mm10_v2_chr14_-_48665098_48665246	6.05627	Lhx4	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr19_+_44493472_44493472	5.24408	Lhx4	ENSMUST00000041163.4|Wnt8b|ENSMUSG00000036961.4|wingless related MMTV integration site 8b
mm10_v2_chr17_-_48432723_48432741	4.91496	Lhx4	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr7_-_49636847_49636851	3.98552	Lhx4	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr16_-_22161450_22161450	3.09243	Lhx4	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr1_-_163289214_163289235	2.5296	Lhx4	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr11_+_59306920_59306935	2.51056	Lhx4	ENSMUST00000000128.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A 	ENSMUST00000108783.3|Wnt9a|ENSMUSG00000000126.5|wingless-type MMTV integration site 9A
mm10_v2_chr3_+_55782500_55782521	2.49613	Lhx4	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chr17_+_34592248_34592329	2.34798	Lhx4	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr10_+_37139558_37139558	2.21767	Lhx4	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr14_+_75455957_75455996	2.18182	Lhx4	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr10_-_37138863_37138937	2.17451	Lhx4	ENSMUST00000092584.5|Marcks|ENSMUSG00000069662.5|myristoylated alanine rich protein kinase C substrate
mm10_v2_chr4_-_97778042_97778071	2.14316	Lhx4	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr1_+_153665666_153665709	2.09932	Lhx4	ENSMUST00000111814.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8 	ENSMUST00000111810.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr4_-_58499398_58499409	2.09068	Lhx4	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr9_+_119063429_119063467	1.83258	Lhx4	ENSMUST00000141185.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000126251.1|Vill|ENSMUSG00000038775.8|villin-like 	ENSMUST00000136561.1|Vill|ENSMUSG00000038775.8|villin-like
mm10_v2_chr2_+_20737306_20737321	1.81473	Lhx4	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr1_+_153665627_153665657	1.73292	Lhx4	ENSMUST00000147482.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr2_-_166155272_166155286	1.65153	Lhx4	ENSMUST00000088086.3|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr6_+_7555053_7555096	1.64203	Lhx4	ENSMUST00000090679.2|Tac1|ENSMUSG00000061762.6|tachykinin 1 	ENSMUST00000184986.1|Tac1|ENSMUSG00000061762.6|tachykinin 1
mm10_v2_chr1_+_153665587_153665595	1.64139	Lhx4	ENSMUST00000147700.1|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr15_-_103215285_103215366	1.62891	Lhx4	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr2_-_174346712_174346712	1.59933	Lhx4	ENSMUST00000168292.1|Gm20721|ENSMUSG00000090625.1|predicted gene, 20721
mm10_v2_chr4_+_65124174_65124174	1.56413	Lhx4	ENSMUST00000084501.3|Pappa|ENSMUSG00000028370.7|pregnancy-associated plasma protein A
mm10_v2_chr8_-_61902669_61902713	1.53516	Lhx4	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr2_-_166155624_166155671	1.46094	Lhx4	ENSMUST00000109249.2|Sulf2|ENSMUSG00000006800.7|sulfatase 2
mm10_v2_chr13_-_102906046_102906111	1.39732	Lhx4	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr13_-_102905740_102905814	1.34939	Lhx4	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr2_+_61804453_61804538	1.30995	Lhx4	ENSMUST00000048934.8|Tbr1|ENSMUSG00000035033.9|T-box brain gene 1
mm10_v2_chr7_-_37773555_37773641	1.30112	Lhx4	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr15_-_42676967_42676978	1.28223	Lhx4	ENSMUST00000022921.5|Angpt1|ENSMUSG00000022309.8|angiopoietin 1
mm10_v2_chr9_+_120929216_120929251	1.26188	Lhx4	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr2_-_28916412_28916440	1.21358	Lhx4	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr11_+_58171648_58171688	1.17868	Lhx4	ENSMUST00000020820.1|Mrpl22|ENSMUSG00000020514.2|mitochondrial ribosomal protein L22
mm10_v2_chr15_-_64922290_64922315	1.13003	Lhx4	ENSMUST00000023007.5|Adcy8|ENSMUSG00000022376.7|adenylate cyclase 8
mm10_v2_chr12_-_73047179_73047179	1.11511	Lhx4	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr6_-_115037824_115037881	1.09687	Lhx4	ENSMUST00000174848.1|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 	ENSMUST00000032461.5|Tamm41|ENSMUSG00000030316.7|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)
mm10_v2_chr3_+_24333046_24333046	1.08335	Lhx4	ENSMUST00000077389.6|Gm7536|ENSMUSG00000057036.6|predicted gene 7536
mm10_v2_chr16_-_45844303_45844381	1.05997	Lhx4	ENSMUST00000036355.6|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr17_+_82539258_82539258	1.05885	Lhx4	ENSMUST00000097278.3|Gm6594|ENSMUSG00000073371.3|predicted pseudogene 6594
mm10_v2_chr16_-_45844228_45844236	1.0304	Lhx4	ENSMUST00000076333.5|Phldb2|ENSMUSG00000033149.10|pleckstrin homology-like domain, family B, member 2
mm10_v2_chr10_-_63421739_63421739	1.02131	Lhx4	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr2_-_28916668_28916668	0.999843	Lhx4	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr9_+_64281575_64281630	0.996839	Lhx4	ENSMUST00000034964.6|Tipin|ENSMUSG00000032397.6|timeless interacting protein
mm10_v2_chr19_+_38395980_38396022	0.994747	Lhx4	ENSMUST00000054098.2|Slc35g1|ENSMUSG00000044026.2|solute carrier family 35, member G1
mm10_v2_chr2_-_72986716_72986716	0.980882	Lhx4	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr18_+_34758890_34758906	0.965516	Lhx4	ENSMUST00000049281.5|Fam53c|ENSMUSG00000034300.10|family with sequence similarity 53, member C
mm10_v2_chr3_-_141982224_141982264	0.960878	Lhx4	ENSMUST00000029948.8|Bmpr1b|ENSMUSG00000052430.9|bone morphogenetic protein receptor, type 1B
mm10_v2_chr7_+_100159241_100159315	0.959945	Lhx4	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr17_+_17402672_17402771	0.952368	Lhx4	ENSMUST00000115576.2|Lix1|ENSMUSG00000047786.12|limb expression 1 homolog (chicken)
mm10_v2_chr4_+_15881255_15881272	0.950876	Lhx4	ENSMUST00000029876.1|Calb1|ENSMUSG00000028222.2|calbindin 1
mm10_v2_chrX_+_169685191_169685250	0.94071	Lhx4	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr2_-_160619971_160619971	0.933057	Lhx4	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr10_-_40302186_40302206	0.920015	Lhx4	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr5_-_3647806_3648009	0.886374	Lhx4	ENSMUST00000119783.1|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1 	ENSMUST00000007559.8|Gatad1|ENSMUSG00000007415.9|GATA zinc finger domain containing 1
mm10_v2_chr7_-_37772868_37772891	0.881821	Lhx4	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chrX_-_102157065_102157096	0.842052	Lhx4	ENSMUST00000056904.2|Ercc6l|ENSMUSG00000051220.2|excision repair cross-complementing rodent repair deficiency complementation group 6 like
mm10_v2_chr2_+_83724397_83724555	0.813028	Lhx4	ENSMUST00000028499.4|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000141725.1|Itgav|ENSMUSG00000027087.5|integrin alpha V 	ENSMUST00000111740.2|Itgav|ENSMUSG00000027087.5|integrin alpha V
mm10_v2_chr7_-_37769624_37769677	0.790259	Lhx4	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr9_+_118478344_118478451	0.788483	Lhx4	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr1_-_172027269_172027313	0.787977	Lhx4	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr2_+_163658370_163658510	0.783031	Lhx4	ENSMUST00000164399.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000064703.6|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000099105.2|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000152418.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000126182.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma 	ENSMUST00000131228.1|Pkig|ENSMUSG00000035268.8|protein kinase inhibitor, gamma
mm10_v2_chr12_+_38783503_38783527	0.760032	Lhx4	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr1_+_106171752_106171879	0.75854	Lhx4	ENSMUST00000061047.6|Phlpp1|ENSMUSG00000044340.6|PH domain and leucine rich repeat protein phosphatase 1
mm10_v2_chr1_-_89933290_89933290	0.756734	Lhx4	ENSMUST00000036954.7|Gbx2|ENSMUSG00000034486.7|gastrulation brain homeobox 2
mm10_v2_chr17_-_24073479_24073490	0.753675	Lhx4	ENSMUST00000017090.5|Kctd5|ENSMUSG00000016946.5|potassium channel tetramerisation domain containing 5
mm10_v2_chr4_-_119294520_119294604	0.742453	Lhx4	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr2_+_132847719_132847743	0.736928	Lhx4	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr14_-_96519067_96519102	0.714081	Lhx4	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr1_-_72284248_72284314	0.707896	Lhx4	ENSMUST00000097698.4|Pecr|ENSMUSG00000026189.7|peroxisomal trans-2-enoyl-CoA reductase 	ENSMUST00000027381.6|Pecr|ENSMUSG00000026189.7|peroxisomal trans-2-enoyl-CoA reductase
mm10_v2_chr9_+_108339048_108339080	0.706051	Lhx4	ENSMUST00000082429.5|Gpx1|ENSMUSG00000063856.6|glutathione peroxidase 1
mm10_v2_chr2_-_73453918_73453979	0.70213	Lhx4	ENSMUST00000102679.1|Wipf1|ENSMUSG00000075284.4|WAS/WASL interacting protein family, member 1
mm10_v2_chr17_-_26099257_26099259	0.678867	Lhx4	ENSMUST00000053575.3|Gm8186|ENSMUSG00000049124.3|predicted gene 8186
mm10_v2_chr5_+_15516489_15516489	0.677335	Lhx4	ENSMUST00000178227.1|Gm21847|ENSMUSG00000094230.1|predicted gene, 21847
mm10_v2_chr12_+_3954943_3954957	0.670401	Lhx4	ENSMUST00000020990.5|Pomc|ENSMUSG00000020660.5|pro-opiomelanocortin-alpha
mm10_v2_chr14_+_74735641_74735663	0.663538	Lhx4	ENSMUST00000177283.1|Esd|ENSMUSG00000021996.10|esterase D/formylglutathione hydrolase
mm10_v2_chr17_-_34862473_34862535	0.65358	Lhx4	ENSMUST00000025229.4|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000176203.2|Cfb|ENSMUSG00000090231.4|complement factor B 	ENSMUST00000128767.1|Cfb|ENSMUSG00000090231.4|complement factor B
mm10_v2_chr8_-_46294592_46294671	0.652758	Lhx4	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr4_-_35845204_35845204	0.649368	Lhx4	ENSMUST00000164772.1|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2 	ENSMUST00000065173.2|Lingo2|ENSMUSG00000045083.8|leucine rich repeat and Ig domain containing 2
mm10_v2_chr14_+_69347587_69347587	0.648799	Lhx4	ENSMUST00000064831.5|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4
mm10_v2_chr17_-_14694223_14694262	0.637624	Lhx4	ENSMUST00000170872.1|Thbs2|ENSMUSG00000023885.8|thrombospondin 2
mm10_v2_chr9_-_96437434_96437434	0.618799	Lhx4	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr13_-_58354862_58354862	0.618168	Lhx4	ENSMUST00000043605.5|Kif27|ENSMUSG00000060176.3|kinesin family member 27
mm10_v2_chr8_-_106573461_106573462	0.615423	Lhx4	ENSMUST00000073722.5|Gm10073|ENSMUSG00000060019.5|predicted pseudogene 10073
mm10_v2_chr12_+_59013379_59013398	0.613087	Lhx4	ENSMUST00000021379.7|Gemin2|ENSMUSG00000060121.9|gem (nuclear organelle) associated protein 2
mm10_v2_chr6_+_29859374_29859381	0.602784	Lhx4	ENSMUST00000115238.3|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr1_-_172027251_172027268	0.600956	Lhx4	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr9_+_118478182_118478212	0.597013	Lhx4	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr11_-_31671863_31671885	0.569046	Lhx4	ENSMUST00000058060.7|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr9_+_72806874_72806874	0.567111	Lhx4	ENSMUST00000055535.8|Prtg|ENSMUSG00000036030.9|protogenin homolog (Gallus gallus)
mm10_v2_chr1_-_93445642_93445686	0.560092	Lhx4	ENSMUST00000042498.7|Hdlbp|ENSMUSG00000034088.9|high density lipoprotein (HDL) binding protein
mm10_v2_chr6_+_29859662_29859685	0.554585	Lhx4	ENSMUST00000128927.2|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr8_-_21906412_21906437	0.551713	Lhx4	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr14_+_58893465_58893506	0.5475	Lhx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr2_-_33718789_33718899	0.537077	Lhx4	ENSMUST00000130532.1|9430024E24Rik|ENSMUSG00000085463.1|RIKEN cDNA 9430024E24 gene
mm10_v2_chr7_-_45830776_45830944	0.534169	Lhx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr7_-_5014645_5014697	0.53385	Lhx4	ENSMUST00000165320.1|Fiz1|ENSMUSG00000061374.7|Flt3 interacting zinc finger protein 1
mm10_v2_chr5_+_96209463_96209493	0.528376	Lhx4	ENSMUST00000117766.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chr6_+_29859686_29859710	0.527402	Lhx4	ENSMUST00000134438.1|Ahcyl2|ENSMUSG00000029772.11|S-adenosylhomocysteine hydrolase-like 2
mm10_v2_chr10_-_35711891_35711891	0.503102	Lhx4	ENSMUST00000080898.2|Amd2|ENSMUSG00000063953.2|S-adenosylmethionine decarboxylase 2
mm10_v2_chr3_-_39359128_39359160	0.499354	Lhx4	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr11_-_31671727_31671856	0.49586	Lhx4	ENSMUST00000109415.1|Bod1|ENSMUSG00000044502.10|biorientation of chromosomes in cell division 1
mm10_v2_chr15_+_25752860_25752979	0.489561	Lhx4	ENSMUST00000022882.5|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000135173.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_-_5266038_5266292	0.485095	Lhx4	ENSMUST00000115451.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000115452.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14 	ENSMUST00000131392.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr4_+_116596672_116596730	0.480413	Lhx4	ENSMUST00000051869.7|Ccdc17|ENSMUSG00000034035.12|coiled-coil domain containing 17
mm10_v2_chr11_-_89418948_89418948	0.477708	Lhx4	ENSMUST00000050983.1|4932411E22Rik|ENSMUSG00000047490.1|RIKEN cDNA 4932411E22 gene
mm10_v2_chr16_-_56024628_56024668	0.474969	Lhx4	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr14_+_26122609_26122609	0.465087	Lhx4	ENSMUST00000100810.6|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr2_-_112480817_112480817	0.461221	Lhx4	ENSMUST00000099589.2|Chrm5|ENSMUSG00000074939.2|cholinergic receptor, muscarinic 5
mm10_v2_chr10_+_102158858_102158889	0.452135	Lhx4	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr12_-_84617326_84617466	0.44627	Lhx4	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr7_+_126976338_126976400	0.427765	Lhx4	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr4_-_3938354_3938401	0.42441	Lhx4	ENSMUST00000003369.3|Plag1|ENSMUSG00000003282.3|pleiomorphic adenoma gene 1
mm10_v2_chr6_-_13871459_13871471	0.419303	Lhx4	ENSMUST00000155856.1|2610001J05Rik|ENSMUSG00000052419.6|RIKEN cDNA 2610001J05 gene
mm10_v2_chr11_+_60537978_60538074	0.417286	Lhx4	ENSMUST00000044250.3|Alkbh5|ENSMUSG00000042650.3|alkB, alkylation repair homolog 5 (E. coli)
mm10_v2_chr15_-_50889691_50889714	0.414187	Lhx4	ENSMUST00000165201.2|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000184458.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr11_-_4095344_4095445	0.410481	Lhx4	ENSMUST00000004868.5|Mtfp1|ENSMUSG00000004748.5|mitochondrial fission process 1
mm10_v2_chr8_+_34807287_34807310	0.405498	Lhx4	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr15_+_31224371_31224400	0.392693	Lhx4	ENSMUST00000044524.9|Dap|ENSMUSG00000039168.9|death-associated protein
mm10_v2_chr12_+_38783455_38783482	0.37397	Lhx4	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr7_-_38019505_38019552	0.363085	Lhx4	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr5_-_17888884_17888959	0.357173	Lhx4	ENSMUST00000169095.1|Cd36|ENSMUSG00000002944.9|CD36 antigen
mm10_v2_chr13_-_89742244_89742334	0.343359	Lhx4	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr18_-_56975333_56975376	0.334666	Lhx4	ENSMUST00000139243.2|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene 	ENSMUST00000025488.8|C330018D20Rik|ENSMUSG00000024592.9|RIKEN cDNA C330018D20 gene
mm10_v2_chr17_+_46650328_46650340	0.330328	Lhx4	ENSMUST00000043464.7|Cul7|ENSMUSG00000038545.7|cullin 7
mm10_v2_chrX_-_74246364_74246438	0.329984	Lhx4	ENSMUST00000130007.1|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chr15_+_16778101_16778101	0.322948	Lhx4	ENSMUST00000026432.6|Cdh9|ENSMUSG00000025370.6|cadherin 9
mm10_v2_chrX_-_74246534_74246556	0.31597	Lhx4	ENSMUST00000101454.2|Flna|ENSMUSG00000031328.9|filamin, alpha 	ENSMUST00000033699.6|Flna|ENSMUSG00000031328.9|filamin, alpha
mm10_v2_chrX_-_160138375_160138435	0.311778	Lhx4	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr3_+_102734496_102734530	0.308732	Lhx4	ENSMUST00000029451.5|Tspan2|ENSMUSG00000027858.7|tetraspanin 2
mm10_v2_chr11_+_6560183_6560240	0.306549	Lhx4	ENSMUST00000109722.2|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr2_-_148046896_148046991	0.300227	Lhx4	ENSMUST00000172928.1|Foxa2|ENSMUSG00000037025.5|forkhead box A2 	ENSMUST00000047315.3|Foxa2|ENSMUSG00000037025.5|forkhead box A2
mm10_v2_chr2_-_155945282_155945367	0.297109	Lhx4	ENSMUST00000040162.2|Gdf5|ENSMUSG00000038259.4|growth differentiation factor 5
mm10_v2_chrX_+_9885622_9885622	0.288908	Lhx4	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr19_+_10015016_10015055	0.281727	Lhx4	ENSMUST00000137637.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1 	ENSMUST00000149967.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr9_-_71896047_71896102	0.281641	Lhx4	ENSMUST00000184448.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr12_+_10390756_10390836	0.281613	Lhx4	ENSMUST00000020947.5|Rdh14|ENSMUSG00000020621.5|retinol dehydrogenase 14 (all-trans and 9-cis)
mm10_v2_chr1_-_185329331_185329401	0.278315	Lhx4	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr15_+_81744848_81744848	0.276307	Lhx4	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr11_+_109543694_109543754	0.275815	Lhx4	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr6_+_113333304_113333332	0.264975	Lhx4	ENSMUST00000147945.1|Ogg1|ENSMUSG00000030271.8|8-oxoguanine DNA-glycosylase 1
mm10_v2_chr5_+_96210115_96210161	0.25558	Lhx4	ENSMUST00000036437.6|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1 	ENSMUST00000121477.1|Mrpl1|ENSMUSG00000029486.7|mitochondrial ribosomal protein L1
mm10_v2_chrX_-_8252304_8252333	0.255543	Lhx4	ENSMUST00000115594.1|Ftsj1|ENSMUSG00000031171.5|FtsJ homolog 1 (E. coli)
mm10_v2_chr2_-_79456750_79456761	0.246275	Lhx4	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr3_-_67515487_67515523	0.244394	Lhx4	ENSMUST00000178314.1|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1 	ENSMUST00000054825.4|Rarres1|ENSMUSG00000049404.5|retinoic acid receptor responder (tazarotene induced) 1
mm10_v2_chr3_-_59220150_59220259	0.231162	Lhx4	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr6_+_40471352_40471526	0.222756	Lhx4	ENSMUST00000114779.2|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000031971.6|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000121360.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117411.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1 	ENSMUST00000117830.1|Ssbp1|ENSMUSG00000029911.8|single-stranded DNA binding protein 1
mm10_v2_chr4_-_45532470_45532470	0.214874	Lhx4	ENSMUST00000147448.1|Shb|ENSMUSG00000044813.9|src homology 2 domain-containing transforming protein B
mm10_v2_chr16_-_64771146_64771184	0.213685	Lhx4	ENSMUST00000076991.6|4930453N24Rik|ENSMUSG00000059920.9|RIKEN cDNA 4930453N24 gene
mm10_v2_chr19_+_46396885_46397004	0.19331	Lhx4	ENSMUST00000039922.6|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000111867.2|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila) 	ENSMUST00000120778.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr19_+_5474681_5474775	0.192145	Lhx4	ENSMUST00000165485.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000166253.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167371.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000167855.1|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2 	ENSMUST00000070118.7|Efemp2|ENSMUSG00000024909.8|epidermal growth factor-containing fibulin-like extracellular matrix protein 2
mm10_v2_chr16_-_90810365_90810429	0.188665	Lhx4	ENSMUST00000140920.1|Urb1|ENSMUSG00000039929.8|URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
mm10_v2_chrX_-_134111852_134111873	0.188485	Lhx4	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr8_-_84662841_84662859	0.187896	Lhx4	ENSMUST00000060427.4|Ier2|ENSMUSG00000053560.4|immediate early response 2
mm10_v2_chr9_+_96258697_96258711	0.182915	Lhx4	ENSMUST00000179416.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr17_-_56036546_56036647	0.179686	Lhx4	ENSMUST00000003268.9|Sh3gl1|ENSMUSG00000003200.9|SH3-domain GRB2-like 1
mm10_v2_chr13_-_97747373_97747384	0.157622	Lhx4	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chrX_-_139871637_139871677	0.151827	Lhx4	ENSMUST00000033811.7|Morc4|ENSMUSG00000031434.9|microrchidia 4 	ENSMUST00000087401.5|Morc4|ENSMUSG00000031434.9|microrchidia 4
mm10_v2_chr10_-_76110956_76110962	0.117288	Lhx4	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr9_+_100597686_100597798	0.111312	Lhx4	ENSMUST00000124487.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr16_-_16829276_16829349	0.110105	Lhx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr5_-_122821298_122821339	0.10967	Lhx4	ENSMUST00000086216.4|Anapc5|ENSMUSG00000029472.9|anaphase-promoting complex subunit 5
mm10_v2_chr2_+_153161303_153161339	0.109429	Lhx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr10_-_63927434_63927434	0.10849	Lhx4	ENSMUST00000079279.3|Gm10118|ENSMUSG00000062561.3|predicted gene 10118
mm10_v2_chr1_-_168432270_168432347	0.10498	Lhx4	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr15_-_56694525_56694554	0.104733	Lhx4	ENSMUST00000050544.7|Has2|ENSMUSG00000022367.7|hyaluronan synthase 2
mm10_v2_chr10_-_64090241_64090262	0.104525	Lhx4	ENSMUST00000133588.1|Lrrtm3|ENSMUSG00000042846.8|leucine rich repeat transmembrane neuronal 3
mm10_v2_chr5_+_34999046_34999069	0.0982617	Lhx4	ENSMUST00000114281.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr1_-_13372434_13372457	0.0952438	Lhx4	ENSMUST00000081713.4|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr3_+_66985700_66985740	0.0943205	Lhx4	ENSMUST00000046542.6|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1 	ENSMUST00000162693.1|Rsrc1|ENSMUSG00000034544.11|arginine/serine-rich coiled-coil 1
mm10_v2_chr11_+_82781108_82781224	0.0930548	Lhx4	ENSMUST00000092849.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000021039.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000080461.5|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173347.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173727.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173009.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000131537.2|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent 	ENSMUST00000173722.1|Lig3|ENSMUSG00000020697.10|ligase III, DNA, ATP-dependent
mm10_v2_chr1_+_63176818_63176919	0.0893122	Lhx4	ENSMUST00000129339.1|Eef1b2|ENSMUSG00000025967.10|eukaryotic translation elongation factor 1 beta 2
mm10_v2_chr18_+_60774675_60774686	0.0847174	Lhx4	ENSMUST00000118551.1|Rps14|ENSMUSG00000024608.4|ribosomal protein S14
mm10_v2_chr1_-_127840290_127840290	0.0839321	Lhx4	ENSMUST00000061512.2|Map3k19|ENSMUSG00000051590.2|mitogen-activated protein kinase kinase kinase 19
mm10_v2_chr6_+_38381469_38381528	0.0824418	Lhx4	ENSMUST00000162554.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26 	ENSMUST00000161751.1|Ttc26|ENSMUSG00000056832.8|tetratricopeptide repeat domain 26
mm10_v2_chr4_+_136143497_136143497	0.0788432	Lhx4	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr6_-_136941887_136941911	0.0673176	Lhx4	ENSMUST00000111891.1|Arhgdib|ENSMUSG00000030220.7|Rho, GDP dissociation inhibitor (GDI) beta
mm10_v2_chr8_+_110618577_110618638	0.0639311	Lhx4	ENSMUST00000034190.9|Vac14|ENSMUSG00000010936.10|Vac14 homolog (S. cerevisiae)
mm10_v2_chr5_+_34999070_34999086	0.0602916	Lhx4	ENSMUST00000114280.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr4_+_95557494_95557544	0.0585089	Lhx4	ENSMUST00000079223.4|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing 	ENSMUST00000177394.1|Fggy|ENSMUSG00000028573.12|FGGY carbohydrate kinase domain containing
mm10_v2_chr19_+_46397009_46397033	0.0581488	Lhx4	ENSMUST00000118440.1|Sufu|ENSMUSG00000025231.10|suppressor of fused homolog (Drosophila)
mm10_v2_chr10_+_116143881_116143903	0.0571508	Lhx4	ENSMUST00000105271.2|Ptprr|ENSMUSG00000020151.10|protein tyrosine phosphatase, receptor type, R
mm10_v2_chr10_-_62507737_62507764	0.0552303	Lhx4	ENSMUST00000020271.6|Srgn|ENSMUSG00000020077.8|serglycin
mm10_v2_chr17_+_29274078_29274129	0.035973	Lhx4	ENSMUST00000149405.2|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004
mm10_v2_chr10_+_75037066_75037100	0.0343665	Lhx4	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr15_+_34453285_34453312	0.0323112	Lhx4	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr15_-_93595877_93595909	0.0320112	Lhx4	ENSMUST00000048982.4|Prickle1|ENSMUSG00000036158.6|prickle homolog 1 (Drosophila)
mm10_v2_chr2_-_170194033_170194064	0.0256331	Lhx4	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chrX_+_134686519_134686536	0.0221868	Lhx4	ENSMUST00000124226.2|Armcx4|ENSMUSG00000049804.9|armadillo repeat containing, X-linked 4
mm10_v2_chr8_+_13869641_13869740	0.0209794	Lhx4	ENSMUST00000051870.7|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1 	ENSMUST00000128557.1|Champ1|ENSMUSG00000047710.7|chromosome alignment maintaining phosphoprotein 1
mm10_v2_chr3_+_142620596_142620627	0.0127731	Lhx4	ENSMUST00000165774.1|Gbp2|ENSMUSG00000028270.6|guanylate binding protein 2
mm10_v2_chr16_+_19028232_19028232	0.011092	Lhx4	ENSMUST00000074116.4|Gm10088|ENSMUSG00000060811.4|predicted gene 10088
mm10_v2_chr10_-_33624587_33624769	0.00382427	Lhx4	ENSMUST00000160299.1|Clvs2|ENSMUSG00000019785.7|clavesin 2 	ENSMUST00000019920.6|Clvs2|ENSMUSG00000019785.7|clavesin 2
