mm10_v2_chr9_+_35423582_35423589	2.34817	Hoxc9	ENSMUST00000154652.1|Cdon|ENSMUSG00000038119.8|cell adhesion molecule-related/down-regulated by oncogenes
mm10_v2_chr18_+_65582239_65582275	1.77026	Hoxc9	ENSMUST00000182684.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr10_+_4710119_4710166	1.76862	Hoxc9	ENSMUST00000105588.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000105589.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr2_-_26516620_26516663	1.62134	Hoxc9	ENSMUST00000132820.1|Notch1|ENSMUSG00000026923.9|notch 1
mm10_v2_chrX_+_56609751_56609797	1.51207	Hoxc9	ENSMUST00000144068.1|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr6_-_99044414_99044459	1.36881	Hoxc9	ENSMUST00000177507.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1 	ENSMUST00000123992.1|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr18_+_65582281_65582310	1.21672	Hoxc9	ENSMUST00000183319.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr4_+_100776664_100776692	1.11005	Hoxc9	ENSMUST00000030257.8|Cachd1|ENSMUSG00000028532.8|cache domain containing 1 	ENSMUST00000097955.2|Cachd1|ENSMUSG00000028532.8|cache domain containing 1
mm10_v2_chrX_-_143933089_143933142	0.967451	Hoxc9	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr7_-_116038734_116038750	0.853961	Hoxc9	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr2_+_4300462_4300522	0.833616	Hoxc9	ENSMUST00000175669.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr2_-_84650714_84650749	0.793317	Hoxc9	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr18_+_65582390_65582613	0.762963	Hoxc9	ENSMUST00000169679.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532 	ENSMUST00000183326.1|Zfp532|ENSMUSG00000042439.6|zinc finger protein 532
mm10_v2_chr2_-_84650760_84650771	0.698216	Hoxc9	ENSMUST00000111691.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr1_+_66321708_66321719	0.691762	Hoxc9	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr6_-_119388671_119388739	0.667265	Hoxc9	ENSMUST00000169744.1|Adipor2|ENSMUSG00000030168.7|adiponectin receptor 2
mm10_v2_chr2_-_84650490_84650544	0.665999	Hoxc9	ENSMUST00000066177.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_-_84650676_84650687	0.663361	Hoxc9	ENSMUST00000067232.3|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chrX_-_141474034_141474091	0.630753	Hoxc9	ENSMUST00000101205.2|Col4a6|ENSMUSG00000031273.10|collagen, type IV, alpha 6
mm10_v2_chr3_+_67892189_67892226	0.625895	Hoxc9	ENSMUST00000063263.3|Iqcj|ENSMUSG00000051777.4|IQ motif containing J
mm10_v2_chr8_+_118283719_118283738	0.620147	Hoxc9	ENSMUST00000117160.1|Cdh13|ENSMUSG00000031841.12|cadherin 13
mm10_v2_chr1_+_187997821_187997834	0.559877	Hoxc9	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr1_+_187997835_187997882	0.548471	Hoxc9	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr10_-_13324250_13324318	0.524534	Hoxc9	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr8_-_120228221_120228297	0.499167	Hoxc9	ENSMUST00000183235.1|A330074K22Rik|ENSMUSG00000097960.1|RIKEN cDNA A330074K22 gene
mm10_v2_chrX_+_56609843_56609864	0.471483	Hoxc9	ENSMUST00000077741.5|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6 	ENSMUST00000114784.2|Slc9a6|ENSMUSG00000060681.8|solute carrier family 9 (sodium/hydrogen exchanger), member 6
mm10_v2_chr17_-_49564262_49564337	0.45889	Hoxc9	ENSMUST00000057610.6|Daam2|ENSMUSG00000040260.7|dishevelled associated activator of morphogenesis 2
mm10_v2_chr11_+_85353156_85353219	0.412457	Hoxc9	ENSMUST00000108061.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108062.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000108056.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000138423.1|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000074875.4|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3 	ENSMUST00000092821.3|Bcas3|ENSMUSG00000059439.9|breast carcinoma amplified sequence 3
mm10_v2_chr4_-_150003130_150003149	0.398091	Hoxc9	ENSMUST00000084117.6|H6pd|ENSMUSG00000028980.8|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm10_v2_chr10_-_13324160_13324242	0.39335	Hoxc9	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr1_-_45503282_45503282	0.382541	Hoxc9	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr19_-_10880370_10880411	0.377786	Hoxc9	ENSMUST00000133303.1|Tmem109|ENSMUSG00000034659.8|transmembrane protein 109
mm10_v2_chr5_+_67260696_67260711	0.335779	Hoxc9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr10_-_88605017_88605152	0.323015	Hoxc9	ENSMUST00000119185.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type 	ENSMUST00000121629.1|Mybpc1|ENSMUSG00000020061.11|myosin binding protein C, slow-type
mm10_v2_chr13_+_94083490_94083511	0.293433	Hoxc9	ENSMUST00000156071.1|Lhfpl2|ENSMUSG00000045312.5|lipoma HMGIC fusion partner-like 2
mm10_v2_chr4_+_107830958_107830985	0.254627	Hoxc9	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr5_-_44101668_44101745	0.232948	Hoxc9	ENSMUST00000087441.4|Prom1|ENSMUSG00000029086.9|prominin 1 	ENSMUST00000074113.6|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr11_-_80080928_80081001	0.222645	Hoxc9	ENSMUST00000103233.3|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3 	ENSMUST00000061283.8|Crlf3|ENSMUSG00000017561.10|cytokine receptor-like factor 3
mm10_v2_chr5_-_67427794_67427813	0.203299	Hoxc9	ENSMUST00000169190.1|Bend4|ENSMUSG00000092060.1|BEN domain containing 4
mm10_v2_chr12_-_15816762_15816881	0.189623	Hoxc9	ENSMUST00000020922.7|Trib2|ENSMUSG00000020601.7|tribbles homolog 2 (Drosophila)
mm10_v2_chr14_+_80000292_80000309	0.182721	Hoxc9	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr10_-_67912620_67912685	0.181351	Hoxc9	ENSMUST00000064656.7|Zfp365|ENSMUSG00000037855.9|zinc finger protein 365
mm10_v2_chr11_+_3330401_3330541	0.174949	Hoxc9	ENSMUST00000045153.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr8_+_54954728_54954820	0.172273	Hoxc9	ENSMUST00000033915.7|Gpm6a|ENSMUSG00000031517.7|glycoprotein m6a
mm10_v2_chr6_+_54269135_54269161	0.162098	Hoxc9	ENSMUST00000114401.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr4_+_137594140_137594274	0.15434	Hoxc9	ENSMUST00000105840.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000055131.6|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105839.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48 	ENSMUST00000105838.1|Usp48|ENSMUSG00000043411.9|ubiquitin specific peptidase 48
mm10_v2_chr4_-_91376433_91376477	0.120654	Hoxc9	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chrX_-_143933204_143933311	0.0923829	Hoxc9	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr4_-_109202217_109202272	0.0870993	Hoxc9	ENSMUST00000160774.1|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000030288.7|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9 	ENSMUST00000162787.2|Osbpl9|ENSMUSG00000028559.11|oxysterol binding protein-like 9
mm10_v2_chr5_+_67260565_67260692	0.0861756	Hoxc9	ENSMUST00000037918.5|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000162543.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr11_-_94242701_94242729	0.084051	Hoxc9	ENSMUST00000061469.3|Wfikkn2|ENSMUSG00000044177.4|WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2
mm10_v2_chr10_+_128411616_128411676	0.0792957	Hoxc9	ENSMUST00000096386.5|Rnf41|ENSMUSG00000025373.7|ring finger protein 41 	ENSMUST00000171342.1|Rnf41|ENSMUSG00000025373.7|ring finger protein 41
mm10_v2_chr1_+_58210397_58210457	0.0731054	Hoxc9	ENSMUST00000040442.5|Aox4|ENSMUSG00000038242.6|aldehyde oxidase 4
mm10_v2_chr3_+_66985700_66985740	0.0618133	Hoxc9	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr2_+_128967383_128967443	0.0530069	Hoxc9	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr2_+_70474923_70474923	0.0526389	Hoxc9	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr3_+_66985680_66985692	0.0379741	Hoxc9	ENSMUST00000065047.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr16_-_37384915_37384931	0.0238686	Hoxc9	ENSMUST00000114787.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114782.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000023526.2|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like 	ENSMUST00000114775.1|Stxbp5l|ENSMUSG00000022829.8|syntaxin binding protein 5-like
mm10_v2_chr9_+_53771499_53771535	0.0156093	Hoxc9	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr3_+_129199919_129199943	0.0120462	Hoxc9	ENSMUST00000029657.9|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2 	ENSMUST00000106382.4|Pitx2|ENSMUSG00000028023.10|paired-like homeodomain transcription factor 2
mm10_v2_chr9_-_7835255_7835255	0.000833621	Hoxc9	ENSMUST00000074246.6|Birc2|ENSMUSG00000057367.6|baculoviral IAP repeat-containing 2
