mm10_v2_chr3_+_55782500_55782521	9.70992	Nkx1-1_Nkx1-2	ENSMUST00000075422.4|Mab21l1|ENSMUSG00000056947.4|mab-21-like 1 (C. elegans)
mm10_v2_chrX_-_60893430_60893440	8.14005	Nkx1-1_Nkx1-2	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chr6_-_23248264_23248390	5.24255	Nkx1-1_Nkx1-2	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr5_+_140607334_140607352	4.50548	Nkx1-1_Nkx1-2	ENSMUST00000031555.1|Lfng|ENSMUSG00000029570.1|LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
mm10_v2_chr14_+_46760526_46760557	2.21892	Nkx1-1_Nkx1-2	ENSMUST00000067426.4|Cdkn3|ENSMUSG00000037628.9|cyclin-dependent kinase inhibitor 3
mm10_v2_chr13_-_102906046_102906111	2.20141	Nkx1-1_Nkx1-2	ENSMUST00000171791.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr6_-_124779686_124779742	2.18305	Nkx1-1_Nkx1-2	ENSMUST00000147669.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000128697.1|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000032218.3|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23 	ENSMUST00000112475.2|Lrrc23|ENSMUSG00000030125.5|leucine rich repeat containing 23
mm10_v2_chr5_+_9100681_9100778	2.06362	Nkx1-1_Nkx1-2	ENSMUST00000115365.1|Tmem243|ENSMUSG00000079659.1|transmembrane protein 243, mitochondrial
mm10_v2_chr13_-_102905740_102905814	2.02554	Nkx1-1_Nkx1-2	ENSMUST00000167462.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr7_-_143460989_143461050	1.9967	Nkx1-1_Nkx1-2	ENSMUST00000167912.1|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57) 	ENSMUST00000037287.6|Cdkn1c|ENSMUSG00000037664.6|cyclin-dependent kinase inhibitor 1C (P57)
mm10_v2_chr11_-_87108656_87108719	1.82022	Nkx1-1_Nkx1-2	ENSMUST00000051395.8|Prr11|ENSMUSG00000020493.8|proline rich 11
mm10_v2_chr12_-_40037387_40037429	1.67807	Nkx1-1_Nkx1-2	ENSMUST00000146905.1|Arl4a|ENSMUSG00000047446.12|ADP-ribosylation factor-like 4A
mm10_v2_chr14_-_8666236_8666279	1.62088	Nkx1-1_Nkx1-2	ENSMUST00000102996.3|4930452B06Rik|ENSMUSG00000021747.11|RIKEN cDNA 4930452B06 gene
mm10_v2_chr19_+_5490475_5490487	1.21657	Nkx1-1_Nkx1-2	ENSMUST00000116560.2|Cfl1|ENSMUSG00000056201.6|cofilin 1, non-muscle
mm10_v2_chr16_+_52031549_52031570	1.20678	Nkx1-1_Nkx1-2	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr3_+_94372794_94372872	1.19619	Nkx1-1_Nkx1-2	ENSMUST00000029795.3|Rorc|ENSMUSG00000028150.8|RAR-related orphan receptor gamma
mm10_v2_chr4_-_141599835_141600032	1.16826	Nkx1-1_Nkx1-2	ENSMUST00000141518.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000127455.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000105784.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1 	ENSMUST00000147785.1|Fblim1|ENSMUSG00000006219.6|filamin binding LIM protein 1
mm10_v2_chrX_+_106015699_106015759	1.13225	Nkx1-1_Nkx1-2	ENSMUST00000033582.4|Cox7b|ENSMUSG00000031231.4|cytochrome c oxidase subunit VIIb
mm10_v2_chr10_-_88146867_88146941	1.06388	Nkx1-1_Nkx1-2	ENSMUST00000164121.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000164803.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000168163.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000048518.9|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein
mm10_v2_chr18_+_4993795_4993819	1.03269	Nkx1-1_Nkx1-2	ENSMUST00000153016.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chr9_+_66126611_66126649	0.95524	Nkx1-1_Nkx1-2	ENSMUST00000034945.5|Fam96a|ENSMUSG00000032381.5|family with sequence similarity 96, member A
mm10_v2_chr4_-_119294520_119294604	0.90212	Nkx1-1_Nkx1-2	ENSMUST00000079644.6|Ybx1|ENSMUSG00000028639.8|Y box protein 1
mm10_v2_chr14_-_52104015_52104028	0.881095	Nkx1-1_Nkx1-2	ENSMUST00000111610.4|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C 	ENSMUST00000164655.1|Hnrnpc|ENSMUSG00000060373.8|heterogeneous nuclear ribonucleoprotein C
mm10_v2_chr11_+_43681998_43682036	0.867245	Nkx1-1_Nkx1-2	ENSMUST00000061070.5|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr5_+_138187485_138187521	0.803296	Nkx1-1_Nkx1-2	ENSMUST00000110934.2|Cnpy4|ENSMUSG00000036968.9|canopy 4 homolog (zebrafish)
mm10_v2_chr9_-_100486788_100486788	0.790394	Nkx1-1_Nkx1-2	ENSMUST00000098458.3|Il20rb|ENSMUSG00000044244.12|interleukin 20 receptor beta
mm10_v2_chr10_+_88147061_88147076	0.787084	Nkx1-1_Nkx1-2	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr11_+_43682038_43682060	0.766779	Nkx1-1_Nkx1-2	ENSMUST00000094294.4|Pwwp2a|ENSMUSG00000044950.7|PWWP domain containing 2A
mm10_v2_chr10_+_88146992_88147037	0.76128	Nkx1-1_Nkx1-2	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr4_-_140774196_140774236	0.756306	Nkx1-1_Nkx1-2	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr10_+_128337761_128337832	0.70913	Nkx1-1_Nkx1-2	ENSMUST00000005826.7|Cs|ENSMUSG00000005683.7|citrate synthase
mm10_v2_chr11_-_21371143_21371221	0.695888	Nkx1-1_Nkx1-2	ENSMUST00000060895.5|Ugp2|ENSMUSG00000001891.10|UDP-glucose pyrophosphorylase 2
mm10_v2_chr7_+_101896340_101896431	0.691271	Nkx1-1_Nkx1-2	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr11_+_87109221_87109239	0.68169	Nkx1-1_Nkx1-2	ENSMUST00000020794.5|Ska2|ENSMUSG00000020492.5|spindle and kinetochore associated complex subunit 2
mm10_v2_chr17_-_48432723_48432741	0.64647	Nkx1-1_Nkx1-2	ENSMUST00000046549.3|Apobec2|ENSMUSG00000040694.3|apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2
mm10_v2_chr4_-_14621669_14621786	0.64071	Nkx1-1_Nkx1-2	ENSMUST00000143105.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr2_+_119047116_119047121	0.622873	Nkx1-1_Nkx1-2	ENSMUST00000152380.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000099542.2|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr7_-_27195727_27195768	0.606349	Nkx1-1_Nkx1-2	ENSMUST00000163311.2|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A 	ENSMUST00000126211.1|Snrpa|ENSMUSG00000061479.9|small nuclear ribonucleoprotein polypeptide A
mm10_v2_chr7_+_128744870_128745020	0.57449	Nkx1-1_Nkx1-2	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr12_+_84417196_84417254	0.503518	Nkx1-1_Nkx1-2	ENSMUST00000183146.1|Rnf113a2|ENSMUSG00000098134.1|ring finger protein 113A2
mm10_v2_chr3_-_89101907_89101969	0.500143	Nkx1-1_Nkx1-2	ENSMUST00000081848.8|Fdps|ENSMUSG00000059743.8|farnesyl diphosphate synthetase
mm10_v2_chr10_+_94575257_94575295	0.474965	Nkx1-1_Nkx1-2	ENSMUST00000121471.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr14_-_59365410_59365461	0.473462	Nkx1-1_Nkx1-2	ENSMUST00000161031.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D 	ENSMUST00000160425.1|Phf11d|ENSMUSG00000068245.8|PHD finger protein 11D
mm10_v2_chr3_-_116424007_116424032	0.448769	Nkx1-1_Nkx1-2	ENSMUST00000090464.4|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr8_+_33599608_33599655	0.43143	Nkx1-1_Nkx1-2	ENSMUST00000009774.9|Ppp2cb|ENSMUSG00000009630.9|protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform
mm10_v2_chr3_-_116423930_116423993	0.425078	Nkx1-1_Nkx1-2	ENSMUST00000106491.2|Cdc14a|ENSMUSG00000033502.8|CDC14 cell division cycle 14A
mm10_v2_chr2_+_119047129_119047159	0.419988	Nkx1-1_Nkx1-2	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr15_+_81663889_81663958	0.402939	Nkx1-1_Nkx1-2	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr11_-_43747963_43748015	0.389323	Nkx1-1_Nkx1-2	ENSMUST00000048578.2|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1 	ENSMUST00000109278.1|Ttc1|ENSMUSG00000041278.4|tetratricopeptide repeat domain 1
mm10_v2_chr9_-_20959785_20959888	0.384438	Nkx1-1_Nkx1-2	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr11_-_99230998_99231019	0.375901	Nkx1-1_Nkx1-2	ENSMUST00000103133.3|Smarce1|ENSMUSG00000037935.10|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
mm10_v2_chr17_-_63863791_63863791	0.37566	Nkx1-1_Nkx1-2	ENSMUST00000050753.3|A930002H24Rik|ENSMUSG00000045506.3|RIKEN cDNA A930002H24 gene
mm10_v2_chr9_-_44113470_44113528	0.372441	Nkx1-1_Nkx1-2	ENSMUST00000056328.5|Rnf26|ENSMUSG00000053128.8|ring finger protein 26
mm10_v2_chr7_+_101896817_101896961	0.36613	Nkx1-1_Nkx1-2	ENSMUST00000143835.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr14_-_5863663_5863663	0.337215	Nkx1-1_Nkx1-2	ENSMUST00000178594.1|Gm8237|ENSMUSG00000090707.2|predicted gene 8237
mm10_v2_chrY_+_90785442_90785586	0.334321	Nkx1-1_Nkx1-2	ENSMUST00000177591.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000177671.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1 	ENSMUST00000179077.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr2_-_69712461_69712606	0.329278	Nkx1-1_Nkx1-2	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr4_-_14621494_14621506	0.301959	Nkx1-1_Nkx1-2	ENSMUST00000149633.1|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chr1_-_172027269_172027313	0.294938	Nkx1-1_Nkx1-2	ENSMUST00000027837.6|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila) 	ENSMUST00000111264.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr4_-_14621805_14621819	0.229283	Nkx1-1_Nkx1-2	ENSMUST00000042221.7|Slc26a7|ENSMUSG00000040569.7|solute carrier family 26, member 7
mm10_v2_chrX_+_170009892_170009892	0.223139	Nkx1-1_Nkx1-2	ENSMUST00000180251.1|Gm21887|ENSMUSG00000095562.1|predicted gene, 21887
mm10_v2_chr14_+_4198185_4198185	0.182298	Nkx1-1_Nkx1-2	ENSMUST00000180184.1|Gm2974|ENSMUSG00000079391.4|predicted gene 2974
mm10_v2_chr3_-_34351685_34351715	0.181523	Nkx1-1_Nkx1-2	ENSMUST00000174114.1|Gm20514|ENSMUSG00000092355.1|predicted gene 20514
mm10_v2_chr7_+_29983948_29983964	0.176315	Nkx1-1_Nkx1-2	ENSMUST00000148442.1|Zfp568|ENSMUSG00000074221.5|zinc finger protein 568
mm10_v2_chr4_-_132075250_132075292	0.171375	Nkx1-1_Nkx1-2	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr7_-_30552255_30552316	0.169837	Nkx1-1_Nkx1-2	ENSMUST00000108165.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749 	ENSMUST00000153594.1|BC053749|ENSMUSG00000036864.8|cDNA sequence BC053749
mm10_v2_chr14_-_6266620_6266620	0.167477	Nkx1-1_Nkx1-2	ENSMUST00000096172.5|Gm3411|ENSMUSG00000079396.3|predicted gene 3411
mm10_v2_chrX_-_160138375_160138435	0.159677	Nkx1-1_Nkx1-2	ENSMUST00000033662.8|Pdha1|ENSMUSG00000031299.10|pyruvate dehydrogenase E1 alpha 1
mm10_v2_chr2_+_151494182_151494203	0.158557	Nkx1-1_Nkx1-2	ENSMUST00000089140.6|Nsfl1c|ENSMUSG00000027455.10|NSFL1 (p97) cofactor (p47)
mm10_v2_chr2_-_132247747_132247807	0.150185	Nkx1-1_Nkx1-2	ENSMUST00000110163.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000180286.1|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230 	ENSMUST00000028816.2|Tmem230|ENSMUSG00000027341.4|transmembrane protein 230
mm10_v2_chr3_-_90389884_90389927	0.138644	Nkx1-1_Nkx1-2	ENSMUST00000029541.5|Slc27a3|ENSMUSG00000027932.8|solute carrier family 27 (fatty acid transporter), member 3
mm10_v2_chr5_+_138116903_138117041	0.126885	Nkx1-1_Nkx1-2	ENSMUST00000062350.8|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110961.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000080732.3|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110960.2|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000142185.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000136425.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21 	ENSMUST00000110959.1|Zscan21|ENSMUSG00000037017.9|zinc finger and SCAN domain containing 21
mm10_v2_chrY_+_90784738_90784738	0.124311	Nkx1-1_Nkx1-2	ENSMUST00000179483.1|Erdr1|ENSMUSG00000096768.1|erythroid differentiation regulator 1
mm10_v2_chr5_-_137072254_137072277	0.112705	Nkx1-1_Nkx1-2	ENSMUST00000077523.3|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1 	ENSMUST00000041388.4|Serpine1|ENSMUSG00000037411.4|serine (or cysteine) peptidase inhibitor, clade E, member 1
mm10_v2_chr15_+_75993756_75993832	0.102379	Nkx1-1_Nkx1-2	ENSMUST00000089669.4|Mapk15|ENSMUSG00000063704.6|mitogen-activated protein kinase 15
mm10_v2_chrM_+_8600_8616	0.0899646	Nkx1-1_Nkx1-2	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chr2_-_37703845_37703885	0.0898283	Nkx1-1_Nkx1-2	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chrX_+_107255878_107256064	0.0892729	Nkx1-1_Nkx1-2	ENSMUST00000101294.2|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000118820.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174 	ENSMUST00000120971.1|Gpr174|ENSMUSG00000073008.5|G protein-coupled receptor 174
mm10_v2_chr9_-_107872403_107872422	0.08377	Nkx1-1_Nkx1-2	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr1_+_174501796_174501843	0.0834145	Nkx1-1_Nkx1-2	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr6_+_68161415_68161415	0.0718872	Nkx1-1_Nkx1-2	ENSMUST00000168090.1|Igkv1-115|ENSMUSG00000091800.1|immunoglobulin kappa variable 1-115
mm10_v2_chr5_+_115605642_115605696	0.0587817	Nkx1-1_Nkx1-2	ENSMUST00000094427.3|Gcn1l1|ENSMUSG00000041638.12|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)
mm10_v2_chr9_-_54661870_54661912	0.0587417	Nkx1-1_Nkx1-2	ENSMUST00000034822.5|Acsbg1|ENSMUSG00000032281.5|acyl-CoA synthetase bubblegum family member 1
mm10_v2_chr5_-_34660068_34660148	0.0533483	Nkx1-1_Nkx1-2	ENSMUST00000041364.9|Nop14|ENSMUSG00000036693.9|NOP14 nucleolar protein
mm10_v2_chr2_-_165388245_165388315	0.038101	Nkx1-1_Nkx1-2	ENSMUST00000103084.3|Zfp334|ENSMUSG00000017667.9|zinc finger protein 334
mm10_v2_chr7_+_51880312_51880356	0.031557	Nkx1-1_Nkx1-2	ENSMUST00000145049.1|Gas2|ENSMUSG00000030498.8|growth arrest specific 2
mm10_v2_chr8_+_83972951_83973028	0.0193677	Nkx1-1_Nkx1-2	ENSMUST00000005606.6|Prkaca|ENSMUSG00000005469.9|protein kinase, cAMP dependent, catalytic, alpha
mm10_v2_chr7_-_100964371_100964395	0.00360236	Nkx1-1_Nkx1-2	ENSMUST00000060174.4|P2ry6|ENSMUSG00000048779.4|pyrimidinergic receptor P2Y, G-protein coupled, 6
mm10_v2_chr7_-_38019505_38019552	0.00200767	Nkx1-1_Nkx1-2	ENSMUST00000085513.4|Uri1|ENSMUSG00000030421.8|URI1, prefoldin-like chaperone
mm10_v2_chr6_+_29694204_29694250	0.000498298	Nkx1-1_Nkx1-2	ENSMUST00000046750.7|Tspan33|ENSMUSG00000001763.8|tetraspanin 33 	ENSMUST00000115250.3|Tspan33|ENSMUSG00000001763.8|tetraspanin 33
