mm10_v2_chr3_-_116129615_116129688	6.08356	Hoxd9	ENSMUST00000029574.8|Vcam1|ENSMUSG00000027962.10|vascular cell adhesion molecule 1
mm10_v2_chr18_-_78206408_78206440	4.37838	Hoxd9	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr6_-_36811361_36811361	4.25769	Hoxd9	ENSMUST00000101534.1|Ptn|ENSMUSG00000029838.8|pleiotrophin
mm10_v2_chr4_+_136143497_136143497	4.07022	Hoxd9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr7_+_66365905_66365905	3.68624	Hoxd9	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chrX_+_82948861_82948915	3.24847	Hoxd9	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr15_-_65014904_65014904	2.62408	Hoxd9	ENSMUST00000110100.2|Gm21961|ENSMUSG00000079024.2|predicted gene, 21961
mm10_v2_chr16_-_45693658_45693743	2.55982	Hoxd9	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr17_-_32166879_32166898	2.51236	Hoxd9	ENSMUST00000087723.3|Notch3|ENSMUSG00000038146.7|notch 3
mm10_v2_chr3_-_66296807_66296837	2.31339	Hoxd9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chrX_+_85048309_85048413	2.04947	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr8_+_84723003_84723022	2.0401	Hoxd9	ENSMUST00000098571.4|G430095P16Rik|ENSMUSG00000074203.4|RIKEN cDNA G430095P16 gene
mm10_v2_chr13_-_105271039_105271039	1.94034	Hoxd9	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr17_-_78684262_78684352	1.92541	Hoxd9	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr11_-_109472611_109472688	1.80072	Hoxd9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr11_+_29373618_29373777	1.76657	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr2_-_58052832_58052870	1.75088	Hoxd9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr15_-_37459327_37459380	1.46758	Hoxd9	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr1_-_163289214_163289235	1.3388	Hoxd9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr3_-_49757257_49757316	1.31993	Hoxd9	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr2_-_63184253_63184292	1.27926	Hoxd9	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr3_+_114030532_114030571	1.23141	Hoxd9	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr9_-_64172879_64172918	1.22122	Hoxd9	ENSMUST00000176299.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000130127.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000176794.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000177045.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein
mm10_v2_chr3_+_35754121_35754135	1.16456	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr7_-_16286744_16286795	1.15571	Hoxd9	ENSMUST00000150528.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000118976.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000146609.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9
mm10_v2_chr3_+_53845086_53845086	1.12476	Hoxd9	ENSMUST00000108014.1|Gm10985|ENSMUSG00000078742.1|predicted gene 10985
mm10_v2_chr5_-_77408034_77408051	1.11466	Hoxd9	ENSMUST00000163898.1|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7 	ENSMUST00000046746.6|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7
mm10_v2_chr7_+_67647405_67647456	1.0691	Hoxd9	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr19_-_57197435_57197460	1.06088	Hoxd9	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_120851183_120851201	1.03953	Hoxd9	ENSMUST00000106487.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000143322.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000106488.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase
mm10_v2_chr1_+_167598384_167598411	1.03865	Hoxd9	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr1_-_128102412_128102485	1.0089	Hoxd9	ENSMUST00000112538.1|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3 	ENSMUST00000086614.5|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr13_-_74376566_74376566	1.00883	Hoxd9	ENSMUST00000091481.2|Zfp72|ENSMUSG00000069184.2|zinc finger protein 72
mm10_v2_chr19_-_57197496_57197536	0.994485	Hoxd9	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr2_-_175131864_175131864	0.98491	Hoxd9	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr19_-_56548122_56548222	0.972714	Hoxd9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr7_-_103827922_103828096	0.966414	Hoxd9	ENSMUST00000023934.6|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain 	ENSMUST00000153218.1|Hbb-bs|ENSMUSG00000052305.5|hemoglobin, beta adult s chain
mm10_v2_chr19_-_57197377_57197417	0.965837	Hoxd9	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr1_+_167598450_167598480	0.920091	Hoxd9	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr2_-_84425258_84425411	0.875717	Hoxd9	ENSMUST00000074262.2|Calcrl|ENSMUSG00000059588.7|calcitonin receptor-like
mm10_v2_chr13_-_41273977_41273977	0.857641	Hoxd9	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr2_-_116064721_116064749	0.833154	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr7_+_127800604_127800696	0.796728	Hoxd9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr7_-_14562171_14562171	0.743449	Hoxd9	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr12_+_36314160_36314171	0.720806	Hoxd9	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr16_-_65562686_65562769	0.698619	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr15_+_39006272_39006365	0.677963	Hoxd9	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr1_+_183388981_183388981	0.677485	Hoxd9	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr19_-_56548013_56548046	0.642123	Hoxd9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr11_+_110968016_110968042	0.628654	Hoxd9	ENSMUST00000106636.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENSMUST00000180023.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16
mm10_v2_chr12_+_102128718_102128739	0.625122	Hoxd9	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr5_-_62766153_62766246	0.609214	Hoxd9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr17_-_45474839_45474938	0.608691	Hoxd9	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr2_-_63184170_63184195	0.604531	Hoxd9	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chrM_+_11734_11757	0.580546	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr16_+_10835046_10835084	0.553375	Hoxd9	ENSMUST00000037913.8|Rmi2|ENSMUSG00000037991.9|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
mm10_v2_chr19_+_23723279_23723279	0.515637	Hoxd9	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr16_+_44943737_44943752	0.501789	Hoxd9	ENSMUST00000114622.3|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3 	ENSMUST00000166731.1|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3
mm10_v2_chr5_+_63812447_63812538	0.461687	Hoxd9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr19_-_29753600_29753600	0.46023	Hoxd9	ENSMUST00000175764.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr19_+_56548254_56548283	0.43918	Hoxd9	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr1_+_180330470_180330493	0.404859	Hoxd9	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chr7_+_30565410_30565432	0.368167	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr1_+_180111339_180111339	0.344861	Hoxd9	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr9_-_96437434_96437434	0.296828	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr2_-_45117349_45117395	0.296131	Hoxd9	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr9_-_39604124_39604403	0.277825	Hoxd9	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chr2_+_30952955_30953016	0.238897	Hoxd9	ENSMUST00000028199.5|Tor1b|ENSMUSG00000026848.8|torsin family 1, member B
mm10_v2_chr14_-_75754475_75754563	0.228975	Hoxd9	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr14_-_118923070_118923167	0.216681	Hoxd9	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr5_-_62765618_62765656	0.20717	Hoxd9	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr16_-_50330987_50331017	0.201634	Hoxd9	ENSMUST00000114488.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr5_-_69590783_69590803	0.141527	Hoxd9	ENSMUST00000173927.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr13_+_49544443_49544533	0.120788	Hoxd9	ENSMUST00000177948.1|Aspn|ENSMUSG00000021388.7|asporin 	ENSMUST00000021820.6|Aspn|ENSMUSG00000021388.7|asporin
mm10_v2_chr10_-_127030789_127030812	0.118156	Hoxd9	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr8_+_84856982_84857036	0.104858	Hoxd9	ENSMUST00000003906.6|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit 	ENSMUST00000109754.1|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit
mm10_v2_chr9_-_21989427_21989456	0.0857817	Hoxd9	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr11_-_89538556_89538556	0.0782142	Hoxd9	ENSMUST00000169201.1|Ankfn1|ENSMUSG00000047773.6|ankyrin-repeat and fibronectin type III domain containing 1
mm10_v2_chr2_+_91526756_91526763	0.0760623	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chr1_-_168432270_168432347	0.0755515	Hoxd9	ENSMUST00000072863.4|Pbx1|ENSMUSG00000052534.9|pre B cell leukemia homeobox 1
mm10_v2_chrX_-_111697069_111697127	0.0750681	Hoxd9	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr2_+_65620829_65620857	0.0711728	Hoxd9	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr2_+_11172080_11172140	0.0668018	Hoxd9	ENSMUST00000114853.1|Prkcq|ENSMUSG00000026778.7|protein kinase C, theta
mm10_v2_chr14_-_100149764_100149764	0.0658631	Hoxd9	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr8_+_71887264_71887264	0.0408739	Hoxd9	ENSMUST00000034259.7|Zfp709|ENSMUSG00000056019.6|zinc finger protein 709
mm10_v2_chr8_+_79028317_79028437	0.0307921	Hoxd9	ENSMUST00000087927.4|Zfp827|ENSMUSG00000071064.7|zinc finger protein 827 	ENSMUST00000098614.2|Zfp827|ENSMUSG00000071064.7|zinc finger protein 827
mm10_v2_chr18_+_32067729_32067811	0.0156779	Hoxd9	ENSMUST00000025243.3|Iws1|ENSMUSG00000024384.3|IWS1 homolog (S. cerevisiae)
mm10_v2_chr15_+_81744848_81744848	0.0148705	Hoxd9	ENSMUST00000109554.1|Zc3h7b|ENSMUSG00000022390.10|zinc finger CCCH type containing 7B
mm10_v2_chr14_-_36919314_36919352	0.0128191	Hoxd9	ENSMUST00000182797.1|Ccser2|ENSMUSG00000058690.8|coiled-coil serine rich 2
mm10_v2_chr7_-_34313531_34313568	0.00829454	Hoxd9	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr13_+_58281183_58281196	0.00498538	Hoxd9	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
