mm10_v2_chr4_+_48045144_48045160	2.81112	Rara	ENSMUST00000030025.3|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr4_-_46991842_46991916	2.66864	Rara	ENSMUST00000107749.2|Gabbr2|ENSMUSG00000039809.9|gamma-aminobutyric acid (GABA) B receptor, 2
mm10_v2_chr12_+_87026564_87026616	1.76528	Rara	ENSMUST00000110187.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c 	ENSMUST00000156162.1|Tmem63c|ENSMUSG00000034145.8|transmembrane protein 63c
mm10_v2_chr4_-_141599835_141600032	1.56117	Rara	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr17_-_56133817_56133854	1.48094	Rara	ENSMUST00000167545.1|Sema6b|ENSMUSG00000001227.5|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
mm10_v2_chr6_+_114131229_114131246	1.39258	Rara	ENSMUST00000032451.7|Slc6a11|ENSMUSG00000030307.7|solute carrier family 6 (neurotransmitter transporter, GABA), member 11
mm10_v2_chr3_-_54915867_54915887	1.2772	Rara	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr14_-_30353468_30353535	1.11128	Rara	ENSMUST00000112249.1|Cacna1d|ENSMUSG00000015968.10|calcium channel, voltage-dependent, L type, alpha 1D subunit
mm10_v2_chrX_-_59567348_59567472	1.07594	Rara	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr4_+_32238950_32238964	0.979747	Rara	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr14_-_16575456_16575501	0.968757	Rara	ENSMUST00000063750.6|Rarb|ENSMUSG00000017491.8|retinoic acid receptor, beta
mm10_v2_chr5_+_135806859_135806902	0.941835	Rara	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr4_+_150853919_150854050	0.765798	Rara	ENSMUST00000073600.2|Errfi1|ENSMUSG00000028967.4|ERBB receptor feedback inhibitor 1
mm10_v2_chr6_+_30723541_30723552	0.740926	Rara	ENSMUST00000115127.1|Mest|ENSMUSG00000051855.9|mesoderm specific transcript
mm10_v2_chr14_+_76488436_76488541	0.713634	Rara	ENSMUST00000101618.2|Tsc22d1|ENSMUSG00000022010.13|TSC22 domain family, member 1
mm10_v2_chr10_+_4611971_4612021	0.705667	Rara	ENSMUST00000105590.1|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha) 	ENSMUST00000067086.7|Esr1|ENSMUSG00000019768.10|estrogen receptor 1 (alpha)
mm10_v2_chr2_-_34754364_34754561	0.702813	Rara	ENSMUST00000142436.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000113099.3|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1 	ENSMUST00000028224.8|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr6_+_115601907_115601940	0.701684	Rara	ENSMUST00000000449.7|Mkrn2|ENSMUSG00000000439.8|makorin, ring finger protein, 2
mm10_v2_chr2_+_120977017_120977107	0.663533	Rara	ENSMUST00000067582.7|Tmem62|ENSMUSG00000054484.8|transmembrane protein 62
mm10_v2_chr3_-_36475688_36475843	0.614845	Rara	ENSMUST00000029266.8|Anxa5|ENSMUSG00000027712.8|annexin A5
mm10_v2_chr2_+_169633517_169633676	0.609669	Rara	ENSMUST00000109157.1|Tshz2|ENSMUSG00000047907.10|teashirt zinc finger family member 2
mm10_v2_chr10_+_21993890_21993955	0.570746	Rara	ENSMUST00000092673.4|Sgk1|ENSMUSG00000019970.9|serum/glucocorticoid regulated kinase 1
mm10_v2_chr10_-_89257790_89257831	0.567186	Rara	ENSMUST00000045601.7|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr4_-_128609981_128610098	0.564684	Rara	ENSMUST00000141040.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000147876.1|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20 	ENSMUST00000097877.2|Zscan20|ENSMUSG00000061894.9|zinc finger and SCAN domains 20
mm10_v2_chr11_+_98960412_98960485	0.555282	Rara	ENSMUST00000107473.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr14_+_20674311_20674371	0.543288	Rara	ENSMUST00000048657.8|Sec24c|ENSMUSG00000039367.9|Sec24 related gene family, member C (S. cerevisiae)
mm10_v2_chr7_-_141010759_141010772	0.531165	Rara	ENSMUST00000026565.6|Ifitm3|ENSMUSG00000025492.6|interferon induced transmembrane protein 3
mm10_v2_chr7_-_44670820_44670862	0.490763	Rara	ENSMUST00000048102.7|Myh14|ENSMUSG00000030739.11|myosin, heavy polypeptide 14
mm10_v2_chr14_-_74947865_74947883	0.484679	Rara	ENSMUST00000088970.5|Lrch1|ENSMUSG00000068015.6|leucine-rich repeats and calponin homology (CH) domain containing 1
mm10_v2_chr10_+_79910856_79910856	0.469683	Rara	ENSMUST00000181321.1|Gm26602|ENSMUSG00000097854.1|predicted gene, 26602
mm10_v2_chr9_-_43105718_43105793	0.458892	Rara	ENSMUST00000165665.1|Arhgef12|ENSMUSG00000059495.7|Rho guanine nucleotide exchange factor (GEF) 12
mm10_v2_chr15_+_82256023_82256130	0.413109	Rara	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr6_-_54972603_54972626	0.371952	Rara	ENSMUST00000060655.8|Nod1|ENSMUSG00000038058.8|nucleotide-binding oligomerization domain containing 1
mm10_v2_chr2_+_181365384_181365414	0.371431	Rara	ENSMUST00000108807.2|Zgpat|ENSMUSG00000027582.10|zinc finger, CCCH-type with G patch domain
mm10_v2_chr7_-_141429351_141429429	0.370171	Rara	ENSMUST00000164387.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000137488.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1 	ENSMUST00000084436.3|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr12_-_108893197_108893215	0.346136	Rara	ENSMUST00000161154.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase 	ENSMUST00000161410.1|Wars|ENSMUSG00000021266.10|tryptophanyl-tRNA synthetase
mm10_v2_chr4_+_32238713_32238804	0.333509	Rara	ENSMUST00000108180.2|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr8_+_69659263_69659263	0.329721	Rara	ENSMUST00000169125.1|Zfp964|ENSMUSG00000091764.1|zinc finger protein 964
mm10_v2_chr8_-_94876269_94876321	0.328171	Rara	ENSMUST00000046461.7|Dok4|ENSMUSG00000040631.7|docking protein 4
mm10_v2_chr8_-_119778380_119778431	0.30881	Rara	ENSMUST00000049156.5|Tldc1|ENSMUSG00000034105.8|TBC/LysM associated domain containing 1
mm10_v2_chr7_-_141429433_141429491	0.257305	Rara	ENSMUST00000124444.1|Cend1|ENSMUSG00000060240.6|cell cycle exit and neuronal differentiation 1
mm10_v2_chr1_-_36369173_36369186	0.230901	Rara	ENSMUST00000010597.3|Kansl3|ENSMUSG00000010453.6|KAT8 regulatory NSL complex subunit 3
mm10_v2_chr2_+_26319741_26319773	0.229724	Rara	ENSMUST00000066889.6|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr11_+_4986824_4986894	0.213717	Rara	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr3_+_79884496_79884571	0.200202	Rara	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr8_+_11556061_11556099	0.198498	Rara	ENSMUST00000054399.4|Ing1|ENSMUSG00000045969.7|inhibitor of growth family, member 1
mm10_v2_chr9_+_54586450_54586512	0.180458	Rara	ENSMUST00000167866.1|Idh3a|ENSMUSG00000032279.10|isocitrate dehydrogenase 3 (NAD+) alpha
mm10_v2_chr10_+_19951055_19951055	0.160844	Rara	ENSMUST00000152533.1|Map3k5|ENSMUSG00000071369.4|mitogen-activated protein kinase kinase kinase 5
mm10_v2_chr7_+_120635176_120635251	0.141056	Rara	ENSMUST00000033176.5|Uqcrc2|ENSMUSG00000030884.5|ubiquinol cytochrome c reductase core protein 2
mm10_v2_chr3_+_79884576_79884597	0.139809	Rara	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr9_-_109074049_109074140	0.13708	Rara	ENSMUST00000161521.1|Atrip|ENSMUSG00000025646.2|ATR interacting protein 	ENSMUST00000045011.2|Atrip|ENSMUSG00000025646.2|ATR interacting protein
mm10_v2_chr11_-_97700327_97700497	0.0880133	Rara	ENSMUST00000018681.7|Pcgf2|ENSMUSG00000018537.10|polycomb group ring finger 2
mm10_v2_chr8_+_106150359_106150417	0.0794626	Rara	ENSMUST00000034377.6|Pla2g15|ENSMUSG00000031903.6|phospholipase A2, group XV
mm10_v2_chr1_-_163403627_163403679	0.0742865	Rara	ENSMUST00000045138.4|Gorab|ENSMUSG00000040124.4|golgin, RAB6-interacting
mm10_v2_chr11_+_94629741_94629834	0.0561142	Rara	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr2_-_91070283_91070417	0.05608	Rara	ENSMUST00000111436.2|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000073575.5|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr2_-_91070180_91070249	0.0250872	Rara	ENSMUST00000153367.1|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13 	ENSMUST00000079976.3|Slc39a13|ENSMUSG00000002105.9|solute carrier family 39 (metal ion transporter), member 13
mm10_v2_chr17_-_32388885_32389116	0.0142938	Rara	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr6_+_91157373_91157397	0.012372	Rara	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chrX_+_74254736_74254752	0.0112342	Rara	ENSMUST00000096424.4|Emd|ENSMUSG00000001964.8|emerin
mm10_v2_chr1_+_134037490_134037530	0.00362777	Rara	ENSMUST00000162779.1|Fmod|ENSMUSG00000041559.7|fibromodulin
mm10_v2_chr5_-_105239533_105239533	0.00191212	Rara	ENSMUST00000065588.6|Gbp10|ENSMUSG00000054588.8|guanylate-binding protein 10
mm10_v2_chr3_-_88058446_88058535	0.00174877	Rara	ENSMUST00000029708.6|Apoa1bp|ENSMUSG00000028070.6|apolipoprotein A-I binding protein
