mm10_v2_chr2_-_36105271_36105434	7.12232	Pax1_Pax9	ENSMUST00000112960.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112967.5|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112963.1|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr12_-_90969768_90969790	2.5578	Pax1_Pax9	ENSMUST00000181184.1|4930544I03Rik|ENSMUSG00000097071.1|RIKEN cDNA 4930544I03 gene
mm10_v2_chr4_-_143299498_143299564	2.54374	Pax1_Pax9	ENSMUST00000030317.7|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr4_-_143299463_143299482	2.49103	Pax1_Pax9	ENSMUST00000119654.1|Pdpn|ENSMUSG00000028583.8|podoplanin
mm10_v2_chr5_-_129787175_129787259	0.913705	Pax1_Pax9	ENSMUST00000031399.6|Psph|ENSMUSG00000029446.8|phosphoserine phosphatase
mm10_v2_chr9_-_22389113_22389206	0.787054	Pax1_Pax9	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr19_-_29047847_29047977	0.606921	Pax1_Pax9	ENSMUST00000025696.4|Ak3|ENSMUSG00000024782.7|adenylate kinase 3
mm10_v2_chr18_+_69344503_69344530	0.564225	Pax1_Pax9	ENSMUST00000114985.3|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr13_-_62607499_62607499	0.448095	Pax1_Pax9	ENSMUST00000091563.4|6720489N17Rik|ENSMUSG00000072066.3|RIKEN cDNA 6720489N17 gene
mm10_v2_chr5_+_112255813_112255874	0.431731	Pax1_Pax9	ENSMUST00000031286.6|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000131673.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1 	ENSMUST00000112375.1|Crybb1|ENSMUSG00000029343.11|crystallin, beta B1
mm10_v2_chr4_+_11558914_11558979	0.42383	Pax1_Pax9	ENSMUST00000178703.1|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000095145.5|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000108306.2|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae) 	ENSMUST00000070755.6|Rad54b|ENSMUSG00000078773.5|RAD54 homolog B (S. cerevisiae)
mm10_v2_chrX_+_74313014_74313109	0.35269	Pax1_Pax9	ENSMUST00000114160.1|Fam50a|ENSMUSG00000001962.8|family with sequence similarity 50, member A
mm10_v2_chr3_-_117360876_117360876	0.308531	Pax1_Pax9	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr4_+_115000156_115000170	0.307094	Pax1_Pax9	ENSMUST00000030490.6|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr4_+_115000174_115000189	0.265154	Pax1_Pax9	ENSMUST00000129957.1|Stil|ENSMUSG00000028718.10|Scl/Tal1 interrupting locus
mm10_v2_chr13_-_62520451_62520544	0.252607	Pax1_Pax9	ENSMUST00000082203.6|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934 	ENSMUST00000101547.4|Zfp934|ENSMUSG00000074865.4|zinc finger protein 934
mm10_v2_chr8_+_94838321_94838429	0.220528	Pax1_Pax9	ENSMUST00000034234.8|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast) 	ENSMUST00000159871.1|Coq9|ENSMUSG00000031782.8|coenzyme Q9 homolog (yeast)
mm10_v2_chr2_+_84734050_84734107	0.162463	Pax1_Pax9	ENSMUST00000090729.2|Ypel4|ENSMUSG00000034059.7|yippee-like 4 (Drosophila)
mm10_v2_chr13_-_62777089_62777089	0.154259	Pax1_Pax9	ENSMUST00000167516.2|Gm5141|ENSMUSG00000091183.2|predicted gene 5141
mm10_v2_chr10_+_77978524_77978673	0.149054	Pax1_Pax9	ENSMUST00000105397.3|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene 	ENSMUST00000105398.1|1810043G02Rik|ENSMUSG00000020284.10|RIKEN cDNA 1810043G02 gene
mm10_v2_chr5_-_31291026_31291143	0.148607	Pax1_Pax9	ENSMUST00000041565.7|Ift172|ENSMUSG00000038564.7|intraflagellar transport 172
mm10_v2_chr9_-_97111117_97111159	0.146648	Pax1_Pax9	ENSMUST00000085206.4|Slc25a36|ENSMUSG00000032449.7|solute carrier family 25, member 36
mm10_v2_chr7_-_24299310_24299368	0.0668331	Pax1_Pax9	ENSMUST00000145131.1|Zfp61|ENSMUSG00000050605.11|zinc finger protein 61
mm10_v2_chr9_+_21337828_21337859	0.0432583	Pax1_Pax9	ENSMUST00000034697.7|Slc44a2|ENSMUSG00000057193.7|solute carrier family 44, member 2
