mm10_v2_chrX_-_143933089_143933142	6.80248	Sox2	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr10_+_80300997_80301050	6.06416	Sox2	ENSMUST00000140828.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2 	ENSMUST00000138909.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr10_-_29144194_29144194	4.23353	Sox2	ENSMUST00000070359.2|Gm9996|ENSMUSG00000056316.2|predicted gene 9996
mm10_v2_chr1_-_64122256_64122321	3.81249	Sox2	ENSMUST00000135075.1|Klf7|ENSMUSG00000025959.7|Kruppel-like factor 7 (ubiquitous)
mm10_v2_chr14_+_61138445_61138495	3.77777	Sox2	ENSMUST00000089394.3|Sacs|ENSMUSG00000048279.11|sacsin 	ENSMUST00000119509.1|Sacs|ENSMUSG00000048279.11|sacsin
mm10_v2_chr19_-_4334001_4334031	3.72314	Sox2	ENSMUST00000176653.1|Kdm2a|ENSMUSG00000054611.10|lysine (K)-specific demethylase 2A
mm10_v2_chr2_+_4559742_4559756	3.55688	Sox2	ENSMUST00000176828.1|Frmd4a|ENSMUSG00000026657.10|FERM domain containing 4A
mm10_v2_chr5_-_112228633_112228680	3.53524	Sox2	ENSMUST00000182699.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000182258.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding) 	ENSMUST00000183036.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr1_+_66322102_66322119	3.53391	Sox2	ENSMUST00000123647.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr2_-_25983056_25983154	3.42098	Sox2	ENSMUST00000127823.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000134882.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr11_+_3649759_3649759	3.37405	Sox2	ENSMUST00000140242.1|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr7_-_74013676_74013699	3.22308	Sox2	ENSMUST00000026896.4|St8sia2|ENSMUSG00000025789.4|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2
mm10_v2_chr14_+_25607797_25607838	3.16833	Sox2	ENSMUST00000160229.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr7_+_112679327_112679373	3.08604	Sox2	ENSMUST00000106638.2|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr10_+_29143996_29144126	3.01103	Sox2	ENSMUST00000092629.2|Soga3|ENSMUSG00000038916.6|SOGA family member 3
mm10_v2_chr13_-_54687644_54687688	3.00594	Sox2	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr4_+_54945038_54945082	2.82322	Sox2	ENSMUST00000133895.1|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr2_-_6721890_6721928	2.79097	Sox2	ENSMUST00000114927.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr2_-_6722187_6722236	2.75333	Sox2	ENSMUST00000182657.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_105415738_105415849	2.72655	Sox2	ENSMUST00000112707.1|Lrrc8b|ENSMUSG00000070639.4|leucine rich repeat containing 8 family, member B
mm10_v2_chr4_-_148130678_148130706	2.69203	Sox2	ENSMUST00000030862.4|Draxin|ENSMUSG00000029005.4|dorsal inhibitory axon guidance protein
mm10_v2_chr2_+_155382186_155382274	2.68196	Sox2	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr18_+_37484955_37485028	2.62595	Sox2	ENSMUST00000053856.4|Pcdhb17|ENSMUSG00000046387.4|protocadherin beta 17
mm10_v2_chr1_+_136131382_136131404	2.59203	Sox2	ENSMUST00000075164.4|Kif21b|ENSMUSG00000041642.12|kinesin family member 21B
mm10_v2_chr3_-_108402589_108402589	2.5882	Sox2	ENSMUST00000147565.1|Celsr2|ENSMUSG00000068740.7|cadherin, EGF LAG seven-pass G-type receptor 2 (flamingo homolog, Drosophila)
mm10_v2_chr5_-_112228900_112228929	2.49667	Sox2	ENSMUST00000182509.1|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr13_+_43615950_43615991	2.4688	Sox2	ENSMUST00000161817.1|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr4_-_32923455_32923530	2.44219	Sox2	ENSMUST00000035719.4|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6 	ENSMUST00000084749.1|Ankrd6|ENSMUSG00000040183.7|ankyrin repeat domain 6
mm10_v2_chr5_+_66968559_66968577	2.43596	Sox2	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr2_+_68861564_68861586	2.42539	Sox2	ENSMUST00000176018.1|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr18_-_43393346_43393381	2.3937	Sox2	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr10_-_122047293_122047322	2.38723	Sox2	ENSMUST00000020322.5|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1 	ENSMUST00000081688.6|Srgap1|ENSMUSG00000020121.9|SLIT-ROBO Rho GTPase activating protein 1
mm10_v2_chr16_-_34513944_34514056	2.38395	Sox2	ENSMUST00000151491.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114960.2|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr12_+_21111778_21111954	2.37485	Sox2	ENSMUST00000050990.9|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr7_-_115824699_115824752	2.36897	Sox2	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr4_-_116405986_116406120	2.34954	Sox2	ENSMUST00000123072.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2 	ENSMUST00000144281.1|Mast2|ENSMUSG00000003810.6|microtubule associated serine/threonine kinase 2
mm10_v2_chr4_+_116221590_116221618	2.34684	Sox2	ENSMUST00000147292.1|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr10_-_83533383_83533406	2.32855	Sox2	ENSMUST00000146640.1|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr1_+_87404916_87404964	2.31989	Sox2	ENSMUST00000173152.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2 	ENSMUST00000173663.1|Gigyf2|ENSMUSG00000048000.9|GRB10 interacting GYF protein 2
mm10_v2_chr9_+_108826320_108826320	2.31428	Sox2	ENSMUST00000024238.5|Celsr3|ENSMUSG00000023473.6|cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
mm10_v2_chr5_+_3928033_3928178	2.31352	Sox2	ENSMUST00000143365.1|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr14_+_31019159_31019178	2.30243	Sox2	ENSMUST00000112094.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1 	ENSMUST00000144009.1|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr10_+_69706326_69706382	2.2912	Sox2	ENSMUST00000182992.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr7_-_37772868_37772891	2.28564	Sox2	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr1_-_93101825_93101849	2.27412	Sox2	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr6_-_38875965_38875986	2.26871	Sox2	ENSMUST00000160360.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr2_-_27475600_27475611	2.24066	Sox2	ENSMUST00000147736.1|Brd3|ENSMUSG00000026918.10|bromodomain containing 3
mm10_v2_chrX_+_143518671_143518703	2.22899	Sox2	ENSMUST00000134402.1|Pak3|ENSMUSG00000031284.10|p21 protein (Cdc42/Rac)-activated kinase 3
mm10_v2_chr11_-_76577701_76577727	2.20047	Sox2	ENSMUST00000176179.1|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr1_+_135584773_135584773	2.17391	Sox2	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr9_-_75597643_75597656	2.16632	Sox2	ENSMUST00000164100.1|Tmod2|ENSMUSG00000032186.8|tropomodulin 2
mm10_v2_chr3_-_84040151_84040171	2.1655	Sox2	ENSMUST00000052342.7|D930015E06Rik|ENSMUSG00000033767.9|RIKEN cDNA D930015E06 gene
mm10_v2_chr1_+_158362330_158362411	2.13493	Sox2	ENSMUST00000170718.1|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr6_+_54681687_54681783	2.10256	Sox2	ENSMUST00000046276.6|2410066E13Rik|ENSMUSG00000038065.7|RIKEN cDNA 2410066E13 gene
mm10_v2_chr16_-_34514084_34514128	2.07795	Sox2	ENSMUST00000089655.5|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr18_+_37489465_37489465	2.06044	Sox2	ENSMUST00000055949.2|Pcdhb18|ENSMUSG00000048347.4|protocadherin beta 18
mm10_v2_chr2_-_146511899_146511979	2.02508	Sox2	ENSMUST00000131824.1|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr2_-_130839683_130839696	2.02095	Sox2	ENSMUST00000119422.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr14_-_79771305_79771318	2.00963	Sox2	ENSMUST00000039568.5|Pcdh8|ENSMUSG00000036422.5|protocadherin 8
mm10_v2_chr4_-_82705735_82705754	2.00052	Sox2	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr3_-_84270782_84270794	1.99036	Sox2	ENSMUST00000054990.4|Trim2|ENSMUSG00000027993.10|tripartite motif-containing 2
mm10_v2_chrX_+_38189829_38189842	1.98624	Sox2	ENSMUST00000131124.1|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chrX_+_13071470_13071499	1.96614	Sox2	ENSMUST00000169594.2|Usp9x|ENSMUSG00000031010.11|ubiquitin specific peptidase 9, X chromosome
mm10_v2_chr3_+_9403049_9403092	1.96039	Sox2	ENSMUST00000180874.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene 	ENSMUST00000181331.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene 	ENSMUST00000181930.1|C030034L19Rik|ENSMUSG00000097365.1|RIKEN cDNA C030034L19 gene
mm10_v2_chr1_+_66321708_66321719	1.95738	Sox2	ENSMUST00000114013.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chrX_-_12128350_12128367	1.9332	Sox2	ENSMUST00000123004.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr11_+_67586675_67586720	1.8937	Sox2	ENSMUST00000108680.1|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr12_+_76072016_76072079	1.87587	Sox2	ENSMUST00000131480.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr9_+_102718424_102718490	1.87016	Sox2	ENSMUST00000156485.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000145937.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2 	ENSMUST00000134483.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr10_+_67096456_67096534	1.85693	Sox2	ENSMUST00000174317.1|Jmjd1c|ENSMUSG00000037876.10|jumonji domain containing 1C
mm10_v2_chr11_+_104231573_104231584	1.8551	Sox2	ENSMUST00000132977.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000132245.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000100347.4|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr4_-_132049058_132049156	1.84242	Sox2	ENSMUST00000105981.2|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000084253.3|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000141291.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr4_+_136284658_136284686	1.83934	Sox2	ENSMUST00000144217.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr17_-_25433263_25433307	1.83523	Sox2	ENSMUST00000159623.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chrX_-_105929333_105929382	1.82892	Sox2	ENSMUST00000134507.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000137453.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000150914.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr15_-_8710409_8710498	1.81194	Sox2	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr3_-_127499095_127499137	1.78517	Sox2	ENSMUST00000182594.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr7_-_105787544_105787555	1.76198	Sox2	ENSMUST00000078482.5|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila) 	ENSMUST00000154659.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chrX_-_12128386_12128412	1.7601	Sox2	ENSMUST00000145872.1|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chrX_-_143933204_143933311	1.75902	Sox2	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr11_+_104231465_104231507	1.74984	Sox2	ENSMUST00000145227.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr10_+_80299084_80299126	1.74926	Sox2	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr14_+_31019183_31019214	1.73182	Sox2	ENSMUST00000052239.5|Pbrm1|ENSMUSG00000042323.10|polybromo 1
mm10_v2_chr4_+_62965560_62965617	1.72017	Sox2	ENSMUST00000030043.6|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000107415.1|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618 	ENSMUST00000064814.5|Zfp618|ENSMUSG00000028358.9|zinc finger protein 618
mm10_v2_chr2_+_27676440_27676454	1.70473	Sox2	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr13_-_8858762_8858829	1.69513	Sox2	ENSMUST00000176329.1|Wdr37|ENSMUSG00000021147.10|WD repeat domain 37
mm10_v2_chr3_-_122619442_122619553	1.69177	Sox2	ENSMUST00000162947.1|Fnbp1l|ENSMUSG00000039735.9|formin binding protein 1-like
mm10_v2_chr3_+_88615367_88615434	1.68837	Sox2	ENSMUST00000176539.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr1_-_38821215_38821215	1.67553	Sox2	ENSMUST00000039612.4|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr8_-_69184177_69184240	1.67119	Sox2	ENSMUST00000185176.1|Lzts1|ENSMUSG00000036306.5|leucine zipper, putative tumor suppressor 1
mm10_v2_chr7_+_75643223_75643319	1.6665	Sox2	ENSMUST00000137959.1|Akap13|ENSMUSG00000066406.8|A kinase (PRKA) anchor protein 13
mm10_v2_chr9_+_61373608_61373672	1.64693	Sox2	ENSMUST00000161689.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr4_+_136284708_136284775	1.63918	Sox2	ENSMUST00000130223.1|Zfp46|ENSMUSG00000051351.8|zinc finger protein 46
mm10_v2_chr6_+_47835650_47835725	1.62636	Sox2	ENSMUST00000079881.4|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398 	ENSMUST00000114598.1|Zfp398|ENSMUSG00000062519.7|zinc finger protein 398
mm10_v2_chr2_+_71529085_71529110	1.61989	Sox2	ENSMUST00000152711.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr17_-_78684262_78684352	1.61322	Sox2	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr2_+_3713478_3713500	1.61294	Sox2	ENSMUST00000115053.2|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr4_+_116221689_116221698	1.60008	Sox2	ENSMUST00000106490.2|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr12_-_84946921_84946923	1.59919	Sox2	ENSMUST00000169161.1|Arel1|ENSMUSG00000042350.7|apoptosis resistant E3 ubiquitin protein ligase 1
mm10_v2_chr12_+_110601439_110601452	1.59601	Sox2	ENSMUST00000018851.7|Dync1h1|ENSMUSG00000018707.7|dynein cytoplasmic 1 heavy chain 1
mm10_v2_chr2_-_11502090_11502126	1.58816	Sox2	ENSMUST00000179584.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000170196.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000171188.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114845.3|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000114844.1|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000100411.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr19_+_44992127_44992136	1.58807	Sox2	ENSMUST00000179305.1|Sema4g|ENSMUSG00000025207.9|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
mm10_v2_chr8_-_4217459_4217503	1.58766	Sox2	ENSMUST00000176227.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr8_+_11728105_11728143	1.58212	Sox2	ENSMUST00000110909.2|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7) 	ENSMUST00000033908.6|Arhgef7|ENSMUSG00000031511.8|Rho guanine nucleotide exchange factor (GEF7)
mm10_v2_chr11_+_67586520_67586546	1.5793	Sox2	ENSMUST00000108682.2|Gas7|ENSMUSG00000033066.9|growth arrest specific 7
mm10_v2_chr4_+_43406435_43406615	1.57006	Sox2	ENSMUST00000098106.2|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2 	ENSMUST00000139198.1|Rusc2|ENSMUSG00000035969.9|RUN and SH3 domain containing 2
mm10_v2_chr16_+_17451981_17452034	1.56318	Sox2	ENSMUST00000006293.3|Crkl|ENSMUSG00000006134.3|v-crk sarcoma virus CT10 oncogene homolog (avian)-like
mm10_v2_chr18_+_36939178_36939318	1.55829	Sox2	ENSMUST00000115662.2|Pcdha2|ENSMUSG00000007440.8|protocadherin alpha 2
mm10_v2_chr16_+_20097554_20097596	1.55711	Sox2	ENSMUST00000023509.3|Klhl24|ENSMUSG00000062901.2|kelch-like 24
mm10_v2_chr5_-_131538687_131538717	1.55176	Sox2	ENSMUST00000161374.1|Auts2|ENSMUSG00000029673.11|autism susceptibility candidate 2
mm10_v2_chr10_+_80151154_80151375	1.54566	Sox2	ENSMUST00000146516.1|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000144526.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr11_-_106579111_106579141	1.54279	Sox2	ENSMUST00000103070.2|Tex2|ENSMUSG00000040548.9|testis expressed gene 2
mm10_v2_chr10_-_61452658_61452813	1.53993	Sox2	ENSMUST00000167087.1|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2 	ENSMUST00000020288.7|Eif4ebp2|ENSMUSG00000020091.8|eukaryotic translation initiation factor 4E binding protein 2
mm10_v2_chr11_+_104231515_104231528	1.53973	Sox2	ENSMUST00000106993.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr2_-_6884940_6884957	1.53324	Sox2	ENSMUST00000183091.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182851.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr6_-_121003099_121003153	1.5239	Sox2	ENSMUST00000098457.2|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3 	ENSMUST00000150503.1|Mical3|ENSMUSG00000051586.8|microtubule associated monooxygenase, calponin and LIM domain containing 3
mm10_v2_chrX_-_105929206_105929321	1.5215	Sox2	ENSMUST00000134381.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000154866.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
mm10_v2_chr12_-_14152038_14152069	1.52097	Sox2	ENSMUST00000020926.6|Fam84a|ENSMUSG00000020607.6|family with sequence similarity 84, member A
mm10_v2_chr2_-_165898951_165899016	1.50471	Sox2	ENSMUST00000136842.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr7_-_37769624_37769677	1.50087	Sox2	ENSMUST00000175941.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr16_-_76373014_76373103	1.50084	Sox2	ENSMUST00000054178.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr6_+_92092369_92092433	1.4989	Sox2	ENSMUST00000113463.1|Nr2c2|ENSMUSG00000005893.8|nuclear receptor subfamily 2, group C, member 2
mm10_v2_chr10_+_61475782_61475834	1.49243	Sox2	ENSMUST00000049242.7|Lrrc20|ENSMUSG00000037151.7|leucine rich repeat containing 20
mm10_v2_chr4_-_20778527_20778593	1.49087	Sox2	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr11_-_61175020_61175060	1.48637	Sox2	ENSMUST00000041683.8|Usp22|ENSMUSG00000042506.9|ubiquitin specific peptidase 22
mm10_v2_chr9_-_122903102_122903184	1.4669	Sox2	ENSMUST00000180877.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene 	ENSMUST00000180486.1|A530083I20Rik|ENSMUSG00000097322.1|RIKEN cDNA A530083I20 gene
mm10_v2_chr12_+_8674391_8674470	1.46458	Sox2	ENSMUST00000163569.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169089.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr15_+_82275197_82275281	1.46303	Sox2	ENSMUST00000116423.1|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr15_+_100038635_100038669	1.46198	Sox2	ENSMUST00000100203.3|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr16_+_45093611_45093622	1.46001	Sox2	ENSMUST00000099498.2|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr16_-_20425881_20425986	1.45435	Sox2	ENSMUST00000077867.3|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr16_+_11405648_11405713	1.45026	Sox2	ENSMUST00000096273.2|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr11_+_94044111_94044121	1.44525	Sox2	ENSMUST00000132079.1|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr4_+_125490688_125490704	1.44262	Sox2	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr9_+_45430293_45430379	1.44138	Sox2	ENSMUST00000034592.8|Dscaml1|ENSMUSG00000032087.9|Down syndrome cell adhesion molecule like 1
mm10_v2_chr8_+_124793013_124793056	1.44089	Sox2	ENSMUST00000167588.1|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr1_-_190169399_190169526	1.43991	Sox2	ENSMUST00000010319.7|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr8_+_12947935_12947962	1.42946	Sox2	ENSMUST00000110871.1|Mcf2l|ENSMUSG00000031442.14|mcf.2 transforming sequence-like
mm10_v2_chr9_+_61373482_61373535	1.42769	Sox2	ENSMUST00000160541.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161207.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159630.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr8_-_4216912_4217003	1.41512	Sox2	ENSMUST00000177491.1|BC068157|ENSMUSG00000064125.8|cDNA sequence BC068157
mm10_v2_chr1_+_34579693_34579751	1.40709	Sox2	ENSMUST00000052670.8|Amer3|ENSMUSG00000045174.8|APC membrane recruitment 3
mm10_v2_chr5_-_102069905_102069940	1.40175	Sox2	ENSMUST00000053177.7|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3 	ENSMUST00000174698.1|Wdfy3|ENSMUSG00000043940.8|WD repeat and FYVE domain containing 3
mm10_v2_chr15_+_25622525_25622558	1.40143	Sox2	ENSMUST00000110457.1|Myo10|ENSMUSG00000022272.11|myosin X 	ENSMUST00000137601.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr6_-_18514802_18514869	1.39502	Sox2	ENSMUST00000090601.5|Cttnbp2|ENSMUSG00000000416.10|cortactin binding protein 2
mm10_v2_chr2_+_65930117_65930190	1.39077	Sox2	ENSMUST00000176109.1|Csrnp3|ENSMUSG00000044647.10|cysteine-serine-rich nuclear protein 3
mm10_v2_chr10_+_80150448_80150482	1.38298	Sox2	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr1_+_66386968_66386999	1.37493	Sox2	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr17_+_55445375_55445389	1.37317	Sox2	ENSMUST00000133899.1|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2 	ENSMUST00000086878.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr1_+_161142706_161142767	1.36884	Sox2	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr2_-_7396192_7396241	1.36775	Sox2	ENSMUST00000137733.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr5_+_111417263_111417442	1.35879	Sox2	ENSMUST00000094463.4|Mn1|ENSMUSG00000070576.4|meningioma 1
mm10_v2_chr7_-_78577771_78577975	1.34468	Sox2	ENSMUST00000039438.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr5_+_44100442_44100442	1.34264	Sox2	ENSMUST00000072800.4|Gm16401|ENSMUSG00000072962.2|predicted gene 16401
mm10_v2_chr8_+_124793061_124793092	1.34095	Sox2	ENSMUST00000041106.7|Trim67|ENSMUSG00000036913.8|tripartite motif-containing 67
mm10_v2_chr7_-_115846080_115846112	1.33953	Sox2	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr2_+_32151074_32151262	1.3266	Sox2	ENSMUST00000036691.7|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B 	ENSMUST00000069817.8|Prrc2b|ENSMUSG00000039262.10|proline-rich coiled-coil 2B
mm10_v2_chr1_+_133246092_133246099	1.32263	Sox2	ENSMUST00000038295.8|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6 	ENSMUST00000105082.2|Plekha6|ENSMUSG00000041757.9|pleckstrin homology domain containing, family A member 6
mm10_v2_chr3_-_127225917_127225959	1.31687	Sox2	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr13_-_49147931_49148037	1.31637	Sox2	ENSMUST00000162581.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110097.2|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000049265.8|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000035538.6|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000110096.1|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2 	ENSMUST00000091623.3|Wnk2|ENSMUSG00000037989.9|WNK lysine deficient protein kinase 2
mm10_v2_chr8_-_83166170_83166170	1.31445	Sox2	ENSMUST00000098605.2|Gm10645|ENSMUSG00000074228.2|predicted gene 10645
mm10_v2_chr5_+_35893319_35893426	1.30852	Sox2	ENSMUST00000064571.4|Afap1|ENSMUSG00000029094.5|actin filament associated protein 1
mm10_v2_chr6_-_87335758_87335775	1.30752	Sox2	ENSMUST00000042025.9|Antxr1|ENSMUSG00000033420.10|anthrax toxin receptor 1
mm10_v2_chr15_-_79742518_79742562	1.30736	Sox2	ENSMUST00000089311.4|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2 	ENSMUST00000046259.7|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr10_+_89873497_89873672	1.29949	Sox2	ENSMUST00000183156.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182936.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000099368.4|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr12_+_81631369_81631394	1.29678	Sox2	ENSMUST00000036116.5|Ttc9|ENSMUSG00000042734.5|tetratricopeptide repeat domain 9
mm10_v2_chr2_+_28513105_28513126	1.29453	Sox2	ENSMUST00000135803.1|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr1_-_60566708_60566769	1.29288	Sox2	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr11_+_72796164_72796246	1.28973	Sox2	ENSMUST00000172220.1|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr13_+_9276477_9276620	1.28517	Sox2	ENSMUST00000174552.1|Dip2c|ENSMUSG00000048264.9|DIP2 disco-interacting protein 2 homolog C (Drosophila)
mm10_v2_chr14_+_60378242_60378292	1.27929	Sox2	ENSMUST00000022561.6|Amer2|ENSMUSG00000021986.7|APC membrane recruitment 2
mm10_v2_chr12_+_24974914_24974948	1.27393	Sox2	ENSMUST00000066652.5|Kidins220|ENSMUSG00000036333.10|kinase D-interacting substrate 220
mm10_v2_chr1_-_93101854_93101879	1.272	Sox2	ENSMUST00000171796.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A 	ENSMUST00000171556.1|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr7_-_73537621_73537766	1.26643	Sox2	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr9_+_61373219_61373438	1.2621	Sox2	ENSMUST00000162583.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161993.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160882.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160724.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000162973.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159050.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr17_-_56476462_56476483	1.26131	Sox2	ENSMUST00000067538.5|Ptprs|ENSMUSG00000013236.10|protein tyrosine phosphatase, receptor type, S
mm10_v2_chr6_-_38876163_38876234	1.26006	Sox2	ENSMUST00000161779.1|Hipk2|ENSMUSG00000061436.9|homeodomain interacting protein kinase 2
mm10_v2_chr6_-_42693030_42693070	1.24821	Sox2	ENSMUST00000045140.4|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr4_-_148287927_148287965	1.24776	Sox2	ENSMUST00000047720.8|Ptchd2|ENSMUSG00000041544.11|patched domain containing 2
mm10_v2_chr4_+_107802277_107802413	1.24327	Sox2	ENSMUST00000106733.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000030356.3|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000106732.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor 	ENSMUST00000126573.1|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr16_+_23224724_23224804	1.24303	Sox2	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr10_-_8518801_8518851	1.24059	Sox2	ENSMUST00000061601.7|Ust|ENSMUSG00000047712.7|uronyl-2-sulfotransferase
mm10_v2_chr16_+_78301673_78301760	1.24007	Sox2	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr1_+_75546449_75546514	1.23758	Sox2	ENSMUST00000150142.1|Slc4a3|ENSMUSG00000006576.10|solute carrier family 4 (anion exchanger), member 3
mm10_v2_chr4_+_138217235_138217310	1.23348	Sox2	ENSMUST00000130071.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr2_-_20968526_20968625	1.22349	Sox2	ENSMUST00000141298.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21 	ENSMUST00000125783.2|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr4_+_137862270_137862321	1.21478	Sox2	ENSMUST00000130407.1|Ece1|ENSMUSG00000057530.8|endothelin converting enzyme 1
mm10_v2_chr4_-_44167988_44168008	1.21324	Sox2	ENSMUST00000143337.1|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr8_-_84800024_84800283	1.21204	Sox2	ENSMUST00000126806.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X 	ENSMUST00000076715.6|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr3_-_127225847_127225915	1.21191	Sox2	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr3_+_103576081_103576147	1.21151	Sox2	ENSMUST00000183637.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000117221.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118117.1|Syt6|ENSMUSG00000027849.12|synaptotagmin VI 	ENSMUST00000118563.2|Syt6|ENSMUSG00000027849.12|synaptotagmin VI
mm10_v2_chr11_+_115765420_115765466	1.20884	Sox2	ENSMUST00000093912.4|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000136720.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000103034.3|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene 	ENSMUST00000141871.1|2310067B10Rik|ENSMUSG00000020747.11|RIKEN cDNA 2310067B10 gene
mm10_v2_chr12_-_83921809_83921898	1.19768	Sox2	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr10_-_83534130_83534141	1.19362	Sox2	ENSMUST00000020497.7|Aldh1l2|ENSMUSG00000020256.8|aldehyde dehydrogenase 1 family, member L2
mm10_v2_chr4_+_107830958_107830985	1.19355	Sox2	ENSMUST00000106731.2|Lrp8|ENSMUSG00000028613.8|low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
mm10_v2_chr2_-_11502025_11502049	1.18396	Sox2	ENSMUST00000114846.2|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr5_-_139484420_139484473	1.18063	Sox2	ENSMUST00000150992.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr17_+_52602700_52602717	1.17767	Sox2	ENSMUST00000039366.10|Kcnh8|ENSMUSG00000035580.10|potassium voltage-gated channel, subfamily H (eag-related), member 8
mm10_v2_chr7_-_78578308_78578408	1.17617	Sox2	ENSMUST00000039431.7|Ntrk3|ENSMUSG00000059146.6|neurotrophic tyrosine kinase, receptor, type 3
mm10_v2_chr11_+_20647149_20647156	1.16451	Sox2	ENSMUST00000109585.1|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr10_-_84440591_84440604	1.15264	Sox2	ENSMUST00000020220.8|Nuak1|ENSMUSG00000020032.8|NUAK family, SNF1-like kinase, 1
mm10_v2_chr6_-_114921778_114921837	1.14055	Sox2	ENSMUST00000032459.7|Vgll4|ENSMUSG00000030315.9|vestigial like 4 (Drosophila)
mm10_v2_chr10_+_4266323_4266341	1.13986	Sox2	ENSMUST00000045730.5|Akap12|ENSMUSG00000038587.8|A kinase (PRKA) anchor protein (gravin) 12
mm10_v2_chr9_-_44721383_44721484	1.1379	Sox2	ENSMUST00000148929.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1 	ENSMUST00000123406.1|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr16_-_34573526_34573554	1.13701	Sox2	ENSMUST00000114961.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr8_-_90348126_90348302	1.13604	Sox2	ENSMUST00000176034.1|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3 	ENSMUST00000176616.1|Tox3|ENSMUSG00000043668.7|TOX high mobility group box family member 3
mm10_v2_chrX_-_165004829_165004829	1.12826	Sox2	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr4_+_32238950_32238964	1.12677	Sox2	ENSMUST00000037416.6|Bach2|ENSMUSG00000040270.10|BTB and CNC homology 2
mm10_v2_chr13_+_60602182_60602231	1.12423	Sox2	ENSMUST00000044083.7|Dapk1|ENSMUSG00000021559.7|death associated protein kinase 1
mm10_v2_chr4_-_149307506_149307703	1.12385	Sox2	ENSMUST00000055647.8|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000030806.5|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B 	ENSMUST00000060537.6|Kif1b|ENSMUSG00000063077.8|kinesin family member 1B
mm10_v2_chr2_-_11502067_11502080	1.1207	Sox2	ENSMUST00000028114.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 	ENSMUST00000049849.6|Pfkfb3|ENSMUSG00000026773.13|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3
mm10_v2_chr15_-_79742493_79742511	1.12047	Sox2	ENSMUST00000100439.3|Sun2|ENSMUSG00000042524.7|Sad1 and UNC84 domain containing 2
mm10_v2_chr2_-_25983236_25983290	1.11961	Sox2	ENSMUST00000114167.2|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000091268.4|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1 	ENSMUST00000183461.1|Camsap1|ENSMUSG00000026933.11|calmodulin regulated spectrin-associated protein 1
mm10_v2_chr16_+_43503607_43503642	1.11831	Sox2	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr12_+_95692212_95692246	1.11816	Sox2	ENSMUST00000057324.3|Flrt2|ENSMUSG00000047414.6|fibronectin leucine rich transmembrane protein 2
mm10_v2_chr10_+_43479140_43479194	1.11361	Sox2	ENSMUST00000167488.1|Bend3|ENSMUSG00000038214.8|BEN domain containing 3 	ENSMUST00000040147.7|Bend3|ENSMUSG00000038214.8|BEN domain containing 3
mm10_v2_chr7_-_84409959_84410002	1.11105	Sox2	ENSMUST00000085077.3|Arnt2|ENSMUSG00000015709.8|aryl hydrocarbon receptor nuclear translocator 2
mm10_v2_chr17_-_34121944_34121988	1.10664	Sox2	ENSMUST00000151986.1|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr16_+_41532999_41533069	1.10349	Sox2	ENSMUST00000099761.3|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chrX_-_59567348_59567472	1.10006	Sox2	ENSMUST00000124402.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr1_-_158356258_158356313	1.09591	Sox2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr14_+_59201418_59201503	1.09348	Sox2	ENSMUST00000140136.2|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 	ENSMUST00000142326.1|Rcbtb1|ENSMUSG00000035469.11|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
mm10_v2_chr7_-_29505447_29505473	1.08754	Sox2	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr11_-_76468396_76468473	1.08677	Sox2	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr19_+_6364557_6364668	1.08165	Sox2	ENSMUST00000155973.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr2_+_118900377_118900397	1.07808	Sox2	ENSMUST00000151162.1|Bahd1|ENSMUSG00000040007.8|bromo adjacent homology domain containing 1
mm10_v2_chr18_-_23038656_23038676	1.0775	Sox2	ENSMUST00000081423.6|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr5_+_34949435_34949504	1.07672	Sox2	ENSMUST00000030984.7|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr8_-_41054771_41054802	1.07516	Sox2	ENSMUST00000093534.4|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr18_-_68300194_68300228	1.07425	Sox2	ENSMUST00000152193.1|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr11_+_72796254_72796268	1.06378	Sox2	ENSMUST00000069395.5|Zzef1|ENSMUSG00000055670.7|zinc finger, ZZ-type with EF hand domain 1
mm10_v2_chr7_+_16944645_16944720	1.06069	Sox2	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr2_-_165884636_165884874	1.05627	Sox2	ENSMUST00000177633.1|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000018050.7|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8 	ENSMUST00000088113.4|Zmynd8|ENSMUSG00000039671.12|zinc finger, MYND-type containing 8
mm10_v2_chr7_-_47133395_47133437	1.05444	Sox2	ENSMUST00000107617.1|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr5_-_38684743_38684826	1.05202	Sox2	ENSMUST00000057258.4|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000178760.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000179555.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B 	ENSMUST00000180214.1|Zfp518b|ENSMUSG00000046572.4|zinc finger protein 518B
mm10_v2_chr17_+_23679363_23679377	1.05062	Sox2	ENSMUST00000024699.2|Cldn6|ENSMUSG00000023906.2|claudin 6
mm10_v2_chr4_+_150281573_150281646	1.0465	Sox2	ENSMUST00000105682.2|Rere|ENSMUSG00000039852.10|arginine glutamic acid dipeptide (RE) repeats
mm10_v2_chr18_+_82554463_82554583	1.0454	Sox2	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr7_+_79273201_79273270	1.04527	Sox2	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chr1_-_36557517_36557561	1.03917	Sox2	ENSMUST00000114990.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000128104.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000027295.4|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr12_+_29938036_29938059	1.03836	Sox2	ENSMUST00000122328.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila) 	ENSMUST00000118321.1|Pxdn|ENSMUSG00000020674.10|peroxidasin homolog (Drosophila)
mm10_v2_chr2_-_24919572_24919616	1.03662	Sox2	ENSMUST00000046227.5|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000114432.2|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000091348.4|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000150379.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000152161.1|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1 	ENSMUST00000102938.3|Ehmt1|ENSMUSG00000036893.10|euchromatic histone methyltransferase 1
mm10_v2_chr7_+_105375053_105375098	1.03614	Sox2	ENSMUST00000106805.2|Gm5901|ENSMUSG00000078611.2|predicted gene 5901
mm10_v2_chr3_-_38484831_38484864	1.03501	Sox2	ENSMUST00000120875.1|Ankrd50|ENSMUSG00000044864.10|ankyrin repeat domain 50
mm10_v2_chr3_+_69316857_69316869	1.03495	Sox2	ENSMUST00000029355.6|Ppm1l|ENSMUSG00000027784.8|protein phosphatase 1 (formerly 2C)-like
mm10_v2_chr8_-_70120816_70120873	1.03301	Sox2	ENSMUST00000002412.8|Ncan|ENSMUSG00000002341.8|neurocan
mm10_v2_chr2_-_7395879_7395912	1.02875	Sox2	ENSMUST00000182404.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr3_-_88762244_88762384	1.02326	Sox2	ENSMUST00000183267.1|Syt11|ENSMUSG00000068923.8|synaptotagmin XI
mm10_v2_chr7_+_112679314_112679325	1.02184	Sox2	ENSMUST00000084705.5|Tead1|ENSMUSG00000055320.10|TEA domain family member 1 	ENSMUST00000059768.10|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr13_+_83573577_83573607	1.01921	Sox2	ENSMUST00000185052.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr6_+_53573364_53573394	1.01185	Sox2	ENSMUST00000047450.7|Creb5|ENSMUSG00000053007.6|cAMP responsive element binding protein 5
mm10_v2_chr18_+_37477768_37477835	1.01066	Sox2	ENSMUST00000051442.5|Pcdhb16|ENSMUSG00000047910.5|protocadherin beta 16
mm10_v2_chr4_+_130792513_130792667	1.00819	Sox2	ENSMUST00000070478.3|Sdc3|ENSMUSG00000025743.8|syndecan 3
mm10_v2_chr1_-_168431502_168431513	0.999002	Sox2	ENSMUST00000064438.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr9_+_58554799_58554799	0.996425	Sox2	ENSMUST00000098676.2|Gm10657|ENSMUSG00000074273.2|predicted gene 10657
mm10_v2_chr8_+_45628176_45628219	0.990907	Sox2	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr5_+_122643878_122644009	0.988688	Sox2	ENSMUST00000100737.3|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000121489.1|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000031425.8|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7 	ENSMUST00000086247.5|P2rx7|ENSMUSG00000029468.11|purinergic receptor P2X, ligand-gated ion channel, 7
mm10_v2_chr11_+_46055973_46056068	0.987162	Sox2	ENSMUST00000011400.7|Adam19|ENSMUSG00000011256.10|a disintegrin and metallopeptidase domain 19 (meltrin beta)
mm10_v2_chr6_-_42693087_42693100	0.98474	Sox2	ENSMUST00000121083.1|Fam115a|ENSMUSG00000036667.8|family with sequence similarity 115, member A
mm10_v2_chr11_+_83964419_83964478	0.983789	Sox2	ENSMUST00000049714.8|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000092834.5|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183714.1|Synrg|ENSMUSG00000034940.9|synergin, gamma 	ENSMUST00000183456.1|Synrg|ENSMUSG00000034940.9|synergin, gamma
mm10_v2_chr1_-_139377094_139377110	0.983253	Sox2	ENSMUST00000131586.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila) 	ENSMUST00000145244.1|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr7_+_64501949_64502048	0.981745	Sox2	ENSMUST00000138829.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr13_+_43615710_43615788	0.981656	Sox2	ENSMUST00000059986.2|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr2_+_37443273_37443339	0.975938	Sox2	ENSMUST00000133434.1|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1 	ENSMUST00000061179.5|Rabgap1|ENSMUSG00000035437.9|RAB GTPase activating protein 1
mm10_v2_chr17_-_46487641_46487682	0.969747	Sox2	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr1_+_165788681_165788728	0.969285	Sox2	ENSMUST00000161971.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000178336.1|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000005907.5|Cd247|ENSMUSG00000005763.9|CD247 antigen 	ENSMUST00000027849.4|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr11_-_74590065_74590158	0.967263	Sox2	ENSMUST00000145524.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2 	ENSMUST00000047488.7|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr2_+_92185438_92185463	0.96269	Sox2	ENSMUST00000128781.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr18_+_37755718_37755773	0.959566	Sox2	ENSMUST00000061279.7|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr7_+_24134148_24134184	0.958354	Sox2	ENSMUST00000056549.7|Zfp235|ENSMUSG00000047603.8|zinc finger protein 235
mm10_v2_chr13_+_65278839_65278903	0.957453	Sox2	ENSMUST00000155732.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr6_-_6882068_6882092	0.957298	Sox2	ENSMUST00000142635.1|Dlx5|ENSMUSG00000029755.9|distal-less homeobox 5 	ENSMUST00000052609.8|Dlx5|ENSMUSG00000029755.9|distal-less homeobox 5
mm10_v2_chr5_+_30711849_30711905	0.955522	Sox2	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr16_+_43508118_43508263	0.953286	Sox2	ENSMUST00000114690.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_-_148928619_148928659	0.951857	Sox2	ENSMUST00000149169.1|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1 	ENSMUST00000047257.8|Katnal1|ENSMUSG00000041298.9|katanin p60 subunit A-like 1
mm10_v2_chr1_-_190170178_190170237	0.949389	Sox2	ENSMUST00000177288.1|Prox1|ENSMUSG00000010175.7|prospero-related homeobox 1
mm10_v2_chr15_-_39943963_39944029	0.945411	Sox2	ENSMUST00000110305.2|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr19_-_40588374_40588426	0.944364	Sox2	ENSMUST00000175932.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000176955.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1 	ENSMUST00000149476.2|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr2_-_45110241_45110265	0.939187	Sox2	ENSMUST00000177302.1|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr13_-_41358990_41359006	0.935348	Sox2	ENSMUST00000163623.1|Nedd9|ENSMUSG00000021365.8|neural precursor cell expressed, developmentally down-regulated gene 9
mm10_v2_chr3_+_65528457_65528471	0.934978	Sox2	ENSMUST00000130705.1|Tiparp|ENSMUSG00000034640.3|TCDD-inducible poly(ADP-ribose) polymerase
mm10_v2_chr8_-_84773381_84773427	0.931168	Sox2	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr12_+_75818294_75818356	0.928571	Sox2	ENSMUST00000143031.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000044217.9|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2 	ENSMUST00000150317.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr13_+_42709482_42709581	0.927945	Sox2	ENSMUST00000066928.5|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1 	ENSMUST00000148891.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr11_-_95309557_95309602	0.926563	Sox2	ENSMUST00000092766.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7 	ENSMUST00000072621.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7
mm10_v2_chr1_+_39900883_39900963	0.924298	Sox2	ENSMUST00000163854.2|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4 	ENSMUST00000168431.1|Map4k4|ENSMUSG00000026074.8|mitogen-activated protein kinase kinase kinase kinase 4
mm10_v2_chr9_-_65827544_65827576	0.923611	Sox2	ENSMUST00000159109.1|Zfp609|ENSMUSG00000040524.9|zinc finger protein 609
mm10_v2_chr5_+_75075464_75075601	0.922338	Sox2	ENSMUST00000160104.1|Gsx2|ENSMUSG00000035946.6|GS homeobox 2 	ENSMUST00000040477.3|Gsx2|ENSMUSG00000035946.6|GS homeobox 2
mm10_v2_chr2_-_156111863_156111943	0.921136	Sox2	ENSMUST00000154889.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000079312.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000153634.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000133921.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000131377.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000183518.1|RP23-220D12.12|ENSMUSG00000098950.1|RNA-binding protein 12  	ENSMUST00000184265.1|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109607.3|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000109608.2|Cpne1|ENSMUSG00000074643.6|copine I
mm10_v2_chr2_+_155381808_155381884	0.91531	Sox2	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr17_-_35909626_35909700	0.915163	Sox2	ENSMUST00000141132.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr17_-_35703971_35703994	0.915017	Sox2	ENSMUST00000148065.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr5_-_73256555_73256636	0.908275	Sox2	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr17_-_26069409_26069550	0.904429	Sox2	ENSMUST00000120691.1|Rab11fip3|ENSMUSG00000037098.11|RAB11 family interacting protein 3 (class II)
mm10_v2_chr6_-_86733218_86733256	0.904111	Sox2	ENSMUST00000113679.1|Gmcl1|ENSMUSG00000001157.7|germ cell-less homolog 1 (Drosophila)
mm10_v2_chr9_-_72111755_72111821	0.899144	Sox2	ENSMUST00000183492.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184523.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000034755.6|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr5_+_30711564_30711586	0.898604	Sox2	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr1_+_153900572_153900606	0.896431	Sox2	ENSMUST00000139476.1|Glul|ENSMUSG00000026473.9|glutamate-ammonia ligase (glutamine synthetase)
mm10_v2_chr7_+_97081711_97081778	0.896006	Sox2	ENSMUST00000004622.5|Gab2|ENSMUSG00000004508.5|growth factor receptor bound protein 2-associated protein 2
mm10_v2_chr2_-_146511992_146512015	0.89596	Sox2	ENSMUST00000109986.2|Ralgapa2|ENSMUSG00000037110.13|Ral GTPase activating protein, alpha subunit 2 (catalytic)
mm10_v2_chr1_-_55226768_55226813	0.894284	Sox2	ENSMUST00000027121.8|Rftn2|ENSMUSG00000025978.8|raftlin family member 2 	ENSMUST00000114428.2|Rftn2|ENSMUSG00000025978.8|raftlin family member 2
mm10_v2_chr13_+_97241096_97241116	0.893151	Sox2	ENSMUST00000041623.7|Enc1|ENSMUSG00000041773.7|ectodermal-neural cortex 1
mm10_v2_chr7_-_130519961_130520004	0.891202	Sox2	ENSMUST00000178534.1|Ate1|ENSMUSG00000030850.9|arginyltransferase 1 	ENSMUST00000094017.3|Ate1|ENSMUSG00000030850.9|arginyltransferase 1
mm10_v2_chr11_+_3330781_3330812	0.889174	Sox2	ENSMUST00000136536.1|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1 	ENSMUST00000093399.4|Pik3ip1|ENSMUSG00000034614.8|phosphoinositide-3-kinase interacting protein 1
mm10_v2_chr11_+_80477015_80477085	0.888019	Sox2	ENSMUST00000053413.10|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35) 	ENSMUST00000147694.1|Cdk5r1|ENSMUSG00000048895.12|cyclin-dependent kinase 5, regulatory subunit 1 (p35)
mm10_v2_chr15_+_92597104_92597121	0.884245	Sox2	ENSMUST00000035399.8|Pdzrn4|ENSMUSG00000036218.9|PDZ domain containing RING finger 4
mm10_v2_chr2_-_173276144_173276189	0.882366	Sox2	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr1_+_165788746_165788769	0.876274	Sox2	ENSMUST00000161559.2|Cd247|ENSMUSG00000005763.9|CD247 antigen
mm10_v2_chr7_+_64502090_64502155	0.875185	Sox2	ENSMUST00000137732.1|Apba2|ENSMUSG00000030519.8|amyloid beta (A4) precursor protein-binding, family A, member 2
mm10_v2_chr3_+_53463666_53463681	0.871865	Sox2	ENSMUST00000058577.4|Proser1|ENSMUSG00000049504.11|proline and serine rich 1
mm10_v2_chr14_+_61599493_61599548	0.869535	Sox2	ENSMUST00000039562.6|Trim13|ENSMUSG00000035235.6|tripartite motif-containing 13
mm10_v2_chr15_-_102722120_102722137	0.864429	Sox2	ENSMUST00000171838.1|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr4_+_48049080_48049114	0.864066	Sox2	ENSMUST00000153369.1|Nr4a3|ENSMUSG00000028341.3|nuclear receptor subfamily 4, group A, member 3
mm10_v2_chr18_+_24205937_24206002	0.859841	Sox2	ENSMUST00000164998.1|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr4_+_132638987_132639118	0.859786	Sox2	ENSMUST00000135299.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000081726.6|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000180250.1|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000020197.7|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila) 	ENSMUST00000079157.4|Eya3|ENSMUSG00000028886.9|eyes absent 3 homolog (Drosophila)
mm10_v2_chr2_-_77280589_77280648	0.857007	Sox2	ENSMUST00000102659.1|Sestd1|ENSMUSG00000042272.11|SEC14 and spectrin domains 1
mm10_v2_chr9_+_109095427_109095453	0.851373	Sox2	ENSMUST00000072093.6|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chrX_+_93654863_93654981	0.845288	Sox2	ENSMUST00000113933.2|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr9_-_15045378_15045502	0.844817	Sox2	ENSMUST00000164273.1|Panx1|ENSMUSG00000031934.7|pannexin 1
mm10_v2_chr16_+_45094036_45094053	0.843193	Sox2	ENSMUST00000061050.5|Ccdc80|ENSMUSG00000022665.8|coiled-coil domain containing 80
mm10_v2_chr17_-_35697971_35698001	0.840631	Sox2	ENSMUST00000146472.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr7_-_132317198_132317228	0.837539	Sox2	ENSMUST00000080215.5|Chst15|ENSMUSG00000030930.7|carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15
mm10_v2_chr1_+_62703667_62703702	0.8343	Sox2	ENSMUST00000114155.1|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000027112.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000063594.6|Nrp2|ENSMUSG00000025969.9|neuropilin 2 	ENSMUST00000114157.2|Nrp2|ENSMUSG00000025969.9|neuropilin 2
mm10_v2_chr16_+_23226014_23226077	0.834227	Sox2	ENSMUST00000178797.1|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr19_+_30030589_30030634	0.833842	Sox2	ENSMUST00000112552.1|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr5_+_33820695_33820835	0.833718	Sox2	ENSMUST00000075812.4|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000114397.2|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human) 	ENSMUST00000155880.1|Whsc1|ENSMUSG00000057406.10|Wolf-Hirschhorn syndrome candidate 1 (human)
mm10_v2_chr6_-_13839916_13839942	0.832805	Sox2	ENSMUST00000060442.7|Gpr85|ENSMUSG00000048216.7|G protein-coupled receptor 85
mm10_v2_chr2_+_160731258_160731310	0.831673	Sox2	ENSMUST00000103115.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr7_+_91090728_91090751	0.829289	Sox2	ENSMUST00000074273.3|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr5_-_114091358_114091404	0.827499	Sox2	ENSMUST00000150106.1|Svop|ENSMUSG00000042078.8|SV2 related protein
mm10_v2_chr12_+_19606929_19606929	0.827115	Sox2	ENSMUST00000105167.1|Gm9257|ENSMUSG00000095254.1|predicted gene 9257
mm10_v2_chr12_-_101028983_101029042	0.826077	Sox2	ENSMUST00000068411.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C 	ENSMUST00000085096.3|Ccdc88c|ENSMUSG00000021182.8|coiled-coil domain containing 88C
mm10_v2_chr1_+_158362261_158362304	0.822536	Sox2	ENSMUST00000046110.9|Astn1|ENSMUSG00000026587.9|astrotactin 1
mm10_v2_chr2_+_102706356_102706438	0.820846	Sox2	ENSMUST00000123759.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000111212.1|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2 	ENSMUST00000005220.4|Slc1a2|ENSMUSG00000005089.9|solute carrier family 1 (glial high affinity glutamate transporter), member 2
mm10_v2_chr15_-_98871175_98871204	0.820801	Sox2	ENSMUST00000178486.2|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D 	ENSMUST00000023741.9|Kmt2d|ENSMUSG00000048154.10|lysine (K)-specific methyltransferase 2D
mm10_v2_chr18_-_77565050_77565162	0.81683	Sox2	ENSMUST00000182153.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182146.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000026494.7|Rnf165|ENSMUSG00000025427.8|ring finger protein 165 	ENSMUST00000182024.1|Rnf165|ENSMUSG00000025427.8|ring finger protein 165
mm10_v2_chr5_-_134552414_134552444	0.814714	Sox2	ENSMUST00000100647.2|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2 	ENSMUST00000036999.6|Clip2|ENSMUSG00000063146.5|CAP-GLY domain containing linker protein 2
mm10_v2_chr13_+_49341549_49341623	0.814107	Sox2	ENSMUST00000110084.2|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000048544.6|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila) 	ENSMUST00000110085.3|Bicd2|ENSMUSG00000037933.9|bicaudal D homolog 2 (Drosophila)
mm10_v2_chr13_-_105271039_105271039	0.810342	Sox2	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr1_-_88702121_88702221	0.809162	Sox2	ENSMUST00000159814.1|Arl4c|ENSMUSG00000049866.6|ADP-ribosylation factor-like 4C
mm10_v2_chr2_-_140671440_140671458	0.807104	Sox2	ENSMUST00000099301.1|Flrt3|ENSMUSG00000079021.1|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr17_-_25433775_25433790	0.806953	Sox2	ENSMUST00000159610.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000159048.1|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit 	ENSMUST00000078496.5|Cacna1h|ENSMUSG00000024112.10|calcium channel, voltage-dependent, T type, alpha 1H subunit
mm10_v2_chr7_+_91090697_91090727	0.806409	Sox2	ENSMUST00000107196.2|Dlg2|ENSMUSG00000052572.9|discs, large homolog 2 (Drosophila)
mm10_v2_chr2_+_181763315_181763335	0.806135	Sox2	ENSMUST00000081125.4|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr3_+_88142536_88142572	0.805353	Sox2	ENSMUST00000107558.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000107559.2|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr1_-_189343342_189343358	0.80506	Sox2	ENSMUST00000079451.6|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2
mm10_v2_chr2_-_27426992_27427061	0.804374	Sox2	ENSMUST00000056176.7|Vav2|ENSMUSG00000009621.12|vav 2 oncogene
mm10_v2_chr7_+_28180226_28180266	0.801415	Sox2	ENSMUST00000172467.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr1_-_189343704_189343832	0.801139	Sox2	ENSMUST00000180044.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2 	ENSMUST00000110920.1|Kcnk2|ENSMUSG00000037624.9|potassium channel, subfamily K, member 2
mm10_v2_chr19_-_4906598_4906632	0.800877	Sox2	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr5_+_26904682_26904710	0.799296	Sox2	ENSMUST00000120555.1|Dpp6|ENSMUSG00000061576.9|dipeptidylpeptidase 6
mm10_v2_chr11_+_121237216_121237289	0.797727	Sox2	ENSMUST00000103015.3|Narf|ENSMUSG00000000056.7|nuclear prelamin A recognition factor
mm10_v2_chr14_+_101840602_101840677	0.796685	Sox2	ENSMUST00000159314.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr15_+_100154379_100154411	0.79449	Sox2	ENSMUST00000023768.6|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila) 	ENSMUST00000108971.2|Dip2b|ENSMUSG00000023026.9|DIP2 disco-interacting protein 2 homolog B (Drosophila)
mm10_v2_chr14_-_72602945_72603003	0.793202	Sox2	ENSMUST00000162825.1|Fndc3a|ENSMUSG00000033487.8|fibronectin type III domain containing 3A
mm10_v2_chr15_-_79658749_79658798	0.788399	Sox2	ENSMUST00000109646.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr8_-_105289465_105289541	0.787005	Sox2	ENSMUST00000171788.1|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene 	ENSMUST00000014981.6|4931428F04Rik|ENSMUSG00000014837.8|RIKEN cDNA 4931428F04 gene
mm10_v2_chr9_-_105495475_105495489	0.78283	Sox2	ENSMUST00000176036.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr14_+_101840501_101840554	0.781815	Sox2	ENSMUST00000159026.1|Lmo7|ENSMUSG00000033060.9|LIM domain only 7
mm10_v2_chr9_+_100643755_100643770	0.778258	Sox2	ENSMUST00000133388.1|Stag1|ENSMUSG00000037286.9|stromal antigen 1
mm10_v2_chr11_-_76571527_76571558	0.775897	Sox2	ENSMUST00000072740.6|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chr4_-_155863362_155863362	0.775086	Sox2	ENSMUST00000030949.3|Tas1r3|ENSMUSG00000029072.3|taste receptor, type 1, member 3
mm10_v2_chr3_-_116968827_116968858	0.774843	Sox2	ENSMUST00000119557.1|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr2_-_113217051_113217094	0.773349	Sox2	ENSMUST00000080673.5|Ryr3|ENSMUSG00000057378.8|ryanodine receptor 3
mm10_v2_chr12_+_29528382_29528468	0.772364	Sox2	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr15_-_58214882_58214926	0.770314	Sox2	ENSMUST00000022986.6|Fbxo32|ENSMUSG00000022358.6|F-box protein 32
mm10_v2_chr19_+_5740885_5740904	0.763167	Sox2	ENSMUST00000081496.5|Ltbp3|ENSMUSG00000024940.10|latent transforming growth factor beta binding protein 3
mm10_v2_chr3_-_146781351_146781431	0.759651	Sox2	ENSMUST00000005164.7|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr18_-_34624562_34624601	0.758991	Sox2	ENSMUST00000003876.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115766.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000097626.3|Brd8|ENSMUSG00000003778.8|bromodomain containing 8 	ENSMUST00000115765.1|Brd8|ENSMUSG00000003778.8|bromodomain containing 8
mm10_v2_chr7_-_28598140_28598185	0.756932	Sox2	ENSMUST00000040531.8|Samd4b|ENSMUSG00000037513.9|sterile alpha motif domain containing 4B 	ENSMUST00000108283.1|Pak4|ENSMUSG00000030602.6|p21 protein (Cdc42/Rac)-activated kinase 4
mm10_v2_chr4_+_102570065_102570124	0.754414	Sox2	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr11_-_121229095_121229292	0.753021	Sox2	ENSMUST00000137299.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000169393.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr6_-_28831747_28831747	0.75253	Sox2	ENSMUST00000062304.5|Lrrc4|ENSMUSG00000049939.5|leucine rich repeat containing 4
mm10_v2_chr16_-_20426322_20426372	0.750104	Sox2	ENSMUST00000115547.2|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5 	ENSMUST00000096199.4|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr11_-_74590186_74590215	0.749644	Sox2	ENSMUST00000102521.1|Rap1gap2|ENSMUSG00000038807.11|RAP1 GTPase activating protein 2
mm10_v2_chr7_+_28179469_28179535	0.748497	Sox2	ENSMUST00000085901.6|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b 	ENSMUST00000172761.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr11_+_32533290_32533305	0.746991	Sox2	ENSMUST00000102821.3|Stk10|ENSMUSG00000020272.8|serine/threonine kinase 10
mm10_v2_chr2_+_153161303_153161339	0.744464	Sox2	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chr12_+_21111720_21111776	0.740426	Sox2	ENSMUST00000064595.8|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000101562.4|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 	ENSMUST00000090834.6|Asap2|ENSMUSG00000052632.9|ArfGAP with SH3 domain, ankyrin repeat and PH domain 2
mm10_v2_chr4_-_118179628_118179682	0.740239	Sox2	ENSMUST00000097911.2|Kdm4a|ENSMUSG00000033326.9|lysine (K)-specific demethylase 4A
mm10_v2_chr12_+_84996309_84996419	0.740081	Sox2	ENSMUST00000168977.1|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1 	ENSMUST00000021670.8|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr1_+_6734827_6734874	0.738623	Sox2	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr13_+_40886758_40886818	0.737597	Sox2	ENSMUST00000069958.7|Gcnt2|ENSMUSG00000021360.9|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
mm10_v2_chr15_-_96642883_96642984	0.733927	Sox2	ENSMUST00000088452.4|Slc38a1|ENSMUSG00000023169.8|solute carrier family 38, member 1
mm10_v2_chr13_-_9764865_9764941	0.733844	Sox2	ENSMUST00000128658.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr1_+_180641330_180641374	0.732501	Sox2	ENSMUST00000085804.5|Lin9|ENSMUSG00000058729.7|lin-9 homolog (C. elegans)
mm10_v2_chr12_+_38781093_38781129	0.731747	Sox2	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr1_+_133045984_133046082	0.730883	Sox2	ENSMUST00000077730.5|Pik3c2b|ENSMUSG00000026447.10|phosphoinositide-3-kinase, class 2, beta polypeptide
mm10_v2_chr7_+_101969796_101969843	0.730557	Sox2	ENSMUST00000084852.5|Numa1|ENSMUSG00000066306.6|nuclear mitotic apparatus protein 1
mm10_v2_chr17_-_29007925_29007962	0.730361	Sox2	ENSMUST00000009138.5|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38 	ENSMUST00000119274.1|Stk38|ENSMUSG00000024006.10|serine/threonine kinase 38
mm10_v2_chr16_+_17233560_17233664	0.729387	Sox2	ENSMUST00000090190.5|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2 	ENSMUST00000115698.2|Hic2|ENSMUSG00000050240.8|hypermethylated in cancer 2
mm10_v2_chr4_-_141599835_141600032	0.725074	Sox2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chr1_+_153749496_153749523	0.724671	Sox2	ENSMUST00000182722.1|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr11_-_19018956_19018973	0.722509	Sox2	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr15_-_103215285_103215366	0.722471	Sox2	ENSMUST00000122182.1|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000108813.3|Cbx5|ENSMUSG00000009575.8|chromobox 5 	ENSMUST00000127191.1|Cbx5|ENSMUSG00000009575.8|chromobox 5
mm10_v2_chr13_+_51100810_51100933	0.719158	Sox2	ENSMUST00000095797.5|Spin1|ENSMUSG00000021395.10|spindlin 1
mm10_v2_chr11_+_24076529_24076563	0.718502	Sox2	ENSMUST00000148087.1|Gm12063|ENSMUSG00000085167.1|predicted gene 12063
mm10_v2_chr15_-_99705490_99705490	0.714046	Sox2	ENSMUST00000163472.2|Gm17349|ENSMUSG00000091604.2|predicted gene, 17349
mm10_v2_chr7_-_116038734_116038750	0.71157	Sox2	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr10_+_69925800_69925824	0.71152	Sox2	ENSMUST00000182029.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr12_+_76081645_76081661	0.711434	Sox2	ENSMUST00000154509.1|Syne2|ENSMUSG00000063450.8|spectrin repeat containing, nuclear envelope 2
mm10_v2_chr5_+_117976761_117976803	0.707875	Sox2	ENSMUST00000035579.6|Fbxo21|ENSMUSG00000032898.6|F-box protein 21
mm10_v2_chr15_-_84557776_84557875	0.707601	Sox2	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr3_-_116968969_116969004	0.70579	Sox2	ENSMUST00000143611.1|Palmd|ENSMUSG00000033377.8|palmdelphin 	ENSMUST00000040097.7|Palmd|ENSMUSG00000033377.8|palmdelphin
mm10_v2_chr18_+_23753708_23753725	0.704636	Sox2	ENSMUST00000115830.1|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr5_-_147076482_147076586	0.703574	Sox2	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr9_-_105495037_105495117	0.702693	Sox2	ENSMUST00000176190.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000163879.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000112558.2|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000176390.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr11_+_3649494_3649494	0.702081	Sox2	ENSMUST00000093389.2|Morc2a|ENSMUSG00000034543.8|microrchidia 2A
mm10_v2_chr2_-_156111954_156111978	0.70201	Sox2	ENSMUST00000059647.5|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000109604.2|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000142960.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000138068.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12 	ENSMUST00000136296.2|Cpne1|ENSMUSG00000074643.6|copine I 	ENSMUST00000128499.1|Rbm12|ENSMUSG00000089824.4|RNA binding motif protein 12
mm10_v2_chr5_+_48242549_48242549	0.701495	Sox2	ENSMUST00000172493.1|Slit2|ENSMUSG00000031558.9|slit homolog 2 (Drosophila)
mm10_v2_chr15_-_100403243_100403270	0.700019	Sox2	ENSMUST00000124324.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr7_+_144175513_144175529	0.699589	Sox2	ENSMUST00000105900.1|Shank2|ENSMUSG00000037541.13|SH3/ankyrin domain gene 2
mm10_v2_chr14_-_55092277_55092324	0.699311	Sox2	ENSMUST00000036328.8|Zfhx2|ENSMUSG00000040721.8|zinc finger homeobox 2
mm10_v2_chr11_+_98203314_98203335	0.698787	Sox2	ENSMUST00000003203.7|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12 	ENSMUST00000107538.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr11_-_76763550_76763582	0.697806	Sox2	ENSMUST00000010536.8|Gosr1|ENSMUSG00000010392.8|golgi SNAP receptor complex member 1
mm10_v2_chr3_-_154330543_154330576	0.696291	Sox2	ENSMUST00000184966.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8 	ENSMUST00000177846.2|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr1_-_168431695_168431750	0.695605	Sox2	ENSMUST00000176790.1|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chr9_+_110132015_110132102	0.690543	Sox2	ENSMUST00000088716.5|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111969.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000035057.7|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111966.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 	ENSMUST00000111968.1|Smarcc1|ENSMUSG00000032481.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
mm10_v2_chr7_+_12881165_12881204	0.685342	Sox2	ENSMUST00000144578.1|Zfp128|ENSMUSG00000060397.6|zinc finger protein 128
mm10_v2_chr15_-_102722150_102722178	0.684222	Sox2	ENSMUST00000023818.3|Calcoco1|ENSMUSG00000023055.3|calcium binding and coiled coil domain 1
mm10_v2_chr5_-_139484475_139484549	0.683637	Sox2	ENSMUST00000110851.1|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A 	ENSMUST00000079996.6|Zfand2a|ENSMUSG00000053581.7|zinc finger, AN1-type domain 2A
mm10_v2_chr7_+_141949846_141949868	0.680934	Sox2	ENSMUST00000172652.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr3_+_88621436_88621555	0.677293	Sox2	ENSMUST00000170653.2|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2 	ENSMUST00000177303.1|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr5_-_8367982_8368107	0.676404	Sox2	ENSMUST00000088761.4|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115386.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000050166.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000046838.7|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115388.2|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000088744.5|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22 	ENSMUST00000115385.1|Adam22|ENSMUSG00000040537.11|a disintegrin and metallopeptidase domain 22
mm10_v2_chr18_+_76241892_76242046	0.676395	Sox2	ENSMUST00000171256.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr7_+_28180272_28180316	0.675315	Sox2	ENSMUST00000173223.1|Dyrk1b|ENSMUSG00000002409.11|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b
mm10_v2_chr13_+_56703504_56703668	0.674806	Sox2	ENSMUST00000109874.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr1_+_171250416_171250433	0.674408	Sox2	ENSMUST00000111315.1|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 	ENSMUST00000006570.5|Adamts4|ENSMUSG00000006403.6|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4
mm10_v2_chr12_+_40446050_40446099	0.672354	Sox2	ENSMUST00000037488.6|Dock4|ENSMUSG00000035954.9|dedicator of cytokinesis 4
mm10_v2_chr7_-_127393604_127393663	0.670143	Sox2	ENSMUST00000165495.1|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene 	ENSMUST00000106303.2|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene 	ENSMUST00000074249.6|E430018J23Rik|ENSMUSG00000078580.3|RIKEN cDNA E430018J23 gene
mm10_v2_chr18_-_88927447_88927481	0.669731	Sox2	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr3_+_96830069_96830115	0.669644	Sox2	ENSMUST00000058865.7|Pdzk1|ENSMUSG00000038298.8|PDZ domain containing 1
mm10_v2_chr4_-_126468580_126468653	0.668781	Sox2	ENSMUST00000097888.3|Ago1|ENSMUSG00000041530.10|argonaute RISC catalytic subunit 1
mm10_v2_chr2_-_131352857_131352889	0.66728	Sox2	ENSMUST00000059372.4|Rnf24|ENSMUSG00000048911.9|ring finger protein 24
mm10_v2_chr18_-_61536522_61536558	0.665921	Sox2	ENSMUST00000171629.1|Arhgef37|ENSMUSG00000045094.7|Rho guanine nucleotide exchange factor (GEF) 37
mm10_v2_chr4_+_48585276_48585365	0.665903	Sox2	ENSMUST00000123476.1|Tmeff1|ENSMUSG00000028347.8|transmembrane protein with EGF-like and two follistatin-like domains 1
mm10_v2_chr5_-_122779278_122779434	0.66389	Sox2	ENSMUST00000111668.3|Camkk2|ENSMUSG00000029471.9|calcium/calmodulin-dependent protein kinase kinase 2, beta
mm10_v2_chr17_+_43016536_43016591	0.662949	Sox2	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr10_+_69925954_69926133	0.661596	Sox2	ENSMUST00000181974.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182795.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000182437.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr2_+_68861433_68861510	0.659648	Sox2	ENSMUST00000028426.2|Cers6|ENSMUSG00000027035.4|ceramide synthase 6
mm10_v2_chr2_-_6721606_6721629	0.659044	Sox2	ENSMUST00000150624.2|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000142941.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000100429.4|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2 	ENSMUST00000182879.1|Celf2|ENSMUSG00000002107.12|CUGBP, Elav-like family member 2
mm10_v2_chr4_-_130574150_130574237	0.658567	Sox2	ENSMUST00000105993.3|Nkain1|ENSMUSG00000078532.3|Na+/K+ transporting ATPase interacting 1
mm10_v2_chr11_-_19018714_19018828	0.657896	Sox2	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr16_-_30550560_30550594	0.657087	Sox2	ENSMUST00000140402.1|Tmem44|ENSMUSG00000022537.11|transmembrane protein 44
mm10_v2_chr10_-_63244135_63244170	0.65505	Sox2	ENSMUST00000054837.3|1700120B22Rik|ENSMUSG00000045391.3|RIKEN cDNA 1700120B22 gene
mm10_v2_chr9_+_21616230_21616281	0.653508	Sox2	ENSMUST00000174008.1|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr9_+_21616166_21616177	0.64891	Sox2	ENSMUST00000034707.8|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 	ENSMUST00000098948.3|Smarca4|ENSMUSG00000032187.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
mm10_v2_chr10_+_69925484_69925532	0.648734	Sox2	ENSMUST00000182692.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000092433.5|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr6_-_87590701_87590748	0.647563	Sox2	ENSMUST00000050887.7|Prokr1|ENSMUSG00000049409.7|prokineticin receptor 1
mm10_v2_chr5_-_114380459_114380487	0.645254	Sox2	ENSMUST00000001125.5|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chrX_+_93675088_93675161	0.644566	Sox2	ENSMUST00000045898.3|Pcyt1b|ENSMUSG00000035246.10|phosphate cytidylyltransferase 1, choline, beta isoform
mm10_v2_chr15_+_82274935_82275034	0.641351	Sox2	ENSMUST00000023095.6|Sept3|ENSMUSG00000022456.9|septin 3
mm10_v2_chr7_-_128740471_128740525	0.64023	Sox2	ENSMUST00000119081.1|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein 	ENSMUST00000057557.7|Mcmbp|ENSMUSG00000048170.8|MCM (minichromosome maintenance deficient) binding protein
mm10_v2_chr10_+_80755196_80755239	0.639003	Sox2	ENSMUST00000105336.2|Dot1l|ENSMUSG00000061589.8|DOT1-like, histone H3 methyltransferase (S. cerevisiae)
mm10_v2_chr18_+_35965036_35965087	0.637951	Sox2	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr7_+_80860909_80860972	0.636846	Sox2	ENSMUST00000132163.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2 	ENSMUST00000147125.1|Zscan2|ENSMUSG00000038797.7|zinc finger and SCAN domain containing 2
mm10_v2_chr11_-_70220969_70221027	0.63681	Sox2	ENSMUST00000060010.2|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr11_+_62077018_62077101	0.634362	Sox2	ENSMUST00000092415.5|Specc1|ENSMUSG00000042331.7|sperm antigen with calponin homology and coiled-coil domains 1
mm10_v2_chr11_+_97415527_97415538	0.633528	Sox2	ENSMUST00000121799.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr12_-_26415256_26415303	0.633303	Sox2	ENSMUST00000020971.6|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A 	ENSMUST00000062149.4|Rnf144a|ENSMUSG00000020642.6|ring finger protein 144A
mm10_v2_chr8_-_36249292_36249516	0.632127	Sox2	ENSMUST00000065297.5|Lonrf1|ENSMUSG00000039633.6|LON peptidase N-terminal domain and ring finger 1
mm10_v2_chr15_+_27466647_27466696	0.631848	Sox2	ENSMUST00000022875.6|Ank|ENSMUSG00000022265.6|progressive ankylosis
mm10_v2_chr11_-_78497458_78497539	0.630935	Sox2	ENSMUST00000108287.3|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chrX_-_59568068_59568094	0.629363	Sox2	ENSMUST00000119833.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13 	ENSMUST00000131319.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr2_+_180042496_180042562	0.628573	Sox2	ENSMUST00000041126.8|Ss18l1|ENSMUSG00000039086.9|synovial sarcoma translocation gene on chromosome 18-like 1
mm10_v2_chr4_+_102254739_102254761	0.625548	Sox2	ENSMUST00000106907.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr17_-_48409729_48409906	0.625478	Sox2	ENSMUST00000160319.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000159535.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000078800.6|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000046719.7|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha 	ENSMUST00000162460.1|Nfya|ENSMUSG00000023994.7|nuclear transcription factor-Y alpha
mm10_v2_chr2_-_121806988_121807018	0.624062	Sox2	ENSMUST00000110592.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr3_+_98382538_98382553	0.622626	Sox2	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr11_-_8664499_8664551	0.619645	Sox2	ENSMUST00000020695.6|Tns3|ENSMUSG00000020422.7|tensin 3
mm10_v2_chr11_+_116918844_116918888	0.617961	Sox2	ENSMUST00000103027.3|Mgat5b|ENSMUSG00000043857.10|mannoside acetylglucosaminyltransferase 5, isoenzyme B
mm10_v2_chr1_-_12991109_12991177	0.614071	Sox2	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr13_-_54749627_54749697	0.609152	Sox2	ENSMUST00000099506.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr11_-_78497734_78497793	0.607723	Sox2	ENSMUST00000061174.6|Sarm1|ENSMUSG00000050132.7|sterile alpha and HEAT/Armadillo motif containing 1
mm10_v2_chr5_+_138116903_138117041	0.605218	Sox2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chrX_+_47912387_47912442	0.605144	Sox2	ENSMUST00000001202.8|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe 	ENSMUST00000115020.1|Ocrl|ENSMUSG00000001173.9|oculocerebrorenal syndrome of Lowe
mm10_v2_chr7_-_105787567_105787654	0.604905	Sox2	ENSMUST00000144189.1|Dchs1|ENSMUSG00000036862.8|dachsous 1 (Drosophila)
mm10_v2_chr5_-_22344690_22344710	0.602254	Sox2	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr10_-_94035705_94035769	0.602214	Sox2	ENSMUST00000118077.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000118205.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000047711.6|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr8_+_61224162_61224174	0.599578	Sox2	ENSMUST00000034060.5|Sh3rf1|ENSMUSG00000031642.8|SH3 domain containing ring finger 1
mm10_v2_chr9_-_110117379_110117445	0.59827	Sox2	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr10_+_45067167_45067279	0.597662	Sox2	ENSMUST00000099858.2|Prep|ENSMUSG00000019849.10|prolyl endopeptidase
mm10_v2_chr15_-_75905349_75905388	0.595299	Sox2	ENSMUST00000127550.1|Eef1d|ENSMUSG00000055762.9|eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
mm10_v2_chr5_+_34549595_34549688	0.595123	Sox2	ENSMUST00000179943.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr2_-_119787504_119787537	0.593344	Sox2	ENSMUST00000110793.1|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000099529.2|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1 	ENSMUST00000048493.5|Rpap1|ENSMUSG00000034032.9|RNA polymerase II associated protein 1
mm10_v2_chr18_-_68300329_68300336	0.59286	Sox2	ENSMUST00000042852.6|Fam210a|ENSMUSG00000038121.6|family with sequence similarity 210, member A
mm10_v2_chr11_-_3774706_3774738	0.592531	Sox2	ENSMUST00000155197.1|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr10_+_42860348_42860377	0.591808	Sox2	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr19_-_3686549_3686586	0.591717	Sox2	ENSMUST00000025856.10|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5 	ENSMUST00000176867.1|Lrp5|ENSMUSG00000024913.10|low density lipoprotein receptor-related protein 5
mm10_v2_chr2_-_18048784_18048822	0.590255	Sox2	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr15_-_96699698_96699717	0.589449	Sox2	ENSMUST00000023099.6|Slc38a2|ENSMUSG00000022462.6|solute carrier family 38, member 2
mm10_v2_chr10_-_57532416_57532487	0.588512	Sox2	ENSMUST00000169122.1|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr1_-_36558214_36558266	0.587187	Sox2	ENSMUST00000154493.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr8_+_36094828_36094868	0.586333	Sox2	ENSMUST00000110492.1|D8Ertd82e|ENSMUSG00000050271.6|DNA segment, Chr 8, ERATO Doi 82, expressed
mm10_v2_chr13_-_29984219_29984353	0.585096	Sox2	ENSMUST00000146092.1|E2f3|ENSMUSG00000016477.11|E2F transcription factor 3
mm10_v2_chr2_+_124610573_124610613	0.583668	Sox2	ENSMUST00000103239.3|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 	ENSMUST00000103240.2|Sema6d|ENSMUSG00000027200.11|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
mm10_v2_chr1_-_136346074_136346145	0.582688	Sox2	ENSMUST00000048309.6|Camsap2|ENSMUSG00000041570.9|calmodulin regulated spectrin-associated protein family, member 2
mm10_v2_chr5_+_114568016_114568016	0.582095	Sox2	ENSMUST00000043650.7|Fam222a|ENSMUSG00000041930.7|family with sequence similarity 222, member A
mm10_v2_chr5_+_138085083_138085147	0.582048	Sox2	ENSMUST00000019660.4|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000066617.5|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1 	ENSMUST00000110963.1|Zkscan1|ENSMUSG00000029729.6|zinc finger with KRAB and SCAN domains 1
mm10_v2_chr9_-_110117303_110117353	0.579297	Sox2	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr11_-_90638062_90638100	0.577332	Sox2	ENSMUST00000020858.7|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107875.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000107872.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4 	ENSMUST00000143203.1|Stxbp4|ENSMUSG00000020546.8|syntaxin binding protein 4
mm10_v2_chr11_-_106920359_106920643	0.57614	Sox2	ENSMUST00000167787.1|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2 	ENSMUST00000092517.2|Smurf2|ENSMUSG00000018363.10|SMAD specific E3 ubiquitin protein ligase 2
mm10_v2_chr9_+_120929216_120929251	0.573717	Sox2	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr15_-_79254737_79254764	0.572462	Sox2	ENSMUST00000039752.3|Slc16a8|ENSMUSG00000032988.3|solute carrier family 16 (monocarboxylic acid transporters), member 8
mm10_v2_chr16_+_11066292_11066381	0.572097	Sox2	ENSMUST00000089011.4|Snn|ENSMUSG00000037972.6|stannin
mm10_v2_chr15_-_95528228_95528266	0.571348	Sox2	ENSMUST00000075275.2|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr7_+_46397648_46397783	0.569851	Sox2	ENSMUST00000160433.1|Kcnc1|ENSMUSG00000058975.6|potassium voltage gated channel, Shaw-related subfamily, member 1
mm10_v2_chr4_+_102421518_102421573	0.569596	Sox2	ENSMUST00000106904.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr1_-_6215292_6215292	0.5688	Sox2	ENSMUST00000097832.1|4732440D04Rik|ENSMUSG00000073741.1|RIKEN cDNA 4732440D04 gene
mm10_v2_chr9_+_110052016_110052111	0.567691	Sox2	ENSMUST00000164930.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4 	ENSMUST00000163979.1|Map4|ENSMUSG00000032479.9|microtubule-associated protein 4
mm10_v2_chr4_-_99120898_99120935	0.566361	Sox2	ENSMUST00000075836.5|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr17_-_12769605_12769700	0.564725	Sox2	ENSMUST00000024599.7|Igf2r|ENSMUSG00000023830.7|insulin-like growth factor 2 receptor
mm10_v2_chr14_+_65970610_65970621	0.56394	Sox2	ENSMUST00000127387.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr5_-_34187670_34187749	0.563504	Sox2	ENSMUST00000042701.6|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4 	ENSMUST00000119171.1|Mxd4|ENSMUSG00000037235.7|Max dimerization protein 4
mm10_v2_chr5_-_140649018_140649052	0.563489	Sox2	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr10_-_125308809_125308825	0.562728	Sox2	ENSMUST00000105257.2|Slc16a7|ENSMUSG00000020102.8|solute carrier family 16 (monocarboxylic acid transporters), member 7
mm10_v2_chr11_-_120990871_120991037	0.562107	Sox2	ENSMUST00000154483.1|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr5_+_37245792_37245883	0.561646	Sox2	ENSMUST00000031004.7|Crmp1|ENSMUSG00000029121.9|collapsin response mediator protein 1
mm10_v2_chr13_+_65278810_65278838	0.561122	Sox2	ENSMUST00000126879.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369 	ENSMUST00000130799.1|Zfp369|ENSMUSG00000021514.11|zinc finger protein 369
mm10_v2_chr18_+_52767994_52768149	0.559731	Sox2	ENSMUST00000025413.7|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000163742.2|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin) 	ENSMUST00000178011.1|Sncaip|ENSMUSG00000024534.9|synuclein, alpha interacting protein (synphilin)
mm10_v2_chr2_-_165034821_165034867	0.557016	Sox2	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr9_-_58313189_58313212	0.555276	Sox2	ENSMUST00000061799.8|Loxl1|ENSMUSG00000032334.9|lysyl oxidase-like 1
mm10_v2_chr16_-_20426375_20426394	0.555242	Sox2	ENSMUST00000079158.6|Abcc5|ENSMUSG00000022822.9|ATP-binding cassette, sub-family C (CFTR/MRP), member 5
mm10_v2_chr3_-_54915867_54915887	0.554372	Sox2	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr17_+_32506446_32506473	0.553492	Sox2	ENSMUST00000165999.1|Cyp4f17|ENSMUSG00000091586.1|cytochrome P450, family 4, subfamily f, polypeptide 17
mm10_v2_chr5_+_30853796_30853801	0.552616	Sox2	ENSMUST00000126284.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr9_+_3335470_3335501	0.551983	Sox2	ENSMUST00000053407.5|Alkbh8|ENSMUSG00000025899.7|alkB, alkylation repair homolog 8 (E. coli)
mm10_v2_chr12_+_3365108_3365142	0.551221	Sox2	ENSMUST00000020999.5|Kif3c|ENSMUSG00000020668.9|kinesin family member 3C
mm10_v2_chr9_+_90163057_90163101	0.550547	Sox2	ENSMUST00000113059.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 	ENSMUST00000167122.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr12_+_73997749_73997817	0.550389	Sox2	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr4_-_12087912_12088011	0.549574	Sox2	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chr11_+_49794157_49794187	0.549035	Sox2	ENSMUST00000020629.4|Gfpt2|ENSMUSG00000020363.6|glutamine fructose-6-phosphate transaminase 2
mm10_v2_chr11_+_80383309_80383336	0.548076	Sox2	ENSMUST00000108216.1|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr3_+_88532314_88532396	0.54722	Sox2	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr13_-_54565299_54565362	0.546156	Sox2	ENSMUST00000153065.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000126295.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000143144.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene 	ENSMUST00000132136.1|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chr1_-_79761752_79761774	0.545974	Sox2	ENSMUST00000113512.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113513.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113515.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113514.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113510.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000113511.1|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1 	ENSMUST00000048820.7|Wdfy1|ENSMUSG00000073643.5|WD repeat and FYVE domain containing 1
mm10_v2_chr2_+_3713449_3713474	0.545884	Sox2	ENSMUST00000027965.4|Fam107b|ENSMUSG00000026655.8|family with sequence similarity 107, member B
mm10_v2_chr14_+_80000292_80000309	0.545711	Sox2	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chrX_+_159708593_159708612	0.544886	Sox2	ENSMUST00000080394.6|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr19_-_4943049_4943127	0.543998	Sox2	ENSMUST00000133254.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000120475.1|Peli3|ENSMUSG00000024901.8|pellino 3 	ENSMUST00000025834.7|Peli3|ENSMUSG00000024901.8|pellino 3
mm10_v2_chr9_+_118478851_118478866	0.543556	Sox2	ENSMUST00000150633.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr1_-_173367638_173367695	0.543049	Sox2	ENSMUST00000005470.4|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3 	ENSMUST00000111220.1|Cadm3|ENSMUSG00000005338.7|cell adhesion molecule 3
mm10_v2_chr11_+_104231390_104231453	0.542181	Sox2	ENSMUST00000106992.3|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr16_-_90284412_90284498	0.541523	Sox2	ENSMUST00000039280.7|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr6_-_136171722_136171849	0.541057	Sox2	ENSMUST00000053880.6|Grin2b|ENSMUSG00000030209.8|glutamate receptor, ionotropic, NMDA2B (epsilon 2)
mm10_v2_chr17_+_35001282_35001347	0.537191	Sox2	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr7_+_130692532_130692575	0.536412	Sox2	ENSMUST00000033141.6|Tacc2|ENSMUSG00000030852.9|transforming, acidic coiled-coil containing protein 2
mm10_v2_chr2_+_167932327_167932379	0.53619	Sox2	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr1_-_134235420_134235443	0.534816	Sox2	ENSMUST00000038191.6|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor 	ENSMUST00000086465.4|Adora1|ENSMUSG00000042429.7|adenosine A1 receptor
mm10_v2_chr11_-_107470699_107470726	0.534427	Sox2	ENSMUST00000103064.3|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr1_-_34843050_34843065	0.533093	Sox2	ENSMUST00000170092.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000167518.1|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B 	ENSMUST00000047534.5|Fam168b|ENSMUSG00000037503.6|family with sequence similarity 168, member B
mm10_v2_chr5_-_142817387_142817420	0.532759	Sox2	ENSMUST00000036253.6|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr15_-_39943689_39943788	0.53145	Sox2	ENSMUST00000022916.5|Lrp12|ENSMUSG00000022305.6|low density lipoprotein-related protein 12
mm10_v2_chr11_-_70220776_70220790	0.530194	Sox2	ENSMUST00000141290.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr11_-_116168138_116168205	0.529885	Sox2	ENSMUST00000139020.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000103031.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1 	ENSMUST00000124828.1|Fbf1|ENSMUSG00000020776.12|Fas (TNFRSF6) binding factor 1
mm10_v2_chr13_+_93304940_93305278	0.529272	Sox2	ENSMUST00000109497.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109498.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000060490.4|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109492.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109496.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila) 	ENSMUST00000109495.1|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr17_-_57059795_57059863	0.529144	Sox2	ENSMUST00000040280.7|Slc25a23|ENSMUSG00000046329.8|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23
mm10_v2_chr5_-_98030727_98030765	0.523233	Sox2	ENSMUST00000031281.9|Antxr2|ENSMUSG00000029338.9|anthrax toxin receptor 2
mm10_v2_chr9_-_60838200_60838200	0.519993	Sox2	ENSMUST00000063858.7|Gm9869|ENSMUSG00000052143.7|predicted gene 9869
mm10_v2_chr16_-_52296924_52296924	0.519625	Sox2	ENSMUST00000167115.1|Alcam|ENSMUSG00000022636.7|activated leukocyte cell adhesion molecule
mm10_v2_chr10_+_69925766_69925786	0.519514	Sox2	ENSMUST00000182269.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183261.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial 	ENSMUST00000183074.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr16_-_89818338_89818356	0.519219	Sox2	ENSMUST00000164263.2|Tiam1|ENSMUSG00000002489.9|T cell lymphoma invasion and metastasis 1
mm10_v2_chr18_+_37355271_37355271	0.515327	Sox2	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr7_+_27195781_27195885	0.515024	Sox2	ENSMUST00000108379.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978 	ENSMUST00000179391.1|BC024978|ENSMUSG00000078786.3|cDNA sequence BC024978
mm10_v2_chr15_+_86058727_86058793	0.513158	Sox2	ENSMUST00000138134.1|Gramd4|ENSMUSG00000035900.12|GRAM domain containing 4
mm10_v2_chr10_-_94035789_94035817	0.511681	Sox2	ENSMUST00000123201.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein 	ENSMUST00000119818.1|Vezt|ENSMUSG00000036099.10|vezatin, adherens junctions transmembrane protein
mm10_v2_chr4_+_138217120_138217203	0.511331	Sox2	ENSMUST00000137851.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3 	ENSMUST00000165861.1|Hp1bp3|ENSMUSG00000028759.7|heterochromatin protein 1, binding protein 3
mm10_v2_chr18_+_37421418_37421455	0.510154	Sox2	ENSMUST00000053073.4|Pcdhb11|ENSMUSG00000051486.4|protocadherin beta 11
mm10_v2_chr5_+_66968416_66968447	0.510139	Sox2	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr8_+_71908595_71908657	0.509821	Sox2	ENSMUST00000110002.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882 	ENSMUST00000131544.1|Zfp617|ENSMUSG00000066880.9|zinc finger protein 617 	ENSMUST00000125802.1|Zfp882|ENSMUSG00000089857.3|zinc finger protein 882
mm10_v2_chr14_-_70766598_70766644	0.509788	Sox2	ENSMUST00000167242.1|Xpo7|ENSMUSG00000022100.7|exportin 7 	ENSMUST00000022696.6|Xpo7|ENSMUSG00000022100.7|exportin 7
mm10_v2_chr8_-_109251698_109251728	0.509386	Sox2	ENSMUST00000079189.3|4922502B01Rik|ENSMUSG00000057387.3|RIKEN cDNA 4922502B01 gene
mm10_v2_chr10_-_32890462_32890462	0.508595	Sox2	ENSMUST00000092602.1|Nkain2|ENSMUSG00000069670.1|Na+/K+ transporting ATPase interacting 2
mm10_v2_chr10_+_40349265_40349387	0.506813	Sox2	ENSMUST00000044672.4|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19 	ENSMUST00000095743.2|Cdk19|ENSMUSG00000038481.6|cyclin-dependent kinase 19
mm10_v2_chr16_+_94370618_94370784	0.505087	Sox2	ENSMUST00000117648.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000147352.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150346.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000155692.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000153988.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000141856.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000152117.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000150097.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000122895.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3 	ENSMUST00000151770.1|Ttc3|ENSMUSG00000040785.11|tetratricopeptide repeat domain 3
mm10_v2_chr14_-_54781886_54781925	0.502669	Sox2	ENSMUST00000022787.6|Slc7a8|ENSMUSG00000022180.6|solute carrier family 7 (cationic amino acid transporter, y+ system), member 8
mm10_v2_chr9_-_59486323_59486415	0.502237	Sox2	ENSMUST00000165322.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr11_+_69846610_69846659	0.502179	Sox2	ENSMUST00000152566.1|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3 	ENSMUST00000108633.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr9_-_102354685_102354699	0.501881	Sox2	ENSMUST00000035129.7|Ephb1|ENSMUSG00000032537.8|Eph receptor B1 	ENSMUST00000085169.5|Ephb1|ENSMUSG00000032537.8|Eph receptor B1
mm10_v2_chr14_+_52197502_52197518	0.500724	Sox2	ENSMUST00000180857.1|Gm26590|ENSMUSG00000097533.1|predicted gene, 26590
mm10_v2_chr2_+_153241502_153241603	0.496754	Sox2	ENSMUST00000049863.5|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000099192.3|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1 	ENSMUST00000109794.1|Pofut1|ENSMUSG00000046020.7|protein O-fucosyltransferase 1
mm10_v2_chr13_+_93304799_93304935	0.496643	Sox2	ENSMUST00000080127.5|Homer1|ENSMUSG00000007617.11|homer homolog 1 (Drosophila)
mm10_v2_chr2_+_27009936_27010082	0.496019	Sox2	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr13_-_77131276_77131329	0.495385	Sox2	ENSMUST00000159300.1|Ankrd32|ENSMUSG00000021597.10|ankyrin repeat domain 32
mm10_v2_chr6_+_77242715_77242729	0.494674	Sox2	ENSMUST00000161677.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr2_-_160367057_160367073	0.493603	Sox2	ENSMUST00000099126.3|Mafb|ENSMUSG00000074622.3|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
mm10_v2_chr11_-_62731865_62731910	0.493059	Sox2	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr7_-_37773555_37773641	0.492255	Sox2	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr10_+_127739516_127739592	0.492132	Sox2	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr6_+_51432678_51432784	0.491619	Sox2	ENSMUST00000160133.1|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr11_-_98729374_98729435	0.49091	Sox2	ENSMUST00000126565.1|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000100500.2|Med24|ENSMUSG00000017210.8|mediator complex subunit 24 	ENSMUST00000017354.6|Med24|ENSMUSG00000017210.8|mediator complex subunit 24
mm10_v2_chr9_-_44735189_44735213	0.490603	Sox2	ENSMUST00000034611.8|Phldb1|ENSMUSG00000048537.9|pleckstrin homology-like domain, family B, member 1
mm10_v2_chr7_-_109960385_109960433	0.488367	Sox2	ENSMUST00000106722.1|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr7_+_12834743_12834811	0.487668	Sox2	ENSMUST00000004614.8|Zfp110|ENSMUSG00000058638.7|zinc finger protein 110
mm10_v2_chr17_-_35910032_35910076	0.487666	Sox2	ENSMUST00000141662.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000056034.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000077494.6|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000149277.1|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1 	ENSMUST00000061052.5|Atat1|ENSMUSG00000024426.11|alpha tubulin acetyltransferase 1
mm10_v2_chr2_-_152831112_152831326	0.487068	Sox2	ENSMUST00000128172.1|Bcl2l1|ENSMUSG00000007659.12|BCL2-like 1
mm10_v2_chr10_+_75060885_75060901	0.486227	Sox2	ENSMUST00000164107.1|Bcr|ENSMUSG00000009681.9|breakpoint cluster region
mm10_v2_chr1_+_6730135_6730176	0.485881	Sox2	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr18_-_6516089_6516108	0.485592	Sox2	ENSMUST00000115870.2|Epc1|ENSMUSG00000024240.7|enhancer of polycomb homolog 1 (Drosophila)
mm10_v2_chr10_-_89257578_89257622	0.485427	Sox2	ENSMUST00000182341.1|Ano4|ENSMUSG00000035189.10|anoctamin 4 	ENSMUST00000182613.1|Ano4|ENSMUSG00000035189.10|anoctamin 4
mm10_v2_chr11_-_70220794_70220832	0.484922	Sox2	ENSMUST00000159867.1|Slc16a13|ENSMUSG00000044367.6|solute carrier family 16 (monocarboxylic acid transporters), member 13
mm10_v2_chr4_+_137862237_137862249	0.483898	Sox2	ENSMUST00000102518.3|Ece1|ENSMUSG00000057530.8|endothelin converting enzyme 1
mm10_v2_chr2_-_114052804_114052887	0.482367	Sox2	ENSMUST00000090269.6|Actc1|ENSMUSG00000068614.7|actin, alpha, cardiac muscle 1
mm10_v2_chr15_-_8710734_8710764	0.480186	Sox2	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr18_+_34777008_34777075	0.479374	Sox2	ENSMUST00000043775.7|Kdm3b|ENSMUSG00000038773.10|KDM3B lysine (K)-specific demethylase 3B
mm10_v2_chr6_+_77242644_77242697	0.478546	Sox2	ENSMUST00000159616.1|Lrrtm1|ENSMUSG00000060780.2|leucine rich repeat transmembrane neuronal 1
mm10_v2_chr5_+_143817786_143817818	0.478476	Sox2	ENSMUST00000100487.4|Eif2ak1|ENSMUSG00000029613.9|eukaryotic translation initiation factor 2 alpha kinase 1
mm10_v2_chr18_+_35965088_35965110	0.476542	Sox2	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr14_+_65971049_65971074	0.476307	Sox2	ENSMUST00000128539.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr1_+_182409162_182409184	0.474497	Sox2	ENSMUST00000117245.1|Trp53bp2|ENSMUSG00000026510.9|transformation related protein 53 binding protein 2
mm10_v2_chr6_-_99028874_99028942	0.471239	Sox2	ENSMUST00000154163.2|Foxp1|ENSMUSG00000030067.11|forkhead box P1
mm10_v2_chr10_+_17723220_17723229	0.469733	Sox2	ENSMUST00000038107.7|Cited2|ENSMUSG00000039910.9|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm10_v2_chr15_+_80173642_80173721	0.468889	Sox2	ENSMUST00000044970.6|Mgat3|ENSMUSG00000042428.6|mannoside acetylglucosaminyltransferase 3
mm10_v2_chr9_-_107710475_107710475	0.466971	Sox2	ENSMUST00000080560.3|Sema3f|ENSMUSG00000034684.7|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
mm10_v2_chr9_+_90162978_90163037	0.466937	Sox2	ENSMUST00000113060.1|Adamts7|ENSMUSG00000032363.9|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7
mm10_v2_chr9_-_108578657_108578675	0.466836	Sox2	ENSMUST00000068700.5|Wdr6|ENSMUSG00000066357.5|WD repeat domain 6
mm10_v2_chr12_+_80790532_80790574	0.465727	Sox2	ENSMUST00000068519.5|4933426M11Rik|ENSMUSG00000021133.8|RIKEN cDNA 4933426M11 gene
mm10_v2_chr17_-_35704574_35704632	0.465587	Sox2	ENSMUST00000117301.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1 	ENSMUST00000134995.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr9_-_45906369_45906437	0.464721	Sox2	ENSMUST00000161187.1|Rnf214|ENSMUSG00000042790.9|ring finger protein 214
mm10_v2_chr13_-_104109576_104109619	0.46381	Sox2	ENSMUST00000109315.3|Nln|ENSMUSG00000021710.10|neurolysin (metallopeptidase M3 family)
mm10_v2_chr10_-_127751707_127751737	0.463498	Sox2	ENSMUST00000079692.5|Gpr182|ENSMUSG00000058396.7|G protein-coupled receptor 182
mm10_v2_chr8_+_122376609_122376652	0.46211	Sox2	ENSMUST00000017622.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000093073.5|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18 	ENSMUST00000176699.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr17_+_37002610_37002670	0.461898	Sox2	ENSMUST00000173921.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57 	ENSMUST00000172580.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr11_-_118355496_118355506	0.460888	Sox2	ENSMUST00000017610.3|Timp2|ENSMUSG00000017466.3|tissue inhibitor of metalloproteinase 2
mm10_v2_chr7_-_25005895_25005937	0.46027	Sox2	ENSMUST00000102858.3|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide 	ENSMUST00000080882.6|Atp1a3|ENSMUSG00000040907.9|ATPase, Na+/K+ transporting, alpha 3 polypeptide
mm10_v2_chrX_-_143827391_143827414	0.459967	Sox2	ENSMUST00000087316.5|Capn6|ENSMUSG00000067276.5|calpain 6
mm10_v2_chr7_-_142095266_142095306	0.459836	Sox2	ENSMUST00000039926.3|Dusp8|ENSMUSG00000037887.5|dual specificity phosphatase 8
mm10_v2_chr5_-_112228934_112228975	0.459204	Sox2	ENSMUST00000181535.2|Miat|ENSMUSG00000097767.2|myocardial infarction associated transcript (non-protein coding)
mm10_v2_chr11_-_46312220_46312358	0.456909	Sox2	ENSMUST00000129474.1|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000093166.4|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2 	ENSMUST00000165599.2|Cyfip2|ENSMUSG00000020340.10|cytoplasmic FMR1 interacting protein 2
mm10_v2_chr7_-_109960461_109960477	0.455991	Sox2	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr3_-_154328634_154328663	0.455437	Sox2	ENSMUST00000167744.1|Lhx8|ENSMUSG00000096225.2|LIM homeobox protein 8
mm10_v2_chr11_-_50292302_50292363	0.45376	Sox2	ENSMUST00000059458.4|Maml1|ENSMUSG00000050567.10|mastermind like 1 (Drosophila)
mm10_v2_chr13_-_102906046_102906111	0.453496	Sox2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr1_+_15287259_15287259	0.452589	Sox2	ENSMUST00000175681.1|Kcnb2|ENSMUSG00000092083.3|potassium voltage gated channel, Shab-related subfamily, member 2
mm10_v2_chr14_+_65970804_65970903	0.4524	Sox2	ENSMUST00000138191.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr19_+_44293676_44293676	0.452391	Sox2	ENSMUST00000026221.5|Scd2|ENSMUSG00000025203.5|stearoyl-Coenzyme A desaturase 2
mm10_v2_chr9_-_107872403_107872422	0.452101	Sox2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr8_-_124663368_124663383	0.451556	Sox2	ENSMUST00000034464.6|2310022B05Rik|ENSMUSG00000031983.6|RIKEN cDNA 2310022B05 gene
mm10_v2_chr13_+_83504032_83504050	0.45125	Sox2	ENSMUST00000163888.1|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C 	ENSMUST00000005722.7|Mef2c|ENSMUSG00000005583.10|myocyte enhancer factor 2C
mm10_v2_chr9_+_74976096_74976177	0.451141	Sox2	ENSMUST00000081746.5|Fam214a|ENSMUSG00000034858.9|family with sequence similarity 214, member A
mm10_v2_chr1_-_153487639_153487662	0.450988	Sox2	ENSMUST00000042141.5|Dhx9|ENSMUSG00000042699.5|DEAH (Asp-Glu-Ala-His) box polypeptide 9
mm10_v2_chr11_-_68386974_68387012	0.449171	Sox2	ENSMUST00000135141.1|Ntn1|ENSMUSG00000020902.6|netrin 1
mm10_v2_chr8_-_40634750_40634775	0.447109	Sox2	ENSMUST00000173957.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr13_-_54687696_54687809	0.445008	Sox2	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr5_+_75574916_75575001	0.44312	Sox2	ENSMUST00000144270.1|Kit|ENSMUSG00000005672.6|kit oncogene 	ENSMUST00000005815.6|Kit|ENSMUSG00000005672.6|kit oncogene
mm10_v2_chr7_+_82175156_82175199	0.442745	Sox2	ENSMUST00000180243.1|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr5_-_142817654_142817668	0.442058	Sox2	ENSMUST00000151477.1|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr11_+_3895223_3895310	0.440651	Sox2	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr11_+_98203059_98203059	0.440625	Sox2	ENSMUST00000107539.1|Cdk12|ENSMUSG00000003119.8|cyclin-dependent kinase 12
mm10_v2_chr14_+_121035538_121035575	0.439839	Sox2	ENSMUST00000026635.7|Farp1|ENSMUSG00000025555.8|FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
mm10_v2_chr1_-_165934900_165935036	0.43938	Sox2	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr17_-_57087729_57087782	0.436981	Sox2	ENSMUST00000071135.5|Tubb4a|ENSMUSG00000062591.5|tubulin, beta 4A class IVA
mm10_v2_chr16_-_97851796_97851853	0.432723	Sox2	ENSMUST00000121584.1|Prdm15|ENSMUSG00000014039.11|PR domain containing 15
mm10_v2_chr10_+_90576872_90576992	0.429624	Sox2	ENSMUST00000182550.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000099364.5|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr16_-_23225334_23225368	0.429223	Sox2	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr1_+_180330470_180330493	0.428845	Sox2	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chrX_-_104201126_104201185	0.427861	Sox2	ENSMUST00000056502.6|C77370|ENSMUSG00000046449.9|expressed sequence C77370 	ENSMUST00000118314.1|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr4_+_116221633_116221661	0.42769	Sox2	ENSMUST00000030464.7|Pik3r3|ENSMUSG00000028698.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)
mm10_v2_chr10_+_106470281_106470367	0.425673	Sox2	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chr19_+_8953826_8953856	0.425068	Sox2	ENSMUST00000096239.5|Tut1|ENSMUSG00000071645.5|terminal uridylyl transferase 1, U6 snRNA-specific
mm10_v2_chr10_+_94550852_94550876	0.42369	Sox2	ENSMUST00000148910.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3 	ENSMUST00000117460.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr5_+_148265202_148265263	0.423154	Sox2	ENSMUST00000110515.2|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr8_+_70493156_70493167	0.422006	Sox2	ENSMUST00000008032.7|Crlf1|ENSMUSG00000007888.9|cytokine receptor-like factor 1
mm10_v2_chr8_+_25518783_25518801	0.420002	Sox2	ENSMUST00000084027.5|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000117179.2|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr2_-_64975762_64975795	0.416633	Sox2	ENSMUST00000156765.1|Grb14|ENSMUSG00000026888.8|growth factor receptor bound protein 14
mm10_v2_chr10_+_82859198_82859217	0.416149	Sox2	ENSMUST00000020484.6|Txnrd1|ENSMUSG00000020250.9|thioredoxin reductase 1
mm10_v2_chr1_-_93342734_93342803	0.413362	Sox2	ENSMUST00000027493.3|Pask|ENSMUSG00000026274.5|PAS domain containing serine/threonine kinase
mm10_v2_chr4_-_110290884_110290913	0.41194	Sox2	ENSMUST00000142722.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chrX_+_38189780_38189826	0.411493	Sox2	ENSMUST00000049740.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33 	ENSMUST00000115142.2|Zbtb33|ENSMUSG00000048047.3|zinc finger and BTB domain containing 33
mm10_v2_chr4_-_150003130_150003149	0.408575	Sox2	ENSMUST00000084117.6|H6pd|ENSMUSG00000028980.8|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
mm10_v2_chr8_+_35587780_35587825	0.406803	Sox2	ENSMUST00000037666.5|Mfhas1|ENSMUSG00000070056.5|malignant fibrous histiocytoma amplified sequence 1
mm10_v2_chr19_+_28990476_28990497	0.406342	Sox2	ENSMUST00000050148.3|Cdc37l1|ENSMUSG00000024780.6|cell division cycle 37-like 1
mm10_v2_chr17_-_46890405_46890405	0.406216	Sox2	ENSMUST00000086675.3|A330017A19Rik|ENSMUSG00000073388.2|RIKEN cDNA A330017A19 gene
mm10_v2_chr4_-_149676043_149676065	0.405463	Sox2	ENSMUST00000118704.1|Pik3cd|ENSMUSG00000039936.12|phosphatidylinositol 3-kinase catalytic delta polypeptide
mm10_v2_chr5_-_135934590_135934613	0.40482	Sox2	ENSMUST00000055808.5|Ywhag|ENSMUSG00000051391.8|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide
mm10_v2_chr17_-_35701937_35701964	0.402889	Sox2	ENSMUST00000155628.1|Ddr1|ENSMUSG00000003534.11|discoidin domain receptor family, member 1
mm10_v2_chr17_+_75005523_75005568	0.402358	Sox2	ENSMUST00000001927.5|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr2_+_90987603_90987746	0.401952	Sox2	ENSMUST00000111452.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111455.2|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr5_+_34549568_34549581	0.40171	Sox2	ENSMUST00000118545.1|Sh3bp2|ENSMUSG00000054520.9|SH3-domain binding protein 2
mm10_v2_chr17_+_26414820_26414965	0.400972	Sox2	ENSMUST00000182897.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000183077.1|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila) 	ENSMUST00000053020.7|Neurl1b|ENSMUSG00000034413.8|neuralized homolog 1b (Drosophila)
mm10_v2_chr7_-_122021143_122021222	0.40096	Sox2	ENSMUST00000033160.8|Gga2|ENSMUSG00000030872.8|golgi associated, gamma adaptin ear containing, ARF binding protein 2
mm10_v2_chr11_+_32455362_32455438	0.398487	Sox2	ENSMUST00000051053.4|Ubtd2|ENSMUSG00000044949.4|ubiquitin domain containing 2
mm10_v2_chr8_+_11312805_11312887	0.3972	Sox2	ENSMUST00000033899.7|Col4a2|ENSMUSG00000031503.7|collagen, type IV, alpha 2
mm10_v2_chr2_-_165034770_165034820	0.396948	Sox2	ENSMUST00000122070.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000121377.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr8_+_46490968_46490995	0.396705	Sox2	ENSMUST00000110372.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1 	ENSMUST00000130563.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr7_+_99381495_99381555	0.395165	Sox2	ENSMUST00000037528.8|Gdpd5|ENSMUSG00000035314.8|glycerophosphodiester phosphodiesterase domain containing 5
mm10_v2_chr9_-_72111827_72111895	0.395087	Sox2	ENSMUST00000183404.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12 	ENSMUST00000184783.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr18_-_23981555_23981555	0.395041	Sox2	ENSMUST00000115829.1|Zscan30|ENSMUSG00000024274.8|zinc finger and SCAN domain containing 30
mm10_v2_chr7_-_30169701_30169766	0.393598	Sox2	ENSMUST00000062181.7|Zfp146|ENSMUSG00000037029.7|zinc finger protein 146
mm10_v2_chr12_+_71309876_71309984	0.39325	Sox2	ENSMUST00000061273.5|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus) 	ENSMUST00000150639.1|Dact1|ENSMUSG00000044548.5|dapper homolog 1, antagonist of beta-catenin (xenopus)
mm10_v2_chr11_-_3863895_3863910	0.391919	Sox2	ENSMUST00000070552.7|Osbp2|ENSMUSG00000020435.11|oxysterol binding protein 2
mm10_v2_chr5_+_141856692_141856787	0.391679	Sox2	ENSMUST00000074546.6|Sdk1|ENSMUSG00000039683.10|sidekick homolog 1 (chicken)
mm10_v2_chr1_+_17145357_17145431	0.38803	Sox2	ENSMUST00000026879.7|Gdap1|ENSMUSG00000025777.7|ganglioside-induced differentiation-associated-protein 1
mm10_v2_chr18_+_76242135_76242174	0.387276	Sox2	ENSMUST00000172198.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr18_+_34624621_34624629	0.386638	Sox2	ENSMUST00000167161.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr19_+_40831296_40831313	0.385848	Sox2	ENSMUST00000119316.1|Ccnj|ENSMUSG00000025010.7|cyclin J
mm10_v2_chr4_+_154170730_154170742	0.38538	Sox2	ENSMUST00000030897.8|Megf6|ENSMUSG00000057751.8|multiple EGF-like-domains 6
mm10_v2_chr9_+_108508005_108508076	0.385342	Sox2	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr13_-_54749849_54749893	0.383571	Sox2	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr2_+_92185467_92185494	0.381526	Sox2	ENSMUST00000111291.2|Phf21a|ENSMUSG00000058318.9|PHD finger protein 21A
mm10_v2_chr6_-_134566913_134566995	0.381166	Sox2	ENSMUST00000032322.8|Lrp6|ENSMUSG00000030201.9|low density lipoprotein receptor-related protein 6
mm10_v2_chr11_-_20332654_20332688	0.379873	Sox2	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr17_+_37002574_37002596	0.378874	Sox2	ENSMUST00000173588.1|Zfp57|ENSMUSG00000036036.9|zinc finger protein 57
mm10_v2_chr4_-_99120856_99120894	0.37776	Sox2	ENSMUST00000030286.7|Dock7|ENSMUSG00000028556.9|dedicator of cytokinesis 7
mm10_v2_chr2_-_51149100_51149115	0.377262	Sox2	ENSMUST00000154545.1|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3 	ENSMUST00000017288.2|Rnd3|ENSMUSG00000017144.2|Rho family GTPase 3
mm10_v2_chr5_-_142550965_142551110	0.375953	Sox2	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr6_-_138421379_138421452	0.375861	Sox2	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr19_+_5024006_5024155	0.373813	Sox2	ENSMUST00000025826.5|Slc29a2|ENSMUSG00000024891.5|solute carrier family 29 (nucleoside transporters), member 2
mm10_v2_chr2_+_37516618_37516634	0.372966	Sox2	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr2_-_176917518_176917518	0.372507	Sox2	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr15_+_81872309_81872309	0.371552	Sox2	ENSMUST00000023116.6|Aco2|ENSMUSG00000022477.6|aconitase 2, mitochondrial
mm10_v2_chr11_+_103028327_103028368	0.371529	Sox2	ENSMUST00000021314.7|Nmt1|ENSMUSG00000020936.8|N-myristoyltransferase 1
mm10_v2_chr7_-_127875633_127875673	0.370056	Sox2	ENSMUST00000106261.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668 	ENSMUST00000144721.1|Zfp668|ENSMUSG00000049728.8|zinc finger protein 668
mm10_v2_chr6_+_51432663_51432674	0.369059	Sox2	ENSMUST00000005103.5|Nfe2l3|ENSMUSG00000029832.10|nuclear factor, erythroid derived 2, like 3
mm10_v2_chr11_-_69560186_69560213	0.368907	Sox2	ENSMUST00000004036.5|Efnb3|ENSMUSG00000003934.5|ephrin B3
mm10_v2_chr4_-_135272798_135272819	0.368083	Sox2	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr8_+_22757744_22757761	0.365896	Sox2	ENSMUST00000033941.5|Plat|ENSMUSG00000031538.5|plasminogen activator, tissue
mm10_v2_chr4_+_155839675_155839684	0.363032	Sox2	ENSMUST00000141883.1|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr7_+_100493795_100493848	0.362651	Sox2	ENSMUST00000129324.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr3_+_98382438_98382520	0.361958	Sox2	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr3_+_88142328_88142483	0.361841	Sox2	ENSMUST00000001455.6|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D 	ENSMUST00000119251.1|Mef2d|ENSMUSG00000001419.11|myocyte enhancer factor 2D
mm10_v2_chr8_+_25518757_25518772	0.360884	Sox2	ENSMUST00000178276.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1 	ENSMUST00000179592.1|Fgfr1|ENSMUSG00000031565.11|fibroblast growth factor receptor 1
mm10_v2_chr10_+_128303322_128303352	0.360761	Sox2	ENSMUST00000005825.6|Pan2|ENSMUSG00000005682.8|PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae)
mm10_v2_chr1_-_36558349_36558366	0.358336	Sox2	ENSMUST00000114991.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C 	ENSMUST00000114992.1|Sema4c|ENSMUSG00000026121.7|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
mm10_v2_chr16_+_41532851_41532865	0.358263	Sox2	ENSMUST00000078873.4|Lsamp|ENSMUSG00000061080.5|limbic system-associated membrane protein
mm10_v2_chr19_+_8898090_8898122	0.352955	Sox2	ENSMUST00000096246.3|Ganab|ENSMUSG00000071650.5|alpha glucosidase 2 alpha neutral subunit
mm10_v2_chr12_+_52699297_52699411	0.351902	Sox2	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr12_+_24831583_24831658	0.349928	Sox2	ENSMUST00000110942.3|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2 	ENSMUST00000078902.6|Mboat2|ENSMUSG00000020646.10|membrane bound O-acyltransferase domain containing 2
mm10_v2_chr7_+_66365905_66365905	0.349739	Sox2	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chr19_-_47919269_47919305	0.346659	Sox2	ENSMUST00000095998.5|Itprip|ENSMUSG00000079254.3|inositol 1,4,5-triphosphate receptor interacting protein
mm10_v2_chr15_-_88978958_88979007	0.346501	Sox2	ENSMUST00000042594.6|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human) 	ENSMUST00000109368.1|Mlc1|ENSMUSG00000035805.7|megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)
mm10_v2_chr13_-_102905740_102905814	0.34307	Sox2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr17_+_47140942_47140942	0.342593	Sox2	ENSMUST00000077951.7|Trerf1|ENSMUSG00000064043.7|transcriptional regulating factor 1
mm10_v2_chr8_+_34807287_34807310	0.34142	Sox2	ENSMUST00000033930.4|Dusp4|ENSMUSG00000031530.6|dual specificity phosphatase 4
mm10_v2_chr5_-_136567307_136567445	0.340984	Sox2	ENSMUST00000004097.9|Cux1|ENSMUSG00000029705.11|cut-like homeobox 1
mm10_v2_chrX_+_134295225_134295225	0.339555	Sox2	ENSMUST00000037687.7|Tmem35|ENSMUSG00000033578.7|transmembrane protein 35
mm10_v2_chr11_+_59662471_59662543	0.338755	Sox2	ENSMUST00000072031.6|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000116371.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000108751.1|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein 	ENSMUST00000066330.8|Mprip|ENSMUSG00000005417.11|myosin phosphatase Rho interacting protein
mm10_v2_chr8_-_84237042_84237061	0.337247	Sox2	ENSMUST00000039480.5|Zswim4|ENSMUSG00000035671.5|zinc finger SWIM-type containing 4
mm10_v2_chr11_+_97450136_97450180	0.33649	Sox2	ENSMUST00000107601.1|Arhgap23|ENSMUSG00000049807.10|Rho GTPase activating protein 23
mm10_v2_chr2_+_128967383_128967443	0.335892	Sox2	ENSMUST00000110320.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6 	ENSMUST00000110319.2|Zc3h6|ENSMUSG00000042851.11|zinc finger CCCH type containing 6
mm10_v2_chr12_+_19954505_19954505	0.333028	Sox2	ENSMUST00000179133.1|Gm21863|ENSMUSG00000095470.1|predicted gene, 21863
mm10_v2_chr10_-_94944578_94944578	0.331855	Sox2	ENSMUST00000099337.3|Plxnc1|ENSMUSG00000074785.4|plexin C1
mm10_v2_chr6_-_52012476_52012551	0.331761	Sox2	ENSMUST00000078214.5|Skap2|ENSMUSG00000059182.5|src family associated phosphoprotein 2
mm10_v2_chr10_+_69213084_69213228	0.331124	Sox2	ENSMUST00000163497.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000164212.1|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1 	ENSMUST00000067908.7|Rhobtb1|ENSMUSG00000019944.8|Rho-related BTB domain containing 1
mm10_v2_chr4_-_150652097_150652181	0.331098	Sox2	ENSMUST00000117997.1|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1 	ENSMUST00000037827.3|Slc45a1|ENSMUSG00000039838.5|solute carrier family 45, member 1
mm10_v2_chr16_+_37776873_37776873	0.330196	Sox2	ENSMUST00000114763.2|Fstl1|ENSMUSG00000022816.5|follistatin-like 1
mm10_v2_chr17_+_84956718_84956745	0.329943	Sox2	ENSMUST00000112305.3|Ppm1b|ENSMUSG00000061130.6|protein phosphatase 1B, magnesium dependent, beta isoform
mm10_v2_chr17_-_32284088_32284123	0.329757	Sox2	ENSMUST00000119123.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000003726.8|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000121285.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000120276.1|Brd4|ENSMUSG00000024002.10|bromodomain containing 4 	ENSMUST00000114475.2|Brd4|ENSMUSG00000024002.10|bromodomain containing 4
mm10_v2_chr5_+_81021583_81021593	0.329584	Sox2	ENSMUST00000121707.1|Lphn3|ENSMUSG00000037605.10|latrophilin 3
mm10_v2_chr15_+_88751649_88751661	0.329134	Sox2	ENSMUST00000041297.8|Zbed4|ENSMUSG00000034333.9|zinc finger, BED domain containing 4
mm10_v2_chr2_+_147012996_147013083	0.327746	Sox2	ENSMUST00000028921.5|Xrn2|ENSMUSG00000027433.5|5'-3' exoribonuclease 2
mm10_v2_chr19_+_26753588_26753603	0.326531	Sox2	ENSMUST00000177116.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr5_-_143732273_143732316	0.326437	Sox2	ENSMUST00000053287.5|Usp42|ENSMUSG00000051306.7|ubiquitin specific peptidase 42
mm10_v2_chr2_-_121807024_121807087	0.326212	Sox2	ENSMUST00000138157.1|Frmd5|ENSMUSG00000027238.10|FERM domain containing 5
mm10_v2_chr8_+_70863127_70863127	0.32541	Sox2	ENSMUST00000050921.2|A230052G05Rik|ENSMUSG00000020887.3|RIKEN cDNA A230052G05 gene
mm10_v2_chr1_-_139377041_139377078	0.322495	Sox2	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr4_-_156197479_156197496	0.322335	Sox2	ENSMUST00000075787.6|Agrn|ENSMUSG00000041936.12|agrin 	ENSMUST00000180572.1|Agrn|ENSMUSG00000041936.12|agrin
mm10_v2_chr11_+_6389442_6389471	0.320815	Sox2	ENSMUST00000109786.1|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr3_-_89365233_89365253	0.320332	Sox2	ENSMUST00000070820.6|Dcst1|ENSMUSG00000042672.9|DC-STAMP domain containing 1
mm10_v2_chr2_+_3114220_3114225	0.320242	Sox2	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chr8_+_31111816_31111891	0.319676	Sox2	ENSMUST00000046941.7|Rnf122|ENSMUSG00000039328.9|ring finger protein 122
mm10_v2_chr9_+_119402444_119402501	0.319623	Sox2	ENSMUST00000035093.8|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB 	ENSMUST00000165044.1|Acvr2b|ENSMUSG00000061393.7|activin receptor IIB
mm10_v2_chr7_-_63938862_63938933	0.319584	Sox2	ENSMUST00000063694.8|Klf13|ENSMUSG00000052040.9|Kruppel-like factor 13
mm10_v2_chr11_+_6389330_6389397	0.31643	Sox2	ENSMUST00000012612.4|Zmiz2|ENSMUSG00000041164.9|zinc finger, MIZ-type containing 2
mm10_v2_chr9_+_106821874_106821994	0.312671	Sox2	ENSMUST00000159645.1|Vprbp|ENSMUSG00000040325.10|Vpr (HIV-1) binding protein
mm10_v2_chr10_+_42860648_42860676	0.312284	Sox2	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr11_-_20332689_20332774	0.310711	Sox2	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr9_-_75409352_75409383	0.309127	Sox2	ENSMUST00000168937.1|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr19_-_56822161_56822220	0.307962	Sox2	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr11_-_54787597_54787711	0.305219	Sox2	ENSMUST00000153209.1|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2 	ENSMUST00000064104.6|Cdc42se2|ENSMUSG00000052298.6|CDC42 small effector 2
mm10_v2_chr13_-_41220162_41220195	0.304764	Sox2	ENSMUST00000117096.1|Elovl2|ENSMUSG00000021364.9|elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
mm10_v2_chr3_+_40745332_40745382	0.304369	Sox2	ENSMUST00000159819.1|Hspa4l|ENSMUSG00000025757.7|heat shock protein 4 like
mm10_v2_chr8_+_69808672_69808742	0.302857	Sox2	ENSMUST00000036074.8|Gmip|ENSMUSG00000036246.8|Gem-interacting protein 	ENSMUST00000123453.1|Gmip|ENSMUSG00000036246.8|Gem-interacting protein
mm10_v2_chr4_-_63403330_63403354	0.302182	Sox2	ENSMUST00000035724.4|Akna|ENSMUSG00000039158.11|AT-hook transcription factor
mm10_v2_chr1_+_135146782_135146871	0.301389	Sox2	ENSMUST00000027684.4|Arl8a|ENSMUSG00000026426.4|ADP-ribosylation factor-like 8A
mm10_v2_chr5_-_136244865_136244908	0.300504	Sox2	ENSMUST00000005188.9|Sh2b2|ENSMUSG00000005057.9|SH2B adaptor protein 2
mm10_v2_chr19_+_6363719_6363810	0.300023	Sox2	ENSMUST00000113489.1|Sf1|ENSMUSG00000024949.11|splicing factor 1 	ENSMUST00000113488.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr9_-_103761820_103761847	0.299569	Sox2	ENSMUST00000049452.8|Tmem108|ENSMUSG00000042757.9|transmembrane protein 108
mm10_v2_chrX_-_38576166_38576187	0.298928	Sox2	ENSMUST00000050083.5|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr16_-_90284300_90284348	0.298581	Sox2	ENSMUST00000163419.1|Scaf4|ENSMUSG00000022983.9|SR-related CTD-associated factor 4
mm10_v2_chr13_+_16014457_16014475	0.297607	Sox2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr9_-_37147257_37147323	0.296258	Sox2	ENSMUST00000039674.5|Pknox2|ENSMUSG00000035934.9|Pbx/knotted 1 homeobox 2 	ENSMUST00000080754.5|Pknox2|ENSMUSG00000035934.9|Pbx/knotted 1 homeobox 2
mm10_v2_chr11_+_75733037_75733148	0.29586	Sox2	ENSMUST00000131398.1|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr4_-_91376433_91376477	0.294868	Sox2	ENSMUST00000107109.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107111.2|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) 	ENSMUST00000107120.1|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr8_-_122678072_122678182	0.294691	Sox2	ENSMUST00000006525.7|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human) 	ENSMUST00000064674.6|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr14_+_65971164_65971303	0.294356	Sox2	ENSMUST00000144619.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr14_-_33447142_33447179	0.293745	Sox2	ENSMUST00000111944.3|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000022504.5|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8 	ENSMUST00000111945.2|Mapk8|ENSMUSG00000021936.7|mitogen-activated protein kinase 8
mm10_v2_chr4_+_86053887_86053987	0.292054	Sox2	ENSMUST00000107178.2|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000048885.5|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000141889.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1 	ENSMUST00000120678.1|Adamtsl1|ENSMUSG00000066113.9|ADAMTS-like 1
mm10_v2_chr5_-_138155694_138155744	0.290412	Sox2	ENSMUST00000132318.1|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113 	ENSMUST00000049393.8|Zfp113|ENSMUSG00000037007.11|zinc finger protein 113
mm10_v2_chr5_+_130187158_130187166	0.290311	Sox2	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr10_+_39612934_39612934	0.290152	Sox2	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr8_+_94977101_94977123	0.287986	Sox2	ENSMUST00000179619.1|Gpr56|ENSMUSG00000031785.9|G protein-coupled receptor 56
mm10_v2_chr11_+_94044194_94044238	0.287926	Sox2	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr6_-_138422898_138422999	0.286723	Sox2	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr5_+_143548700_143548756	0.28641	Sox2	ENSMUST00000169329.1|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000067145.5|Fam220a|ENSMUSG00000048910.9|family with sequence similarity 220, member A 	ENSMUST00000119488.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A 	ENSMUST00000118121.1|Fam220a|ENSMUSG00000083012.2|family with sequence similarity 220, member A
mm10_v2_chr13_-_84064772_84064808	0.285117	Sox2	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr11_+_87760533_87760587	0.284951	Sox2	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr3_+_153973436_153973520	0.280797	Sox2	ENSMUST00000089948.5|Slc44a5|ENSMUSG00000028360.9|solute carrier family 44, member 5
mm10_v2_chr16_-_3908596_3908623	0.279101	Sox2	ENSMUST00000123235.2|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr4_-_151861667_151861679	0.278864	Sox2	ENSMUST00000169423.2|Camta1|ENSMUSG00000014592.13|calmodulin binding transcription activator 1
mm10_v2_chr2_-_65567505_65567627	0.277523	Sox2	ENSMUST00000100069.2|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr11_-_68386821_68386835	0.274606	Sox2	ENSMUST00000021284.3|Ntn1|ENSMUSG00000020902.6|netrin 1
mm10_v2_chr11_-_82890541_82890626	0.273847	Sox2	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr1_+_82839449_82839518	0.272737	Sox2	ENSMUST00000113444.1|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1 	ENSMUST00000063380.4|Agfg1|ENSMUSG00000026159.7|ArfGAP with FG repeats 1
mm10_v2_chrX_+_159840463_159840481	0.272609	Sox2	ENSMUST00000112451.1|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1 	ENSMUST00000112453.2|Sh3kbp1|ENSMUSG00000040990.11|SH3-domain kinase binding protein 1
mm10_v2_chr4_-_44167580_44167608	0.272352	Sox2	ENSMUST00000098098.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr5_-_142905928_142905978	0.271097	Sox2	ENSMUST00000106216.2|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr9_+_59617284_59617301	0.27062	Sox2	ENSMUST00000026267.8|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6 	ENSMUST00000050483.7|Parp6|ENSMUSG00000025237.9|poly (ADP-ribose) polymerase family, member 6
mm10_v2_chr5_+_142702091_142702153	0.270386	Sox2	ENSMUST00000058418.7|Slc29a4|ENSMUSG00000050822.7|solute carrier family 29 (nucleoside transporters), member 4
mm10_v2_chr2_+_52857844_52857868	0.268916	Sox2	ENSMUST00000090952.4|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000049483.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2 	ENSMUST00000050719.6|Fmnl2|ENSMUSG00000036053.10|formin-like 2
mm10_v2_chr6_+_115675983_115676004	0.267739	Sox2	ENSMUST00000068960.9|D830050J10Rik|ENSMUSG00000055396.9|RIKEN cDNA D830050J10 gene
mm10_v2_chr7_+_29309429_29309513	0.266863	Sox2	ENSMUST00000137848.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr13_-_9765137_9765321	0.266821	Sox2	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr5_-_38159457_38159491	0.266613	Sox2	ENSMUST00000031009.4|Nsg1|ENSMUSG00000029126.4|neuron specific gene family member 1
mm10_v2_chr5_-_138170992_138171033	0.264811	Sox2	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr3_-_51560816_51560878	0.261762	Sox2	ENSMUST00000037141.7|Setd7|ENSMUSG00000037111.8|SET domain containing (lysine methyltransferase) 7
mm10_v2_chr5_-_134456702_134456785	0.260873	Sox2	ENSMUST00000073161.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000171794.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000111245.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100654.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000167084.2|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100652.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000100650.3|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1 	ENSMUST00000074114.5|Gtf2ird1|ENSMUSG00000023079.8|general transcription factor II I repeat domain-containing 1
mm10_v2_chr5_+_93268247_93268314	0.259885	Sox2	ENSMUST00000121127.1|Ccng2|ENSMUSG00000029385.8|cyclin G2
mm10_v2_chr16_+_13986596_13986674	0.25759	Sox2	ENSMUST00000056521.5|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000118412.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene 	ENSMUST00000131608.1|2900011O08Rik|ENSMUSG00000044117.6|RIKEN cDNA 2900011O08 gene
mm10_v2_chr10_-_84533968_84534036	0.25729	Sox2	ENSMUST00000167671.1|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr9_+_13619990_13619990	0.257248	Sox2	ENSMUST00000159294.1|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr4_-_129121889_129122063	0.256058	Sox2	ENSMUST00000139450.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000125931.1|Hpca|ENSMUSG00000028785.6|hippocalcin 	ENSMUST00000116444.2|Hpca|ENSMUSG00000028785.6|hippocalcin
mm10_v2_chr2_+_27677234_27677295	0.255582	Sox2	ENSMUST00000166775.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr8_+_122376676_122376701	0.25362	Sox2	ENSMUST00000176629.1|Zc3h18|ENSMUSG00000017478.9|zinc finger CCCH-type containing 18
mm10_v2_chr15_+_75940952_75941015	0.253319	Sox2	ENSMUST00000037260.6|Zfp623|ENSMUSG00000050846.8|zinc finger protein 623
mm10_v2_chr5_+_108065696_108065738	0.252595	Sox2	ENSMUST00000172045.1|Mtf2|ENSMUSG00000029267.11|metal response element binding transcription factor 2
mm10_v2_chr11_+_69846665_69846681	0.252405	Sox2	ENSMUST00000019605.2|Plscr3|ENSMUSG00000019461.6|phospholipid scramblase 3
mm10_v2_chr2_+_26315513_26315602	0.252184	Sox2	ENSMUST00000066936.2|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans) 	ENSMUST00000078616.5|Gpsm1|ENSMUSG00000026930.9|G-protein signalling modulator 1 (AGS3-like, C. elegans)
mm10_v2_chr10_+_41476314_41476392	0.251831	Sox2	ENSMUST00000119962.1|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000019967.9|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1 	ENSMUST00000099934.4|Mical1|ENSMUSG00000019823.11|microtubule associated monooxygenase, calponin and LIM domain containing 1
mm10_v2_chr10_-_12861735_12861735	0.250693	Sox2	ENSMUST00000076817.4|Utrn|ENSMUSG00000019820.9|utrophin
mm10_v2_chr16_-_18289199_18289260	0.250365	Sox2	ENSMUST00000009321.4|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8 	ENSMUST00000115633.1|Dgcr8|ENSMUSG00000022718.5|DiGeorge syndrome critical region gene 8
mm10_v2_chr19_-_3575708_3575756	0.250152	Sox2	ENSMUST00000113997.2|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000025846.8|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3 	ENSMUST00000172362.1|Ppp6r3|ENSMUSG00000024908.8|protein phosphatase 6, regulatory subunit 3
mm10_v2_chr15_-_95528702_95528777	0.249221	Sox2	ENSMUST00000166170.1|Nell2|ENSMUSG00000022454.10|NEL-like 2
mm10_v2_chr18_+_37725706_37725754	0.247783	Sox2	ENSMUST00000066149.6|Pcdhga9|ENSMUSG00000023036.8|protocadherin gamma subfamily A, 9
mm10_v2_chr15_-_79658889_79658956	0.247246	Sox2	ENSMUST00000109648.2|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A 	ENSMUST00000046816.6|Fam227a|ENSMUSG00000042564.6|family with sequence similarity 227, member A
mm10_v2_chr2_+_164879358_164879398	0.246976	Sox2	ENSMUST00000041643.3|Pcif1|ENSMUSG00000039849.5|PDX1 C-terminal inhibiting factor 1
mm10_v2_chr2_+_160731684_160731760	0.24667	Sox2	ENSMUST00000174885.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1 	ENSMUST00000109462.1|Plcg1|ENSMUSG00000016933.11|phospholipase C, gamma 1
mm10_v2_chr9_+_96259246_96259261	0.246541	Sox2	ENSMUST00000179065.1|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000165768.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr2_-_175131864_175131864	0.24624	Sox2	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr7_-_47132698_47132717	0.24569	Sox2	ENSMUST00000033142.5|Ptpn5|ENSMUSG00000030854.9|protein tyrosine phosphatase, non-receptor type 5
mm10_v2_chr1_+_81077274_81077327	0.244808	Sox2	ENSMUST00000068275.5|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 	ENSMUST00000113494.2|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr1_-_97761538_97761609	0.243826	Sox2	ENSMUST00000171129.1|Ppip5k2|ENSMUSG00000040648.8|diphosphoinositol pentakisphosphate kinase 2
mm10_v2_chr17_+_31296191_31296253	0.241926	Sox2	ENSMUST00000165149.1|Slc37a1|ENSMUSG00000024036.9|solute carrier family 37 (glycerol-3-phosphate transporter), member 1
mm10_v2_chr16_+_27388869_27388980	0.240744	Sox2	ENSMUST00000100026.3|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000039443.7|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50 	ENSMUST00000096127.4|Ccdc50|ENSMUSG00000038127.8|coiled-coil domain containing 50
mm10_v2_chr13_+_64432479_64432557	0.240096	Sox2	ENSMUST00000021939.6|Cdk20|ENSMUSG00000021483.7|cyclin-dependent kinase 20
mm10_v2_chr17_-_50094277_50094332	0.239301	Sox2	ENSMUST00000113195.1|Rftn1|ENSMUSG00000039316.8|raftlin lipid raft linker 1
mm10_v2_chr9_+_59578192_59578337	0.238022	Sox2	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr4_-_44167905_44167976	0.237833	Sox2	ENSMUST00000102934.2|Rnf38|ENSMUSG00000035696.9|ring finger protein 38
mm10_v2_chr11_+_58330744_58330777	0.236844	Sox2	ENSMUST00000073128.6|Sh3bp5l|ENSMUSG00000013646.11|SH3 binding domain protein 5 like
mm10_v2_chr13_+_21945084_21945140	0.235502	Sox2	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr11_-_115699461_115699534	0.235402	Sox2	ENSMUST00000106497.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr1_-_164458345_164458363	0.235315	Sox2	ENSMUST00000027863.7|Atp1b1|ENSMUSG00000026576.7|ATPase, Na+/K+ transporting, beta 1 polypeptide
mm10_v2_chr9_-_75409951_75410039	0.234744	Sox2	ENSMUST00000049355.10|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chr3_+_88621274_88621292	0.234088	Sox2	ENSMUST00000107510.3|Arhgef2|ENSMUSG00000028059.8|rho/rac guanine nucleotide exchange factor (GEF) 2
mm10_v2_chr6_-_88875035_88875053	0.233916	Sox2	ENSMUST00000145944.1|Podxl2|ENSMUSG00000033152.7|podocalyxin-like 2
mm10_v2_chr7_+_100494044_100494088	0.233748	Sox2	ENSMUST00000153287.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr3_-_49757257_49757316	0.231341	Sox2	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr7_+_141061274_141061311	0.230088	Sox2	ENSMUST00000048002.5|B4galnt4|ENSMUSG00000055629.4|beta-1,4-N-acetyl-galactosaminyl transferase 4
mm10_v2_chr17_+_35135695_35135781	0.230072	Sox2	ENSMUST00000174478.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000174281.2|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6 	ENSMUST00000173550.1|Bag6|ENSMUSG00000024392.11|BCL2-associated athanogene 6
mm10_v2_chr11_+_94044331_94044365	0.229821	Sox2	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr14_+_73142591_73142723	0.228955	Sox2	ENSMUST00000170368.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr2_-_60125651_60125775	0.228546	Sox2	ENSMUST00000112550.1|Baz2b|ENSMUSG00000026987.10|bromodomain adjacent to zinc finger domain, 2B
mm10_v2_chrX_+_18162575_18162657	0.227301	Sox2	ENSMUST00000044484.6|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A 	ENSMUST00000052368.8|Kdm6a|ENSMUSG00000037369.10|lysine (K)-specific demethylase 6A
mm10_v2_chr4_-_129696579_129696620	0.226981	Sox2	ENSMUST00000137640.1|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr18_+_74268251_74268337	0.225532	Sox2	ENSMUST00000097530.3|Mbd1|ENSMUSG00000024561.8|methyl-CpG binding domain protein 1
mm10_v2_chr5_-_138171216_138171246	0.22546	Sox2	ENSMUST00000147920.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr1_-_132390301_132390373	0.224947	Sox2	ENSMUST00000132435.1|Tmcc2|ENSMUSG00000042066.9|transmembrane and coiled-coil domains 2
mm10_v2_chr2_+_72297895_72297912	0.222271	Sox2	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr7_-_13009795_13009856	0.221104	Sox2	ENSMUST00000051390.7|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45 	ENSMUST00000172240.1|Zbtb45|ENSMUSG00000049600.7|zinc finger and BTB domain containing 45
mm10_v2_chr7_+_126272589_126272619	0.220566	Sox2	ENSMUST00000056028.9|Sbk1|ENSMUSG00000042978.9|SH3-binding kinase 1
mm10_v2_chr12_-_98737405_98737515	0.219963	Sox2	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chr1_-_181183739_181183739	0.219914	Sox2	ENSMUST00000159290.1|Wdr26|ENSMUSG00000038733.7|WD repeat domain 26
mm10_v2_chr17_-_33760306_33760348	0.218928	Sox2	ENSMUST00000173860.1|Rab11b|ENSMUSG00000077450.6|RAB11B, member RAS oncogene family
mm10_v2_chr11_+_64979025_64979110	0.218783	Sox2	ENSMUST00000071891.5|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000108697.1|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli) 	ENSMUST00000101049.2|Elac2|ENSMUSG00000020549.8|elaC homolog 2 (E. coli)
mm10_v2_chr10_+_79996479_79996505	0.21788	Sox2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr2_+_146221921_146221921	0.216782	Sox2	ENSMUST00000089257.4|Insm1|ENSMUSG00000068154.4|insulinoma-associated 1
mm10_v2_chr13_-_58402103_58402149	0.216538	Sox2	ENSMUST00000176305.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176558.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K 	ENSMUST00000176849.1|Hnrnpk|ENSMUSG00000021546.11|heterogeneous nuclear ribonucleoprotein K
mm10_v2_chr6_+_54039935_54040039	0.216356	Sox2	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr13_-_54565368_54565435	0.215107	Sox2	ENSMUST00000026989.8|4833439L19Rik|ENSMUSG00000025871.12|RIKEN cDNA 4833439L19 gene
mm10_v2_chrX_+_77511002_77511100	0.214337	Sox2	ENSMUST00000088217.5|Tbl1x|ENSMUSG00000025246.7|transducin (beta)-like 1 X-linked
mm10_v2_chr9_-_121995962_121996041	0.214264	Sox2	ENSMUST00000084743.5|Pomgnt2|ENSMUSG00000066235.6|protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
mm10_v2_chr3_-_97227364_97227421	0.214033	Sox2	ENSMUST00000046521.7|Bcl9|ENSMUSG00000038256.9|B cell CLL/lymphoma 9
mm10_v2_chr10_+_94575257_94575295	0.211547	Sox2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr2_+_32535315_32535359	0.211281	Sox2	ENSMUST00000133512.1|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A 	ENSMUST00000048375.5|Fam102a|ENSMUSG00000039157.6|family with sequence similarity 102, member A
mm10_v2_chr4_-_140648736_140648781	0.211183	Sox2	ENSMUST00000039204.3|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000105799.1|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like 	ENSMUST00000097820.2|Arhgef10l|ENSMUSG00000040964.10|Rho guanine nucleotide exchange factor (GEF) 10-like
mm10_v2_chr5_-_65697856_65697963	0.211005	Sox2	ENSMUST00000031104.6|Pds5a|ENSMUSG00000029202.9|PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)
mm10_v2_chr5_+_148265307_148265345	0.210685	Sox2	ENSMUST00000110514.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr8_+_11556061_11556099	0.2095	Sox2	ENSMUST00000054399.4|Ing1|ENSMUSG00000045969.7|inhibitor of growth family, member 1
mm10_v2_chr11_+_16951371_16951417	0.208356	Sox2	ENSMUST00000109635.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48 	ENSMUST00000061327.1|Fbxo48|ENSMUSG00000044966.4|F-box protein 48
mm10_v2_chr19_-_40588338_40588371	0.207683	Sox2	ENSMUST00000176939.1|Aldh18a1|ENSMUSG00000025007.7|aldehyde dehydrogenase 18 family, member A1
mm10_v2_chr5_-_28467093_28467109	0.206367	Sox2	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr6_+_125096145_125096162	0.205923	Sox2	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr9_+_59291565_59291577	0.204963	Sox2	ENSMUST00000026266.7|Adpgk|ENSMUSG00000025236.10|ADP-dependent glucokinase
mm10_v2_chr19_-_28967794_28967852	0.204562	Sox2	ENSMUST00000162110.1|4430402I18Rik|ENSMUSG00000064202.9|RIKEN cDNA 4430402I18 gene
mm10_v2_chr14_+_73142490_73142564	0.203072	Sox2	ENSMUST00000170370.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000164822.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 	ENSMUST00000165429.1|Rcbtb2|ENSMUSG00000022106.8|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2
mm10_v2_chr11_-_88718078_88718104	0.201717	Sox2	ENSMUST00000092794.5|Msi2|ENSMUSG00000069769.7|musashi RNA-binding protein 2
mm10_v2_chr3_+_7503423_7503503	0.201316	Sox2	ENSMUST00000051064.3|Zc2hc1a|ENSMUSG00000043542.7|zinc finger, C2HC-type containing 1A
mm10_v2_chr18_+_37307445_37307462	0.201174	Sox2	ENSMUST00000056712.2|Pcdhb4|ENSMUSG00000045689.2|protocadherin beta 4
mm10_v2_chr4_+_152096719_152096782	0.20115	Sox2	ENSMUST00000105661.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5 	ENSMUST00000084115.3|Plekhg5|ENSMUSG00000039713.10|pleckstrin homology domain containing, family G (with RhoGef domain) member 5
mm10_v2_chr7_+_82174796_82174825	0.20086	Sox2	ENSMUST00000032874.7|Sh3gl3|ENSMUSG00000030638.7|SH3-domain GRB2-like 3
mm10_v2_chr14_-_40966807_40966848	0.198964	Sox2	ENSMUST00000047652.5|Tspan14|ENSMUSG00000037824.5|tetraspanin 14
mm10_v2_chr8_-_122699066_122699119	0.198691	Sox2	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr10_+_127165118_127165225	0.197733	Sox2	ENSMUST00000006914.9|B4galnt1|ENSMUSG00000006731.9|beta-1,4-N-acetyl-galactosaminyl transferase 1
mm10_v2_chr5_-_138171248_138171274	0.196731	Sox2	ENSMUST00000153867.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr11_-_76217490_76217664	0.196349	Sox2	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chr11_-_115699307_115699324	0.196277	Sox2	ENSMUST00000106499.1|Grb2|ENSMUSG00000059923.7|growth factor receptor bound protein 2
mm10_v2_chr4_+_117849361_117849375	0.194933	Sox2	ENSMUST00000163288.1|Slc6a9|ENSMUSG00000028542.11|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm10_v2_chr16_-_76373827_76373852	0.194924	Sox2	ENSMUST00000121927.1|Nrip1|ENSMUSG00000048490.7|nuclear receptor interacting protein 1
mm10_v2_chr15_-_73423180_73423218	0.194896	Sox2	ENSMUST00000110036.2|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2 	ENSMUST00000170939.1|Ptk2|ENSMUSG00000022607.8|PTK2 protein tyrosine kinase 2
mm10_v2_chr18_-_46212595_46212634	0.194676	Sox2	ENSMUST00000037011.4|Trim36|ENSMUSG00000033949.5|tripartite motif-containing 36
mm10_v2_chr12_-_72236692_72236724	0.192477	Sox2	ENSMUST00000021497.9|Rtn1|ENSMUSG00000021087.11|reticulon 1 	ENSMUST00000137990.1|Rtn1|ENSMUSG00000021087.11|reticulon 1
mm10_v2_chr2_-_69586021_69586065	0.19132	Sox2	ENSMUST00000100051.2|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000092551.4|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2 	ENSMUST00000080953.5|Lrp2|ENSMUSG00000027070.8|low density lipoprotein receptor-related protein 2
mm10_v2_chr2_+_32621750_32621774	0.190877	Sox2	ENSMUST00000113278.2|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr16_-_17911303_17911354	0.190066	Sox2	ENSMUST00000003621.8|Dgcr14|ENSMUSG00000003527.8|DiGeorge syndrome critical region gene 14
mm10_v2_chr11_-_121229293_121229322	0.189527	Sox2	ENSMUST00000106115.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000038709.7|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643 	ENSMUST00000147490.1|BC017643|ENSMUSG00000039294.8|cDNA sequence BC017643
mm10_v2_chr10_+_43579161_43579178	0.18891	Sox2	ENSMUST00000058714.8|Cd24a|ENSMUSG00000047139.8|CD24a antigen
mm10_v2_chr12_-_80436571_80436603	0.18886	Sox2	ENSMUST00000054145.6|Dcaf5|ENSMUSG00000049106.6|DDB1 and CUL4 associated factor 5
mm10_v2_chr5_+_147957310_147957357	0.188644	Sox2	ENSMUST00000085558.4|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2 	ENSMUST00000129092.1|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr3_-_85741389_85741389	0.18843	Sox2	ENSMUST00000094148.4|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr17_+_69383768_69383840	0.186573	Sox2	ENSMUST00000112676.2|Zbtb14|ENSMUSG00000049672.8|zinc finger and BTB domain containing 14
mm10_v2_chr10_-_79874233_79874439	0.185908	Sox2	ENSMUST00000166023.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000167707.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000165601.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chr7_-_111779963_111779993	0.185141	Sox2	ENSMUST00000049430.8|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18 	ENSMUST00000106663.1|Galnt18|ENSMUSG00000038296.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18
mm10_v2_chr18_+_82475133_82475162	0.185141	Sox2	ENSMUST00000091789.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114676.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000047865.7|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr15_-_79441802_79441860	0.184854	Sox2	ENSMUST00000122044.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon 	ENSMUST00000135519.1|Csnk1e|ENSMUSG00000022433.12|casein kinase 1, epsilon
mm10_v2_chr1_-_30949756_30949770	0.182304	Sox2	ENSMUST00000076587.3|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1 	ENSMUST00000027232.7|Ptp4a1|ENSMUSG00000026064.9|protein tyrosine phosphatase 4a1
mm10_v2_chr11_+_115381906_115381933	0.182262	Sox2	ENSMUST00000053288.5|Cdr2l|ENSMUSG00000050910.5|cerebellar degeneration-related protein 2-like
mm10_v2_chr19_-_46395722_46395756	0.180317	Sox2	ENSMUST00000040270.4|Actr1a|ENSMUSG00000025228.4|ARP1 actin-related protein 1A, centractin alpha
mm10_v2_chrX_-_104201099_104201117	0.180315	Sox2	ENSMUST00000087879.4|C77370|ENSMUSG00000046449.9|expressed sequence C77370
mm10_v2_chr7_-_111082997_111083037	0.17984	Sox2	ENSMUST00000161051.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000160132.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000106666.3|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2 	ENSMUST00000162415.1|Eif4g2|ENSMUSG00000005610.10|eukaryotic translation initiation factor 4, gamma 2
mm10_v2_chr5_+_3928267_3928300	0.178537	Sox2	ENSMUST00000044492.8|Akap9|ENSMUSG00000040407.11|A kinase (PRKA) anchor protein (yotiao) 9
mm10_v2_chr15_+_76246747_76246807	0.178484	Sox2	ENSMUST00000023225.6|Grina|ENSMUSG00000022564.6|glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)
mm10_v2_chrX_+_162901226_162901261	0.1781	Sox2	ENSMUST00000101095.2|Ctps2|ENSMUSG00000031360.8|cytidine 5'-triphosphate synthase 2
mm10_v2_chr2_-_140671400_140671427	0.178094	Sox2	ENSMUST00000056760.3|Flrt3|ENSMUSG00000051379.6|fibronectin leucine rich transmembrane protein 3
mm10_v2_chr10_+_80148263_80148279	0.177917	Sox2	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr14_-_62292959_62293019	0.17788	Sox2	ENSMUST00000063169.8|Dleu7|ENSMUSG00000048281.8|deleted in lymphocytic leukemia, 7
mm10_v2_chr3_-_158016419_158016453	0.177678	Sox2	ENSMUST00000127778.1|Srsf11|ENSMUSG00000055436.12|serine/arginine-rich splicing factor 11
mm10_v2_chr10_+_37139558_37139558	0.176963	Sox2	ENSMUST00000062667.3|5930403N24Rik|ENSMUSG00000046463.3|RIKEN cDNA 5930403N24 gene
mm10_v2_chr16_-_96082389_96082481	0.176172	Sox2	ENSMUST00000099502.2|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000023631.8|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000113829.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1 	ENSMUST00000153398.1|Brwd1|ENSMUSG00000022914.9|bromodomain and WD repeat domain containing 1
mm10_v2_chr11_-_117040182_117040200	0.173846	Sox2	ENSMUST00000152401.1|Gm11728|ENSMUSG00000086902.1|predicted gene 11728 	ENSMUST00000150628.1|Gm11728|ENSMUSG00000086902.1|predicted gene 11728
mm10_v2_chr16_-_85901118_85901133	0.173837	Sox2	ENSMUST00000023611.5|Adamts5|ENSMUSG00000022894.5|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
mm10_v2_chr1_+_59482133_59482179	0.170964	Sox2	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr9_-_65021645_65021717	0.170839	Sox2	ENSMUST00000036615.5|Ptplad1|ENSMUSG00000033629.5|protein tyrosine phosphatase-like A domain containing 1
mm10_v2_chr10_+_26078255_26078255	0.170298	Sox2	ENSMUST00000041011.3|Gm9767|ENSMUSG00000039098.3|predicted gene 9767
mm10_v2_chr14_+_21499770_21499883	0.169794	Sox2	ENSMUST00000182855.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000069648.7|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B 	ENSMUST00000182405.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr11_+_106216926_106216968	0.169483	Sox2	ENSMUST00000021046.5|Ddx42|ENSMUSG00000020705.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm10_v2_chr11_-_98400393_98400446	0.167501	Sox2	ENSMUST00000128897.1|Pgap3|ENSMUSG00000038208.7|post-GPI attachment to proteins 3
mm10_v2_chr5_+_107331157_107331197	0.166493	Sox2	ENSMUST00000031215.8|Brdt|ENSMUSG00000029279.9|bromodomain, testis-specific 	ENSMUST00000112677.3|Brdt|ENSMUSG00000029279.9|bromodomain, testis-specific
mm10_v2_chr2_+_90940397_90940543	0.165581	Sox2	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr9_+_18427543_18427543	0.165551	Sox2	ENSMUST00000053326.9|Gm5612|ENSMUSG00000074501.5|predicted gene 5612
mm10_v2_chr12_+_38780817_38780854	0.164571	Sox2	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr2_-_20968881_20968957	0.161625	Sox2	ENSMUST00000114594.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr17_+_67697253_67697276	0.160546	Sox2	ENSMUST00000035471.7|Lama1|ENSMUSG00000032796.7|laminin, alpha 1
mm10_v2_chr7_-_98361275_98361295	0.160344	Sox2	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr1_-_182019927_182019989	0.160138	Sox2	ENSMUST00000078719.6|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111030.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000177811.1|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111024.3|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila) 	ENSMUST00000111025.2|Enah|ENSMUSG00000022995.10|enabled homolog (Drosophila)
mm10_v2_chr2_+_32625431_32625442	0.159472	Sox2	ENSMUST00000113277.1|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr3_-_75956888_75956959	0.158485	Sox2	ENSMUST00000038563.7|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000167078.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4 	ENSMUST00000117242.1|Golim4|ENSMUSG00000034109.9|golgi integral membrane protein 4
mm10_v2_chr4_+_59626189_59626253	0.157911	Sox2	ENSMUST00000070150.4|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene 	ENSMUST00000052420.6|E130308A19Rik|ENSMUSG00000045071.7|RIKEN cDNA E130308A19 gene
mm10_v2_chr2_+_119675062_119675095	0.157753	Sox2	ENSMUST00000028767.8|Rtf1|ENSMUSG00000027304.9|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
mm10_v2_chr17_-_33760451_33760530	0.157735	Sox2	ENSMUST00000057373.7|Rab11b|ENSMUSG00000077450.6|RAB11B, member RAS oncogene family
mm10_v2_chr5_+_124541296_124541329	0.157573	Sox2	ENSMUST00000124529.1|Tmed2|ENSMUSG00000029390.7|transmembrane emp24 domain trafficking protein 2
mm10_v2_chr17_+_26252915_26252983	0.157256	Sox2	ENSMUST00000114976.2|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000140427.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like 	ENSMUST00000119928.1|Luc7l|ENSMUSG00000024188.9|Luc7 homolog (S. cerevisiae)-like
mm10_v2_chr7_+_141949982_141950086	0.15661	Sox2	ENSMUST00000105989.2|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000075528.5|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2 	ENSMUST00000174499.1|Brsk2|ENSMUSG00000053046.8|BR serine/threonine kinase 2
mm10_v2_chr12_+_84996487_84996496	0.155997	Sox2	ENSMUST00000101202.3|Ylpm1|ENSMUSG00000021244.9|YLP motif containing 1
mm10_v2_chr6_-_144209558_144209647	0.154268	Sox2	ENSMUST00000111749.1|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5 	ENSMUST00000170367.2|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr12_-_24096968_24096968	0.152984	Sox2	ENSMUST00000101538.3|9030624G23Rik|ENSMUSG00000073158.3|RIKEN cDNA 9030624G23 gene
mm10_v2_chr4_+_6191093_6191122	0.151356	Sox2	ENSMUST00000029907.5|Ubxn2b|ENSMUSG00000028243.5|UBX domain protein 2B
mm10_v2_chr12_-_34528844_34528904	0.151054	Sox2	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr18_+_34625009_34625033	0.150656	Sox2	ENSMUST00000166044.1|Kif20a|ENSMUSG00000003779.9|kinesin family member 20A
mm10_v2_chr2_+_68117713_68117713	0.150454	Sox2	ENSMUST00000112346.2|B3galt1|ENSMUSG00000034780.5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1
mm10_v2_chr1_+_42952872_42952983	0.150077	Sox2	ENSMUST00000179766.1|Gpr45|ENSMUSG00000041907.8|G protein-coupled receptor 45
mm10_v2_chr5_-_149636331_149636376	0.14959	Sox2	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr7_+_66109474_66109515	0.149142	Sox2	ENSMUST00000036372.6|Chsy1|ENSMUSG00000032640.9|chondroitin sulfate synthase 1
mm10_v2_chr3_-_107931579_107931742	0.148977	Sox2	ENSMUST00000133947.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000124215.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106688.1|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7 	ENSMUST00000106687.2|Gstm7|ENSMUSG00000004035.6|glutathione S-transferase, mu 7
mm10_v2_chr11_-_100613334_100613368	0.148893	Sox2	ENSMUST00000146840.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chr8_-_111910171_111910199	0.148284	Sox2	ENSMUST00000034430.4|Chst5|ENSMUSG00000031952.4|carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5
mm10_v2_chr2_+_181767040_181767073	0.145673	Sox2	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr13_+_13784278_13784365	0.144421	Sox2	ENSMUST00000021734.7|Gng4|ENSMUSG00000021303.7|guanine nucleotide binding protein (G protein), gamma 4
mm10_v2_chr9_+_69397933_69397972	0.144344	Sox2	ENSMUST00000117610.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000145538.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2 	ENSMUST00000117246.1|Narg2|ENSMUSG00000032235.9|NMDA receptor-regulated gene 2
mm10_v2_chr2_-_113758638_113758655	0.14406	Sox2	ENSMUST00000099575.3|Grem1|ENSMUSG00000074934.3|gremlin 1
mm10_v2_chr10_+_70440844_70440937	0.142468	Sox2	ENSMUST00000173042.1|Fam13c|ENSMUSG00000043259.8|family with sequence similarity 13, member C 	ENSMUST00000062883.6|Fam13c|ENSMUSG00000043259.8|family with sequence similarity 13, member C
mm10_v2_chr11_-_74897052_74897094	0.140905	Sox2	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr18_+_82914632_82914664	0.140756	Sox2	ENSMUST00000071233.6|Zfp516|ENSMUSG00000058881.6|zinc finger protein 516
mm10_v2_chr7_-_127615226_127615272	0.14053	Sox2	ENSMUST00000084564.3|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr2_-_26294550_26294561	0.139858	Sox2	ENSMUST00000057224.3|4932418E24Rik|ENSMUSG00000048038.6|RIKEN cDNA 4932418E24 gene
mm10_v2_chr5_+_64230285_64230312	0.139703	Sox2	ENSMUST00000119756.1|Tbc1d1|ENSMUSG00000029174.12|TBC1 domain family, member 1
mm10_v2_chr5_-_8622855_8622952	0.139018	Sox2	ENSMUST00000047485.8|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B 	ENSMUST00000115378.1|Rundc3b|ENSMUSG00000040570.8|RUN domain containing 3B
mm10_v2_chr5_-_50058908_50059010	0.138622	Sox2	ENSMUST00000030971.5|Gpr125|ENSMUSG00000029090.8|G protein-coupled receptor 125
mm10_v2_chr11_+_94044241_94044273	0.138474	Sox2	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr16_-_50432340_50432409	0.136162	Sox2	ENSMUST00000066037.6|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089399.4|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000089404.3|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000114477.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila) 	ENSMUST00000138166.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr13_-_98926374_98926389	0.134789	Sox2	ENSMUST00000109401.1|Tnpo1|ENSMUSG00000009470.10|transportin 1
mm10_v2_chr6_-_144209471_144209487	0.134174	Sox2	ENSMUST00000038815.7|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr11_+_101316917_101316977	0.13384	Sox2	ENSMUST00000151385.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr16_+_19760902_19761054	0.13322	Sox2	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr6_-_144209448_144209469	0.132707	Sox2	ENSMUST00000077160.5|Sox5|ENSMUSG00000041540.10|SRY-box containing gene 5
mm10_v2_chr1_+_81077204_81077252	0.13165	Sox2	ENSMUST00000123720.1|Nyap2|ENSMUSG00000054976.8|neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2
mm10_v2_chr19_+_8941865_8942050	0.131553	Sox2	ENSMUST00000096240.2|Mta2|ENSMUSG00000071646.3|metastasis-associated gene family, member 2
mm10_v2_chr2_-_28583239_28583279	0.130689	Sox2	ENSMUST00000028157.8|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr10_-_60831571_60831588	0.130384	Sox2	ENSMUST00000077925.5|Unc5b|ENSMUSG00000020099.7|unc-5 homolog B (C. elegans)
mm10_v2_chr2_+_32629467_32629514	0.129823	Sox2	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr5_+_104775911_104775911	0.129778	Sox2	ENSMUST00000055593.7|Gm8258|ENSMUSG00000048334.7|predicted gene 8258
mm10_v2_chr17_-_55712571_55712630	0.129431	Sox2	ENSMUST00000086876.5|Pot1b|ENSMUSG00000024174.8|protection of telomeres 1B
mm10_v2_chr8_+_127064107_127064347	0.129073	Sox2	ENSMUST00000162536.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000026921.6|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162665.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160766.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162602.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162531.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000160581.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000161355.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000159537.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr4_+_123016590_123016613	0.129038	Sox2	ENSMUST00000102649.3|Trit1|ENSMUSG00000028653.10|tRNA isopentenyltransferase 1
mm10_v2_chr2_-_28583189_28583230	0.128421	Sox2	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr5_+_148265265_148265305	0.128368	Sox2	ENSMUST00000071878.5|Mtus2|ENSMUSG00000029651.10|microtubule associated tumor suppressor candidate 2
mm10_v2_chr4_-_129696817_129696843	0.127649	Sox2	ENSMUST00000102588.3|Tmem39b|ENSMUSG00000053730.9|transmembrane protein 39b
mm10_v2_chr19_+_7417586_7417650	0.126944	Sox2	ENSMUST00000159348.1|2700081O15Rik|ENSMUSG00000053080.9|RIKEN cDNA 2700081O15 gene
mm10_v2_chr7_-_98361310_98361328	0.12617	Sox2	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr2_+_181767283_181767322	0.126019	Sox2	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr6_+_54040078_54040091	0.124795	Sox2	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr5_-_44099220_44099237	0.124489	Sox2	ENSMUST00000165909.1|Prom1|ENSMUSG00000029086.9|prominin 1
mm10_v2_chr17_+_32993123_32993201	0.124264	Sox2	ENSMUST00000087666.4|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952 	ENSMUST00000157017.1|Zfp952|ENSMUSG00000053390.9|zinc finger protein 952
mm10_v2_chr4_+_136172367_136172395	0.124115	Sox2	ENSMUST00000061721.5|E2f2|ENSMUSG00000018983.9|E2F transcription factor 2
mm10_v2_chr1_+_66364623_66364663	0.123991	Sox2	ENSMUST00000077355.5|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2 	ENSMUST00000114012.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr4_+_116558056_116558090	0.123102	Sox2	ENSMUST00000106475.1|Gpbp1l1|ENSMUSG00000034042.10|GC-rich promoter binding protein 1-like 1
mm10_v2_chr2_-_65567465_65567495	0.123094	Sox2	ENSMUST00000066432.5|Scn3a|ENSMUSG00000057182.8|sodium channel, voltage-gated, type III, alpha
mm10_v2_chr7_+_29307924_29308057	0.12044	Sox2	ENSMUST00000108230.1|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1 	ENSMUST00000065181.5|Dpf1|ENSMUSG00000030584.7|D4, zinc and double PHD fingers family 1
mm10_v2_chr10_-_60219260_60219295	0.118707	Sox2	ENSMUST00000135158.2|Chst3|ENSMUSG00000057337.7|carbohydrate (chondroitin 6/keratan) sulfotransferase 3
mm10_v2_chr6_-_56797637_56797757	0.118313	Sox2	ENSMUST00000114323.1|Kbtbd2|ENSMUSG00000059486.5|kelch repeat and BTB (POZ) domain containing 2
mm10_v2_chr16_+_31663841_31663912	0.115983	Sox2	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr9_+_21368014_21368027	0.115875	Sox2	ENSMUST00000067646.4|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3 	ENSMUST00000115414.1|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3
mm10_v2_chr12_+_111039334_111039400	0.115545	Sox2	ENSMUST00000084968.7|Rcor1|ENSMUSG00000037896.11|REST corepressor 1
mm10_v2_chr7_-_127615208_127615219	0.115148	Sox2	ENSMUST00000122066.1|Zfp629|ENSMUSG00000045639.8|zinc finger protein 629
mm10_v2_chr2_+_55437100_55437182	0.114998	Sox2	ENSMUST00000112633.2|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3 	ENSMUST00000112632.1|Kcnj3|ENSMUSG00000026824.5|potassium inwardly-rectifying channel, subfamily J, member 3
mm10_v2_chr6_+_17463927_17464071	0.114613	Sox2	ENSMUST00000115442.1|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr8_+_106415319_106415396	0.114528	Sox2	ENSMUST00000034382.7|Zfp90|ENSMUSG00000031907.8|zinc finger protein 90
mm10_v2_chr7_+_73375494_73375549	0.113944	Sox2	ENSMUST00000094312.5|Rgma|ENSMUSG00000070509.9|RGM domain family, member A 	ENSMUST00000119206.1|Rgma|ENSMUSG00000070509.9|RGM domain family, member A
mm10_v2_chr6_-_120493807_120493913	0.11343	Sox2	ENSMUST00000178687.1|Cecr6|ENSMUSG00000094626.1|cat eye syndrome chromosome region, candidate 6
mm10_v2_chr9_+_102720287_102720336	0.112877	Sox2	ENSMUST00000130602.1|Amotl2|ENSMUSG00000032531.9|angiomotin-like 2
mm10_v2_chr7_+_4925802_4925868	0.111301	Sox2	ENSMUST00000057612.7|Ssc5d|ENSMUSG00000035279.7|scavenger receptor cysteine rich domain containing (5 domains)
mm10_v2_chr5_-_9725305_9725352	0.110904	Sox2	ENSMUST00000004076.3|Grm3|ENSMUSG00000003974.5|glutamate receptor, metabotropic 3
mm10_v2_chr8_-_8660773_8660773	0.110328	Sox2	ENSMUST00000001319.7|Efnb2|ENSMUSG00000001300.9|ephrin B2
mm10_v2_chr13_-_13393592_13393624	0.109918	Sox2	ENSMUST00000021738.8|Gpr137b|ENSMUSG00000021306.10|G protein-coupled receptor 137B
mm10_v2_chr10_-_81060134_81060204	0.109525	Sox2	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr14_-_68655804_68655842	0.107032	Sox2	ENSMUST00000111072.1|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28 	ENSMUST00000022642.5|Adam28|ENSMUSG00000014725.8|a disintegrin and metallopeptidase domain 28
mm10_v2_chr19_-_37330613_37330613	0.104801	Sox2	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr16_+_78301458_78301496	0.104721	Sox2	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr2_+_28513243_28513326	0.104098	Sox2	ENSMUST00000028170.8|Ralgds|ENSMUSG00000026821.9|ral guanine nucleotide dissociation stimulator
mm10_v2_chr7_+_107370728_107370848	0.103876	Sox2	ENSMUST00000137663.1|Syt9|ENSMUSG00000062542.5|synaptotagmin IX 	ENSMUST00000073459.5|Syt9|ENSMUSG00000062542.5|synaptotagmin IX
mm10_v2_chr13_-_75943812_75943950	0.102799	Sox2	ENSMUST00000022078.5|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3 	ENSMUST00000109606.1|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3
mm10_v2_chr19_+_10688744_10688818	0.101658	Sox2	ENSMUST00000087951.5|Vps37c|ENSMUSG00000048832.8|vacuolar protein sorting 37C (yeast)
mm10_v2_chr9_-_50728067_50728129	0.100055	Sox2	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr5_-_114380505_114380520	0.0998609	Sox2	ENSMUST00000102581.4|Kctd10|ENSMUSG00000001098.9|potassium channel tetramerisation domain containing 10
mm10_v2_chr6_+_143167210_143167267	0.0993001	Sox2	ENSMUST00000032413.4|Etnk1|ENSMUSG00000030275.4|ethanolamine kinase 1
mm10_v2_chr8_-_11312731_11312826	0.0991098	Sox2	ENSMUST00000033898.9|Col4a1|ENSMUSG00000031502.9|collagen, type IV, alpha 1
mm10_v2_chr19_-_46327121_46327156	0.0973734	Sox2	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr6_+_48613180_48613180	0.0973101	Sox2	ENSMUST00000061720.4|Zfp775|ENSMUSG00000007216.4|zinc finger protein 775
mm10_v2_chr17_-_56935388_56935504	0.0967708	Sox2	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chr17_-_25273155_25273265	0.0966171	Sox2	ENSMUST00000173231.1|Ube2i|ENSMUSG00000015120.9|ubiquitin-conjugating enzyme E2I
mm10_v2_chr17_-_35000848_35000958	0.0965092	Sox2	ENSMUST00000166828.3|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr1_+_89070406_89070421	0.0952595	Sox2	ENSMUST00000066279.4|Sh3bp4|ENSMUSG00000036206.6|SH3-domain binding protein 4
mm10_v2_chr11_+_75679542_75679637	0.0950337	Sox2	ENSMUST00000147718.1|Crk|ENSMUSG00000017776.9|v-crk sarcoma virus CT10 oncogene homolog (avian)
mm10_v2_chr2_-_151009364_151009398	0.0949866	Sox2	ENSMUST00000109896.1|Ninl|ENSMUSG00000068115.7|ninein-like
mm10_v2_chr10_+_80329953_80329987	0.0947754	Sox2	ENSMUST00000105358.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105357.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105354.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6 	ENSMUST00000105355.1|Reep6|ENSMUSG00000035504.10|receptor accessory protein 6
mm10_v2_chrX_-_38576189_38576204	0.0946473	Sox2	ENSMUST00000115118.1|Cul4b|ENSMUSG00000031095.9|cullin 4B
mm10_v2_chr7_+_99466004_99466032	0.0926404	Sox2	ENSMUST00000037359.2|Klhl35|ENSMUSG00000035298.2|kelch-like 35
mm10_v2_chr17_+_53566971_53567023	0.0920141	Sox2	ENSMUST00000000724.8|Kat2b|ENSMUSG00000000708.8|K(lysine) acetyltransferase 2B
mm10_v2_chr7_-_16874845_16874889	0.0913486	Sox2	ENSMUST00000181501.1|9330104G04Rik|ENSMUSG00000097842.1|RIKEN cDNA 9330104G04 gene
mm10_v2_chr17_-_35838208_35838243	0.0901579	Sox2	ENSMUST00000134978.2|Tubb5|ENSMUSG00000001525.9|tubulin, beta 5 class I
mm10_v2_chr7_+_45785331_45785390	0.0900232	Sox2	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr1_-_51915901_51915958	0.0897834	Sox2	ENSMUST00000018561.7|Myo1b|ENSMUSG00000018417.8|myosin IB 	ENSMUST00000114537.2|Myo1b|ENSMUSG00000018417.8|myosin IB
mm10_v2_chr2_-_26910569_26910677	0.0896954	Sox2	ENSMUST00000015920.5|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000139815.1|Med22|ENSMUSG00000015776.6|mediator complex subunit 22 	ENSMUST00000102899.3|Med22|ENSMUSG00000015776.6|mediator complex subunit 22
mm10_v2_chr2_-_37443096_37443178	0.0883612	Sox2	ENSMUST00000102789.2|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000067043.4|Zbtb26|ENSMUSG00000050714.8|zinc finger and BTB domain containing 26 	ENSMUST00000112932.1|Zbtb6|ENSMUSG00000066798.3|zinc finger and BTB domain containing 6
mm10_v2_chr3_-_57847478_57847610	0.0865164	Sox2	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr17_+_21733704_21733724	0.0853999	Sox2	ENSMUST00000183192.1|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229 	ENSMUST00000065871.7|Zfp229|ENSMUSG00000061544.7|zinc finger protein 229
mm10_v2_chr12_-_112673944_112674086	0.0852187	Sox2	ENSMUST00000130342.1|Akt1|ENSMUSG00000001729.8|thymoma viral proto-oncogene 1
mm10_v2_chr12_-_40248073_40248086	0.0839	Sox2	ENSMUST00000169926.1|Ifrd1|ENSMUSG00000001627.5|interferon-related developmental regulator 1
mm10_v2_chrX_-_23365044_23365090	0.0833271	Sox2	ENSMUST00000115313.1|Klhl13|ENSMUSG00000036782.7|kelch-like 13
mm10_v2_chr5_-_122988533_122988705	0.0830804	Sox2	ENSMUST00000086200.4|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B 	ENSMUST00000156474.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr6_+_134035691_134035717	0.0819843	Sox2	ENSMUST00000081028.6|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene) 	ENSMUST00000111963.1|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene)
mm10_v2_chr18_+_4994600_4994623	0.0801482	Sox2	ENSMUST00000140448.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr11_-_87074055_87074071	0.0797789	Sox2	ENSMUST00000020804.7|Gdpd1|ENSMUSG00000061666.6|glycerophosphodiester phosphodiesterase domain containing 1
mm10_v2_chr1_+_139454747_139454825	0.079746	Sox2	ENSMUST00000053364.8|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila) 	ENSMUST00000097554.3|Aspm|ENSMUSG00000033952.8|asp (abnormal spindle)-like, microcephaly associated (Drosophila)
mm10_v2_chr10_-_127311740_127311786	0.07776	Sox2	ENSMUST00000037290.5|Mars|ENSMUSG00000040354.8|methionine-tRNA synthetase 	ENSMUST00000171564.1|Mars|ENSMUSG00000040354.8|methionine-tRNA synthetase
mm10_v2_chr1_-_33814516_33814576	0.076536	Sox2	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr13_+_56702983_56703112	0.074765	Sox2	ENSMUST00000069557.7|Smad5|ENSMUSG00000021540.10|SMAD family member 5 	ENSMUST00000109876.1|Smad5|ENSMUSG00000021540.10|SMAD family member 5
mm10_v2_chr9_+_45906513_45906569	0.0740214	Sox2	ENSMUST00000039059.6|Pcsk7|ENSMUSG00000035382.8|proprotein convertase subtilisin/kexin type 7
mm10_v2_chr5_-_110387090_110387154	0.0735456	Sox2	ENSMUST00000056124.6|Fbrsl1|ENSMUSG00000043323.10|fibrosin-like 1
mm10_v2_chr1_+_181150926_181150984	0.0729978	Sox2	ENSMUST00000134115.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila) 	ENSMUST00000111059.1|Cnih4|ENSMUSG00000062169.7|cornichon homolog 4 (Drosophila)
mm10_v2_chr14_+_70554056_70554056	0.0719371	Sox2	ENSMUST00000022691.7|Hr|ENSMUSG00000022096.8|hairless
mm10_v2_chrX_+_153498202_153498232	0.0707983	Sox2	ENSMUST00000060714.8|Ubqln2|ENSMUSG00000050148.8|ubiquilin 2
mm10_v2_chr18_-_15403680_15403687	0.0705732	Sox2	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr13_-_97747399_97747414	0.0704453	Sox2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr4_-_81442756_81442836	0.0697243	Sox2	ENSMUST00000107262.1|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein 	ENSMUST00000102830.3|Mpdz|ENSMUSG00000028402.11|multiple PDZ domain protein
mm10_v2_chr9_+_57825918_57825945	0.0694565	Sox2	ENSMUST00000165858.1|Gm17231|ENSMUSG00000091908.1|predicted gene 17231
mm10_v2_chr8_+_94810446_94810461	0.0687034	Sox2	ENSMUST00000034232.1|Ccl17|ENSMUSG00000031780.1|chemokine (C-C motif) ligand 17
mm10_v2_chr11_+_60699718_60699750	0.068662	Sox2	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr12_-_119238794_119238863	0.0684631	Sox2	ENSMUST00000026360.8|Itgb8|ENSMUSG00000025321.8|integrin beta 8
mm10_v2_chr10_-_128645965_128645991	0.0666189	Sox2	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr16_+_17070127_17070215	0.0663663	Sox2	ENSMUST00000115729.1|Ypel1|ENSMUSG00000022773.10|yippee-like 1 (Drosophila)
mm10_v2_chr5_-_142905816_142905832	0.0658916	Sox2	ENSMUST00000171419.1|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr11_-_72795801_72795856	0.0646414	Sox2	ENSMUST00000079681.5|Cyb5d2|ENSMUSG00000057778.8|cytochrome b5 domain containing 2
mm10_v2_chr18_+_68300351_68300422	0.0642343	Sox2	ENSMUST00000009679.4|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000131075.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000025427.7|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase 	ENSMUST00000139111.1|Rnmt|ENSMUSG00000009535.7|RNA (guanine-7-) methyltransferase
mm10_v2_chr4_+_101647763_101647797	0.063317	Sox2	ENSMUST00000106927.1|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr4_-_151996113_151996258	0.0607685	Sox2	ENSMUST00000055688.9|Phf13|ENSMUSG00000047777.9|PHD finger protein 13
mm10_v2_chr1_-_37536232_37536236	0.0601945	Sox2	ENSMUST00000042161.8|Mgat4a|ENSMUSG00000026110.9|mannoside acetylglucosaminyltransferase 4, isoenzyme A
mm10_v2_chr17_-_28486082_28486149	0.0599542	Sox2	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr2_-_168741752_168741800	0.0593522	Sox2	ENSMUST00000029060.4|Atp9a|ENSMUSG00000027546.9|ATPase, class II, type 9A
mm10_v2_chr11_+_20631956_20632006	0.0590064	Sox2	ENSMUST00000109586.2|Sertad2|ENSMUSG00000049800.7|SERTA domain containing 2
mm10_v2_chr11_+_6546899_6546941	0.0582725	Sox2	ENSMUST00000159007.1|Ccm2|ENSMUSG00000000378.9|cerebral cavernous malformation 2
mm10_v2_chr7_+_127470354_127470371	0.0582289	Sox2	ENSMUST00000106292.1|Prr14|ENSMUSG00000030822.9|proline rich 14
mm10_v2_chr12_+_24708984_24709029	0.0579869	Sox2	ENSMUST00000154588.1|Rrm2|ENSMUSG00000020649.5|ribonucleotide reductase M2
mm10_v2_chr4_-_132212255_132212303	0.0559834	Sox2	ENSMUST00000152796.1|Ythdf2|ENSMUSG00000040025.11|YTH domain family 2
mm10_v2_chr10_-_57532489_57532530	0.0552568	Sox2	ENSMUST00000020027.4|Serinc1|ENSMUSG00000019877.4|serine incorporator 1
mm10_v2_chr11_+_95010277_95010293	0.055094	Sox2	ENSMUST00000124735.1|Samd14|ENSMUSG00000047181.6|sterile alpha motif domain containing 14
mm10_v2_chr8_+_65967157_65967191	0.0538416	Sox2	ENSMUST00000072482.6|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr6_-_137649211_137649294	0.0531249	Sox2	ENSMUST00000134630.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000058210.6|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8 	ENSMUST00000111878.1|Eps8|ENSMUSG00000015766.8|epidermal growth factor receptor pathway substrate 8
mm10_v2_chr11_+_101316200_101316275	0.0524289	Sox2	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr11_+_4883186_4883222	0.0520177	Sox2	ENSMUST00000139737.1|Nipsnap1|ENSMUSG00000034285.9|4-nitrophenylphosphatase domain and non-neuronal SNAP25-like protein homolog 1 (C. elegans)
mm10_v2_chr2_-_39190687_39190746	0.0503278	Sox2	ENSMUST00000142872.1|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion 	ENSMUST00000038874.5|Scai|ENSMUSG00000035236.11|suppressor of cancer cell invasion
mm10_v2_chr8_-_67974567_67974596	0.0497615	Sox2	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr17_+_72918298_72918316	0.0488744	Sox2	ENSMUST00000024857.6|Lbh|ENSMUSG00000024063.6|limb-bud and heart
mm10_v2_chr3_-_86999284_86999441	0.0484673	Sox2	ENSMUST00000063869.5|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen 	ENSMUST00000029717.2|Cd1d1|ENSMUSG00000028076.6|CD1d1 antigen
mm10_v2_chrX_+_161717498_161717627	0.0476103	Sox2	ENSMUST00000061514.7|Rai2|ENSMUSG00000043518.7|retinoic acid induced 2
mm10_v2_chr7_+_139248477_139248532	0.0467319	Sox2	ENSMUST00000093993.3|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B 	ENSMUST00000172136.1|Pwwp2b|ENSMUSG00000060260.6|PWWP domain containing 2B
mm10_v2_chr6_-_29507946_29507974	0.0463041	Sox2	ENSMUST00000101614.3|Kcp|ENSMUSG00000059022.8|kielin/chordin-like protein 	ENSMUST00000078112.6|Kcp|ENSMUSG00000059022.8|kielin/chordin-like protein
mm10_v2_chr5_-_106696530_106696650	0.0462014	Sox2	ENSMUST00000137285.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000124263.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000112695.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000155495.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644 	ENSMUST00000135108.1|Zfp644|ENSMUSG00000049606.10|zinc finger protein 644
mm10_v2_chr7_+_4915202_4915230	0.0458769	Sox2	ENSMUST00000116354.2|Zfp628|ENSMUSG00000074406.4|zinc finger protein 628
mm10_v2_chr2_+_163438455_163438536	0.0457994	Sox2	ENSMUST00000109420.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000109421.3|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000018087.6|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1 	ENSMUST00000137070.1|Gdap1l1|ENSMUSG00000017943.9|ganglioside-induced differentiation-associated protein 1-like 1
mm10_v2_chr9_+_4383535_4383535	0.0407981	Sox2	ENSMUST00000047173.9|Msantd4|ENSMUSG00000041124.10|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
mm10_v2_chr9_-_72111651_72111712	0.0407457	Sox2	ENSMUST00000185117.1|Tcf12|ENSMUSG00000032228.10|transcription factor 12
mm10_v2_chr4_+_155839724_155839762	0.0404391	Sox2	ENSMUST00000030947.3|Mxra8|ENSMUSG00000029070.3|matrix-remodelling associated 8
mm10_v2_chr3_+_13946368_13946379	0.0379674	Sox2	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr13_+_88821472_88821520	0.0365866	Sox2	ENSMUST00000118731.1|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3 	ENSMUST00000081769.6|Edil3|ENSMUSG00000034488.8|EGF-like repeats and discoidin I-like domains 3
mm10_v2_chr1_+_9601163_9601256	0.0360996	Sox2	ENSMUST00000088666.3|3110035E14Rik|ENSMUSG00000067879.3|RIKEN cDNA 3110035E14 gene
mm10_v2_chr11_+_60699758_60699845	0.0357427	Sox2	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr10_+_90576708_90576766	0.0335659	Sox2	ENSMUST00000182430.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182960.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182045.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182083.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr15_-_98534221_98534305	0.032871	Sox2	ENSMUST00000116400.2|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2 	ENSMUST00000023727.10|Kansl2|ENSMUSG00000022992.10|KAT8 regulatory NSL complex subunit 2
mm10_v2_chr10_-_81025406_81025411	0.0327525	Sox2	ENSMUST00000055125.4|Diras1|ENSMUSG00000043670.4|DIRAS family, GTP-binding RAS-like 1
mm10_v2_chr2_+_156721037_156721062	0.0327446	Sox2	ENSMUST00000109566.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000146412.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000177013.1|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila) 	ENSMUST00000171030.2|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr2_+_156721340_156721492	0.0316752	Sox2	ENSMUST00000099145.5|Dlgap4|ENSMUSG00000061689.9|discs, large homolog-associated protein 4 (Drosophila)
mm10_v2_chr4_+_106911517_106911667	0.0315281	Sox2	ENSMUST00000072753.6|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3 	ENSMUST00000097934.3|Ssbp3|ENSMUSG00000061887.8|single-stranded DNA binding protein 3
mm10_v2_chr11_+_80383397_80383415	0.0298067	Sox2	ENSMUST00000053740.8|Zfp207|ENSMUSG00000017421.12|zinc finger protein 207
mm10_v2_chr8_+_92827273_92827395	0.0294773	Sox2	ENSMUST00000034187.7|Mmp2|ENSMUSG00000031740.7|matrix metallopeptidase 2
mm10_v2_chr11_-_120572822_120572842	0.0283116	Sox2	ENSMUST00000168360.1|P4hb|ENSMUSG00000025130.5|prolyl 4-hydroxylase, beta polypeptide
mm10_v2_chr6_-_39557830_39557867	0.0278913	Sox2	ENSMUST00000036877.3|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A 	ENSMUST00000154149.1|Dennd2a|ENSMUSG00000038456.3|DENN/MADD domain containing 2A
mm10_v2_chr4_+_101647712_101647736	0.0273709	Sox2	ENSMUST00000030254.8|Leprot|ENSMUSG00000035212.8|leptin receptor overlapping transcript
mm10_v2_chr1_+_155158703_155158776	0.0272049	Sox2	ENSMUST00000027743.7|Stx6|ENSMUSG00000026470.9|syntaxin 6
mm10_v2_chr16_-_8672145_8672161	0.0270122	Sox2	ENSMUST00000008537.8|Carhsp1|ENSMUSG00000008393.8|calcium regulated heat stable protein 1
mm10_v2_chr15_-_72034202_72034227	0.0267688	Sox2	ENSMUST00000159993.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr11_-_106750628_106750660	0.0253142	Sox2	ENSMUST00000068021.2|Pecam1|ENSMUSG00000020717.13|platelet/endothelial cell adhesion molecule 1
mm10_v2_chr4_-_14621669_14621786	0.0236644	Sox2	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr1_+_153749414_153749442	0.0221041	Sox2	ENSMUST00000086209.3|Rnasel|ENSMUSG00000066800.5|ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)
mm10_v2_chr7_+_30095150_30095192	0.0211855	Sox2	ENSMUST00000130526.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260 	ENSMUST00000108200.1|Zfp260|ENSMUSG00000049421.7|zinc finger protein 260
mm10_v2_chr2_-_132578128_132578153	0.0206902	Sox2	ENSMUST00000028822.7|Gpcpd1|ENSMUSG00000027346.9|glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
mm10_v2_chr11_-_62789402_62789443	0.0197855	Sox2	ENSMUST00000108705.1|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr17_+_35866056_35866085	0.0196886	Sox2	ENSMUST00000122899.1|Ppp1r18|ENSMUSG00000034595.11|protein phosphatase 1, regulatory subunit 18
mm10_v2_chr18_+_56707725_56707940	0.0194878	Sox2	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr2_-_153241402_153241426	0.0191517	Sox2	ENSMUST00000056924.7|Plagl2|ENSMUSG00000051413.11|pleiomorphic adenoma gene-like 2
mm10_v2_chr5_+_115429944_115429997	0.0181453	Sox2	ENSMUST00000067168.5|Msi1|ENSMUSG00000054256.5|musashi RNA-binding protein 1
mm10_v2_chr5_+_142960343_142960363	0.0179581	Sox2	ENSMUST00000031565.8|Fscn1|ENSMUSG00000029581.8|fascin homolog 1, actin bundling protein (Strongylocentrotus purpuratus)
mm10_v2_chr19_-_45783512_45783558	0.0173259	Sox2	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr8_-_77724426_77724483	0.0169983	Sox2	ENSMUST00000034029.7|Ednra|ENSMUSG00000031616.7|endothelin receptor type A
mm10_v2_chr10_-_84533884_84533896	0.0163326	Sox2	ENSMUST00000053871.3|Ckap4|ENSMUSG00000046841.4|cytoskeleton-associated protein 4
mm10_v2_chr11_-_87108656_87108719	0.016217	Sox2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr1_-_136260873_136260931	0.0153542	Sox2	ENSMUST00000086395.5|Gpr25|ENSMUSG00000052759.6|G protein-coupled receptor 25
mm10_v2_chr19_+_6363671_6363704	0.0117764	Sox2	ENSMUST00000131252.1|Sf1|ENSMUSG00000024949.11|splicing factor 1
mm10_v2_chr11_-_72796028_72796142	0.0109204	Sox2	ENSMUST00000156294.1|Cyb5d2|ENSMUSG00000057778.8|cytochrome b5 domain containing 2
mm10_v2_chr4_-_43045686_43045825	0.0108337	Sox2	ENSMUST00000107956.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B 	ENSMUST00000107957.1|Fam214b|ENSMUSG00000036002.6|family with sequence similarity 214, member B
mm10_v2_chr1_-_16520106_16520133	0.0101328	Sox2	ENSMUST00000162435.1|Stau2|ENSMUSG00000025920.13|staufen (RNA binding protein) homolog 2 (Drosophila)
mm10_v2_chr10_-_81627797_81627797	0.00997799	Sox2	ENSMUST00000042923.8|Sirt6|ENSMUSG00000034748.10|sirtuin 6
mm10_v2_chr11_-_31370066_31370080	0.00931673	Sox2	ENSMUST00000020546.2|Stc2|ENSMUSG00000020303.2|stanniocalcin 2
mm10_v2_chr9_+_77917364_77917386	0.00915751	Sox2	ENSMUST00000034904.7|Elovl5|ENSMUSG00000032349.7|ELOVL family member 5, elongation of long chain fatty acids (yeast)
mm10_v2_chr13_+_55635002_55635036	0.00911067	Sox2	ENSMUST00000172272.1|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 	ENSMUST00000099479.3|Ddx46|ENSMUSG00000021500.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
mm10_v2_chr6_+_28215555_28215576	0.00889472	Sox2	ENSMUST00000143099.1|6530409C15Rik|ENSMUSG00000043340.3|RIKEN cDNA 6530409C15 gene 	ENSMUST00000143551.1|6530409C15Rik|ENSMUSG00000043340.3|RIKEN cDNA 6530409C15 gene
mm10_v2_chr11_-_102447647_102447682	0.0087069	Sox2	ENSMUST00000049057.4|Fam171a2|ENSMUSG00000034685.4|family with sequence similarity 171, member A2
mm10_v2_chr14_+_27039001_27039050	0.00631972	Sox2	ENSMUST00000035336.3|Il17rd|ENSMUSG00000040717.5|interleukin 17 receptor D
mm10_v2_chr10_-_82622926_82623137	0.00603242	Sox2	ENSMUST00000176200.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene 	ENSMUST00000183416.1|1190007I07Rik|ENSMUSG00000063320.5|RIKEN cDNA 1190007I07 gene
mm10_v2_chr7_-_126475082_126475130	0.00592287	Sox2	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr10_+_36974558_36974579	0.00559539	Sox2	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr6_+_125039760_125039859	0.00558063	Sox2	ENSMUST00000140131.1|Ing4|ENSMUSG00000030330.9|inhibitor of growth family, member 4 	ENSMUST00000032480.7|Ing4|ENSMUSG00000030330.9|inhibitor of growth family, member 4
mm10_v2_chr5_-_30105359_30105359	0.00488597	Sox2	ENSMUST00000127749.3|3110082J24Rik|ENSMUSG00000086815.3|RIKEN cDNA 3110082J24 gene
mm10_v2_chr8_-_40634776_40634806	0.00469084	Sox2	ENSMUST00000048898.10|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7 	ENSMUST00000174205.1|Mtmr7|ENSMUSG00000039431.10|myotubularin related protein 7
mm10_v2_chr2_+_167015193_167015336	0.00436005	Sox2	ENSMUST00000018143.9|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000176066.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 	ENSMUST00000150571.1|Ddx27|ENSMUSG00000017999.10|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
mm10_v2_chr15_-_50882806_50882822	0.00415864	Sox2	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr17_+_55445550_55445701	0.00365462	Sox2	ENSMUST00000025000.3|St6gal2|ENSMUSG00000024172.4|beta galactoside alpha 2,6 sialyltransferase 2
mm10_v2_chr5_-_111761697_111761727	0.00103295	Sox2	ENSMUST00000129146.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000137398.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene 	ENSMUST00000129065.1|E130006D01Rik|ENSMUSG00000085271.1|RIKEN cDNA E130006D01 gene
mm10_v2_chrX_-_105929397_105929408	0.000892425	Sox2	ENSMUST00000113573.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human) 	ENSMUST00000130980.1|Atrx|ENSMUSG00000031229.10|alpha thalassemia/mental retardation syndrome X-linked homolog (human)
