mm10_v2_chr3_+_55782500_55782521	2.30749	Nkx1-1_Nkx1-2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chrX_-_60893430_60893440	2.11157	Nkx1-1_Nkx1-2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr6_-_124779686_124779742	1.32775	Nkx1-1_Nkx1-2	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr6_-_23248264_23248390	1.1306	Nkx1-1_Nkx1-2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr7_-_143460989_143461050	0.738917	Nkx1-1_Nkx1-2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr5_+_140607334_140607352	0.660398	Nkx1-1_Nkx1-2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr6_+_29694204_29694250	0.65952	Nkx1-1_Nkx1-2	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
mm10_v2_chr13_-_102905740_102905814	0.62922	Nkx1-1_Nkx1-2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr14_-_8666236_8666279	0.613359	Nkx1-1_Nkx1-2	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr13_-_102906046_102906111	0.61083	Nkx1-1_Nkx1-2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr5_+_9100681_9100778	0.607194	Nkx1-1_Nkx1-2	ENSMUST00000115365.1|Tmem243|ENSMUSG00000079659.1|transmembrane protein 243, mitochondrial
mm10_v2_chr3_+_94372794_94372872	0.559155	Nkx1-1_Nkx1-2	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr9_-_100486788_100486788	0.522404	Nkx1-1_Nkx1-2	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr10_+_128337761_128337832	0.48563	Nkx1-1_Nkx1-2	ENSMUST00000005826.7|Cs|ENSMUSG00000005683.7|citrate synthase
mm10_v2_chr14_-_52104015_52104028	0.476342	Nkx1-1_Nkx1-2	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chrX_+_106015699_106015759	0.418577	Nkx1-1_Nkx1-2	ENSMUST00000033582.4|Cox7b|ENSMUSG00000031231.4|cytochrome c oxidase subunit VIIb
mm10_v2_chr5_+_138187485_138187521	0.37045	Nkx1-1_Nkx1-2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr17_-_34000257_34000333	0.369265	Nkx1-1_Nkx1-2	ENSMUST00000087189.6|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000173075.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000172760.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000172912.1|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region 	ENSMUST00000025181.10|H2-K1|ENSMUSG00000061232.9|histocompatibility 2, K1, K region
mm10_v2_chr4_-_119294520_119294604	0.364014	Nkx1-1_Nkx1-2	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr4_-_140774196_140774236	0.363015	Nkx1-1_Nkx1-2	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr9_+_66126611_66126649	0.318701	Nkx1-1_Nkx1-2	ENSMUST00000034945.5|Fam96a|ENSMUSG00000032381.5|family with sequence similarity 96, member A
mm10_v2_chr3_-_116424007_116424032	0.306554	Nkx1-1_Nkx1-2	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr3_-_116423930_116423993	0.300923	Nkx1-1_Nkx1-2	ENSMUST00000106491.2|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr10_+_88147061_88147076	0.295435	Nkx1-1_Nkx1-2	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr11_-_87108656_87108719	0.294553	Nkx1-1_Nkx1-2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chrM_+_8600_8616	0.293219	Nkx1-1_Nkx1-2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr17_-_48432723_48432741	0.273556	Nkx1-1_Nkx1-2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr19_+_5490475_5490487	0.271507	Nkx1-1_Nkx1-2	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr14_+_46760526_46760557	0.255233	Nkx1-1_Nkx1-2	ENSMUST00000067426.4|Cdkn3|ENSMUSG00000037628.9|cyclin-dependent kinase inhibitor 3
mm10_v2_chr7_+_101896340_101896431	0.240463	Nkx1-1_Nkx1-2	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr10_+_88146992_88147037	0.235731	Nkx1-1_Nkx1-2	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr5_+_138116903_138117041	0.227255	Nkx1-1_Nkx1-2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chr14_-_59365410_59365461	0.222132	Nkx1-1_Nkx1-2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr2_-_69712461_69712606	0.209117	Nkx1-1_Nkx1-2	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr11_-_21371143_21371221	0.20695	Nkx1-1_Nkx1-2	ENSMUST00000060895.5|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr12_+_84417196_84417254	0.196235	Nkx1-1_Nkx1-2	ENSMUST00000183146.1|Rnf113a2|ENSMUSG00000098134.1|ring finger protein 113A2
mm10_v2_chr1_-_172027269_172027313	0.195326	Nkx1-1_Nkx1-2	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr8_-_21906412_21906437	0.194379	Nkx1-1_Nkx1-2	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr11_-_43747963_43748015	0.18789	Nkx1-1_Nkx1-2	ENSMUST00000048578.2|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1 	ENSMUST00000109278.1|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1
mm10_v2_chr15_+_9436028_9436083	0.183042	Nkx1-1_Nkx1-2	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr11_+_87109221_87109239	0.179354	Nkx1-1_Nkx1-2	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr8_+_33599608_33599655	0.17076	Nkx1-1_Nkx1-2	ENSMUST00000009774.9|Ppp2cb|ENSMUSG00000009630.9|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm10_v2_chr7_-_27195727_27195768	0.167553	Nkx1-1_Nkx1-2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr7_+_128744870_128745020	0.166772	Nkx1-1_Nkx1-2	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr9_-_44113470_44113528	0.162205	Nkx1-1_Nkx1-2	ENSMUST00000056328.5|Rnf26|ENSMUSG00000053128.8|ring finger protein 26
mm10_v2_chr15_+_81663889_81663958	0.161123	Nkx1-1_Nkx1-2	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr11_+_43681998_43682036	0.154988	Nkx1-1_Nkx1-2	ENSMUST00000061070.5|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr7_-_38019505_38019552	0.148709	Nkx1-1_Nkx1-2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr19_-_41933276_41933319	0.146146	Nkx1-1_Nkx1-2	ENSMUST00000075280.4|Exosc1|ENSMUSG00000034321.7|exosome component 1 	ENSMUST00000112123.2|Exosc1|ENSMUSG00000034321.7|exosome component 1
mm10_v2_chr11_-_99230998_99231019	0.142352	Nkx1-1_Nkx1-2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr9_-_20959785_20959888	0.130465	Nkx1-1_Nkx1-2	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr4_-_132075250_132075292	0.118065	Nkx1-1_Nkx1-2	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr3_-_89101907_89101969	0.113884	Nkx1-1_Nkx1-2	ENSMUST00000081848.8|Fdps|ENSMUSG00000059743.8|farnesyl diphosphate synthetase
mm10_v2_chr18_+_4993795_4993819	0.113196	Nkx1-1_Nkx1-2	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr2_-_132247747_132247807	0.11191	Nkx1-1_Nkx1-2	ENSMUST00000110163.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000180286.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000028816.2|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr7_+_101896817_101896961	0.109406	Nkx1-1_Nkx1-2	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr8_+_83972951_83973028	0.100978	Nkx1-1_Nkx1-2	ENSMUST00000005606.6|Prkaca|ENSMUSG00000005469.9|protein kinase, cAMP dependent, catalytic, alpha
mm10_v2_chr12_-_40037387_40037429	0.088285	Nkx1-1_Nkx1-2	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr17_-_63863791_63863791	0.0842443	Nkx1-1_Nkx1-2	ENSMUST00000050753.3|A930002H24Rik|ENSMUSG00000045506.3|RIKEN cDNA A930002H24 gene
mm10_v2_chr7_+_51880312_51880356	0.0831827	Nkx1-1_Nkx1-2	ENSMUST00000145049.1|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chrX_-_160138375_160138435	0.0827583	Nkx1-1_Nkx1-2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr8_-_104534630_104534646	0.0802416	Nkx1-1_Nkx1-2	ENSMUST00000162466.1|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1 	ENSMUST00000034349.9|Nae1|ENSMUSG00000031878.11|NEDD8 activating enzyme E1 subunit 1
mm10_v2_chr9_-_66126559_66126603	0.0780937	Nkx1-1_Nkx1-2	ENSMUST00000137542.1|Snx1|ENSMUSG00000032382.8|sorting nexin 1
mm10_v2_chr7_+_29983948_29983964	0.0763762	Nkx1-1_Nkx1-2	ENSMUST00000148442.1|Zfp568|ENSMUSG00000074221.5|zinc finger protein 568
mm10_v2_chr6_+_68161415_68161415	0.0736644	Nkx1-1_Nkx1-2	ENSMUST00000168090.1|Igkv1-115|ENSMUSG00000091800.1|immunoglobulin kappa variable 1-115
mm10_v2_chr12_+_4769278_4769338	0.0654194	Nkx1-1_Nkx1-2	ENSMUST00000020967.4|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr15_+_75993756_75993832	0.0607529	Nkx1-1_Nkx1-2	ENSMUST00000089669.4|Mapk15|ENSMUSG00000063704.6|mitogen-activated protein kinase 15
mm10_v2_chr19_+_41933464_41933540	0.0588085	Nkx1-1_Nkx1-2	ENSMUST00000026154.7|Zdhhc16|ENSMUSG00000025157.7|zinc finger, DHHC domain containing 16
mm10_v2_chr11_+_116843278_116843278	0.0565524	Nkx1-1_Nkx1-2	ENSMUST00000106370.3|Mettl23|ENSMUSG00000090266.4|methyltransferase like 23
mm10_v2_chr1_+_190928492_190928550	0.0526501	Nkx1-1_Nkx1-2	ENSMUST00000066632.7|Angel2|ENSMUSG00000026634.10|angel homolog 2 (Drosophila) 	ENSMUST00000110899.1|Angel2|ENSMUSG00000026634.10|angel homolog 2 (Drosophila)
mm10_v2_chr15_+_41830921_41831001	0.0520633	Nkx1-1_Nkx1-2	ENSMUST00000166917.1|Oxr1|ENSMUSG00000022307.9|oxidation resistance 1
mm10_v2_chr5_-_137072254_137072277	0.0466296	Nkx1-1_Nkx1-2	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chrY_+_90785442_90785586	0.0464618	Nkx1-1_Nkx1-2	ENSMUST00000177591.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000177671.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000179077.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr5_-_143909782_143909847	0.0405108	Nkx1-1_Nkx1-2	ENSMUST00000031613.4|Aimp2|ENSMUSG00000029610.7|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 	ENSMUST00000100483.2|Aimp2|ENSMUSG00000029610.7|aminoacyl tRNA synthetase complex-interacting multifunctional protein 2
mm10_v2_chr3_-_90389884_90389927	0.0402789	Nkx1-1_Nkx1-2	ENSMUST00000029541.5|Slc27a3|ENSMUSG00000027932.8|solute carrier family 27 (fatty acid transporter), member 3
mm10_v2_chr16_+_52031549_52031570	0.0396353	Nkx1-1_Nkx1-2	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr5_+_115605642_115605696	0.0364596	Nkx1-1_Nkx1-2	ENSMUST00000094427.3|Gcn1l1|ENSMUSG00000041638.12|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
mm10_v2_chr11_+_43682038_43682060	0.0282706	Nkx1-1_Nkx1-2	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr12_+_4769375_4769451	0.0264465	Nkx1-1_Nkx1-2	ENSMUST00000178879.1|Pfn4|ENSMUSG00000020639.7|profilin family, member 4
mm10_v2_chr2_+_151494182_151494203	0.0237801	Nkx1-1_Nkx1-2	ENSMUST00000089140.6|Nsfl1c|ENSMUSG00000027455.10|NSFL1 (p97) cofactor (p47)
mm10_v2_chr7_+_24271568_24271568	0.0228584	Nkx1-1_Nkx1-2	ENSMUST00000032696.6|Zfp93|ENSMUSG00000055305.9|zinc finger protein 93
mm10_v2_chr4_+_43493345_43493430	0.0211336	Nkx1-1_Nkx1-2	ENSMUST00000030181.5|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107 	ENSMUST00000107922.2|Ccdc107|ENSMUSG00000028461.6|coiled-coil domain containing 107
mm10_v2_chr5_+_103425181_103425197	0.0138535	Nkx1-1_Nkx1-2	ENSMUST00000048957.9|Ptpn13|ENSMUSG00000034573.10|protein tyrosine phosphatase, non-receptor type 13
mm10_v2_chr7_-_100964371_100964395	0.0105854	Nkx1-1_Nkx1-2	ENSMUST00000060174.4|P2ry6|ENSMUSG00000048779.4|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm10_v2_chr10_+_116301374_116301428	0.00895662	Nkx1-1_Nkx1-2	ENSMUST00000092167.5|Ptprb|ENSMUSG00000020154.9|protein tyrosine phosphatase, receptor type, B
