mm10_v2_chr12_-_56536895_56536937	1.79672	Nkx2-9	ENSMUST00000001536.8|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr11_+_117849223_117849251	1.0429	Nkx2-9	ENSMUST00000081387.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr16_-_33380717_33380755	0.942387	Nkx2-9	ENSMUST00000180923.1|1700007L15Rik|ENSMUSG00000097318.1|RIKEN cDNA 1700007L15 gene
mm10_v2_chr10_+_88091070_88091076	0.913193	Nkx2-9	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr2_+_173022360_173022438	0.874869	Nkx2-9	ENSMUST00000173997.1|Rbm38|ENSMUSG00000027510.11|RNA binding motif protein 38
mm10_v2_chr11_+_117849286_117849340	0.863423	Nkx2-9	ENSMUST00000093906.4|Birc5|ENSMUSG00000017716.9|baculoviral IAP repeat-containing 5
mm10_v2_chr3_-_34351685_34351715	0.752118	Nkx2-9	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr8_+_95633500_95633586	0.725164	Nkx2-9	ENSMUST00000034094.9|Gins3|ENSMUSG00000031669.9|GINS complex subunit 3 (Psf3 homolog)
mm10_v2_chr13_-_71963713_71963729	0.714105	Nkx2-9	ENSMUST00000077337.8|Irx1|ENSMUSG00000060969.8|Iroquois related homeobox 1 (Drosophila)
mm10_v2_chr4_-_21685782_21685805	0.655379	Nkx2-9	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr1_-_181842334_181842401	0.635493	Nkx2-9	ENSMUST00000005003.6|Lbr|ENSMUSG00000004880.6|lamin B receptor
mm10_v2_chr11_-_100759740_100759754	0.630583	Nkx2-9	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr10_+_94198955_94199043	0.608648	Nkx2-9	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr17_+_46496753_46496809	0.58693	Nkx2-9	ENSMUST00000046497.6|Dnph1|ENSMUSG00000040658.6|2'-deoxynucleoside 5'-phosphate N-hydrolase 1
mm10_v2_chr16_-_35490873_35490891	0.584983	Nkx2-9	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chr16_+_30065333_30065351	0.580577	Nkx2-9	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr16_-_76403673_76403717	0.555197	Nkx2-9	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr2_-_129699833_129699850	0.553058	Nkx2-9	ENSMUST00000028883.5|Pdyn|ENSMUSG00000027400.5|prodynorphin
mm10_v2_chr2_+_103969528_103969567	0.542787	Nkx2-9	ENSMUST00000123437.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2 	ENSMUST00000163256.1|Lmo2|ENSMUSG00000032698.9|LIM domain only 2
mm10_v2_chr4_-_72852622_72852648	0.485376	Nkx2-9	ENSMUST00000179234.1|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1 	ENSMUST00000078617.4|Aldoart1|ENSMUSG00000059343.4|aldolase 1 A, retrogene 1
mm10_v2_chr1_+_87264345_87264370	0.471314	Nkx2-9	ENSMUST00000118687.1|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1 	ENSMUST00000027472.6|Efhd1|ENSMUSG00000026255.9|EF hand domain containing 1
mm10_v2_chr11_+_88718442_88718645	0.466152	Nkx2-9	ENSMUST00000138007.1|C030037D09Rik|ENSMUSG00000087574.1|RIKEN cDNA C030037D09 gene
mm10_v2_chrX_-_102189371_102189394	0.453623	Nkx2-9	ENSMUST00000033683.7|Rps4x|ENSMUSG00000031320.9|ribosomal protein S4, X-linked
mm10_v2_chr3_-_95411176_95411176	0.44233	Nkx2-9	ENSMUST00000177599.1|Gm5070|ENSMUSG00000096177.1|predicted gene 5070
mm10_v2_chr9_+_75775355_75775378	0.440735	Nkx2-9	ENSMUST00000012281.7|Bmp5|ENSMUSG00000032179.7|bone morphogenetic protein 5
mm10_v2_chr16_-_59555752_59555752	0.439121	Nkx2-9	ENSMUST00000179383.1|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3 	ENSMUST00000044604.8|Crybg3|ENSMUSG00000022723.9|beta-gamma crystallin domain containing 3
mm10_v2_chr11_-_22982090_22982382	0.427612	Nkx2-9	ENSMUST00000160826.1|RP23-242C19.7|ENSMUSG00000098650.1|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (B3gnt2), transcript variant 2, mRNA 	ENSMUST00000093270.5|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000071068.8|Commd1|ENSMUSG00000051355.12|COMM domain containing 1 	ENSMUST00000159081.1|Commd1|ENSMUSG00000051355.12|COMM domain containing 1
mm10_v2_chr6_-_6217023_6217125	0.413586	Nkx2-9	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr10_+_14523062_14523065	0.401601	Nkx2-9	ENSMUST00000096020.5|Gm10335|ENSMUSG00000071532.5|predicted gene 10335
mm10_v2_chrX_+_56779437_56779565	0.372204	Nkx2-9	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr8_-_46294592_46294671	0.360697	Nkx2-9	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr10_+_63061582_63061618	0.359957	Nkx2-9	ENSMUST00000020266.8|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1 	ENSMUST00000178684.1|Pbld1|ENSMUSG00000020072.8|phenazine biosynthesis-like protein domain containing 1
mm10_v2_chr5_+_30105161_30105219	0.345733	Nkx2-9	ENSMUST00000058045.4|Gareml|ENSMUSG00000044576.6|GRB2 associated, regulator of MAPK1-like
mm10_v2_chrX_-_49788204_49788243	0.342161	Nkx2-9	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr2_+_181767040_181767073	0.341336	Nkx2-9	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chrX_+_13632769_13632798	0.339603	Nkx2-9	ENSMUST00000096492.3|Gpr34|ENSMUSG00000040229.5|G protein-coupled receptor 34
mm10_v2_chr16_-_46155077_46155077	0.336528	Nkx2-9	ENSMUST00000059524.5|Gm4737|ENSMUSG00000048087.5|predicted gene 4737
mm10_v2_chr15_-_10470490_10470527	0.333702	Nkx2-9	ENSMUST00000136591.1|Dnajc21|ENSMUSG00000044224.10|DnaJ (Hsp40) homolog, subfamily C, member 21
mm10_v2_chr13_+_72632597_72632625	0.331058	Nkx2-9	ENSMUST00000172353.1|Irx2|ENSMUSG00000001504.9|Iroquois related homeobox 2 (Drosophila)
mm10_v2_chr4_+_44981389_44981461	0.328593	Nkx2-9	ENSMUST00000045078.6|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000128973.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase 	ENSMUST00000151148.1|Grhpr|ENSMUSG00000035637.8|glyoxylate reductase/hydroxypyruvate reductase
mm10_v2_chr11_+_114668524_114668626	0.31486	Nkx2-9	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr9_+_57504012_57504102	0.310114	Nkx2-9	ENSMUST00000080514.7|Rpp25|ENSMUSG00000062309.7|ribonuclease P/MRP 25 subunit
mm10_v2_chr7_-_142576492_142576538	0.309006	Nkx2-9	ENSMUST00000140716.1|H19|ENSMUSG00000000031.9|H19 fetal liver mRNA
mm10_v2_chr1_-_131097535_131097576	0.307857	Nkx2-9	ENSMUST00000016672.4|Mapkapk2|ENSMUSG00000016528.4|MAP kinase-activated protein kinase 2
mm10_v2_chr12_-_71136611_71136701	0.294839	Nkx2-9	ENSMUST00000021486.8|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9 	ENSMUST00000166120.1|Timm9|ENSMUSG00000021079.9|translocase of inner mitochondrial membrane 9
mm10_v2_chr1_+_59256906_59256907	0.291938	Nkx2-9	ENSMUST00000160662.1|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15 	ENSMUST00000114248.2|Cdk15|ENSMUSG00000026023.10|cyclin-dependent kinase 15
mm10_v2_chr7_+_4925802_4925868	0.290926	Nkx2-9	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr19_+_43752996_43753137	0.288701	Nkx2-9	ENSMUST00000026199.7|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000112047.3|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli) 	ENSMUST00000153295.1|Cutc|ENSMUSG00000025193.8|cutC copper transporter homolog (E.coli)
mm10_v2_chr1_-_128103016_128103053	0.288421	Nkx2-9	ENSMUST00000097597.2|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr8_-_70700070_70700088	0.271874	Nkx2-9	ENSMUST00000116172.1|Gm11175|ENSMUSG00000080058.1|predicted gene 11175
mm10_v2_chr16_+_70313949_70314016	0.271086	Nkx2-9	ENSMUST00000163832.1|Gbe1|ENSMUSG00000022707.10|glucan (1,4-alpha-), branching enzyme 1
mm10_v2_chr13_-_107890059_107890073	0.259472	Nkx2-9	ENSMUST00000105097.2|Zswim6|ENSMUSG00000032846.9|zinc finger SWIM-type containing 6
mm10_v2_chr11_+_87699897_87699897	0.259028	Nkx2-9	ENSMUST00000040089.4|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr2_-_152398046_152398076	0.255658	Nkx2-9	ENSMUST00000063332.8|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12 	ENSMUST00000182625.1|Sox12|ENSMUSG00000051817.8|SRY-box containing gene 12
mm10_v2_chr18_+_73859366_73859402	0.240687	Nkx2-9	ENSMUST00000120033.1|Mro|ENSMUSG00000064036.9|maestro 	ENSMUST00000179472.1|Mro|ENSMUSG00000064036.9|maestro 	ENSMUST00000119239.1|Mro|ENSMUSG00000064036.9|maestro
mm10_v2_chr6_+_122707489_122707608	0.233487	Nkx2-9	ENSMUST00000112581.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000112580.1|Nanog|ENSMUSG00000012396.6|Nanog homeobox 	ENSMUST00000012540.4|Nanog|ENSMUSG00000012396.6|Nanog homeobox
mm10_v2_chrX_+_152001845_152001908	0.231874	Nkx2-9	ENSMUST00000026289.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10 	ENSMUST00000112617.3|Hsd17b10|ENSMUSG00000025260.4|hydroxysteroid (17-beta) dehydrogenase 10
mm10_v2_chr15_+_58933774_58933836	0.230811	Nkx2-9	ENSMUST00000022980.3|Ndufb9|ENSMUSG00000022354.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9
mm10_v2_chr18_-_35662180_35662195	0.222068	Nkx2-9	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr17_-_25861456_25861510	0.21888	Nkx2-9	ENSMUST00000079461.8|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90 	ENSMUST00000176923.1|Wdr90|ENSMUSG00000073434.5|WD repeat domain 90
mm10_v2_chr1_+_74153981_74154003	0.218146	Nkx2-9	ENSMUST00000027372.7|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2 	ENSMUST00000106899.2|Cxcr2|ENSMUSG00000026180.7|chemokine (C-X-C motif) receptor 2
mm10_v2_chr12_-_55080098_55080121	0.208692	Nkx2-9	ENSMUST00000021406.5|2700097O09Rik|ENSMUSG00000062198.4|RIKEN cDNA 2700097O09 gene
mm10_v2_chr12_+_24572276_24572308	0.2086	Nkx2-9	ENSMUST00000085553.5|Grhl1|ENSMUSG00000020656.9|grainyhead-like 1 (Drosophila)
mm10_v2_chr9_-_106887000_106887094	0.199961	Nkx2-9	ENSMUST00000055843.7|Rbm15b|ENSMUSG00000045365.7|RNA binding motif protein 15B
mm10_v2_chr1_+_63176818_63176919	0.196085	Nkx2-9	ENSMUST00000129339.1|Eef1b2|ENSMUSG00000025967.10|eukaryotic translation elongation factor 1 beta 2
mm10_v2_chr17_+_34263209_34263256	0.194077	Nkx2-9	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chrX_+_135993820_135993820	0.19033	Nkx2-9	ENSMUST00000058119.7|Arxes2|ENSMUSG00000048040.7|adipocyte-related X-chromosome expressed sequence 2
mm10_v2_chr9_-_56161051_56161075	0.189933	Nkx2-9	ENSMUST00000034876.8|Tspan3|ENSMUSG00000032324.10|tetraspanin 3
mm10_v2_chr7_+_30280094_30280188	0.189631	Nkx2-9	ENSMUST00000108187.1|Thap8|ENSMUSG00000013928.6|THAP domain containing 8 	ENSMUST00000014072.5|Thap8|ENSMUSG00000013928.6|THAP domain containing 8
mm10_v2_chr14_+_75455957_75455996	0.189484	Nkx2-9	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr4_+_8690399_8690470	0.185459	Nkx2-9	ENSMUST00000127476.1|Chd7|ENSMUSG00000041235.5|chromodomain helicase DNA binding protein 7
mm10_v2_chr15_-_98918131_98918231	0.177194	Nkx2-9	ENSMUST00000023736.8|Lmbr1l|ENSMUSG00000022999.8|limb region 1 like
mm10_v2_chrX_+_7899350_7899362	0.176831	Nkx2-9	ENSMUST00000033498.3|Timm17b|ENSMUSG00000031158.5|translocase of inner mitochondrial membrane 17b
mm10_v2_chrM_+_7759_7927	0.176286	Nkx2-9	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr14_-_46831984_46832057	0.170396	Nkx2-9	ENSMUST00000181311.1|Gm10101|ENSMUSG00000061510.3|predicted gene 10101 	ENSMUST00000074862.2|Gm10101|ENSMUSG00000061510.3|predicted gene 10101
mm10_v2_chr11_+_108920342_108920358	0.165305	Nkx2-9	ENSMUST00000052915.7|Axin2|ENSMUSG00000000142.9|axin2
mm10_v2_chr3_-_37125943_37125969	0.164026	Nkx2-9	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr3_+_138277489_138277495	0.161169	Nkx2-9	ENSMUST00000004232.9|Adh1|ENSMUSG00000074207.4|alcohol dehydrogenase 1 (class I)
mm10_v2_chr8_-_79399513_79399532	0.157536	Nkx2-9	ENSMUST00000066091.7|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000109885.1|Smad1|ENSMUSG00000031681.8|SMAD family member 1 	ENSMUST00000066081.3|Smad1|ENSMUSG00000031681.8|SMAD family member 1
mm10_v2_chr11_-_109363654_109363654	0.155189	Nkx2-9	ENSMUST00000070956.3|Gm11696|ENSMUSG00000056687.3|predicted gene 11696
mm10_v2_chr3_+_122419772_122419787	0.147633	Nkx2-9	ENSMUST00000029766.4|Bcar3|ENSMUSG00000028121.4|breast cancer anti-estrogen resistance 3
mm10_v2_chr3_-_153912966_153912990	0.146435	Nkx2-9	ENSMUST00000089950.4|Rabggtb|ENSMUSG00000038975.8|RAB geranylgeranyl transferase, b subunit
mm10_v2_chr16_+_32271468_32271523	0.144283	Nkx2-9	ENSMUST00000093183.3|Smco1|ENSMUSG00000046345.4|single-pass membrane protein with coiled-coil domains 1
mm10_v2_chr2_+_140152043_140152043	0.139449	Nkx2-9	ENSMUST00000104994.2|Gm17374|ENSMUSG00000078197.2|predicted gene, 17374
mm10_v2_chr5_-_45639501_45639525	0.138182	Nkx2-9	ENSMUST00000016023.7|Fam184b|ENSMUSG00000015879.7|family with sequence similarity 184, member B
mm10_v2_chr4_-_41275091_41275144	0.138116	Nkx2-9	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr6_+_31574967_31574991	0.137337	Nkx2-9	ENSMUST00000150540.1|Gm6117|ENSMUSG00000086732.1|predicted gene 6117
mm10_v2_chr14_+_53665912_53665946	0.133625	Nkx2-9	ENSMUST00000181768.1|Trav3-3|ENSMUSG00000094828.4|T cell receptor alpha variable 3-3
mm10_v2_chr7_-_102018139_102018206	0.129545	Nkx2-9	ENSMUST00000094134.3|Il18bp|ENSMUSG00000070427.3|interleukin 18 binding protein
mm10_v2_chr2_+_80638798_80638834	0.12897	Nkx2-9	ENSMUST00000028382.6|Nup35|ENSMUSG00000026999.8|nucleoporin 35 	ENSMUST00000124377.1|Nup35|ENSMUSG00000026999.8|nucleoporin 35
mm10_v2_chrX_-_95658392_95658412	0.124987	Nkx2-9	ENSMUST00000120620.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chrX_+_7878298_7878314	0.122836	Nkx2-9	ENSMUST00000033495.8|Pim2|ENSMUSG00000031155.8|proviral integration site 2
mm10_v2_chr6_-_142507805_142507962	0.118166	Nkx2-9	ENSMUST00000134191.1|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B 	ENSMUST00000032373.5|Ldhb|ENSMUSG00000030246.5|lactate dehydrogenase B
mm10_v2_chrX_+_42149534_42149683	0.114278	Nkx2-9	ENSMUST00000127618.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chr2_+_80315461_80315511	0.105182	Nkx2-9	ENSMUST00000028392.7|Dnajc10|ENSMUSG00000027006.7|DnaJ (Hsp40) homolog, subfamily C, member 10
mm10_v2_chr4_+_108834601_108834617	0.103119	Nkx2-9	ENSMUST00000030296.8|Txndc12|ENSMUSG00000028567.8|thioredoxin domain containing 12 (endoplasmic reticulum)
mm10_v2_chr7_-_126475082_126475130	0.103056	Nkx2-9	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr1_+_9545397_9545479	0.100151	Nkx2-9	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr5_-_24445254_24445287	0.0918285	Nkx2-9	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr2_-_25575224_25575224	0.0913059	Nkx2-9	ENSMUST00000039156.6|Phpt1|ENSMUSG00000036504.6|phosphohistidine phosphatase 1
mm10_v2_chr2_-_6130117_6130211	0.0890585	Nkx2-9	ENSMUST00000126551.1|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000054254.5|Proser2|ENSMUSG00000045319.7|proline and serine rich 2 	ENSMUST00000114942.2|Proser2|ENSMUSG00000045319.7|proline and serine rich 2
mm10_v2_chr10_+_68723723_68723760	0.0869807	Nkx2-9	ENSMUST00000080995.6|Tmem26|ENSMUSG00000060044.7|transmembrane protein 26
mm10_v2_chr2_+_20737306_20737321	0.0863853	Nkx2-9	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr11_+_72607221_72607307	0.081586	Nkx2-9	ENSMUST00000021148.6|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1 	ENSMUST00000138247.1|Ube2g1|ENSMUSG00000020794.7|ubiquitin-conjugating enzyme E2G 1
mm10_v2_chrX_-_95658379_95658390	0.0781983	Nkx2-9	ENSMUST00000119640.1|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chr5_+_67260696_67260711	0.0776253	Nkx2-9	ENSMUST00000161233.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33 	ENSMUST00000160352.1|Tmem33|ENSMUSG00000037720.10|transmembrane protein 33
mm10_v2_chr5_+_147430407_147430545	0.0773566	Nkx2-9	ENSMUST00000176600.1|Pan3|ENSMUSG00000029647.9|PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr9_+_74861888_74861921	0.0727624	Nkx2-9	ENSMUST00000056006.9|Onecut1|ENSMUSG00000043013.9|one cut domain, family member 1
mm10_v2_chr3_+_37420273_37420335	0.0669421	Nkx2-9	ENSMUST00000029277.8|Spata5|ENSMUSG00000027722.8|spermatogenesis associated 5
mm10_v2_chr11_+_113684412_113684480	0.064352	Nkx2-9	ENSMUST00000042227.8|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed 	ENSMUST00000123466.1|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed 	ENSMUST00000106621.3|D11Wsu47e|ENSMUSG00000041623.11|DNA segment, Chr 11, Wayne State University 47, expressed
mm10_v2_chrX_-_95658416_95658509	0.0631698	Nkx2-9	ENSMUST00000044382.6|Zc4h2|ENSMUSG00000035062.7|zinc finger, C4H2 domain containing
mm10_v2_chrX_+_42149288_42149412	0.0554704	Nkx2-9	ENSMUST00000115073.2|Stag2|ENSMUSG00000025862.8|stromal antigen 2 	ENSMUST00000115072.1|Stag2|ENSMUSG00000025862.8|stromal antigen 2
mm10_v2_chrX_-_7899220_7899271	0.0550943	Nkx2-9	ENSMUST00000033497.2|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr8_+_105701624_105701693	0.050111	Nkx2-9	ENSMUST00000093195.6|Pard6a|ENSMUSG00000005699.9|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm10_v2_chr7_-_19665005_19665030	0.0482831	Nkx2-9	ENSMUST00000055242.9|Clptm1|ENSMUSG00000002981.9|cleft lip and palate associated transmembrane protein 1
mm10_v2_chrX_-_7899196_7899206	0.0460781	Nkx2-9	ENSMUST00000115654.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr10_+_82378593_82378593	0.0422101	Nkx2-9	ENSMUST00000165906.1|Gm4924|ENSMUSG00000073427.3|predicted gene 4924
mm10_v2_chr13_+_75839868_75839881	0.0362153	Nkx2-9	ENSMUST00000022082.7|Glrx|ENSMUSG00000021591.7|glutaredoxin
mm10_v2_chr7_-_101921186_101921230	0.0359378	Nkx2-9	ENSMUST00000106965.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106968.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51 	ENSMUST00000106967.1|Lrrc51|ENSMUSG00000064307.6|leucine rich repeat containing 51
mm10_v2_chr17_+_34644764_34644797	0.0332133	Nkx2-9	ENSMUST00000036720.8|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr17_-_36058371_36058371	0.0298264	Nkx2-9	ENSMUST00000113742.2|Gm11127|ENSMUSG00000079492.2|predicted gene 11127
mm10_v2_chr2_-_165283599_165283620	0.0267331	Nkx2-9	ENSMUST00000155289.1|Slc35c2|ENSMUSG00000017664.10|solute carrier family 35, member C2
mm10_v2_chr7_+_75610038_75610080	0.0151469	Nkx2-9	ENSMUST00000125771.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr7_-_126676357_126676383	0.0112324	Nkx2-9	ENSMUST00000106371.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000106372.3|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1 	ENSMUST00000155419.1|Sult1a1|ENSMUSG00000030711.9|sulfotransferase family 1A, phenol-preferring, member 1
mm10_v2_chr1_-_63176653_63176822	0.0110006	Nkx2-9	ENSMUST00000027111.8|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1 	ENSMUST00000168099.2|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1
mm10_v2_chr16_-_92466081_92466187	0.00697377	Nkx2-9	ENSMUST00000060005.8|Rcan1|ENSMUSG00000022951.9|regulator of calcineurin 1
mm10_v2_chr6_-_87851011_87851060	0.00678843	Nkx2-9	ENSMUST00000113617.1|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein
mm10_v2_chr9_-_54647199_54647346	0.004189	Nkx2-9	ENSMUST00000128163.1|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr6_+_66896480_66896549	0.00362352	Nkx2-9	ENSMUST00000114222.1|Gng12|ENSMUSG00000036402.7|guanine nucleotide binding protein (G protein), gamma 12
