mm10_v2_chr4_+_154960915_154960930	3.5311	Nanog	ENSMUST00000049621.6|Hes5|ENSMUSG00000048001.7|hairy and enhancer of split 5 (Drosophila)
mm10_v2_chrY_-_1245685_1245752	1.91499	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr18_-_78206408_78206440	1.58341	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr13_-_41273977_41273977	1.35811	Nanog	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr15_-_71954395_71954424	1.01266	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr2_+_20737306_20737321	0.962293	Nanog	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr10_+_58394381_58394395	0.869699	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr18_+_57142782_57142796	0.841059	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chrX_+_153237466_153237466	0.831333	Nanog	ENSMUST00000143880.1|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr13_-_51567084_51567084	0.796286	Nanog	ENSMUST00000021898.5|Shc3|ENSMUSG00000021448.6|src homology 2 domain-containing transforming protein C3
mm10_v2_chr10_-_42583628_42583639	0.752363	Nanog	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr15_-_66831625_66831668	0.739655	Nanog	ENSMUST00000164163.1|Sla|ENSMUSG00000022372.8|src-like adaptor
mm10_v2_chr10_+_58394361_58394380	0.721594	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr8_-_89044162_89044195	0.685357	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr7_-_115846080_115846112	0.646201	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr3_+_68869563_68869589	0.625685	Nanog	ENSMUST00000054551.2|1110032F04Rik|ENSMUSG00000046999.2|RIKEN cDNA 1110032F04 gene
mm10_v2_chr2_+_62664279_62664300	0.611942	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chrX_-_135009185_135009225	0.597706	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr12_+_108334341_108334406	0.590708	Nanog	ENSMUST00000021684.4|Cyp46a1|ENSMUSG00000021259.4|cytochrome P450, family 46, subfamily a, polypeptide 1
mm10_v2_chr19_-_36736653_36736670	0.562783	Nanog	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chrX_-_60893430_60893440	0.547045	Nanog	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr4_-_58553553_58553898	0.539658	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr14_+_65970610_65970621	0.5246	Nanog	ENSMUST00000127387.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr7_+_112742025_112742060	0.517375	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr14_+_65971049_65971074	0.509583	Nanog	ENSMUST00000128539.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr18_-_35215008_35215033	0.499828	Nanog	ENSMUST00000091636.3|Lrrtm2|ENSMUSG00000071862.2|leucine rich repeat transmembrane neuronal 2
mm10_v2_chr13_-_47106176_47106206	0.481143	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr9_-_15357692_15357788	0.474762	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr6_-_23132981_23132992	0.472574	Nanog	ENSMUST00000031707.7|Aass|ENSMUSG00000029695.7|aminoadipate-semialdehyde synthase
mm10_v2_chr2_+_116067213_116067250	0.470777	Nanog	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr14_+_65970804_65970903	0.454012	Nanog	ENSMUST00000138191.1|Clu|ENSMUSG00000022037.8|clusterin
mm10_v2_chr3_+_88081997_88082051	0.447371	Nanog	ENSMUST00000071812.5|Iqgap3|ENSMUSG00000028068.9|IQ motif containing GTPase activating protein 3
mm10_v2_chr6_+_71282280_71282280	0.437957	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr15_+_25773985_25774042	0.434886	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr17_+_46297406_46297483	0.428118	Nanog	ENSMUST00000061722.6|Dlk2|ENSMUSG00000047428.8|delta-like 2 homolog (Drosophila) 	ENSMUST00000166280.1|Dlk2|ENSMUSG00000047428.8|delta-like 2 homolog (Drosophila)
mm10_v2_chr5_+_33658567_33658616	0.421084	Nanog	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr18_+_77185815_77185879	0.418943	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr2_+_29060239_29060287	0.41887	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr10_+_39612934_39612934	0.409167	Nanog	ENSMUST00000019987.6|Traf3ip2|ENSMUSG00000019842.6|TRAF3 interacting protein 2
mm10_v2_chr15_-_50889043_50889054	0.400328	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr11_-_109298066_109298079	0.399461	Nanog	ENSMUST00000106706.1|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr5_+_33658123_33658160	0.392518	Nanog	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr7_+_113514085_113514109	0.385214	Nanog	ENSMUST00000122890.1|Far1|ENSMUSG00000030759.10|fatty acyl CoA reductase 1
mm10_v2_chr9_-_52168111_52168111	0.381249	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chrX_-_53269786_53269858	0.380109	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr13_-_9765137_9765321	0.379232	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr16_-_3872378_3872411	0.377387	Nanog	ENSMUST00000090522.4|Zfp597|ENSMUSG00000039789.7|zinc finger protein 597
mm10_v2_chr7_+_79660196_79660261	0.375307	Nanog	ENSMUST00000035977.7|Ticrr|ENSMUSG00000046591.9|TOPBP1-interacting checkpoint and replication regulator
mm10_v2_chrX_+_134308084_134308209	0.374015	Nanog	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chr11_-_40733373_40733442	0.37379	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr10_+_26772477_26772515	0.3721	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr12_-_101958148_101958246	0.366325	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr1_-_152625212_152625220	0.364185	Nanog	ENSMUST00000027760.7|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr11_+_86484647_86484716	0.356989	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr10_-_7212222_7212247	0.354041	Nanog	ENSMUST00000015346.5|Cnksr3|ENSMUSG00000015202.7|Cnksr family member 3
mm10_v2_chr3_+_62419668_62419668	0.351289	Nanog	ENSMUST00000161057.1|Arhgef26|ENSMUSG00000036885.8|Rho guanine nucleotide exchange factor (GEF) 26
mm10_v2_chr6_-_39725448_39725478	0.346635	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr12_+_109549157_109549301	0.345195	Nanog	ENSMUST00000128458.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3 	ENSMUST00000150851.1|Meg3|ENSMUSG00000021268.11|maternally expressed 3
mm10_v2_chr4_-_109665249_109665372	0.340829	Nanog	ENSMUST00000063531.4|Cdkn2c|ENSMUSG00000028551.8|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm10_v2_chr17_+_21691860_21691860	0.332782	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr5_+_33658550_33658563	0.33212	Nanog	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr19_+_7557473_7557497	0.331347	Nanog	ENSMUST00000141887.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136756.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr19_+_4003334_4003366	0.322491	Nanog	ENSMUST00000025806.3|Doc2g|ENSMUSG00000024871.4|double C2, gamma
mm10_v2_chr3_+_88965812_88965812	0.318256	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr3_+_114030532_114030571	0.317868	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr14_-_26971232_26971232	0.316986	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr3_+_37312514_37312575	0.313377	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr10_-_99126321_99126321	0.311583	Nanog	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr16_+_19760902_19761054	0.308358	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr19_-_32196393_32196428	0.30736	Nanog	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr2_+_164948219_164948245	0.306359	Nanog	ENSMUST00000017881.2|Mmp9|ENSMUSG00000017737.2|matrix metallopeptidase 9
mm10_v2_chr19_-_56822161_56822220	0.305628	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr1_-_52490736_52490736	0.302856	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chr8_-_25201349_25201459	0.297665	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr18_-_67245818_67245842	0.297438	Nanog	ENSMUST00000073054.3|Mppe1|ENSMUSG00000062526.3|metallophosphoesterase 1
mm10_v2_chr7_+_67647405_67647456	0.284991	Nanog	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr17_-_81649607_81649607	0.279676	Nanog	ENSMUST00000163680.2|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000086538.3|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1 	ENSMUST00000163123.1|Slc8a1|ENSMUSG00000054640.8|solute carrier family 8 (sodium/calcium exchanger), member 1
mm10_v2_chr11_+_109485606_109485713	0.279308	Nanog	ENSMUST00000106697.1|Arsg|ENSMUSG00000020604.7|arylsulfatase G
mm10_v2_chr11_+_62248977_62249011	0.277765	Nanog	ENSMUST00000018644.2|Adora2b|ENSMUSG00000018500.2|adenosine A2b receptor
mm10_v2_chr7_+_59228743_59228769	0.277525	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr7_-_6730412_6730431	0.272819	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr17_-_25727364_25727426	0.266876	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr7_+_49246131_49246202	0.266592	Nanog	ENSMUST00000064395.6|Nav2|ENSMUSG00000052512.9|neuron navigator 2
mm10_v2_chr9_-_7184440_7184518	0.265614	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr2_+_134786154_134786170	0.264493	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr19_+_7557452_7557465	0.263361	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr6_+_8259288_8259312	0.259063	Nanog	ENSMUST00000159335.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr6_+_38551334_38551493	0.254472	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr3_-_55055038_55055055	0.2498	Nanog	ENSMUST00000029368.2|Ccna1|ENSMUSG00000027793.2|cyclin A1
mm10_v2_chr19_-_9899450_9899533	0.240161	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr12_-_91384403_91384430	0.237741	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr3_+_10088173_10088173	0.23124	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr14_-_26534870_26534931	0.228483	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr12_+_35047180_35047230	0.22687	Nanog	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr13_-_9764943_9764994	0.226699	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr7_+_103550368_103550368	0.223868	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr17_-_59013264_59013372	0.221047	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr2_+_69897255_69897303	0.215051	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr11_-_109298090_109298118	0.213384	Nanog	ENSMUST00000106704.2|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr10_+_90576570_90576668	0.207587	Nanog	ENSMUST00000182786.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B 	ENSMUST00000182600.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr16_+_87454976_87454987	0.204582	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr2_-_176149825_176149825	0.204104	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr11_-_109298121_109298142	0.200488	Nanog	ENSMUST00000020920.3|Rgs9|ENSMUSG00000020599.7|regulator of G-protein signaling 9
mm10_v2_chr14_-_78536762_78536851	0.199462	Nanog	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr3_-_39359128_39359160	0.197871	Nanog	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr12_-_83921809_83921898	0.193624	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr11_-_94321957_94321988	0.18581	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr15_+_21111452_21111452	0.184997	Nanog	ENSMUST00000075132.6|Cdh12|ENSMUSG00000040452.8|cadherin 12
mm10_v2_chr4_+_109343029_109343081	0.178408	Nanog	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr7_-_6011010_6011010	0.177398	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chr12_-_111813834_111813858	0.17576	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr2_-_45112890_45113010	0.175109	Nanog	ENSMUST00000076836.6|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr15_-_13173607_13173644	0.174554	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr17_+_35841668_35841683	0.17414	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr2_-_144527341_144527424	0.173719	Nanog	ENSMUST00000163701.1|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1 	ENSMUST00000081982.5|Dzank1|ENSMUSG00000037259.9|double zinc ribbon and ankyrin repeat domains 1
mm10_v2_chr2_-_37703845_37703885	0.173282	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr13_+_24943144_24943164	0.173144	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr3_+_79884496_79884571	0.17021	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr15_-_103251465_103251705	0.16845	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr13_+_104178797_104178872	0.168098	Nanog	ENSMUST00000022225.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23 	ENSMUST00000069187.5|Trim23|ENSMUSG00000021712.8|tripartite motif-containing 23
mm10_v2_chr1_+_153874335_153874354	0.164131	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr3_+_65666223_65666259	0.163288	Nanog	ENSMUST00000099075.2|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000107848.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1 	ENSMUST00000161794.1|Lekr1|ENSMUSG00000074579.7|leucine, glutamate and lysine rich 1
mm10_v2_chr15_+_34453285_34453312	0.163202	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr2_-_173276144_173276189	0.156763	Nanog	ENSMUST00000139306.1|Pmepa1|ENSMUSG00000038400.9|prostate transmembrane protein, androgen induced 1
mm10_v2_chr7_-_100467149_100467190	0.156391	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr4_+_20008357_20008451	0.155991	Nanog	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr7_-_98656530_98656600	0.155142	Nanog	ENSMUST00000038359.4|2210018M11Rik|ENSMUSG00000035401.8|RIKEN cDNA 2210018M11 gene
mm10_v2_chr3_-_152193803_152193831	0.152137	Nanog	ENSMUST00000050073.6|Dnajb4|ENSMUSG00000028035.7|DnaJ (Hsp40) homolog, subfamily B, member 4
mm10_v2_chr7_+_64287665_64287676	0.152025	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr12_+_3891728_3891801	0.149197	Nanog	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr17_+_8849974_8850001	0.148352	Nanog	ENSMUST00000115720.1|Pde10a|ENSMUSG00000023868.9|phosphodiesterase 10A
mm10_v2_chr17_+_3397189_3397207	0.146295	Nanog	ENSMUST00000072156.6|Tiam2|ENSMUSG00000023800.8|T cell lymphoma invasion and metastasis 2
mm10_v2_chr5_-_16731074_16731074	0.145397	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chr5_-_147076482_147076586	0.144681	Nanog	ENSMUST00000016664.7|Lnx2|ENSMUSG00000016520.7|ligand of numb-protein X 2
mm10_v2_chr8_-_61902669_61902713	0.143443	Nanog	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr6_+_124829540_124829577	0.143267	Nanog	ENSMUST00000150120.1|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr10_-_25200110_25200178	0.142976	Nanog	ENSMUST00000100012.2|Akap7|ENSMUSG00000039166.9|A kinase (PRKA) anchor protein 7
mm10_v2_chr2_-_140066661_140066805	0.141996	Nanog	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr12_-_40037387_40037429	0.141404	Nanog	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr4_-_126968124_126968154	0.141166	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr3_-_146499721_146499803	0.140886	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr12_-_20900867_20900867	0.140182	Nanog	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr2_+_69897220_69897247	0.140136	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr13_-_12258093_12258134	0.139909	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr4_+_12906838_12906881	0.138132	Nanog	ENSMUST00000143186.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing 	ENSMUST00000183345.1|Triqk|ENSMUSG00000055963.6|triple QxxK/R motif containing
mm10_v2_chr6_+_124829582_124829688	0.134393	Nanog	ENSMUST00000024270.7|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr3_+_79884576_79884597	0.133543	Nanog	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr9_+_65890237_65890343	0.131992	Nanog	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr14_+_79515618_79515694	0.128302	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr13_-_19619820_19619830	0.127033	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr16_+_13671922_13671937	0.126384	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr7_+_110627650_110627669	0.125596	Nanog	ENSMUST00000033054.8|Adm|ENSMUSG00000030790.8|adrenomedullin
mm10_v2_chr5_-_124187150_124187225	0.124393	Nanog	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr7_-_63212514_63212531	0.124137	Nanog	ENSMUST00000032738.5|Chrna7|ENSMUSG00000030525.7|cholinergic receptor, nicotinic, alpha polypeptide 7
mm10_v2_chr11_+_75468040_75468096	0.122416	Nanog	ENSMUST00000043598.7|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2 	ENSMUST00000108435.1|Tlcd2|ENSMUSG00000038217.7|TLC domain containing 2
mm10_v2_chr9_+_113930934_113930987	0.120026	Nanog	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr5_+_19907774_19907861	0.119615	Nanog	ENSMUST00000115267.2|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr2_+_144527718_144527773	0.115982	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr8_-_34965631_34965714	0.115428	Nanog	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chr1_+_50927511_50927543	0.114292	Nanog	ENSMUST00000081851.3|Tmeff2|ENSMUSG00000026109.8|transmembrane protein with EGF-like and two follistatin-like domains 2
mm10_v2_chr6_+_8259327_8259350	0.11383	Nanog	ENSMUST00000159378.1|Gm16039|ENSMUSG00000089862.2|predicted gene 16039
mm10_v2_chr6_+_38551786_38551851	0.112835	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr2_-_25224653_25224702	0.111693	Nanog	ENSMUST00000043584.4|Tubb4b|ENSMUSG00000036752.4|tubulin, beta 4B class IVB
mm10_v2_chr2_-_116067391_116067444	0.110045	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr5_+_63812447_63812538	0.109581	Nanog	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr5_-_137684665_137684729	0.109565	Nanog	ENSMUST00000100544.4|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000031736.9|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2 	ENSMUST00000151839.1|Agfg2|ENSMUSG00000029722.9|ArfGAP with FG repeats 2
mm10_v2_chr13_-_92131494_92131680	0.107438	Nanog	ENSMUST00000099326.3|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2 	ENSMUST00000146492.1|Rasgrf2|ENSMUSG00000021708.10|RAS protein-specific guanine nucleotide-releasing factor 2
mm10_v2_chr14_+_61607455_61607482	0.106728	Nanog	ENSMUST00000051184.8|Kcnrg|ENSMUSG00000046168.8|potassium channel regulator
mm10_v2_chr1_-_153900198_153900210	0.104328	Nanog	ENSMUST00000123490.1|5830403L16Rik|ENSMUSG00000045968.6|RIKEN cDNA 5830403L16 gene
mm10_v2_chr11_-_82890541_82890626	0.102473	Nanog	ENSMUST00000092844.6|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000021033.9|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D 	ENSMUST00000018985.8|Rad51d|ENSMUSG00000018841.11|RAD51 homolog D
mm10_v2_chr17_+_35841491_35841515	0.101771	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr12_+_111814170_111814245	0.0996036	Nanog	ENSMUST00000021714.7|Zfyve21|ENSMUSG00000021286.7|zinc finger, FYVE domain containing 21
mm10_v2_chr18_+_24205303_24205348	0.0963936	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr8_+_110721462_110721486	0.0959203	Nanog	ENSMUST00000052457.8|Mtss1l|ENSMUSG00000033763.8|metastasis suppressor 1-like
mm10_v2_chr12_+_102128718_102128739	0.0957558	Nanog	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr6_+_71909046_71909076	0.0952127	Nanog	ENSMUST00000055296.8|Polr1a|ENSMUSG00000049553.9|polymerase (RNA) I polypeptide A
mm10_v2_chr5_-_124249758_124249782	0.0951137	Nanog	ENSMUST00000162812.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr10_-_9901079_9901250	0.0949228	Nanog	ENSMUST00000141722.1|Stxbp5|ENSMUSG00000019790.10|syntaxin binding protein 5 (tomosyn)
mm10_v2_chr5_+_121397936_121398004	0.0946482	Nanog	ENSMUST00000042163.8|Naa25|ENSMUSG00000042719.11|N(alpha)-acetyltransferase 25, NatB auxiliary subunit
mm10_v2_chr17_+_35379608_35379637	0.0914799	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr11_+_43151599_43151599	0.0896801	Nanog	ENSMUST00000077659.5|Atp10b|ENSMUSG00000055415.7|ATPase, class V, type 10B
mm10_v2_chr17_-_47834682_47834691	0.0870983	Nanog	ENSMUST00000066368.6|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr12_-_83921899_83921934	0.0860457	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr6_-_108185552_108185587	0.0838603	Nanog	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr7_+_28693032_28693144	0.0817062	Nanog	ENSMUST00000151227.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27 	ENSMUST00000108281.1|Fbxo27|ENSMUSG00000037463.8|F-box protein 27
mm10_v2_chr1_+_174501796_174501843	0.0815939	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr7_+_25267669_25267723	0.081099	Nanog	ENSMUST00000169266.1|Cic|ENSMUSG00000005442.7|capicua homolog (Drosophila)
mm10_v2_chr5_+_135168382_135168442	0.079842	Nanog	ENSMUST00000111187.3|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B 	ENSMUST00000111188.1|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr13_+_111686303_111686351	0.0795472	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr13_-_3893556_3893589	0.0793615	Nanog	ENSMUST00000099946.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr15_-_51991679_51991760	0.077675	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr3_-_54915867_54915887	0.0750492	Nanog	ENSMUST00000070342.3|Sertm1|ENSMUSG00000056306.5|serine rich and transmembrane domain containing 1
mm10_v2_chr3_+_54481429_54481429	0.0721111	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr2_+_112379204_112379253	0.070585	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr9_+_92309362_92309386	0.0649627	Nanog	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr5_-_103977360_103977403	0.0647473	Nanog	ENSMUST00000048118.8|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr18_+_82554463_82554583	0.0635806	Nanog	ENSMUST00000062446.7|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000102812.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000075372.5|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000080658.4|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000152071.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000114674.3|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000142850.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000133193.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000123251.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000153478.1|Mbp|ENSMUSG00000041607.10|myelin basic protein 	ENSMUST00000132369.1|Mbp|ENSMUSG00000041607.10|myelin basic protein
mm10_v2_chr17_-_25833361_25833402	0.0617033	Nanog	ENSMUST00000044911.8|Stub1|ENSMUSG00000039615.8|STIP1 homology and U-Box containing protein 1
mm10_v2_chr5_+_135806859_135806902	0.0615478	Nanog	ENSMUST00000126232.1|Srrm3|ENSMUSG00000039860.13|serine/arginine repetitive matrix 3
mm10_v2_chr5_+_25246775_25246802	0.0612685	Nanog	ENSMUST00000144971.1|Galnt11|ENSMUSG00000038072.8|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
mm10_v2_chr2_+_130274437_130274492	0.0601839	Nanog	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr10_-_81364846_81364859	0.0601451	Nanog	ENSMUST00000131736.1|4930404N11Rik|ENSMUSG00000020234.4|RIKEN cDNA 4930404N11 gene
mm10_v2_chr5_+_135168283_135168373	0.0570044	Nanog	ENSMUST00000031692.5|Bcl7b|ENSMUSG00000029681.6|B cell CLL/lymphoma 7B
mm10_v2_chr9_+_109096659_109096710	0.0554386	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr4_+_126024506_126024550	0.0543958	Nanog	ENSMUST00000106162.1|Csf3r|ENSMUSG00000028859.8|colony stimulating factor 3 receptor (granulocyte)
mm10_v2_chr15_+_78428650_78428671	0.0536943	Nanog	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr2_-_86347764_86347764	0.0532164	Nanog	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr13_+_96082158_96082158	0.0531439	Nanog	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr2_-_167062981_167063048	0.0525841	Nanog	ENSMUST00000048988.7|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr7_-_144939823_144939869	0.0519101	Nanog	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr5_+_19907502_19907551	0.0504788	Nanog	ENSMUST00000101558.3|Magi2|ENSMUSG00000040003.11|membrane associated guanylate kinase, WW and PDZ domain containing 2
mm10_v2_chr15_+_78428564_78428636	0.0504626	Nanog	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr10_+_53337686_53337724	0.0494336	Nanog	ENSMUST00000046221.6|Pln|ENSMUSG00000038583.6|phospholamban 	ENSMUST00000163319.1|Pln|ENSMUSG00000038583.6|phospholamban
mm10_v2_chr18_+_35553401_35553421	0.0478604	Nanog	ENSMUST00000181664.1|Snhg4|ENSMUSG00000097769.1|small nucleolar RNA host gene 4 (non-protein coding)
mm10_v2_chrX_-_56822308_56822346	0.0475265	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr8_+_46490968_46490995	0.0464793	Nanog	ENSMUST00000110372.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1 	ENSMUST00000130563.1|Acsl1|ENSMUSG00000018796.6|acyl-CoA synthetase long-chain family member 1
mm10_v2_chr1_-_60566708_60566769	0.0439146	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr7_+_28392916_28393013	0.0435577	Nanog	ENSMUST00000003529.8|Paf1|ENSMUSG00000003437.8|Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
mm10_v2_chr10_+_42502197_42502290	0.0433266	Nanog	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr10_+_69785507_69785525	0.0422035	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr10_-_109010955_109010983	0.0417441	Nanog	ENSMUST00000105276.1|Syt1|ENSMUSG00000035864.8|synaptotagmin I 	ENSMUST00000064054.7|Syt1|ENSMUSG00000035864.8|synaptotagmin I
mm10_v2_chr2_+_32363680_32363810	0.0416592	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr16_+_13671858_13671918	0.0410775	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr2_+_3513035_3513074	0.0399187	Nanog	ENSMUST00000036350.2|Cdnf|ENSMUSG00000039496.2|cerebral dopamine neurotrophic factor
mm10_v2_chr1_+_146497614_146497707	0.0384605	Nanog	ENSMUST00000132847.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3 	ENSMUST00000166814.1|Brinp3|ENSMUSG00000035131.8|bone morphogenetic protein/retinoic acid inducible neural specific 3
mm10_v2_chr9_-_44305595_44305688	0.035697	Nanog	ENSMUST00000034629.4|Hinfp|ENSMUSG00000032119.4|histone H4 transcription factor
mm10_v2_chr2_+_18064564_18064644	0.0356624	Nanog	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chrX_+_7822289_7822289	0.0351473	Nanog	ENSMUST00000009875.4|Kcnd1|ENSMUSG00000009731.4|potassium voltage-gated channel, Shal-related family, member 1
mm10_v2_chr6_-_50456085_50456174	0.0337704	Nanog	ENSMUST00000146341.1|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3 	ENSMUST00000071728.4|Osbpl3|ENSMUSG00000029822.9|oxysterol binding protein-like 3
mm10_v2_chr4_+_116708467_116708509	0.033667	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr2_+_130576170_130576176	0.0336394	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr6_-_8259098_8259173	0.0335979	Nanog	ENSMUST00000012627.4|Rpa3|ENSMUSG00000012483.4|replication protein A3
mm10_v2_chr7_+_89404356_89404367	0.0316705	Nanog	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr11_-_23895208_23895280	0.0308119	Nanog	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr3_-_110143937_110144011	0.0288444	Nanog	ENSMUST00000051253.3|Ntng1|ENSMUSG00000050836.3|netrin G1
mm10_v2_chr13_+_4233730_4233758	0.0268067	Nanog	ENSMUST00000081326.6|Akr1c19|ENSMUSG00000071551.6|aldo-keto reductase family 1, member C19
mm10_v2_chr14_+_73237891_73238007	0.0254637	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr17_-_32800938_32800938	0.024648	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr2_+_115581667_115581743	0.0237302	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr11_+_97685903_97685966	0.0226085	Nanog	ENSMUST00000107583.2|Cisd3|ENSMUSG00000078695.2|CDGSH iron sulfur domain 3
mm10_v2_chr1_-_158814469_158814469	0.0223434	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr11_-_20332689_20332774	0.0220317	Nanog	ENSMUST00000109594.1|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr7_+_119561699_119561726	0.0213204	Nanog	ENSMUST00000167935.2|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2 	ENSMUST00000130583.1|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2
mm10_v2_chr11_-_107337556_107337637	0.0208786	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr1_+_135584773_135584773	0.0196541	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr6_+_125145235_125145251	0.0190511	Nanog	ENSMUST00000119527.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000088276.6|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000051171.7|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1 	ENSMUST00000117675.1|Iffo1|ENSMUSG00000038271.11|intermediate filament family orphan 1
mm10_v2_chr1_+_169655493_169655508	0.0174797	Nanog	ENSMUST00000027997.3|Rgs5|ENSMUSG00000026678.5|regulator of G-protein signaling 5
mm10_v2_chr15_+_9436028_9436083	0.016541	Nanog	ENSMUST00000042360.3|Capsl|ENSMUSG00000039676.3|calcyphosine-like
mm10_v2_chr5_-_99978914_99978966	0.0160345	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr16_+_13671980_13672032	0.0156952	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr10_+_75037066_75037100	0.0154784	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr9_+_108490676_108490692	0.0119478	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr4_-_149454971_149454986	0.0102074	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr1_-_186117251_186117310	0.00944701	Nanog	ENSMUST00000045388.7|Lyplal1|ENSMUSG00000039246.7|lysophospholipase-like 1
mm10_v2_chr17_-_51826562_51826601	0.00938029	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr11_-_20332654_20332688	0.00867566	Nanog	ENSMUST00000004634.6|Slc1a4|ENSMUSG00000020142.6|solute carrier family 1 (glutamate/neutral amino acid transporter), member 4
mm10_v2_chr16_+_13358375_13358439	0.00605124	Nanog	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr15_+_80255184_80255263	0.00562663	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr6_+_29348069_29348123	0.00363866	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr16_+_32877775_32877831	0.00312512	Nanog	ENSMUST00000023489.4|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1 	ENSMUST00000171325.1|Fyttd1|ENSMUSG00000022800.7|forty-two-three domain containing 1
mm10_v2_chr7_+_128246812_128246948	0.00143093	Nanog	ENSMUST00000164710.1|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1 	ENSMUST00000070656.5|Tgfb1i1|ENSMUSG00000030782.9|transforming growth factor beta 1 induced transcript 1
mm10_v2_chr8_-_105568298_105568298	0.00117846	Nanog	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
