mm10_v2_chr4_+_118961578_118961612	4.01731	Emx1_Emx2	ENSMUST00000058651.4|Lao1|ENSMUSG00000024903.10|L-amino acid oxidase 1
mm10_v2_chr7_-_103827922_103828096	3.18721	Emx1_Emx2	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr4_-_82505749_82505802	3.00786	Emx1_Emx2	ENSMUST00000107245.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107246.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr4_-_82505274_82505358	2.67156	Emx1_Emx2	ENSMUST00000050872.8|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000064770.2|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr17_-_36032682_36032855	2.32378	Emx1_Emx2	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr4_-_82505707_82505739	2.10665	Emx1_Emx2	ENSMUST00000107248.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B 	ENSMUST00000107247.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr10_+_81257277_81257309	2.06675	Emx1_Emx2	ENSMUST00000117488.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000105328.3|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase 	ENSMUST00000121205.1|Matk|ENSMUSG00000004933.11|megakaryocyte-associated tyrosine kinase
mm10_v2_chr10_+_90071095_90071117	1.82211	Emx1_Emx2	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr7_-_142661858_142661880	1.65218	Emx1_Emx2	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr16_-_26371828_26371846	1.62236	Emx1_Emx2	ENSMUST00000023154.2|Cldn1|ENSMUSG00000022512.2|claudin 1
mm10_v2_chr8_-_21906412_21906437	1.46618	Emx1_Emx2	ENSMUST00000051965.4|Defb11|ENSMUSG00000045337.4|defensin beta 11
mm10_v2_chr7_+_126781483_126781483	1.4075	Emx1_Emx2	ENSMUST00000172352.1|Tbx6|ENSMUSG00000030699.10|T-box 6 	ENSMUST00000094037.4|Tbx6|ENSMUSG00000030699.10|T-box 6
mm10_v2_chr2_-_160619971_160619971	1.33921	Emx1_Emx2	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chrX_+_8271133_8271179	1.27079	Emx1_Emx2	ENSMUST00000127103.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5 	ENSMUST00000115591.1|Slc38a5|ENSMUSG00000031170.8|solute carrier family 38, member 5
mm10_v2_chr13_-_97747373_97747384	1.24236	Emx1_Emx2	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr3_+_121953213_121953295	1.14618	Emx1_Emx2	ENSMUST00000037958.7|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29 	ENSMUST00000128366.1|Arhgap29|ENSMUSG00000039831.10|Rho GTPase activating protein 29
mm10_v2_chr11_+_109543694_109543754	1.05508	Emx1_Emx2	ENSMUST00000106696.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr3_+_137341103_137341146	1.00781	Emx1_Emx2	ENSMUST00000119475.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr13_-_97747399_97747414	0.967946	Emx1_Emx2	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr1_-_158356258_158356313	0.926275	Emx1_Emx2	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr5_-_28210022_28210034	0.864729	Emx1_Emx2	ENSMUST00000118882.1|Cnpy1|ENSMUSG00000044681.12|canopy 1 homolog (zebrafish)
mm10_v2_chr3_-_49757257_49757316	0.837871	Emx1_Emx2	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr2_+_36230426_36230491	0.817636	Emx1_Emx2	ENSMUST00000062069.5|Ptgs1|ENSMUSG00000047250.7|prostaglandin-endoperoxide synthase 1
mm10_v2_chr6_-_57535422_57535447	0.810497	Emx1_Emx2	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr8_+_69300776_69300776	0.798165	Emx1_Emx2	ENSMUST00000078257.6|D130040H23Rik|ENSMUSG00000079038.2|RIKEN cDNA D130040H23 gene
mm10_v2_chr12_+_36314160_36314171	0.768527	Emx1_Emx2	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr12_-_90969768_90969790	0.767647	Emx1_Emx2	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr18_-_15403680_15403687	0.761381	Emx1_Emx2	ENSMUST00000079081.6|Aqp4|ENSMUSG00000024411.9|aquaporin 4
mm10_v2_chr3_+_90541146_90541173	0.712534	Emx1_Emx2	ENSMUST00000107333.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000107331.1|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16 	ENSMUST00000098910.2|S100a16|ENSMUSG00000074457.4|S100 calcium binding protein A16
mm10_v2_chr3_+_137341067_137341095	0.692233	Emx1_Emx2	ENSMUST00000122064.1|Emcn|ENSMUSG00000054690.11|endomucin
mm10_v2_chr14_-_57133585_57133618	0.660737	Emx1_Emx2	ENSMUST00000039380.8|Gjb6|ENSMUSG00000040055.8|gap junction protein, beta 6
mm10_v2_chr9_+_72958785_72958850	0.656248	Emx1_Emx2	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr12_-_98577940_98578046	0.655954	Emx1_Emx2	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr2_+_175469985_175470063	0.635465	Emx1_Emx2	ENSMUST00000109042.3|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109002.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000109043.2|Gm8923|ENSMUSG00000078896.5|predicted gene 8923 	ENSMUST00000143490.1|Gm8923|ENSMUSG00000078896.5|predicted gene 8923
mm10_v2_chr4_+_126609818_126609896	0.626074	Emx1_Emx2	ENSMUST00000097886.3|5730409E04Rik|ENSMUSG00000073755.4|RIKEN cDNA 5730409E04Rik gene 	ENSMUST00000164362.1|5730409E04Rik|ENSMUSG00000073755.4|RIKEN cDNA 5730409E04Rik gene
mm10_v2_chr16_-_97170707_97170759	0.615105	Emx1_Emx2	ENSMUST00000056102.7|Dscam|ENSMUSG00000050272.9|Down syndrome cell adhesion molecule
mm10_v2_chr13_+_23763660_23763674	0.609748	Emx1_Emx2	ENSMUST00000055770.1|Hist1h1a|ENSMUSG00000049539.1|histone cluster 1, H1a
mm10_v2_chr2_-_175703646_175703646	0.589634	Emx1_Emx2	ENSMUST00000109027.2|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000179061.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245 	ENSMUST00000131041.1|Gm4245|ENSMUSG00000095545.1|predicted gene 4245
mm10_v2_chr2_+_175372436_175372492	0.589099	Emx1_Emx2	ENSMUST00000131676.1|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109048.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723 	ENSMUST00000109047.2|Gm4723|ENSMUSG00000078898.3|predicted gene 4723
mm10_v2_chr13_+_16014457_16014475	0.585285	Emx1_Emx2	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr17_-_45599603_45599623	0.575179	Emx1_Emx2	ENSMUST00000171847.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000166633.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1 	ENSMUST00000169729.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr10_-_53647080_53647080	0.565856	Emx1_Emx2	ENSMUST00000169866.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr17_-_31636631_31636790	0.562446	Emx1_Emx2	ENSMUST00000135425.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase 	ENSMUST00000151718.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase 	ENSMUST00000155814.1|Cbs|ENSMUSG00000024039.8|cystathionine beta-synthase
mm10_v2_chr1_-_144177259_144177372	0.558237	Emx1_Emx2	ENSMUST00000111941.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13 	ENSMUST00000052375.1|Rgs13|ENSMUSG00000051079.2|regulator of G-protein signaling 13
mm10_v2_chr14_+_55560010_55560037	0.508447	Emx1_Emx2	ENSMUST00000147981.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11 	ENSMUST00000133256.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr18_-_73754457_73754503	0.474531	Emx1_Emx2	ENSMUST00000041138.2|Elac1|ENSMUSG00000036941.2|elaC homolog 1 (E. coli)
mm10_v2_chr8_+_34054622_34054647	0.456777	Emx1_Emx2	ENSMUST00000149618.1|Gm9951|ENSMUSG00000054618.8|predicted gene 9951
mm10_v2_chr17_+_45734506_45734630	0.438652	Emx1_Emx2	ENSMUST00000180558.1|F630040K05Rik|ENSMUSG00000097727.1|RIKEN cDNA F630040K05 gene
mm10_v2_chr4_-_150914401_150914480	0.431059	Emx1_Emx2	ENSMUST00000105675.1|Park7|ENSMUSG00000028964.8|Parkinson disease (autosomal recessive, early onset) 7
mm10_v2_chr10_-_25297055_25297101	0.421412	Emx1_Emx2	ENSMUST00000177124.1|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr9_-_124304718_124304718	0.416636	Emx1_Emx2	ENSMUST00000071300.6|2010315B03Rik|ENSMUSG00000074829.4|RIKEN cDNA 2010315B03 gene
mm10_v2_chr5_+_135009152_135009317	0.415379	Emx1_Emx2	ENSMUST00000111216.1|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11 	ENSMUST00000046999.8|Abhd11|ENSMUSG00000040532.8|abhydrolase domain containing 11
mm10_v2_chrM_+_11734_11757	0.414043	Emx1_Emx2	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr6_-_129533267_129533275	0.412554	Emx1_Emx2	ENSMUST00000181594.1|1700101I11Rik|ENSMUSG00000097675.1|RIKEN cDNA 1700101I11 gene
mm10_v2_chr7_-_5413145_5413145	0.411427	Emx1_Emx2	ENSMUST00000108569.2|Vmn1r58|ENSMUSG00000078808.4|vomeronasal 1 receptor 58
mm10_v2_chr18_-_34579072_34579130	0.410682	Emx1_Emx2	ENSMUST00000079287.5|Nme5|ENSMUSG00000035984.8|NME/NM23 family member 5
mm10_v2_chr4_+_102589687_102589843	0.407953	Emx1_Emx2	ENSMUST00000097949.4|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific 	ENSMUST00000106901.1|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr9_+_56418624_56418681	0.391388	Emx1_Emx2	ENSMUST00000034879.3|Hmg20a|ENSMUSG00000032329.3|high mobility group 20A
mm10_v2_chr10_-_86011833_86011896	0.378541	Emx1_Emx2	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr9_-_15301555_15301607	0.369234	Emx1_Emx2	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr14_-_18893376_18893420	0.359744	Emx1_Emx2	ENSMUST00000151926.1|Ube2e2|ENSMUSG00000058317.5|ubiquitin-conjugating enzyme E2E 2
mm10_v2_chr8_-_8690493_8690538	0.35855	Emx1_Emx2	ENSMUST00000048545.8|Arglu1|ENSMUSG00000040459.10|arginine and glutamate rich 1
mm10_v2_chr16_-_44016387_44016436	0.319039	Emx1_Emx2	ENSMUST00000036174.3|Gramd1c|ENSMUSG00000036292.7|GRAM domain containing 1C
mm10_v2_chr14_+_26259109_26259109	0.316313	Emx1_Emx2	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr12_-_56345862_56345894	0.315014	Emx1_Emx2	ENSMUST00000021416.7|Mbip|ENSMUSG00000021028.7|MAP3K12 binding inhibitory protein 1
mm10_v2_chr15_+_99295087_99295279	0.308307	Emx1_Emx2	ENSMUST00000128352.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast) 	ENSMUST00000145482.1|Prpf40b|ENSMUSG00000023007.9|PRP40 pre-mRNA processing factor 40 homolog B (yeast)
mm10_v2_chr4_+_110397661_110397708	0.306007	Emx1_Emx2	ENSMUST00000106589.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106587.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106591.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000106592.1|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr14_+_53324632_53324632	0.299969	Emx1_Emx2	ENSMUST00000178100.1|Trav7n-6|ENSMUSG00000095415.1|T cell receptor alpha variable 7N-6
mm10_v2_chr6_+_79818031_79818031	0.292681	Emx1_Emx2	ENSMUST00000179797.1|Gm20594|ENSMUSG00000096887.1|predicted gene, 20594
mm10_v2_chr6_+_17749170_17749265	0.291734	Emx1_Emx2	ENSMUST00000053148.7|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7 	ENSMUST00000115417.3|St7|ENSMUSG00000029534.11|suppression of tumorigenicity 7
mm10_v2_chrM_+_2743_2761	0.288873	Emx1_Emx2	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr9_-_20728219_20728219	0.280236	Emx1_Emx2	ENSMUST00000034692.7|Olfm2|ENSMUSG00000032172.7|olfactomedin 2
mm10_v2_chr14_+_25979401_25979401	0.278657	Emx1_Emx2	ENSMUST00000173580.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr14_+_25980039_25980039	0.277899	Emx1_Emx2	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr2_-_34826071_34826087	0.274457	Emx1_Emx2	ENSMUST00000113077.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000028220.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr4_+_110397764_110397808	0.272713	Emx1_Emx2	ENSMUST00000097920.2|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4 	ENSMUST00000080744.6|Agbl4|ENSMUSG00000061298.8|ATP/GTP binding protein-like 4
mm10_v2_chr1_-_40085823_40085862	0.270294	Emx1_Emx2	ENSMUST00000181756.1|Gm16894|ENSMUSG00000097899.1|predicted gene, 16894
mm10_v2_chr7_-_101845300_101845339	0.268439	Emx1_Emx2	ENSMUST00000094141.5|Folr2|ENSMUSG00000032725.9|folate receptor 2 (fetal)
mm10_v2_chrX_-_102505359_102505412	0.266869	Emx1_Emx2	ENSMUST00000087916.4|Hdac8|ENSMUSG00000067567.6|histone deacetylase 8
mm10_v2_chr10_+_79996479_79996505	0.266403	Emx1_Emx2	ENSMUST00000132517.1|Abca7|ENSMUSG00000035722.9|ATP-binding cassette, sub-family A (ABC1), member 7
mm10_v2_chr2_+_110597298_110597316	0.253054	Emx1_Emx2	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr12_-_87388317_87388355	0.247577	Emx1_Emx2	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr11_-_42000284_42000356	0.232334	Emx1_Emx2	ENSMUST00000109292.2|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 	ENSMUST00000109290.1|Gabrg2|ENSMUSG00000020436.11|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
mm10_v2_chr3_-_130730375_130730398	0.232105	Emx1_Emx2	ENSMUST00000079085.6|Rpl34|ENSMUSG00000062006.6|ribosomal protein L34
mm10_v2_chr7_+_132610620_132610662	0.231962	Emx1_Emx2	ENSMUST00000033241.5|Lhpp|ENSMUSG00000030946.6|phospholysine phosphohistidine inorganic pyrophosphate phosphatase
mm10_v2_chr3_-_146495115_146495139	0.230069	Emx1_Emx2	ENSMUST00000093951.2|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr13_-_106847267_106847267	0.227045	Emx1_Emx2	ENSMUST00000057427.4|Lrrc70|ENSMUSG00000078933.1|leucine rich repeat containing 70
mm10_v2_chr2_-_34826187_34826240	0.220537	Emx1_Emx2	ENSMUST00000113075.1|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000113080.2|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2 	ENSMUST00000091020.3|Fbxw2|ENSMUSG00000035949.9|F-box and WD-40 domain protein 2
mm10_v2_chr7_-_84679346_84679401	0.217253	Emx1_Emx2	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr8_+_85432686_85432686	0.214362	Emx1_Emx2	ENSMUST00000180883.1|1700051O22Rik|ENSMUSG00000096933.1|RIKEN cDNA 1700051O22 Gene
mm10_v2_chr17_+_29274078_29274129	0.204961	Emx1_Emx2	ENSMUST00000149405.2|BC004004|ENSMUSG00000052712.10|cDNA sequence BC004004
mm10_v2_chr12_-_98259416_98259459	0.198772	Emx1_Emx2	ENSMUST00000021390.7|Galc|ENSMUSG00000021003.9|galactosylceramidase
mm10_v2_chrX_-_150814265_150814345	0.198741	Emx1_Emx2	ENSMUST00000026302.6|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000129768.1|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2 	ENSMUST00000112699.2|Maged2|ENSMUSG00000025268.9|melanoma antigen, family D, 2
mm10_v2_chr4_-_155645408_155645408	0.194595	Emx1_Emx2	ENSMUST00000115821.2|Gm10563|ENSMUSG00000073682.3|predicted gene 10563
mm10_v2_chr14_+_26119173_26119173	0.192142	Emx1_Emx2	ENSMUST00000174564.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr14_+_26258786_26258786	0.192142	Emx1_Emx2	ENSMUST00000172517.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr4_-_64276595_64276604	0.190793	Emx1_Emx2	ENSMUST00000141162.1|Gm11217|ENSMUSG00000085032.1|predicted gene 11217
mm10_v2_chr2_+_144594054_144594083	0.190616	Emx1_Emx2	ENSMUST00000136628.1|Gm561|ENSMUSG00000074754.4|predicted gene 561
mm10_v2_chr3_-_151749877_151749919	0.189216	Emx1_Emx2	ENSMUST00000029671.7|Ifi44|ENSMUSG00000028037.7|interferon-induced protein 44
mm10_v2_chr19_+_34217588_34217624	0.181819	Emx1_Emx2	ENSMUST00000119603.1|Stambpl1|ENSMUSG00000024776.11|STAM binding protein like 1
mm10_v2_chr1_+_63176818_63176919	0.178922	Emx1_Emx2	ENSMUST00000129339.1|Eef1b2|ENSMUSG00000025967.10|eukaryotic translation elongation factor 1 beta 2
mm10_v2_chr2_-_73580288_73580353	0.177504	Emx1_Emx2	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr10_+_81183000_81183048	0.17345	Emx1_Emx2	ENSMUST00000178422.1|Dapk3|ENSMUSG00000034974.6|death-associated protein kinase 3
mm10_v2_chr8_+_72219726_72219785	0.169714	Emx1_Emx2	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr14_+_26119811_26119811	0.169435	Emx1_Emx2	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr17_+_14943184_14943281	0.165156	Emx1_Emx2	ENSMUST00000052691.8|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000164837.2|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene 	ENSMUST00000174004.1|1600012H06Rik|ENSMUSG00000050088.9|RIKEN cDNA 1600012H06 gene
mm10_v2_chr6_+_42245907_42245977	0.164764	Emx1_Emx2	ENSMUST00000031897.5|Gstk1|ENSMUSG00000029864.5|glutathione S-transferase kappa 1
mm10_v2_chrX_-_160994665_160994702	0.161339	Emx1_Emx2	ENSMUST00000087104.4|Cdkl5|ENSMUSG00000031292.8|cyclin-dependent kinase-like 5
mm10_v2_chrX_-_74393003_74393072	0.161293	Emx1_Emx2	ENSMUST00000015427.6|Fam3a|ENSMUSG00000031399.9|family with sequence similarity 3, member A
mm10_v2_chr3_+_88716838_88716883	0.160752	Emx1_Emx2	ENSMUST00000029692.8|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1 	ENSMUST00000171645.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr7_-_97738222_97738317	0.160273	Emx1_Emx2	ENSMUST00000084986.6|Aqp11|ENSMUSG00000042797.8|aquaporin 11
mm10_v2_chr10_+_128322443_128322476	0.155631	Emx1_Emx2	ENSMUST00000026446.2|Cnpy2|ENSMUSG00000025381.2|canopy 2 homolog (zebrafish)
mm10_v2_chr6_+_124304646_124304671	0.15528	Emx1_Emx2	ENSMUST00000112541.2|Cd163|ENSMUSG00000008845.3|CD163 antigen 	ENSMUST00000032234.2|Cd163|ENSMUSG00000008845.3|CD163 antigen
mm10_v2_chr3_+_32436376_32436376	0.154783	Emx1_Emx2	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr6_-_101377342_101377388	0.149518	Emx1_Emx2	ENSMUST00000151175.1|Pdzrn3|ENSMUSG00000035357.10|PDZ domain containing RING finger 3
mm10_v2_chr14_+_118137101_118137178	0.14896	Emx1_Emx2	ENSMUST00000022728.2|Gpr180|ENSMUSG00000022131.2|G protein-coupled receptor 180
mm10_v2_chr17_-_32822200_32822200	0.137523	Emx1_Emx2	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr1_+_93685574_93685694	0.135064	Emx1_Emx2	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr7_-_38019505_38019552	0.134212	Emx1_Emx2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr15_+_85510812_85510812	0.132828	Emx1_Emx2	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr4_+_147492417_147492417	0.132727	Emx1_Emx2	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr12_-_12940600_12940616	0.131951	Emx1_Emx2	ENSMUST00000130990.1|Mycn|ENSMUSG00000037169.8|v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
mm10_v2_chr3_+_121531603_121531634	0.131591	Emx1_Emx2	ENSMUST00000180804.1|A530020G20Rik|ENSMUSG00000097124.1|RIKEN cDNA A530020G20 gene
mm10_v2_chr2_-_119662756_119662835	0.130338	Emx1_Emx2	ENSMUST00000028768.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 	ENSMUST00000110801.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1 	ENSMUST00000110802.1|Ndufaf1|ENSMUSG00000027305.3|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1
mm10_v2_chr16_+_21794320_21794381	0.127205	Emx1_Emx2	ENSMUST00000181780.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene 	ENSMUST00000181960.1|1300002E11Rik|ENSMUSG00000097290.1|RIKEN cDNA 1300002E11 gene
mm10_v2_chr6_+_129533183_129533205	0.116917	Emx1_Emx2	ENSMUST00000032264.6|Gabarapl1|ENSMUSG00000030161.6|gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1
mm10_v2_chr14_-_15438974_15439002	0.115919	Emx1_Emx2	ENSMUST00000055211.4|Lrrc3b|ENSMUSG00000045201.5|leucine rich repeat containing 3B
mm10_v2_chr7_-_125491397_125491413	0.114753	Emx1_Emx2	ENSMUST00000138616.1|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr2_-_67194695_67194736	0.114146	Emx1_Emx2	ENSMUST00000147939.1|Gm13598|ENSMUSG00000086908.1|predicted gene 13598
mm10_v2_chr3_+_32436151_32436151	0.110343	Emx1_Emx2	ENSMUST00000029201.7|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr1_-_184999549_184999549	0.105561	Emx1_Emx2	ENSMUST00000027929.4|Mark1|ENSMUSG00000026620.6|MAP/microtubule affinity-regulating kinase 1
mm10_v2_chr13_-_4609122_4609189	0.105408	Emx1_Emx2	ENSMUST00000110691.3|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1 	ENSMUST00000091848.5|Akr1e1|ENSMUSG00000045410.11|aldo-keto reductase family 1, member E1
mm10_v2_chr1_+_163779575_163779592	0.105237	Emx1_Emx2	ENSMUST00000027877.6|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3 	ENSMUST00000077642.5|Kifap3|ENSMUSG00000026585.7|kinesin-associated protein 3
mm10_v2_chr2_-_28583189_28583230	0.105112	Emx1_Emx2	ENSMUST00000113889.2|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr2_-_28583239_28583279	0.103184	Emx1_Emx2	ENSMUST00000028157.8|Gtf3c5|ENSMUSG00000026816.8|general transcription factor IIIC, polypeptide 5
mm10_v2_chr18_-_6241486_6241550	0.092029	Emx1_Emx2	ENSMUST00000025083.7|Kif5b|ENSMUSG00000006740.7|kinesin family member 5B
mm10_v2_chrX_+_106027300_106027323	0.0876291	Emx1_Emx2	ENSMUST00000055941.6|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr10_+_52022502_52022534	0.0864386	Emx1_Emx2	ENSMUST00000163017.1|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila) 	ENSMUST00000058347.4|Vgll2|ENSMUSG00000049641.6|vestigial like 2 homolog (Drosophila)
mm10_v2_chr10_+_102158858_102158889	0.086307	Emx1_Emx2	ENSMUST00000138522.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000163753.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENSMUST00000138016.1|Mgat4c|ENSMUSG00000019888.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
mm10_v2_chr7_+_43672003_43672040	0.0821969	Emx1_Emx2	ENSMUST00000038332.8|Ctu1|ENSMUSG00000038888.8|cytosolic thiouridylase subunit 1 homolog (S. pombe)
mm10_v2_chr13_+_94976435_94976452	0.0805925	Emx1_Emx2	ENSMUST00000160409.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000159647.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41 	ENSMUST00000167155.1|Wdr41|ENSMUSG00000042015.10|WD repeat domain 41
mm10_v2_chrX_+_106027259_106027293	0.0805518	Emx1_Emx2	ENSMUST00000113557.1|Atp7a|ENSMUSG00000033792.6|ATPase, Cu++ transporting, alpha polypeptide
mm10_v2_chr2_-_155930190_155930310	0.0784708	Emx1_Emx2	ENSMUST00000109636.4|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109631.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr2_-_155930018_155930066	0.0780903	Emx1_Emx2	ENSMUST00000152766.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000139232.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000109632.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000006036.6|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000142655.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1 	ENSMUST00000159238.1|Uqcc1|ENSMUSG00000005882.12|ubiquinol-cytochrome c reductase complex assembly factor 1
mm10_v2_chr15_+_99006056_99006056	0.077401	Emx1_Emx2	ENSMUST00000079818.3|Gm8973|ENSMUSG00000064081.3|predicted gene 8973
mm10_v2_chr16_-_63864114_63864182	0.0731781	Emx1_Emx2	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr3_+_106034661_106034692	0.0731353	Emx1_Emx2	ENSMUST00000170669.2|Gm4540|ENSMUSG00000092072.2|predicted gene 4540
mm10_v2_chr3_+_88716884_88716906	0.072	Emx1_Emx2	ENSMUST00000172252.1|Rit1|ENSMUSG00000028057.8|Ras-like without CAAX 1
mm10_v2_chr15_+_80711292_80711340	0.0704991	Emx1_Emx2	ENSMUST00000067689.7|Tnrc6b|ENSMUSG00000047888.9|trinucleotide repeat containing 6b
mm10_v2_chr17_-_45686899_45686923	0.0683895	Emx1_Emx2	ENSMUST00000156254.1|Tmem63b|ENSMUSG00000036026.9|transmembrane protein 63b
mm10_v2_chr2_-_12419456_12419474	0.0680955	Emx1_Emx2	ENSMUST00000154899.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A 	ENSMUST00000028105.6|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr15_-_36496722_36496808	0.05909	Emx1_Emx2	ENSMUST00000057486.7|Ankrd46|ENSMUSG00000048307.7|ankyrin repeat domain 46
mm10_v2_chr8_+_93810832_93810843	0.0589518	Emx1_Emx2	ENSMUST00000034198.8|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O 	ENSMUST00000125716.1|Gnao1|ENSMUSG00000031748.9|guanine nucleotide binding protein, alpha O
mm10_v2_chr5_-_118244861_118245116	0.0543706	Emx1_Emx2	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chr12_-_87444017_87444017	0.0515538	Emx1_Emx2	ENSMUST00000091090.4|2700073G19Rik|ENSMUSG00000021041.7|RIKEN cDNA 2700073G19 gene
mm10_v2_chr8_-_85432841_85432859	0.0512734	Emx1_Emx2	ENSMUST00000047749.5|4921524J17Rik|ENSMUSG00000036934.8|RIKEN cDNA 4921524J17 gene
mm10_v2_chr15_-_102510681_102510705	0.0487083	Emx1_Emx2	ENSMUST00000171565.1|Map3k12|ENSMUSG00000023050.2|mitogen-activated protein kinase kinase kinase 12
mm10_v2_chr13_-_23934156_23934225	0.0454666	Emx1_Emx2	ENSMUST00000052776.2|Hist1h2ba|ENSMUSG00000050799.2|histone cluster 1, H2ba
mm10_v2_chr9_-_53667429_53667521	0.0401257	Emx1_Emx2	ENSMUST00000166367.1|Cul5|ENSMUSG00000032030.10|cullin 5 	ENSMUST00000034529.7|Cul5|ENSMUSG00000032030.10|cullin 5
mm10_v2_chr11_+_72689997_72690015	0.037203	Emx1_Emx2	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr6_+_37870786_37870882	0.0369846	Emx1_Emx2	ENSMUST00000120428.1|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24 	ENSMUST00000031859.7|Trim24|ENSMUSG00000029833.11|tripartite motif-containing 24
mm10_v2_chr15_-_33687840_33687883	0.0368873	Emx1_Emx2	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr11_+_17257558_17257688	0.0360621	Emx1_Emx2	ENSMUST00000000594.2|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor 	ENSMUST00000156784.1|C1d|ENSMUSG00000000581.2|C1D nuclear receptor co-repressor
mm10_v2_chr13_+_23555023_23555039	0.0354482	Emx1_Emx2	ENSMUST00000045301.6|Hist1h1d|ENSMUSG00000052565.5|histone cluster 1, H1d
mm10_v2_chr2_-_93452679_93452687	0.0296404	Emx1_Emx2	ENSMUST00000111257.1|Cd82|ENSMUSG00000027215.7|CD82 antigen 	ENSMUST00000145553.1|Cd82|ENSMUSG00000027215.7|CD82 antigen
mm10_v2_chr12_-_84617326_84617466	0.0295878	Emx1_Emx2	ENSMUST00000021666.4|Abcd4|ENSMUSG00000021240.5|ATP-binding cassette, sub-family D (ALD), member 4
mm10_v2_chr2_-_12419387_12419399	0.0286857	Emx1_Emx2	ENSMUST00000124515.1|Fam188a|ENSMUSG00000026767.6|family with sequence similarity 188, member A
mm10_v2_chr17_+_46772635_46772635	0.0254971	Emx1_Emx2	ENSMUST00000071430.5|2310039H08Rik|ENSMUSG00000062619.5|RIKEN cDNA 2310039H08 gene
mm10_v2_chr3_-_37125943_37125969	0.0254733	Emx1_Emx2	ENSMUST00000029275.5|Il2|ENSMUSG00000027720.7|interleukin 2
mm10_v2_chr4_-_134245579_134245604	0.0253192	Emx1_Emx2	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr4_+_41966058_41966058	0.0243924	Emx1_Emx2	ENSMUST00000108026.2|Gm20938|ENSMUSG00000078746.2|predicted gene, 20938
mm10_v2_chrX_-_134111852_134111873	0.023911	Emx1_Emx2	ENSMUST00000033610.6|Nox1|ENSMUSG00000031257.8|NADPH oxidase 1
mm10_v2_chr1_-_63176653_63176822	0.0130247	Emx1_Emx2	ENSMUST00000027111.8|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1 	ENSMUST00000168099.2|Ndufs1|ENSMUSG00000025968.10|NADH dehydrogenase (ubiquinone) Fe-S protein 1
