mm10_v2_chr16_+_91225550_91225579	1.75554	Hoxa9_Hoxb9	ENSMUST00000035608.8|Olig2|ENSMUSG00000039830.8|oligodendrocyte transcription factor 2
mm10_v2_chr15_+_25773985_25774042	1.49176	Hoxa9_Hoxb9	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr19_-_57197435_57197460	1.25036	Hoxa9_Hoxb9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr3_+_108591279_108591414	1.23624	Hoxa9_Hoxb9	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr19_-_57197377_57197417	1.19143	Hoxa9_Hoxb9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_7341848_7341863	1.11227	Hoxa9_Hoxb9	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr6_+_49822710_49822727	0.963388	Hoxa9_Hoxb9	ENSMUST00000031843.6|Npy|ENSMUSG00000029819.6|neuropeptide Y
mm10_v2_chr2_+_22622183_22622205	0.915476	Hoxa9_Hoxb9	ENSMUST00000028123.3|Gad2|ENSMUSG00000026787.3|glutamic acid decarboxylase 2
mm10_v2_chr5_-_73191848_73191922	0.904779	Hoxa9_Hoxb9	ENSMUST00000176910.1|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr11_-_79504078_79504089	0.82017	Hoxa9_Hoxb9	ENSMUST00000164465.2|Omg|ENSMUSG00000049612.10|oligodendrocyte myelin glycoprotein
mm10_v2_chr1_+_66386968_66386999	0.743544	Hoxa9_Hoxb9	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr1_+_194619815_194619833	0.727937	Hoxa9_Hoxb9	ENSMUST00000027952.5|Plxna2|ENSMUSG00000026640.6|plexin A2
mm10_v2_chr9_+_121366958_121367042	0.697618	Hoxa9_Hoxb9	ENSMUST00000045903.6|Trak1|ENSMUSG00000032536.9|trafficking protein, kinesin binding 1
mm10_v2_chr7_+_56050135_56050217	0.67861	Hoxa9_Hoxb9	ENSMUST00000076226.6|Herc2|ENSMUSG00000030451.9|hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2
mm10_v2_chr19_+_44203265_44203288	0.663456	Hoxa9_Hoxb9	ENSMUST00000026220.5|Scd3|ENSMUSG00000025202.7|stearoyl-coenzyme A desaturase 3
mm10_v2_chr14_+_20674311_20674371	0.638262	Hoxa9_Hoxb9	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr15_+_81936911_81936982	0.633297	Hoxa9_Hoxb9	ENSMUST00000135663.1|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr4_+_144893127_144893151	0.587064	Hoxa9_Hoxb9	ENSMUST00000142808.1|Dhrs3|ENSMUSG00000066026.8|dehydrogenase/reductase (SDR family) member 3
mm10_v2_chr13_+_16014457_16014475	0.565693	Hoxa9_Hoxb9	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr11_-_109298066_109298079	0.561215	Hoxa9_Hoxb9	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr2_-_27463994_27464116	0.555025	Hoxa9_Hoxb9	ENSMUST00000164296.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chr17_-_6621267_6621267	0.523576	Hoxa9_Hoxb9	ENSMUST00000115772.3|Tmem181c-ps|ENSMUSG00000093880.1|transmembrane protein 181C, pseudogene
mm10_v2_chr19_-_57197496_57197536	0.522495	Hoxa9_Hoxb9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr3_+_98280427_98280444	0.492062	Hoxa9_Hoxb9	ENSMUST00000090746.2|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 	ENSMUST00000120541.1|Hmgcs2|ENSMUSG00000027875.6|3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2
mm10_v2_chr14_-_70323783_70323814	0.484877	Hoxa9_Hoxb9	ENSMUST00000151011.1|Slc39a14|ENSMUSG00000022094.9|solute carrier family 39 (zinc transporter), member 14
mm10_v2_chr2_-_45112890_45113010	0.453723	Hoxa9_Hoxb9	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr19_+_56548254_56548283	0.441592	Hoxa9_Hoxb9	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr7_-_45870928_45870986	0.440673	Hoxa9_Hoxb9	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr18_+_37400845_37400886	0.4205	Hoxa9_Hoxb9	ENSMUST00000057228.1|Pcdhb9|ENSMUSG00000051242.1|protocadherin beta 9
mm10_v2_chr5_-_107869153_107869175	0.411276	Hoxa9_Hoxb9	ENSMUST00000128723.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5 	ENSMUST00000124034.1|Evi5|ENSMUSG00000011831.10|ecotropic viral integration site 5
mm10_v2_chr5_-_66514815_66514837	0.392875	Hoxa9_Hoxb9	ENSMUST00000161879.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2 	ENSMUST00000159357.1|Apbb2|ENSMUSG00000029207.10|amyloid beta (A4) precursor protein-binding, family B, member 2
mm10_v2_chr7_+_110768169_110768206	0.387553	Hoxa9_Hoxb9	ENSMUST00000170374.1|Ampd3|ENSMUSG00000005686.10|adenosine monophosphate deaminase 3
mm10_v2_chr2_-_33087169_33087253	0.384924	Hoxa9_Hoxb9	ENSMUST00000102810.3|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr17_-_45572495_45572555	0.376959	Hoxa9_Hoxb9	ENSMUST00000130406.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1
mm10_v2_chr7_-_127449109_127449166	0.37222	Hoxa9_Hoxb9	ENSMUST00000053392.4|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr9_+_92309362_92309386	0.368108	Hoxa9_Hoxb9	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr19_-_57197556_57197631	0.359563	Hoxa9_Hoxb9	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr5_-_32746317_32746411	0.3458	Hoxa9_Hoxb9	ENSMUST00000135248.1|Pisd|ENSMUSG00000023452.12|phosphatidylserine decarboxylase
mm10_v2_chr1_+_89454769_89454885	0.335335	Hoxa9_Hoxb9	ENSMUST00000027521.8|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 	ENSMUST00000074945.5|Agap1|ENSMUSG00000055013.8|ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
mm10_v2_chr7_-_127448993_127449077	0.320048	Hoxa9_Hoxb9	ENSMUST00000106299.1|Zfp689|ENSMUSG00000048921.5|zinc finger protein 689
mm10_v2_chr19_-_56548013_56548046	0.308188	Hoxa9_Hoxb9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr18_+_37655891_37655915	0.305302	Hoxa9_Hoxb9	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr8_+_120488416_120488490	0.287663	Hoxa9_Hoxb9	ENSMUST00000034279.9|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chr5_-_145201829_145201873	0.280378	Hoxa9_Hoxb9	ENSMUST00000162220.1|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14 	ENSMUST00000031632.8|Zkscan14|ENSMUSG00000029627.11|zinc finger with KRAB and SCAN domains 14
mm10_v2_chr11_-_109298090_109298118	0.277132	Hoxa9_Hoxb9	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr15_+_81936753_81936839	0.275946	Hoxa9_Hoxb9	ENSMUST00000038757.7|Csdc2|ENSMUSG00000042109.7|cold shock domain containing C2, RNA binding
mm10_v2_chr6_-_143947061_143947088	0.274371	Hoxa9_Hoxb9	ENSMUST00000124233.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr17_-_15826521_15826590	0.259052	Hoxa9_Hoxb9	ENSMUST00000170578.1|Rgmb|ENSMUSG00000048027.7|RGM domain family, member B
mm10_v2_chr4_+_115737754_115737810	0.255558	Hoxa9_Hoxb9	ENSMUST00000106522.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chr19_-_50678642_50678702	0.255039	Hoxa9_Hoxb9	ENSMUST00000072685.6|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1 	ENSMUST00000164039.2|Sorcs1|ENSMUSG00000043531.9|VPS10 domain receptor protein SORCS 1
mm10_v2_chr4_+_115737738_115737752	0.254765	Hoxa9_Hoxb9	ENSMUST00000106525.2|Efcab14|ENSMUSG00000034210.7|EF-hand calcium binding domain 14
mm10_v2_chrX_+_159303266_159303281	0.249721	Hoxa9_Hoxb9	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr3_+_66985680_66985692	0.242533	Hoxa9_Hoxb9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr3_-_96905294_96905346	0.240285	Hoxa9_Hoxb9	ENSMUST00000029738.7|Gpr89|ENSMUSG00000028096.7|G protein-coupled receptor 89
mm10_v2_chrX_+_159840463_159840481	0.240183	Hoxa9_Hoxb9	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr8_+_93810832_93810843	0.23829	Hoxa9_Hoxb9	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr4_+_133130505_133130590	0.234224	Hoxa9_Hoxb9	ENSMUST00000084241.5|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2 	ENSMUST00000138831.1|Wasf2|ENSMUSG00000028868.7|WAS protein family, member 2
mm10_v2_chr3_+_138065052_138065078	0.231418	Hoxa9_Hoxb9	ENSMUST00000163080.2|1110002E22Rik|ENSMUSG00000090066.2|RIKEN cDNA 1110002E22 gene
mm10_v2_chr7_+_28277706_28277770	0.219854	Hoxa9_Hoxb9	ENSMUST00000094651.2|Eid2b|ENSMUSG00000070705.2|EP300 interacting inhibitor of differentiation 2B
mm10_v2_chr2_-_33086366_33086447	0.218422	Hoxa9_Hoxb9	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr7_-_130772652_130772652	0.210374	Hoxa9_Hoxb9	ENSMUST00000057134.4|Etos1|ENSMUSG00000050189.4|ectopic ossification 1
mm10_v2_chr16_+_10812915_10812915	0.200132	Hoxa9_Hoxb9	ENSMUST00000115822.1|Gm11172|ENSMUSG00000079740.1|predicted gene 11172
mm10_v2_chr6_-_143947092_143947111	0.199464	Hoxa9_Hoxb9	ENSMUST00000144289.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000111748.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr6_-_97148908_97148930	0.198584	Hoxa9_Hoxb9	ENSMUST00000142116.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase 	ENSMUST00000113387.1|Eogt|ENSMUSG00000035245.6|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase
mm10_v2_chr2_-_51149100_51149115	0.186819	Hoxa9_Hoxb9	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr8_+_112570043_112570060	0.184333	Hoxa9_Hoxb9	ENSMUST00000034225.6|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4 	ENSMUST00000118171.1|Cntnap4|ENSMUSG00000031772.11|contactin associated protein-like 4
mm10_v2_chr12_-_100159601_100159672	0.181738	Hoxa9_Hoxb9	ENSMUST00000021596.7|Nrde2|ENSMUSG00000021179.7|nrde-2 necessary for RNA interference, domain containing
mm10_v2_chr5_+_137787769_137787807	0.181273	Hoxa9_Hoxb9	ENSMUST00000035852.7|Zcwpw1|ENSMUSG00000037108.7|zinc finger, CW type with PWWP domain 1
mm10_v2_chr18_-_31317043_31317133	0.179501	Hoxa9_Hoxb9	ENSMUST00000139924.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2 	ENSMUST00000153060.1|Rit2|ENSMUSG00000057455.6|Ras-like without CAAX 2
mm10_v2_chr1_-_105659008_105659008	0.179081	Hoxa9_Hoxb9	ENSMUST00000070699.8|Pign|ENSMUSG00000056536.8|phosphatidylinositol glycan anchor biosynthesis, class N
mm10_v2_chr4_-_49597860_49597892	0.162684	Hoxa9_Hoxb9	ENSMUST00000042750.2|Tmem246|ENSMUSG00000039611.2|transmembrane protein 246
mm10_v2_chr3_-_113574242_113574272	0.151834	Hoxa9_Hoxb9	ENSMUST00000142505.2|Amy1|ENSMUSG00000074264.6|amylase 1, salivary
mm10_v2_chr9_+_75311395_75311395	0.148799	Hoxa9_Hoxb9	ENSMUST00000076889.6|Gnb5|ENSMUSG00000032192.8|guanine nucleotide binding protein (G protein), beta 5
mm10_v2_chr3_+_118562129_118562156	0.148231	Hoxa9_Hoxb9	ENSMUST00000039177.7|Dpyd|ENSMUSG00000033308.10|dihydropyrimidine dehydrogenase
mm10_v2_chr11_-_115933464_115933498	0.146213	Hoxa9_Hoxb9	ENSMUST00000021097.3|Recql5|ENSMUSG00000020752.5|RecQ protein-like 5
mm10_v2_chr9_+_122351555_122351608	0.137976	Hoxa9_Hoxb9	ENSMUST00000156520.1|Abhd5|ENSMUSG00000032540.9|abhydrolase domain containing 5
mm10_v2_chr8_+_27042555_27042589	0.136918	Hoxa9_Hoxb9	ENSMUST00000033875.8|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed 	ENSMUST00000098851.4|Prosc|ENSMUSG00000031485.8|proline synthetase co-transcribed
mm10_v2_chr17_-_29007925_29007962	0.135943	Hoxa9_Hoxb9	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr17_+_33638056_33638110	0.135102	Hoxa9_Hoxb9	ENSMUST00000052079.7|Pram1|ENSMUSG00000032739.10|PML-RAR alpha-regulated adaptor molecule 1
mm10_v2_chr18_+_12599894_12599926	0.134715	Hoxa9_Hoxb9	ENSMUST00000169401.1|Ttc39c|ENSMUSG00000024424.8|tetratricopeptide repeat domain 39C
mm10_v2_chr5_+_31452427_31452452	0.13118	Hoxa9_Hoxb9	ENSMUST00000076264.4|Zfp512|ENSMUSG00000062761.4|zinc finger protein 512
mm10_v2_chr11_-_109472611_109472688	0.118741	Hoxa9_Hoxb9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr4_+_74013442_74013674	0.117398	Hoxa9_Hoxb9	ENSMUST00000098006.2|Frmd3|ENSMUSG00000049122.11|FERM domain containing 3 	ENSMUST00000084474.5|Frmd3|ENSMUSG00000049122.11|FERM domain containing 3
mm10_v2_chr2_-_67433181_67433181	0.115862	Hoxa9_Hoxb9	ENSMUST00000180773.1|Gm26727|ENSMUSG00000097112.1|predicted gene, 26727
mm10_v2_chr3_+_66985947_66985986	0.112165	Hoxa9_Hoxb9	ENSMUST00000161726.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000160504.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr5_+_145204523_145204668	0.111952	Hoxa9_Hoxb9	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr5_+_34999111_34999184	0.107451	Hoxa9_Hoxb9	ENSMUST00000114283.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr3_+_84952146_84952186	0.103538	Hoxa9_Hoxb9	ENSMUST00000029727.7|Fbxw7|ENSMUSG00000028086.8|F-box and WD-40 domain protein 7
mm10_v2_chr2_+_180967291_180967303	0.0977868	Hoxa9_Hoxb9	ENSMUST00000108859.1|Arfgap1|ENSMUSG00000027575.13|ADP-ribosylation factor GTPase activating protein 1
mm10_v2_chr15_+_85510812_85510812	0.0975166	Hoxa9_Hoxb9	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr7_+_28693997_28694019	0.0958695	Hoxa9_Hoxb9	ENSMUST00000108280.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr2_-_58052832_58052870	0.0934456	Hoxa9_Hoxb9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr18_-_31447383_31447415	0.0927135	Hoxa9_Hoxb9	ENSMUST00000025110.3|Syt4|ENSMUSG00000024261.5|synaptotagmin IV
mm10_v2_chr3_-_95106907_95106930	0.092549	Hoxa9_Hoxb9	ENSMUST00000107233.2|Pip5k1a|ENSMUSG00000028126.10|phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha
mm10_v2_chr2_-_177267036_177267036	0.091182	Hoxa9_Hoxb9	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr10_+_3872667_3872788	0.0891684	Hoxa9_Hoxb9	ENSMUST00000136671.1|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1 	ENSMUST00000042438.6|Plekhg1|ENSMUSG00000040624.11|pleckstrin homology domain containing, family G (with RhoGef domain) member 1
mm10_v2_chr3_+_32436376_32436376	0.0878388	Hoxa9_Hoxb9	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr19_-_45812291_45812307	0.0876547	Hoxa9_Hoxb9	ENSMUST00000086993.4|Kcnip2|ENSMUSG00000025221.9|Kv channel-interacting protein 2
mm10_v2_chr3_+_66985647_66985678	0.0865256	Hoxa9_Hoxb9	ENSMUST00000162362.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000065074.7|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr2_+_32395896_32395896	0.0810104	Hoxa9_Hoxb9	ENSMUST00000028162.3|Ptges2|ENSMUSG00000026820.3|prostaglandin E synthase 2
mm10_v2_chr17_-_34862473_34862535	0.0785089	Hoxa9_Hoxb9	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr1_+_59256906_59256907	0.0773142	Hoxa9_Hoxb9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr8_+_9977707_9977725	0.072683	Hoxa9_Hoxb9	ENSMUST00000139793.1|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13 	ENSMUST00000048216.5|Abhd13|ENSMUSG00000040396.6|abhydrolase domain containing 13
mm10_v2_chr19_-_7341792_7341829	0.0698038	Hoxa9_Hoxb9	ENSMUST00000164205.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000165286.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000168324.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2 	ENSMUST00000032557.8|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr15_-_51991679_51991760	0.0696208	Hoxa9_Hoxb9	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr19_-_56548122_56548222	0.0657146	Hoxa9_Hoxb9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr6_+_51523901_51523941	0.0641649	Hoxa9_Hoxb9	ENSMUST00000049152.8|Snx10|ENSMUSG00000038301.9|sorting nexin 10
mm10_v2_chr9_-_107770945_107771007	0.0525191	Hoxa9_Hoxb9	ENSMUST00000183248.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182022.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000035199.6|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5 	ENSMUST00000182659.1|Rbm5|ENSMUSG00000032580.6|RNA binding motif protein 5
mm10_v2_chr12_+_112620030_112620056	0.0484817	Hoxa9_Hoxb9	ENSMUST00000180015.1|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1 	ENSMUST00000021726.6|Adssl1|ENSMUSG00000011148.7|adenylosuccinate synthetase like 1
mm10_v2_chr1_-_97761538_97761609	0.0363768	Hoxa9_Hoxb9	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr5_+_34999070_34999086	0.0346033	Hoxa9_Hoxb9	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr8_-_111992258_111992302	0.0281665	Hoxa9_Hoxb9	ENSMUST00000034427.5|Adat1|ENSMUSG00000031949.11|adenosine deaminase, tRNA-specific 1 	ENSMUST00000139820.1|Adat1|ENSMUSG00000031949.11|adenosine deaminase, tRNA-specific 1
mm10_v2_chr5_-_62766153_62766246	0.0252652	Hoxa9_Hoxb9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr9_+_45055166_45055195	0.0236459	Hoxa9_Hoxb9	ENSMUST00000114664.1|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3 	ENSMUST00000093856.3|Mpzl3|ENSMUSG00000070305.4|myelin protein zero-like 3
mm10_v2_chr3_+_66985700_66985740	0.0186336	Hoxa9_Hoxb9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr4_-_4793275_4793382	0.0094466	Hoxa9_Hoxb9	ENSMUST00000084949.2|Impad1|ENSMUSG00000066324.2|inositol monophosphatase domain containing 1
mm10_v2_chr2_+_125136692_125136769	0.00630117	Hoxa9_Hoxb9	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
