mm10_v2_chr2_+_71528657_71528683	22.2385	Hoxa6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr8_-_46294592_46294671	10.7267	Hoxa6	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr19_-_59170978_59170978	10.2383	Hoxa6	ENSMUST00000172821.2|Vax1|ENSMUSG00000006270.6|ventral anterior homeobox containing gene 1
mm10_v2_chr1_-_163313661_163313710	8.13836	Hoxa6	ENSMUST00000174397.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000075805.6|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000027878.7|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr14_-_118052235_118052253	7.86651	Hoxa6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr6_+_15185203_15185244	6.15129	Hoxa6	ENSMUST00000154448.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr2_-_36104060_36104073	4.77026	Hoxa6	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr15_-_8710734_8710764	4.70066	Hoxa6	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr2_+_70474923_70474923	4.13964	Hoxa6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr5_-_123141067_123141094	4.12763	Hoxa6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr13_-_103764502_103764505	3.54119	Hoxa6	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr16_+_42907563_42907684	3.44443	Hoxa6	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr14_-_48665098_48665246	3.40778	Hoxa6	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr15_-_8710409_8710498	3.26135	Hoxa6	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr10_-_42583628_42583639	3.16742	Hoxa6	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr2_+_20737306_20737321	3.1657	Hoxa6	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr4_+_11579647_11579674	3.12661	Hoxa6	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr4_-_14621805_14621819	2.54452	Hoxa6	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr14_-_122451109_122451121	2.52429	Hoxa6	ENSMUST00000081580.2|Gm5089|ENSMUSG00000064052.2|predicted gene 5089
mm10_v2_chr8_-_84773381_84773427	2.4927	Hoxa6	ENSMUST00000109764.1|Nfix|ENSMUSG00000001911.10|nuclear factor I/X
mm10_v2_chr10_+_97479470_97479500	2.36151	Hoxa6	ENSMUST00000105287.3|Dcn|ENSMUSG00000019929.9|decorin
mm10_v2_chr13_-_83729544_83729584	2.32522	Hoxa6	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr17_-_58991343_58991375	2.02854	Hoxa6	ENSMUST00000025064.7|2610034M16Rik|ENSMUSG00000024227.8|RIKEN cDNA 2610034M16 gene
mm10_v2_chr3_+_84952146_84952186	1.91199	Hoxa6	ENSMUST00000029727.7|Fbxw7|ENSMUSG00000028086.8|F-box and WD-40 domain protein 7
mm10_v2_chr19_+_55894508_55894534	1.85132	Hoxa6	ENSMUST00000142291.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr1_+_19103022_19103043	1.843	Hoxa6	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr13_-_97747373_97747384	1.83828	Hoxa6	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr2_-_58052832_58052870	1.7786	Hoxa6	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr2_+_116067933_116067975	1.75803	Hoxa6	ENSMUST00000156095.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr17_+_75178797_75178824	1.75796	Hoxa6	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr1_+_137928100_137928170	1.72425	Hoxa6	ENSMUST00000054333.2|A130050O07Rik|ENSMUSG00000051480.2|RIKEN cDNA A130050O07 gene
mm10_v2_chr5_+_42067960_42067960	1.69113	Hoxa6	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr1_-_165934900_165935036	1.67618	Hoxa6	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr17_+_75178911_75178961	1.60035	Hoxa6	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr13_-_84064772_84064808	1.58739	Hoxa6	ENSMUST00000182477.1|Gm17750|ENSMUSG00000098087.1|predicted gene, 17750
mm10_v2_chr5_+_149678224_149678241	1.52772	Hoxa6	ENSMUST00000100404.3|B3galtl|ENSMUSG00000051950.8|beta 1,3-galactosyltransferase-like
mm10_v2_chr10_-_13388753_13388774	1.43709	Hoxa6	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr10_+_88091070_88091076	1.42668	Hoxa6	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr2_-_116067391_116067444	1.4123	Hoxa6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr1_+_104768510_104768529	1.3974	Hoxa6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr2_+_79707780_79707927	1.35819	Hoxa6	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr10_-_13388830_13388970	1.33812	Hoxa6	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr2_+_26591423_26591435	1.31532	Hoxa6	ENSMUST00000152988.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000149789.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr6_-_138422898_138422999	1.31416	Hoxa6	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr4_-_14621669_14621786	1.30655	Hoxa6	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr4_-_14621494_14621506	1.29818	Hoxa6	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr2_-_33942111_33942151	1.27626	Hoxa6	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr1_-_87394721_87394734	1.24692	Hoxa6	ENSMUST00000113212.3|Kcnj13|ENSMUSG00000079436.3|potassium inwardly-rectifying channel, subfamily J, member 13
mm10_v2_chr7_-_109170308_109170308	1.2366	Hoxa6	ENSMUST00000036992.7|Lmo1|ENSMUSG00000036111.7|LIM domain only 1
mm10_v2_chr7_-_116038734_116038750	1.23331	Hoxa6	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr12_-_54986363_54986529	1.22496	Hoxa6	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr14_-_46390501_46390550	1.21641	Hoxa6	ENSMUST00000100676.2|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr2_+_132847719_132847743	1.2066	Hoxa6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr19_+_55895508_55895511	1.19274	Hoxa6	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr3_+_41563356_41563392	1.18729	Hoxa6	ENSMUST00000163764.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr5_+_111581422_111581422	1.18356	Hoxa6	ENSMUST00000064930.3|C130026L21Rik|ENSMUSG00000052848.3|RIKEN cDNA C130026L21 gene
mm10_v2_chr2_-_168767029_168767104	1.12907	Hoxa6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr8_-_105568298_105568298	1.12054	Hoxa6	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
mm10_v2_chr14_-_48662740_48662872	1.11098	Hoxa6	ENSMUST00000122009.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chrM_+_7005_7022	1.09795	Hoxa6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr1_-_166002591_166002609	1.095	Hoxa6	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr7_-_37773555_37773641	1.04489	Hoxa6	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr14_-_46390576_46390669	1.04479	Hoxa6	ENSMUST00000074077.5|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr16_-_95459245_95459384	0.966576	Hoxa6	ENSMUST00000176345.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000121809.2|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000118113.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000122199.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chr9_-_42399915_42399929	0.966083	Hoxa6	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr9_-_32541589_32541602	0.960318	Hoxa6	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr9_-_42399709_42399727	0.953608	Hoxa6	ENSMUST00000160940.1|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr12_-_54986328_54986342	0.937721	Hoxa6	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chrX_-_59166080_59166164	0.922968	Hoxa6	ENSMUST00000119306.1|Fgf13|ENSMUSG00000031137.11|fibroblast growth factor 13
mm10_v2_chr9_+_120929216_120929251	0.905068	Hoxa6	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr5_+_89027959_89027967	0.886598	Hoxa6	ENSMUST00000130041.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr13_-_53473074_53473074	0.873182	Hoxa6	ENSMUST00000021922.8|Msx2|ENSMUSG00000021469.8|msh homeobox 2
mm10_v2_chr1_-_166002613_166002678	0.871792	Hoxa6	ENSMUST00000177358.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160908.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000027850.8|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160260.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr6_-_138426735_138426816	0.856071	Hoxa6	ENSMUST00000162932.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr10_-_40302186_40302206	0.855105	Hoxa6	ENSMUST00000099945.4|Amd1|ENSMUSG00000075232.4|S-adenosylmethionine decarboxylase 1
mm10_v2_chr13_+_63014934_63014934	0.853063	Hoxa6	ENSMUST00000091560.4|2010111I01Rik|ENSMUSG00000021458.10|RIKEN cDNA 2010111I01 gene
mm10_v2_chr13_-_18382041_18382041	0.831074	Hoxa6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr5_+_66968416_66968447	0.828724	Hoxa6	ENSMUST00000038188.7|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr2_-_63184253_63184292	0.817601	Hoxa6	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr4_-_110292719_110292732	0.802153	Hoxa6	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr9_-_60141220_60141246	0.788066	Hoxa6	ENSMUST00000034829.5|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr11_-_33203588_33203599	0.764214	Hoxa6	ENSMUST00000037746.6|Tlx3|ENSMUSG00000040610.6|T cell leukemia, homeobox 3
mm10_v2_chr15_-_79285502_79285537	0.758732	Hoxa6	ENSMUST00000165408.1|Baiap2l2|ENSMUSG00000018126.9|BAI1-associated protein 2-like 2
mm10_v2_chr3_+_130180882_130180899	0.753588	Hoxa6	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr4_-_42168603_42168603	0.746635	Hoxa6	ENSMUST00000098121.3|Gm13305|ENSMUSG00000073876.3|predicted gene 13305
mm10_v2_chr11_+_102604370_102604435	0.732168	Hoxa6	ENSMUST00000057893.5|Fzd2|ENSMUSG00000050288.5|frizzled homolog 2 (Drosophila)
mm10_v2_chr2_-_170194033_170194064	0.730814	Hoxa6	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr3_+_68572245_68572392	0.728016	Hoxa6	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr4_-_82885148_82885148	0.715756	Hoxa6	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr16_+_43247278_43247309	0.706226	Hoxa6	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr18_+_69593361_69593450	0.70516	Hoxa6	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr10_-_20725023_20725078	0.697932	Hoxa6	ENSMUST00000020165.7|Pde7b|ENSMUSG00000019990.8|phosphodiesterase 7B
mm10_v2_chr10_-_53638269_53638269	0.690316	Hoxa6	ENSMUST00000164393.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chr5_+_13399309_13399382	0.683992	Hoxa6	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr16_-_88056176_88056176	0.682335	Hoxa6	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr6_+_17491216_17491242	0.674389	Hoxa6	ENSMUST00000080469.5|Met|ENSMUSG00000009376.9|met proto-oncogene
mm10_v2_chr4_-_92191749_92191749	0.669549	Hoxa6	ENSMUST00000123179.1|Gm12666|ENSMUSG00000066107.6|predicted gene 12666
mm10_v2_chr12_-_73047179_73047179	0.641117	Hoxa6	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr19_+_26749726_26749877	0.631076	Hoxa6	ENSMUST00000175842.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr9_+_46998931_46998931	0.626559	Hoxa6	ENSMUST00000178065.1|Gm4791|ENSMUSG00000094893.1|predicted gene 4791
mm10_v2_chr17_-_51810866_51810919	0.61477	Hoxa6	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr12_-_56613270_56613291	0.612853	Hoxa6	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr3_+_118430299_118430368	0.598759	Hoxa6	ENSMUST00000180774.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871
mm10_v2_chr4_+_5724304_5724357	0.598154	Hoxa6	ENSMUST00000108380.1|Fam110b|ENSMUSG00000049119.8|family with sequence similarity 110, member B
mm10_v2_chr12_-_34528844_34528904	0.58808	Hoxa6	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr1_+_177445660_177445821	0.585152	Hoxa6	ENSMUST00000077225.6|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr5_+_89028035_89028096	0.572408	Hoxa6	ENSMUST00000113216.2|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4 	ENSMUST00000134303.1|Slc4a4|ENSMUSG00000060961.8|solute carrier family 4 (anion exchanger), member 4
mm10_v2_chr11_+_78826575_78826618	0.543329	Hoxa6	ENSMUST00000147875.2|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9 	ENSMUST00000141321.1|Lyrm9|ENSMUSG00000072640.5|LYR motif containing 9
mm10_v2_chr7_-_115824699_115824752	0.52934	Hoxa6	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr19_-_19001099_19001119	0.517321	Hoxa6	ENSMUST00000040153.8|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta 	ENSMUST00000112828.1|Rorb|ENSMUSG00000036192.9|RAR-related orphan receptor beta
mm10_v2_chr13_-_91388079_91388090	0.509987	Hoxa6	ENSMUST00000181054.1|A830009L08Rik|ENSMUSG00000097182.1|RIKEN cDNA A830009L08 gene
mm10_v2_chr1_+_187997821_187997834	0.506156	Hoxa6	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr10_+_42860348_42860377	0.490154	Hoxa6	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr10_+_90576252_90576517	0.48335	Hoxa6	ENSMUST00000182427.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182053.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182113.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr16_+_43503607_43503642	0.480726	Hoxa6	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr5_-_123140135_123140289	0.468399	Hoxa6	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr4_-_21685782_21685805	0.467489	Hoxa6	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr7_+_49910112_49910146	0.463763	Hoxa6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr1_+_187997835_187997882	0.461578	Hoxa6	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr2_-_63184170_63184195	0.458042	Hoxa6	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr10_+_42860648_42860676	0.453896	Hoxa6	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr10_+_87859062_87859094	0.446288	Hoxa6	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr1_+_177444653_177444669	0.444552	Hoxa6	ENSMUST00000094276.3|Zbtb18|ENSMUSG00000063659.6|zinc finger and BTB domain containing 18
mm10_v2_chr13_-_105054895_105054930	0.442019	Hoxa6	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr3_-_59220150_59220259	0.435186	Hoxa6	ENSMUST00000170388.1|P2ry12|ENSMUSG00000036353.7|purinergic receptor P2Y, G-protein coupled 12
mm10_v2_chr1_+_19212054_19212106	0.418836	Hoxa6	ENSMUST00000064976.4|Tfap2b|ENSMUSG00000025927.7|transcription factor AP-2 beta
mm10_v2_chr5_+_117841839_117841857	0.410654	Hoxa6	ENSMUST00000142742.2|Nos1|ENSMUSG00000029361.12|nitric oxide synthase 1, neuronal
mm10_v2_chr9_-_40346290_40346337	0.393828	Hoxa6	ENSMUST00000121357.1|Gramd1b|ENSMUSG00000040111.8|GRAM domain containing 1B
mm10_v2_chr6_-_138421379_138421452	0.387885	Hoxa6	ENSMUST00000163065.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr12_+_21417872_21417911	0.375721	Hoxa6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr8_-_67974567_67974596	0.371338	Hoxa6	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr8_-_67818284_67818320	0.363343	Hoxa6	ENSMUST00000120071.1|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr10_-_35711891_35711891	0.354523	Hoxa6	ENSMUST00000080898.2|Amd2|ENSMUSG00000063953.2|S-adenosylmethionine decarboxylase 2
mm10_v2_chrM_+_2743_2761	0.349453	Hoxa6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr5_+_115235836_115235836	0.335392	Hoxa6	ENSMUST00000081497.6|Pop5|ENSMUSG00000060152.8|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm10_v2_chr16_-_64786321_64786321	0.318574	Hoxa6	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr15_+_18818895_18818947	0.316958	Hoxa6	ENSMUST00000166873.2|Cdh10|ENSMUSG00000022321.9|cadherin 10
mm10_v2_chr13_+_83732438_83732566	0.307781	Hoxa6	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr16_+_43235856_43235880	0.295662	Hoxa6	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_-_84679346_84679401	0.295079	Hoxa6	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr3_-_138131356_138131381	0.29184	Hoxa6	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr11_-_42182924_42182935	0.290602	Hoxa6	ENSMUST00000020707.5|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1 	ENSMUST00000132971.1|Gabra1|ENSMUSG00000010803.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
mm10_v2_chr10_+_42860776_42860810	0.289338	Hoxa6	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_+_9882622_9882646	0.27881	Hoxa6	ENSMUST00000114919.1|4930412O13Rik|ENSMUSG00000025783.2|RIKEN cDNA 4930412O13 gene
mm10_v2_chr18_+_42394539_42394575	0.274816	Hoxa6	ENSMUST00000025374.3|Pou4f3|ENSMUSG00000024497.3|POU domain, class 4, transcription factor 3
mm10_v2_chr8_-_67818218_67818269	0.26575	Hoxa6	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr9_-_119825456_119825456	0.265141	Hoxa6	ENSMUST00000070617.7|Scn11a|ENSMUSG00000034115.9|sodium channel, voltage-gated, type XI, alpha
mm10_v2_chr9_-_71163224_71163293	0.263035	Hoxa6	ENSMUST00000074465.2|Aqp9|ENSMUSG00000032204.7|aquaporin 9
mm10_v2_chr14_+_28511344_28511405	0.261389	Hoxa6	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr14_-_48667508_48667644	0.259515	Hoxa6	ENSMUST00000144465.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000133479.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000119070.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000152018.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr7_-_37772868_37772891	0.250911	Hoxa6	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr16_-_56024628_56024668	0.250724	Hoxa6	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr4_-_82850721_82850814	0.247223	Hoxa6	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr10_+_87859255_87859266	0.24546	Hoxa6	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr2_-_72986716_72986716	0.244857	Hoxa6	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr2_-_168767136_168767201	0.242175	Hoxa6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr13_-_97747399_97747414	0.236881	Hoxa6	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr19_-_53371766_53371766	0.236247	Hoxa6	ENSMUST00000086887.1|Gm10197|ENSMUSG00000067085.1|predicted gene 10197
mm10_v2_chr5_+_13398688_13398726	0.230033	Hoxa6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr13_+_80883403_80883422	0.228314	Hoxa6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr7_-_73541738_73541758	0.225104	Hoxa6	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr5_+_66968559_66968577	0.214234	Hoxa6	ENSMUST00000127184.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr10_+_99263224_99263240	0.203054	Hoxa6	ENSMUST00000020118.4|Dusp6|ENSMUSG00000019960.7|dual specificity phosphatase 6
mm10_v2_chr2_+_72297895_72297912	0.198958	Hoxa6	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr10_+_90576570_90576668	0.194944	Hoxa6	ENSMUST00000182786.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182600.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr5_+_34989473_34989549	0.193194	Hoxa6	ENSMUST00000114284.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12 	ENSMUST00000114285.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr18_+_54990280_54990315	0.155255	Hoxa6	ENSMUST00000181538.1|Gm4221|ENSMUSG00000096948.1|predicted gene 4221
mm10_v2_chr9_+_118478344_118478451	0.152288	Hoxa6	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr7_+_131542867_131542867	0.149475	Hoxa6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr5_-_62765618_62765656	0.126981	Hoxa6	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr19_+_26748268_26748474	0.122022	Hoxa6	ENSMUST00000175791.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000176698.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000177252.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000176475.1|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 	ENSMUST00000112637.2|Smarca2|ENSMUSG00000024921.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
mm10_v2_chr10_+_90576678_90576691	0.120157	Hoxa6	ENSMUST00000182284.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr2_-_33086366_33086447	0.111875	Hoxa6	ENSMUST00000049618.2|Garnl3|ENSMUSG00000038860.9|GTPase activating RANGAP domain-like 3
mm10_v2_chr9_-_112187898_112187938	0.111648	Hoxa6	ENSMUST00000178410.1|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21 	ENSMUST00000172380.3|Arpp21|ENSMUSG00000032503.11|cyclic AMP-regulated phosphoprotein, 21
mm10_v2_chr11_+_94044331_94044365	0.106138	Hoxa6	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr4_-_97584605_97584610	0.104934	Hoxa6	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr4_-_97584612_97584643	0.101818	Hoxa6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr10_-_116549101_116549163	0.099964	Hoxa6	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr2_-_168206875_168206922	0.0979313	Hoxa6	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr11_-_37235882_37235994	0.0941376	Hoxa6	ENSMUST00000102801.1|Tenm2|ENSMUSG00000049336.10|teneurin transmembrane protein 2
mm10_v2_chr11_+_94044241_94044273	0.0938884	Hoxa6	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr16_+_19028232_19028232	0.0913187	Hoxa6	ENSMUST00000074116.4|Gm10088|ENSMUSG00000060811.4|predicted gene 10088
mm10_v2_chr5_-_142817387_142817420	0.0848846	Hoxa6	ENSMUST00000036253.6|Tnrc18|ENSMUSG00000039477.10|trinucleotide repeat containing 18
mm10_v2_chr4_-_120815703_120815761	0.0662617	Hoxa6	ENSMUST00000120779.1|Nfyc|ENSMUSG00000032897.11|nuclear transcription factor-Y gamma
mm10_v2_chr4_+_107968332_107968424	0.0427537	Hoxa6	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr10_+_90576708_90576766	0.0369141	Hoxa6	ENSMUST00000182430.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182960.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182045.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182083.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr9_+_61372359_61372383	0.0336284	Hoxa6	ENSMUST00000178113.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159386.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr8_-_47352348_47352367	0.0313456	Hoxa6	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr3_-_8964037_8964101	0.017992	Hoxa6	ENSMUST00000091354.5|Tpd52|ENSMUSG00000027506.9|tumor protein D52 	ENSMUST00000094381.4|Tpd52|ENSMUSG00000027506.9|tumor protein D52
mm10_v2_chr2_-_168207063_168207142	0.0026663	Hoxa6	ENSMUST00000088001.5|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr11_+_94044194_94044238	0.00181091	Hoxa6	ENSMUST00000092777.4|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9 	ENSMUST00000075695.6|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
