1	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr7_+_24134148_24134184	0.728881	Foxq1	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr15_-_97247287_97247315	0.725638	Foxq1	ENSMUST00000053106.5|Amigo2|ENSMUSG00000048218.5|adhesion molecule with Ig like domain 2
mm10_v2_chr2_-_181581996_181582008	0.707825	Foxq1	ENSMUST00000057816.8|Uckl1|ENSMUSG00000089917.1|uridine-cytidine kinase 1-like 1
mm10_v2_chr9_+_50494516_50494533	0.686115	Foxq1	ENSMUST00000114474.1|1600029D21Rik|ENSMUSG00000032068.8|RIKEN cDNA 1600029D21 gene
mm10_v2_chr5_-_146220901_146220987	0.644811	Foxq1	ENSMUST00000169407.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000161331.1|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000159074.2|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6 	ENSMUST00000067837.3|Rnf6|ENSMUSG00000029634.9|ring finger protein (C3H2C3 type) 6
mm10_v2_chr18_+_57468478_57468541	0.592124	Foxq1	ENSMUST00000091892.2|Ctxn3|ENSMUSG00000069372.2|cortexin 3
mm10_v2_chr4_+_139622842_139622902	0.560433	Foxq1	ENSMUST00000039818.9|Aldh4a1|ENSMUSG00000028737.9|aldehyde dehydrogenase 4 family, member A1
mm10_v2_chr17_+_31433054_31433071	0.550512	Foxq1	ENSMUST00000136384.1|Pde9a|ENSMUSG00000041119.5|phosphodiesterase 9A
mm10_v2_chr8_+_93810832_93810843	0.550104	Foxq1	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr12_-_101958148_101958246	0.545247	Foxq1	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr19_-_43674844_43674909	0.54402	Foxq1	ENSMUST00000046038.7|Slc25a28|ENSMUSG00000040414.7|solute carrier family 25, member 28
mm10_v2_chr3_-_36053512_36053547	0.539432	Foxq1	ENSMUST00000166644.2|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B 	ENSMUST00000062056.8|Ccdc144b|ENSMUSG00000047696.10|coiled-coil domain containing 144B
mm10_v2_chr4_+_108479081_108479224	0.514165	Foxq1	ENSMUST00000155068.1|Zcchc11|ENSMUSG00000034610.8|zinc finger, CCHC domain containing 11
mm10_v2_chr12_+_33314277_33314328	0.480594	Foxq1	ENSMUST00000133549.1|Atxn7l1|ENSMUSG00000020564.10|ataxin 7-like 1
mm10_v2_chr3_+_122419772_122419787	0.437007	Foxq1	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr11_-_62392605_62392659	0.434723	Foxq1	ENSMUST00000151498.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1 	ENSMUST00000159069.1|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr3_+_129532386_129532440	0.417894	Foxq1	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr10_+_90576252_90576517	0.409044	Foxq1	ENSMUST00000182427.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182053.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182113.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr3_+_136670076_136670186	0.401347	Foxq1	ENSMUST00000070198.7|Ppp3ca|ENSMUSG00000028161.11|protein phosphatase 3, catalytic subunit, alpha isoform
mm10_v2_chr3_+_79884496_79884571	0.381624	Foxq1	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr3_+_135825648_135825664	0.381223	Foxq1	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr1_-_43098622_43098686	0.37655	Foxq1	ENSMUST00000095014.1|Tgfbrap1|ENSMUSG00000070939.3|transforming growth factor, beta receptor associated protein 1
mm10_v2_chr9_-_110375430_110375430	0.357905	Foxq1	ENSMUST00000168137.1|5830462I19Rik|ENSMUSG00000091102.1|RIKEN cDNA 5830462I19 gene
mm10_v2_chr12_+_77238093_77238122	0.356095	Foxq1	ENSMUST00000177595.1|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8 	ENSMUST00000171770.2|Fut8|ENSMUSG00000021065.9|fucosyltransferase 8
mm10_v2_chr18_-_3281036_3281132	0.335455	Foxq1	ENSMUST00000049942.6|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000139537.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator 	ENSMUST00000124747.1|Crem|ENSMUSG00000063889.10|cAMP responsive element modulator
mm10_v2_chr4_+_97772734_97772848	0.334854	Foxq1	ENSMUST00000152023.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr10_+_42860648_42860676	0.333207	Foxq1	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_+_112284561_112284610	0.322789	Foxq1	ENSMUST00000053666.7|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr3_+_79884576_79884597	0.31534	Foxq1	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr3_+_53488677_53488727	0.31374	Foxq1	ENSMUST00000029307.3|Stoml3|ENSMUSG00000027744.3|stomatin (Epb7.2)-like 3
mm10_v2_chr2_+_178141920_178141939	0.309407	Foxq1	ENSMUST00000103066.3|Phactr3|ENSMUSG00000027525.11|phosphatase and actin regulator 3
mm10_v2_chr7_+_120677579_120677630	0.296887	Foxq1	ENSMUST00000060175.6|BC030336|ENSMUSG00000046096.6|cDNA sequence BC030336
mm10_v2_chr1_+_51289106_51289142	0.29497	Foxq1	ENSMUST00000051572.6|Sdpr|ENSMUSG00000045954.6|serum deprivation response
mm10_v2_chr10_+_80755196_80755239	0.294801	Foxq1	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr2_-_37647199_37647285	0.287811	Foxq1	ENSMUST00000028279.3|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr5_-_99252839_99252927	0.275189	Foxq1	ENSMUST00000168092.1|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B 	ENSMUST00000031276.8|Rasgef1b|ENSMUSG00000029333.8|RasGEF domain family, member 1B
mm10_v2_chr15_+_85510812_85510812	0.251589	Foxq1	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr4_-_119174178_119174221	0.222105	Foxq1	ENSMUST00000106355.3|Zfp691|ENSMUSG00000045268.7|zinc finger protein 691
mm10_v2_chrX_+_38600626_38600691	0.217503	Foxq1	ENSMUST00000000365.2|Mcts1|ENSMUSG00000000355.7|malignant T cell amplified sequence 1
mm10_v2_chr2_+_60209887_60210073	0.212179	Foxq1	ENSMUST00000102748.4|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7 	ENSMUST00000102747.1|March7|ENSMUSG00000026977.11|membrane-associated ring finger (C3HC4) 7
mm10_v2_chr7_-_100932140_100932200	0.20859	Foxq1	ENSMUST00000107032.1|Arhgef17|ENSMUSG00000032875.7|Rho guanine nucleotide exchange factor (GEF) 17
mm10_v2_chr2_-_91255995_91256047	0.197545	Foxq1	ENSMUST00000180732.1|Gm17281|ENSMUSG00000097317.1|predicted gene, 17281
mm10_v2_chr12_+_111166485_111166520	0.191766	Foxq1	ENSMUST00000139162.1|Traf3|ENSMUSG00000021277.10|TNF receptor-associated factor 3
mm10_v2_chr14_-_103844173_103844198	0.190967	Foxq1	ENSMUST00000022718.3|Ednrb|ENSMUSG00000022122.8|endothelin receptor type B
mm10_v2_chr16_-_92400067_92400083	0.17041	Foxq1	ENSMUST00000023672.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr15_-_102189032_102189050	0.161055	Foxq1	ENSMUST00000023805.1|Csad|ENSMUSG00000023044.1|cysteine sulfinic acid decarboxylase
mm10_v2_chr1_+_87404916_87404964	0.158593	Foxq1	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr4_+_32243733_32243733	0.157518	Foxq1	ENSMUST00000165661.1|D130062J21Rik|ENSMUSG00000090278.1|RIKEN cDNA D130062J21 gene
mm10_v2_chr11_+_16257706_16257808	0.149065	Foxq1	ENSMUST00000109645.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A 	ENSMUST00000109647.2|Vstm2a|ENSMUSG00000048834.9|V-set and transmembrane domain containing 2A
mm10_v2_chr12_-_104865076_104865138	0.134765	Foxq1	ENSMUST00000109937.1|Clmn|ENSMUSG00000021097.8|calmin 	ENSMUST00000109936.1|Clmn|ENSMUSG00000021097.8|calmin
mm10_v2_chr12_-_110840905_110840950	0.131412	Foxq1	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr3_-_57301919_57301956	0.127371	Foxq1	ENSMUST00000029376.8|Tm4sf1|ENSMUSG00000027800.8|transmembrane 4 superfamily member 1
mm10_v2_chr1_+_33719863_33719901	0.123969	Foxq1	ENSMUST00000088287.3|Rab23|ENSMUSG00000004768.8|RAB23, member RAS oncogene family
mm10_v2_chr9_+_15239045_15239155	0.12325	Foxq1	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr8_-_53638945_53639065	0.0978906	Foxq1	ENSMUST00000047768.4|Neil3|ENSMUSG00000039396.4|nei like 3 (E. coli)
mm10_v2_chr11_-_70410010_70410042	0.071714	Foxq1	ENSMUST00000019065.3|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1 	ENSMUST00000135148.1|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1
mm10_v2_chr6_-_48086530_48086658	0.070222	Foxq1	ENSMUST00000073124.6|Zfp746|ENSMUSG00000057691.6|zinc finger protein 746
mm10_v2_chr2_-_176917518_176917518	0.0611803	Foxq1	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr4_+_107314363_107314397	0.052473	Foxq1	ENSMUST00000075693.5|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1 	ENSMUST00000139527.1|Yipf1|ENSMUSG00000057375.7|Yip1 domain family, member 1
mm10_v2_chr16_+_91391721_91391721	0.0524134	Foxq1	ENSMUST00000160764.1|Gm21970|ENSMUSG00000093701.1|predicted gene 21970
mm10_v2_chr3_+_19957037_19957073	0.0328209	Foxq1	ENSMUST00000091309.5|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000108329.1|Cp|ENSMUSG00000003617.10|ceruloplasmin 	ENSMUST00000003714.6|Cp|ENSMUSG00000003617.10|ceruloplasmin
mm10_v2_chr5_+_107597760_107597784	0.0321865	Foxq1	ENSMUST00000112655.1|Rpap2|ENSMUSG00000033773.8|RNA polymerase II associated protein 2
mm10_v2_chr9_+_70678950_70679010	0.0108228	Foxq1	ENSMUST00000067880.6|Adam10|ENSMUSG00000054693.8|a disintegrin and metallopeptidase domain 10
mm10_v2_chr1_+_43098710_43098760	0.0102193	Foxq1	ENSMUST00000010434.7|AI597479|ENSMUSG00000010290.7|expressed sequence AI597479
mm10_v2_chr19_-_6080311_6080336	0.00725069	Foxq1	ENSMUST00000159832.1|Vps51|ENSMUSG00000024797.6|vacuolar protein sorting 51 homolog (S. cerevisiae)
mm10_v2_chr5_+_25247344_25247363	0.00715391	Foxq1	ENSMUST00000114950.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
