mm10_v2_chr5_+_139543889_139543904	1.65531	Clock	ENSMUST00000174792.1|Uncx|ENSMUSG00000029546.11|UNC homeobox 	ENSMUST00000031523.8|Uncx|ENSMUSG00000029546.11|UNC homeobox
mm10_v2_chr7_-_144939823_144939869	1.55627	Clock	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr5_-_22344690_22344710	1.30097	Clock	ENSMUST00000062372.7|Reln|ENSMUSG00000042453.8|reelin 	ENSMUST00000161356.1|Reln|ENSMUSG00000042453.8|reelin
mm10_v2_chr6_-_49214954_49215022	1.23731	Clock	ENSMUST00000031838.7|Igf2bp3|ENSMUSG00000029814.8|insulin-like growth factor 2 mRNA binding protein 3
mm10_v2_chr2_+_164769892_164769903	1.04937	Clock	ENSMUST00000088248.6|Ube2c|ENSMUSG00000001403.7|ubiquitin-conjugating enzyme E2C 	ENSMUST00000001439.6|Ube2c|ENSMUSG00000001403.7|ubiquitin-conjugating enzyme E2C
mm10_v2_chr1_-_75219245_75219262	0.976628	Clock	ENSMUST00000079464.6|Tuba4a|ENSMUSG00000026202.7|tubulin, alpha 4A
mm10_v2_chr14_-_20181773_20181790	0.940867	Clock	ENSMUST00000024011.8|Kcnk5|ENSMUSG00000023243.8|potassium channel, subfamily K, member 5
mm10_v2_chr5_+_93093428_93093457	0.854028	Clock	ENSMUST00000074733.7|Sept11|ENSMUSG00000058013.8|septin 11
mm10_v2_chr15_+_39076885_39076938	0.829073	Clock	ENSMUST00000067072.3|Cthrc1|ENSMUSG00000054196.6|collagen triple helix repeat containing 1
mm10_v2_chr11_+_101316200_101316275	0.824887	Clock	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr11_+_101316917_101316977	0.823718	Clock	ENSMUST00000151385.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr1_-_12991109_12991177	0.802797	Clock	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr4_-_97778042_97778071	0.779595	Clock	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr16_+_32608973_32608990	0.700955	Clock	ENSMUST00000120680.1|Tfrc|ENSMUSG00000022797.9|transferrin receptor
mm10_v2_chr4_-_133756769_133756794	0.688855	Clock	ENSMUST00000008024.6|Arid1a|ENSMUSG00000007880.10|AT rich interactive domain 1A (SWI-like)
mm10_v2_chr8_+_58912257_58912257	0.664687	Clock	ENSMUST00000160055.1|BC030500|ENSMUSG00000049946.7|cDNA sequence BC030500
mm10_v2_chr6_-_47813512_47813528	0.651186	Clock	ENSMUST00000077290.7|Pdia4|ENSMUSG00000025823.8|protein disulfide isomerase associated 4
mm10_v2_chr11_+_94629741_94629834	0.632499	Clock	ENSMUST00000021239.6|Lrrc59|ENSMUSG00000020869.8|leucine rich repeat containing 59
mm10_v2_chr4_-_57143437_57143624	0.623113	Clock	ENSMUST00000095076.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b 	ENSMUST00000030142.3|Epb4.1l4b|ENSMUSG00000028434.6|erythrocyte protein band 4.1-like 4b
mm10_v2_chr4_-_97584605_97584610	0.62306	Clock	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr5_+_146231211_146231385	0.622299	Clock	ENSMUST00000161181.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000161652.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000031640.8|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8 	ENSMUST00000159467.1|Cdk8|ENSMUSG00000029635.9|cyclin-dependent kinase 8
mm10_v2_chr5_-_76951560_76951589	0.607917	Clock	ENSMUST00000140076.1|Ppat|ENSMUSG00000029246.8|phosphoribosyl pyrophosphate amidotransferase
mm10_v2_chr1_-_82291370_82291416	0.60719	Clock	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chr12_+_59131473_59131502	0.607131	Clock	ENSMUST00000177162.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr9_-_106891401_106891438	0.601776	Clock	ENSMUST00000069036.7|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor
mm10_v2_chr4_-_97584612_97584643	0.585077	Clock	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr15_+_72913357_72913357	0.583459	Clock	ENSMUST00000166418.2|Gm3150|ENSMUSG00000096173.1|predicted gene 3150
mm10_v2_chr9_-_110654161_110654212	0.547783	Clock	ENSMUST00000133191.1|Nbeal2|ENSMUSG00000056724.8|neurobeachin-like 2 	ENSMUST00000167320.1|Nbeal2|ENSMUSG00000056724.8|neurobeachin-like 2
mm10_v2_chr12_+_59131286_59131469	0.539046	Clock	ENSMUST00000176464.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000170992.2|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176322.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr15_-_43170809_43170834	0.530256	Clock	ENSMUST00000063492.6|Rspo2|ENSMUSG00000051920.6|R-spondin 2 homolog (Xenopus laevis)
mm10_v2_chr11_-_100759942_100760011	0.528342	Clock	ENSMUST00000107363.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr2_-_130906338_130906406	0.526935	Clock	ENSMUST00000146975.1|4930402H24Rik|ENSMUSG00000027309.12|RIKEN cDNA 4930402H24 gene
mm10_v2_chr10_+_22158566_22158586	0.500091	Clock	ENSMUST00000181645.1|Raet1e|ENSMUSG00000053219.9|retinoic acid early transcript 1E 	ENSMUST00000105522.2|H60b|ENSMUSG00000075297.4|histocompatibility 60b
mm10_v2_chr11_-_17211504_17211573	0.473786	Clock	ENSMUST00000020317.7|Pno1|ENSMUSG00000020116.7|partner of NOB1 homolog (S. cerevisiae)
mm10_v2_chr10_+_36974558_36974579	0.458005	Clock	ENSMUST00000105510.1|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr2_+_160645881_160645896	0.447601	Clock	ENSMUST00000109468.2|Top1|ENSMUSG00000070544.6|topoisomerase (DNA) I
mm10_v2_chrX_-_48208566_48208691	0.441572	Clock	ENSMUST00000037960.4|Zdhhc9|ENSMUSG00000036985.6|zinc finger, DHHC domain containing 9
mm10_v2_chr9_-_114781986_114781998	0.435994	Clock	ENSMUST00000035009.8|Cmtm7|ENSMUSG00000032436.10|CKLF-like MARVEL transmembrane domain containing 7 	ENSMUST00000084867.7|Cmtm7|ENSMUSG00000032436.10|CKLF-like MARVEL transmembrane domain containing 7
mm10_v2_chr11_-_100759740_100759754	0.429822	Clock	ENSMUST00000107361.2|Kcnh4|ENSMUSG00000035355.9|potassium voltage-gated channel, subfamily H (eag-related), member 4
mm10_v2_chr16_-_45158453_45158520	0.420446	Clock	ENSMUST00000181750.1|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr11_-_76217490_76217664	0.420201	Clock	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chr9_-_48480540_48480640	0.420072	Clock	ENSMUST00000034524.3|Rexo2|ENSMUSG00000032026.6|REX2, RNA exonuclease 2 homolog (S. cerevisiae)
mm10_v2_chr17_-_35000848_35000958	0.393036	Clock	ENSMUST00000166828.3|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr2_+_18055203_18055237	0.377286	Clock	ENSMUST00000028076.8|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr1_-_52499980_52499980	0.376043	Clock	ENSMUST00000164747.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr17_-_35000746_35000801	0.369131	Clock	ENSMUST00000163360.1|D17H6S56E-5|ENSMUSG00000091747.3|DNA segment, Chr 17, human D6S56E 5
mm10_v2_chr4_+_132274385_132274433	0.360284	Clock	ENSMUST00000105963.1|Taf12|ENSMUSG00000028899.5|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr2_+_115581667_115581743	0.350596	Clock	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr14_-_118706180_118706234	0.345918	Clock	ENSMUST00000036554.6|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4 	ENSMUST00000166646.1|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm10_v2_chr4_-_132075250_132075292	0.334519	Clock	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr12_+_69372112_69372172	0.320816	Clock	ENSMUST00000050063.7|Arf6|ENSMUSG00000044147.7|ADP-ribosylation factor 6
mm10_v2_chr12_+_71136848_71136848	0.320285	Clock	ENSMUST00000149564.1|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene 	ENSMUST00000045907.8|2700049A03Rik|ENSMUSG00000034601.10|RIKEN cDNA 2700049A03 gene
mm10_v2_chr17_-_47611449_47611544	0.309646	Clock	ENSMUST00000024783.8|Bysl|ENSMUSG00000023988.8|bystin-like
mm10_v2_chr11_-_47379405_47379522	0.305875	Clock	ENSMUST00000077221.5|Sgcd|ENSMUSG00000020354.9|sarcoglycan, delta (dystrophin-associated glycoprotein)
mm10_v2_chr7_-_68749170_68749241	0.304623	Clock	ENSMUST00000118110.1|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4 	ENSMUST00000048068.7|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4
mm10_v2_chr11_+_74830920_74831005	0.303119	Clock	ENSMUST00000000291.2|Mnt|ENSMUSG00000000282.6|max binding protein
mm10_v2_chr7_-_29505447_29505473	0.301706	Clock	ENSMUST00000183096.1|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3 	ENSMUST00000085809.4|Sipa1l3|ENSMUSG00000030583.10|signal-induced proliferation-associated 1 like 3
mm10_v2_chr9_+_58134017_58134075	0.299577	Clock	ENSMUST00000134955.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000147134.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000170397.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chrX_-_95444789_95444872	0.296471	Clock	ENSMUST00000084535.5|Amer1|ENSMUSG00000050332.7|APC membrane recruitment 1
mm10_v2_chr9_+_44326804_44326896	0.296204	Clock	ENSMUST00000054708.3|Dpagt1|ENSMUSG00000032123.4|dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
mm10_v2_chr9_+_40801235_40801302	0.295361	Clock	ENSMUST00000117870.1|Hspa8|ENSMUSG00000015656.10|heat shock protein 8 	ENSMUST00000117557.1|Hspa8|ENSMUSG00000015656.10|heat shock protein 8
mm10_v2_chr17_-_45573253_45573272	0.291721	Clock	ENSMUST00000165127.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1 	ENSMUST00000166469.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1 	ENSMUST00000024739.7|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1
mm10_v2_chr10_+_36974536_36974556	0.290399	Clock	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr5_+_76951307_76951368	0.288604	Clock	ENSMUST00000031160.9|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 	ENSMUST00000120912.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 	ENSMUST00000117536.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm10_v2_chr1_+_59684949_59685023	0.279561	Clock	ENSMUST00000027174.3|Nop58|ENSMUSG00000026020.3|NOP58 ribonucleoprotein
mm10_v2_chr10_-_127522428_127522454	0.277741	Clock	ENSMUST00000026470.4|Shmt2|ENSMUSG00000025403.4|serine hydroxymethyltransferase 2 (mitochondrial)
mm10_v2_chr4_+_132274369_132274383	0.270151	Clock	ENSMUST00000030731.4|Taf12|ENSMUSG00000028899.5|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
mm10_v2_chr11_-_51756378_51756618	0.26933	Clock	ENSMUST00000109092.1|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000064297.4|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae) 	ENSMUST00000109097.2|Sec24a|ENSMUSG00000036391.10|Sec24 related gene family, member A (S. cerevisiae)
mm10_v2_chr16_-_45158566_45158612	0.264899	Clock	ENSMUST00000181177.1|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr6_+_125096145_125096162	0.257657	Clock	ENSMUST00000112390.1|Chd4|ENSMUSG00000063870.6|chromodomain helicase DNA binding protein 4
mm10_v2_chr3_+_41564880_41564933	0.252964	Clock	ENSMUST00000168086.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr18_+_35553401_35553421	0.252752	Clock	ENSMUST00000181664.1|Snhg4|ENSMUSG00000097769.1|small nucleolar RNA host gene 4 (non-protein coding)
mm10_v2_chrX_+_56786527_56786564	0.250727	Clock	ENSMUST00000144600.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr16_-_45158183_45158286	0.249762	Clock	ENSMUST00000114600.1|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr19_+_41981709_41981778	0.248123	Clock	ENSMUST00000026170.1|Ubtd1|ENSMUSG00000025171.1|ubiquitin domain containing 1
mm10_v2_chr2_+_83644435_83644490	0.240518	Clock	ENSMUST00000081591.6|Zc3h15|ENSMUSG00000027091.8|zinc finger CCCH-type containing 15
mm10_v2_chr11_-_70982987_70983026	0.235523	Clock	ENSMUST00000078528.6|C1qbp|ENSMUSG00000018446.8|complement component 1, q subcomponent binding protein
mm10_v2_chr16_+_94085226_94085260	0.227198	Clock	ENSMUST00000072182.7|Sim2|ENSMUSG00000062713.7|single-minded homolog 2 (Drosophila)
mm10_v2_chr15_-_10714612_10714637	0.22674	Clock	ENSMUST00000169385.1|Rai14|ENSMUSG00000022246.7|retinoic acid induced 14
mm10_v2_chr4_+_123282778_123282911	0.215596	Clock	ENSMUST00000106243.1|Pabpc4|ENSMUSG00000011257.13|poly(A) binding protein, cytoplasmic 4 	ENSMUST00000106241.1|Pabpc4|ENSMUSG00000011257.13|poly(A) binding protein, cytoplasmic 4 	ENSMUST00000080178.6|Pabpc4|ENSMUSG00000011257.13|poly(A) binding protein, cytoplasmic 4
mm10_v2_chr3_+_88532314_88532396	0.212338	Clock	ENSMUST00000172699.1|Mex3a|ENSMUSG00000074480.4|mex3 homolog A (C. elegans)
mm10_v2_chr10_+_69534039_69534070	0.212013	Clock	ENSMUST00000182557.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr19_+_45015168_45015187	0.211884	Clock	ENSMUST00000039016.6|Lzts2|ENSMUSG00000035342.7|leucine zipper, putative tumor suppressor 2
mm10_v2_chr4_+_32657107_32657166	0.205184	Clock	ENSMUST00000071642.4|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast) 	ENSMUST00000178134.1|Mdn1|ENSMUSG00000058006.6|midasin homolog (yeast)
mm10_v2_chr19_+_46056539_46056586	0.204666	Clock	ENSMUST00000111899.1|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1 	ENSMUST00000099392.3|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1 	ENSMUST00000062322.4|Pprc1|ENSMUSG00000055491.7|peroxisome proliferative activated receptor, gamma, coactivator-related 1
mm10_v2_chr8_+_90828820_90828842	0.204174	Clock	ENSMUST00000109614.2|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9 	ENSMUST00000048665.6|Chd9|ENSMUSG00000056608.7|chromodomain helicase DNA binding protein 9
mm10_v2_chr16_-_45158624_45158645	0.196611	Clock	ENSMUST00000180636.1|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr5_+_76951382_76951394	0.195052	Clock	ENSMUST00000141687.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm10_v2_chr5_-_137786651_137786668	0.193686	Clock	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr16_-_45158650_45158706	0.190411	Clock	ENSMUST00000023344.3|Slc35a5|ENSMUSG00000022664.5|solute carrier family 35, member A5
mm10_v2_chr4_-_129742275_129742312	0.189566	Clock	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr7_-_98361275_98361295	0.186282	Clock	ENSMUST00000094161.4|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000164726.1|Tsku|ENSMUSG00000049580.6|tsukushi 	ENSMUST00000167405.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr17_-_87265866_87265935	0.186134	Clock	ENSMUST00000145895.1|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2 	ENSMUST00000129616.1|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2 	ENSMUST00000155904.1|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2 	ENSMUST00000151155.1|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2 	ENSMUST00000144236.1|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2 	ENSMUST00000024963.3|Mcfd2|ENSMUSG00000024150.5|multiple coagulation factor deficiency 2
mm10_v2_chrX_+_6047453_6047453	0.185644	Clock	ENSMUST00000103007.3|Nudt11|ENSMUSG00000073295.4|nudix (nucleoside diphosphate linked moiety X)-type motif 11
mm10_v2_chr11_-_70410010_70410042	0.183704	Clock	ENSMUST00000019065.3|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1 	ENSMUST00000135148.1|Pelp1|ENSMUSG00000018921.5|proline, glutamic acid and leucine rich protein 1
mm10_v2_chr1_-_166409773_166409863	0.182105	Clock	ENSMUST00000135673.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000079972.6|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000169324.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000111411.2|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain 	ENSMUST00000128861.1|Pogk|ENSMUSG00000040596.9|pogo transposable element with KRAB domain
mm10_v2_chr16_+_43889936_43889947	0.181427	Clock	ENSMUST00000151183.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene
mm10_v2_chr4_-_124693568_124693606	0.174778	Clock	ENSMUST00000030738.7|Utp11l|ENSMUSG00000028907.7|UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)
mm10_v2_chr17_+_71204647_71204693	0.174463	Clock	ENSMUST00000126681.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr10_+_44268328_44268379	0.172462	Clock	ENSMUST00000039286.4|Atg5|ENSMUSG00000038160.6|autophagy related 5
mm10_v2_chr18_+_32837225_32837240	0.170315	Clock	ENSMUST00000166214.1|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36 	ENSMUST00000053663.9|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36
mm10_v2_chr18_+_76241580_76241741	0.166806	Clock	ENSMUST00000168423.1|Smad2|ENSMUSG00000024563.9|SMAD family member 2 	ENSMUST00000091831.6|Smad2|ENSMUSG00000024563.9|SMAD family member 2
mm10_v2_chr6_-_23839137_23839267	0.165348	Clock	ENSMUST00000166458.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000142913.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000115357.1|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000069074.7|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000115361.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000018122.7|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000115355.1|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2 	ENSMUST00000115356.2|Cadps2|ENSMUSG00000017978.12|Ca2+-dependent activator protein for secretion 2
mm10_v2_chr1_-_55088156_55088243	0.163252	Clock	ENSMUST00000127861.1|Hspd1|ENSMUSG00000025980.8|heat shock protein 1 (chaperonin) 	ENSMUST00000144077.1|Hspd1|ENSMUSG00000025980.8|heat shock protein 1 (chaperonin)
mm10_v2_chr16_-_35490873_35490891	0.1611	Clock	ENSMUST00000023550.7|Pdia5|ENSMUSG00000022844.7|protein disulfide isomerase associated 5
mm10_v2_chr7_-_98361310_98361328	0.158542	Clock	ENSMUST00000165257.1|Tsku|ENSMUSG00000049580.6|tsukushi
mm10_v2_chr4_+_107968332_107968424	0.158214	Clock	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr9_-_106891870_106891920	0.154748	Clock	ENSMUST00000160503.1|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor 	ENSMUST00000159620.2|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor 	ENSMUST00000160978.1|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor
mm10_v2_chr11_+_17211912_17211964	0.153732	Clock	ENSMUST00000046955.6|Wdr92|ENSMUSG00000078970.5|WD repeat domain 92
mm10_v2_chr9_+_58134535_58134810	0.153664	Clock	ENSMUST00000128378.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000150820.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000167479.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6 	ENSMUST00000134450.1|Stra6|ENSMUSG00000032327.8|stimulated by retinoic acid gene 6
mm10_v2_chr1_-_55088024_55088102	0.151477	Clock	ENSMUST00000027123.8|Hspd1|ENSMUSG00000025980.8|heat shock protein 1 (chaperonin)
mm10_v2_chr11_-_106789157_106789192	0.147618	Clock	ENSMUST00000129585.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr4_+_44756609_44756682	0.139507	Clock	ENSMUST00000143385.1|Zcchc7|ENSMUSG00000035649.11|zinc finger, CCHC domain containing 7
mm10_v2_chr17_-_28486082_28486149	0.138634	Clock	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr16_+_43889896_43889930	0.126876	Clock	ENSMUST00000122014.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene 	ENSMUST00000178400.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene
mm10_v2_chr19_-_29812952_29812974	0.126711	Clock	ENSMUST00000099525.3|Ranbp6|ENSMUSG00000074909.3|RAN binding protein 6
mm10_v2_chr14_-_89898466_89898466	0.125355	Clock	ENSMUST00000081204.4|Gm10110|ENSMUSG00000062093.4|predicted gene 10110
mm10_v2_chr13_-_75943812_75943950	0.120864	Clock	ENSMUST00000022078.5|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3 	ENSMUST00000109606.1|Rhobtb3|ENSMUSG00000021589.6|Rho-related BTB domain containing 3
mm10_v2_chr16_+_45158725_45158810	0.116075	Clock	ENSMUST00000023343.3|Atg3|ENSMUSG00000022663.3|autophagy related 3
mm10_v2_chr9_-_57606234_57606281	0.109801	Clock	ENSMUST00000045068.8|Cplx3|ENSMUSG00000039714.8|complexin 3
mm10_v2_chr8_+_123186235_123186262	0.107388	Clock	ENSMUST00000019422.4|Dpep1|ENSMUSG00000019278.4|dipeptidase 1 (renal)
mm10_v2_chr19_+_6975048_6975071	0.105512	Clock	ENSMUST00000070850.6|Ppp1r14b|ENSMUSG00000056612.6|protein phosphatase 1, regulatory (inhibitor) subunit 14B
mm10_v2_chr3_+_145576196_145576266	0.10204	Clock	ENSMUST00000098534.4|Znhit6|ENSMUSG00000074182.4|zinc finger, HIT type 6
mm10_v2_chr5_+_76974683_76974727	0.101343	Clock	ENSMUST00000101087.3|Srp72|ENSMUSG00000036323.8|signal recognition particle 72 	ENSMUST00000120550.1|Srp72|ENSMUSG00000036323.8|signal recognition particle 72
mm10_v2_chr17_+_43016536_43016591	0.0998552	Clock	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr17_+_35001282_35001347	0.0997846	Clock	ENSMUST00000174260.1|Vars|ENSMUSG00000007029.10|valyl-tRNA synthetase
mm10_v2_chr16_+_43889800_43889820	0.0990385	Clock	ENSMUST00000132859.1|2610015P09Rik|ENSMUSG00000022701.11|RIKEN cDNA 2610015P09 gene
mm10_v2_chr16_-_43889669_43889685	0.0978183	Clock	ENSMUST00000023387.7|Qtrtd1|ENSMUSG00000022704.9|queuine tRNA-ribosyltransferase domain containing 1
mm10_v2_chr4_+_57568144_57568160	0.0977382	Clock	ENSMUST00000102904.3|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr11_-_120348513_120348559	0.0919322	Clock	ENSMUST00000071555.6|Actg1|ENSMUSG00000062825.9|actin, gamma, cytoplasmic 1
mm10_v2_chr11_-_106788845_106788883	0.09131	Clock	ENSMUST00000123339.1|Ddx5|ENSMUSG00000020719.8|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
mm10_v2_chr2_-_38926217_38926454	0.0875717	Clock	ENSMUST00000076275.4|Nr6a1|ENSMUSG00000063972.7|nuclear receptor subfamily 6, group A, member 1 	ENSMUST00000142130.1|Nr6a1|ENSMUSG00000063972.7|nuclear receptor subfamily 6, group A, member 1
mm10_v2_chr11_-_72215592_72215592	0.0858562	Clock	ENSMUST00000021157.8|Med31|ENSMUSG00000020801.8|mediator of RNA polymerase II transcription, subunit 31 homolog (yeast)
mm10_v2_chrX_+_36328353_36328418	0.081367	Clock	ENSMUST00000016383.3|Lonrf3|ENSMUSG00000016239.5|LON peptidase N-terminal domain and ring finger 3
mm10_v2_chr5_+_120116480_120116525	0.0734412	Clock	ENSMUST00000031590.8|Rbm19|ENSMUSG00000029594.9|RNA binding motif protein 19
mm10_v2_chr4_-_11386757_11386783	0.0691793	Clock	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr11_+_106216926_106216968	0.0625605	Clock	ENSMUST00000021046.5|Ddx42|ENSMUSG00000020705.6|DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
mm10_v2_chr11_+_72441341_72441386	0.0573479	Clock	ENSMUST00000045633.5|Mybbp1a|ENSMUSG00000040463.10|MYB binding protein (P160) 1a
mm10_v2_chr7_+_127746775_127746775	0.0518385	Clock	ENSMUST00000033081.7|Fbxl19|ENSMUSG00000030811.8|F-box and leucine-rich repeat protein 19
mm10_v2_chr12_-_31950170_31950197	0.0507459	Clock	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr11_-_52000432_52000484	0.0476695	Clock	ENSMUST00000020657.6|Ube2b|ENSMUSG00000020390.6|ubiquitin-conjugating enzyme E2B
mm10_v2_chr8_+_125734203_125734307	0.0465332	Clock	ENSMUST00000034313.6|Ntpcr|ENSMUSG00000031851.8|nucleoside-triphosphatase, cancer-related 	ENSMUST00000065135.5|Ntpcr|ENSMUSG00000031851.8|nucleoside-triphosphatase, cancer-related
mm10_v2_chrX_-_7572843_7572858	0.0451466	Clock	ENSMUST00000132788.1|Ppp1r3f|ENSMUSG00000039556.10|protein phosphatase 1, regulatory (inhibitor) subunit 3F
mm10_v2_chr5_+_66676098_66676257	0.0435748	Clock	ENSMUST00000031131.9|Uchl1|ENSMUSG00000029223.9|ubiquitin carboxy-terminal hydrolase L1
mm10_v2_chr3_-_95882193_95882231	0.0402701	Clock	ENSMUST00000159863.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000159739.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000036418.3|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr7_-_46795661_46795722	0.0376058	Clock	ENSMUST00000123725.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr9_+_95637601_95637632	0.0362593	Clock	ENSMUST00000015498.8|Pcolce2|ENSMUSG00000015354.8|procollagen C-endopeptidase enhancer 2
mm10_v2_chr5_+_129941949_129942113	0.0317483	Clock	ENSMUST00000051758.7|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1 	ENSMUST00000073945.4|Vkorc1l1|ENSMUSG00000066735.5|vitamin K epoxide reductase complex, subunit 1-like 1
mm10_v2_chr4_-_148444744_148444783	0.0215448	Clock	ENSMUST00000051633.2|Ubiad1|ENSMUSG00000047719.2|UbiA prenyltransferase domain containing 1
mm10_v2_chr10_+_17723220_17723229	0.0174605	Clock	ENSMUST00000038107.7|Cited2|ENSMUSG00000039910.9|Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
mm10_v2_chr2_+_130906461_130906500	0.0152985	Clock	ENSMUST00000028781.8|Atrn|ENSMUSG00000027312.8|attractin
mm10_v2_chr7_-_46795881_46796085	0.0148957	Clock	ENSMUST00000107653.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000107654.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000014562.7|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human) 	ENSMUST00000152759.1|Hps5|ENSMUSG00000014418.9|Hermansky-Pudlak syndrome 5 homolog (human)
mm10_v2_chr2_-_163419508_163419548	0.0145897	Clock	ENSMUST00000046908.3|Oser1|ENSMUSG00000035399.6|oxidative stress responsive serine rich 1
mm10_v2_chr12_+_8674681_8674765	0.0142007	Clock	ENSMUST00000168361.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000169750.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila) 	ENSMUST00000163730.1|Pum2|ENSMUSG00000020594.8|pumilio 2 (Drosophila)
mm10_v2_chr11_+_78178651_78178772	0.0125412	Clock	ENSMUST00000092880.7|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1 	ENSMUST00000127587.1|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1 	ENSMUST00000108338.1|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1
mm10_v2_chr11_-_52000748_52000775	0.010093	Clock	ENSMUST00000109086.1|Ube2b|ENSMUSG00000020390.6|ubiquitin-conjugating enzyme E2B
mm10_v2_chr9_+_44067072_44067134	0.00647153	Clock	ENSMUST00000177054.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr13_-_100015562_100015647	0.00544919	Clock	ENSMUST00000022148.6|Mccc2|ENSMUSG00000021646.8|methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
mm10_v2_chr11_-_106216318_106216363	0.00294764	Clock	ENSMUST00000002043.3|Ccdc47|ENSMUSG00000078622.2|coiled-coil domain containing 47
mm10_v2_chr10_-_14544972_14545036	0.00218661	Clock	ENSMUST00000041168.4|Gpr126|ENSMUSG00000039116.4|G protein-coupled receptor 126
mm10_v2_chr5_-_74702891_74702914	0.00192034	Clock	ENSMUST00000117388.1|Lnx1|ENSMUSG00000029228.9|ligand of numb-protein X 1
