mm10_v2_chrX_+_103422010_103422010	4.92391	Pax6	ENSMUST00000182089.1|Gm26992|ENSMUSG00000098078.1|predicted gene, 26992
mm10_v2_chr10_+_26229707_26229763	3.89073	Pax6	ENSMUST00000060716.5|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3 	ENSMUST00000164660.1|Samd3|ENSMUSG00000051354.7|sterile alpha motif domain containing 3
mm10_v2_chr11_-_95587691_95587735	3.44164	Pax6	ENSMUST00000000122.6|Ngfr|ENSMUSG00000000120.6|nerve growth factor receptor (TNFR superfamily, member 16)
mm10_v2_chr8_-_57962564_57962564	2.71755	Pax6	ENSMUST00000098757.3|Galntl6|ENSMUSG00000096914.1|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
mm10_v2_chr4_+_85205417_85205535	2.11223	Pax6	ENSMUST00000030212.8|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107189.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2 	ENSMUST00000107184.1|Sh3gl2|ENSMUSG00000028488.9|SH3-domain GRB2-like 2
mm10_v2_chr13_-_110280103_110280213	1.92016	Pax6	ENSMUST00000167824.1|Rab3c|ENSMUSG00000021700.9|RAB3C, member RAS oncogene family
mm10_v2_chr17_+_43016536_43016591	1.852	Pax6	ENSMUST00000024708.4|Tnfrsf21|ENSMUSG00000023915.4|tumor necrosis factor receptor superfamily, member 21
mm10_v2_chr6_-_60829826_60829855	1.77396	Pax6	ENSMUST00000163779.1|Snca|ENSMUSG00000025889.7|synuclein, alpha
mm10_v2_chr16_+_4968936_4968936	1.71776	Pax6	ENSMUST00000090457.5|4930451G09Rik|ENSMUSG00000022543.8|RIKEN cDNA 4930451G09 gene
mm10_v2_chr5_+_149265035_149265058	1.66661	Pax6	ENSMUST00000130144.1|Alox5ap|ENSMUSG00000060063.6|arachidonate 5-lipoxygenase activating protein 	ENSMUST00000071130.3|Alox5ap|ENSMUSG00000060063.6|arachidonate 5-lipoxygenase activating protein
mm10_v2_chr3_-_89245159_89245199	1.47547	Pax6	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr1_-_38836090_38836090	1.44884	Pax6	ENSMUST00000147695.1|Lonrf2|ENSMUSG00000048814.4|LON peptidase N-terminal domain and ring finger 2
mm10_v2_chr5_-_142906702_142906754	1.23119	Pax6	ENSMUST00000167721.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000163829.1|Actb|ENSMUSG00000029580.8|actin, beta 	ENSMUST00000100497.4|Actb|ENSMUSG00000029580.8|actin, beta
mm10_v2_chr3_-_89245005_89245031	1.19734	Pax6	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr7_-_103843154_103843169	1.18413	Pax6	ENSMUST00000063957.4|Hbb-bh1|ENSMUSG00000052217.5|hemoglobin Z, beta-like embryonic chain
mm10_v2_chr18_-_34373313_34373443	1.15327	Pax6	ENSMUST00000006027.5|Reep5|ENSMUSG00000005873.5|receptor accessory protein 5
mm10_v2_chr9_-_10904697_10904726	1.0192	Pax6	ENSMUST00000162484.1|Cntn5|ENSMUSG00000039488.9|contactin 5
mm10_v2_chr10_+_80356459_80356494	1.00703	Pax6	ENSMUST00000039836.8|Plk5|ENSMUSG00000035486.8|polo-like kinase 5 	ENSMUST00000105351.1|Plk5|ENSMUSG00000035486.8|polo-like kinase 5
mm10_v2_chr9_+_15239045_15239155	0.94153	Pax6	ENSMUST00000034413.6|Vstm5|ENSMUSG00000031937.6|V-set and transmembrane domain containing 5
mm10_v2_chr15_+_84669565_84669620	0.903772	Pax6	ENSMUST00000171460.1|Prr5|ENSMUSG00000036106.9|proline rich 5 (renal)
mm10_v2_chr11_-_67965631_67965663	0.840891	Pax6	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr2_+_163602294_163602322	0.817944	Pax6	ENSMUST00000171696.1|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like 	ENSMUST00000109408.3|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like
mm10_v2_chr9_+_50775347_50775369	0.745342	Pax6	ENSMUST00000159576.1|Alg9|ENSMUSG00000032059.7|asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)
mm10_v2_chr4_+_155491353_155491411	0.734086	Pax6	ENSMUST00000165335.1|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000105616.3|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1 	ENSMUST00000030940.7|Gnb1|ENSMUSG00000029064.9|guanine nucleotide binding protein (G protein), beta 1
mm10_v2_chr6_-_145048809_145048821	0.668899	Pax6	ENSMUST00000032402.5|Bcat1|ENSMUSG00000030268.11|branched chain aminotransferase 1, cytosolic
mm10_v2_chr5_-_18360384_18360473	0.63976	Pax6	ENSMUST00000074694.5|Gnai1|ENSMUSG00000057614.5|guanine nucleotide binding protein (G protein), alpha inhibiting 1
mm10_v2_chr2_+_163602331_163602359	0.636529	Pax6	ENSMUST00000152135.1|Ttpal|ENSMUSG00000017679.10|tocopherol (alpha) transfer protein-like
mm10_v2_chr6_-_88045190_88045270	0.600729	Pax6	ENSMUST00000113596.1|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family 	ENSMUST00000113600.3|Rab7|ENSMUSG00000079477.3|RAB7, member RAS oncogene family
mm10_v2_chr1_+_156040909_156040925	0.550279	Pax6	ENSMUST00000065648.8|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2 	ENSMUST00000097526.2|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2
mm10_v2_chr9_-_62811592_62811659	0.526479	Pax6	ENSMUST00000034775.8|Fem1b|ENSMUSG00000032244.8|feminization 1 homolog b (C. elegans)
mm10_v2_chr18_+_37447641_37447674	0.506871	Pax6	ENSMUST00000052387.3|Pcdhb14|ENSMUSG00000044043.3|protocadherin beta 14
mm10_v2_chr17_+_34604262_34604304	0.485174	Pax6	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr7_-_12775658_12775658	0.456841	Pax6	ENSMUST00000046245.5|Zscan18|ENSMUSG00000070822.4|zinc finger and SCAN domain containing 18
mm10_v2_chrX_+_23693043_23693131	0.454085	Pax6	ENSMUST00000035766.6|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44 	ENSMUST00000101670.2|Wdr44|ENSMUSG00000036769.8|WD repeat domain 44
mm10_v2_chr17_-_33718591_33718690	0.448367	Pax6	ENSMUST00000174040.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173015.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000066121.6|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000172767.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2 	ENSMUST00000173329.1|March2|ENSMUSG00000079557.4|membrane-associated ring finger (C3HC4) 2
mm10_v2_chr3_+_65109343_65109420	0.438704	Pax6	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr4_-_3835595_3835665	0.405183	Pax6	ENSMUST00000138502.1|Rps20|ENSMUSG00000028234.6|ribosomal protein S20
mm10_v2_chr8_+_31150307_31150346	0.395146	Pax6	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr8_+_105860634_105860661	0.391441	Pax6	ENSMUST00000008594.7|Nutf2|ENSMUSG00000008450.7|nuclear transport factor 2
mm10_v2_chr16_-_22857514_22857576	0.351863	Pax6	ENSMUST00000004576.6|Tbccd1|ENSMUSG00000004462.6|TBCC domain containing 1
mm10_v2_chr19_-_57118897_57118979	0.338453	Pax6	ENSMUST00000111526.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr8_+_109614417_109614517	0.336548	Pax6	ENSMUST00000109242.1|Pkd1l3|ENSMUSG00000048827.5|polycystic kidney disease 1 like 3 	ENSMUST00000057344.2|Pkd1l3|ENSMUSG00000048827.5|polycystic kidney disease 1 like 3
mm10_v2_chr11_-_6200411_6200446	0.333785	Pax6	ENSMUST00000066496.3|Nudcd3|ENSMUSG00000053838.8|NudC domain containing 3
mm10_v2_chr1_-_180813534_180813583	0.318389	Pax6	ENSMUST00000159789.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000081026.4|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr14_+_34170640_34170655	0.318376	Pax6	ENSMUST00000104925.3|Rpl23a-ps3|ENSMUSG00000078126.3|ribosomal protein L23A, pseudogene 3
mm10_v2_chr15_+_103272893_103272911	0.300634	Pax6	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr6_-_113377376_113377396	0.299058	Pax6	ENSMUST00000043333.2|Tada3|ENSMUSG00000048930.6|transcriptional adaptor 3
mm10_v2_chr11_-_104550392_104550419	0.294539	Pax6	ENSMUST00000106962.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr1_-_138619687_138619759	0.283199	Pax6	ENSMUST00000027642.2|Nek7|ENSMUSG00000026393.4|NIMA (never in mitosis gene a)-related expressed kinase 7
mm10_v2_chr13_+_66905415_66905415	0.277477	Pax6	ENSMUST00000099412.2|Gm10767|ENSMUSG00000074826.4|predicted gene 10767
mm10_v2_chr11_-_104550460_104550560	0.275606	Pax6	ENSMUST00000106961.1|Cdc27|ENSMUSG00000020687.7|cell division cycle 27 	ENSMUST00000093923.2|Cdc27|ENSMUSG00000020687.7|cell division cycle 27
mm10_v2_chr13_+_64432479_64432557	0.256522	Pax6	ENSMUST00000021939.6|Cdk20|ENSMUSG00000021483.7|cyclin-dependent kinase 20
mm10_v2_chr12_-_51829525_51829553	0.252394	Pax6	ENSMUST00000179265.1|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1 	ENSMUST00000042052.8|Hectd1|ENSMUSG00000035247.9|HECT domain containing 1
mm10_v2_chr19_+_34290653_34290668	0.251218	Pax6	ENSMUST00000025691.5|Fas|ENSMUSG00000024778.6|Fas (TNF receptor superfamily member 6) 	ENSMUST00000112472.2|Fas|ENSMUSG00000024778.6|Fas (TNF receptor superfamily member 6)
mm10_v2_chr12_+_112976471_112976563	0.248892	Pax6	ENSMUST00000165079.1|Btbd6|ENSMUSG00000002803.7|BTB (POZ) domain containing 6 	ENSMUST00000002880.6|Btbd6|ENSMUSG00000002803.7|BTB (POZ) domain containing 6
mm10_v2_chr15_-_101850778_101850792	0.247931	Pax6	ENSMUST00000023790.3|Krt1|ENSMUSG00000046834.6|keratin 1
mm10_v2_chr6_-_118780324_118780324	0.242579	Pax6	ENSMUST00000112793.3|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000075591.6|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000078320.7|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit 	ENSMUST00000112790.2|Cacna1c|ENSMUSG00000051331.8|calcium channel, voltage-dependent, L type, alpha 1C subunit
mm10_v2_chr17_-_43543639_43543639	0.233163	Pax6	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr5_+_90903864_90903899	0.223578	Pax6	ENSMUST00000075433.6|Cxcl2|ENSMUSG00000058427.7|chemokine (C-X-C motif) ligand 2
mm10_v2_chr16_+_20498817_20498866	0.220925	Pax6	ENSMUST00000003320.6|Eif2b5|ENSMUSG00000003235.6|eukaryotic translation initiation factor 2B, subunit 5 epsilon
mm10_v2_chr9_+_64179289_64179349	0.219466	Pax6	ENSMUST00000034965.6|Snapc5|ENSMUSG00000032398.6|small nuclear RNA activating complex, polypeptide 5
mm10_v2_chr4_-_139832920_139833007	0.211465	Pax6	ENSMUST00000174681.1|Pax7|ENSMUSG00000028736.7|paired box gene 7
mm10_v2_chr11_+_67966442_67966497	0.209791	Pax6	ENSMUST00000021286.4|Stx8|ENSMUSG00000020903.7|syntaxin 8 	ENSMUST00000108675.1|Stx8|ENSMUSG00000020903.7|syntaxin 8
mm10_v2_chr7_+_12897800_12897885	0.19377	Pax6	ENSMUST00000055528.4|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000117189.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000120809.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22 	ENSMUST00000119989.1|Zscan22|ENSMUSG00000054715.4|zinc finger and SCAN domain containing 22
mm10_v2_chr19_-_57118981_57119026	0.192559	Pax6	ENSMUST00000111528.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1 	ENSMUST00000111529.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1 	ENSMUST00000104902.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr6_+_123229843_123229863	0.192028	Pax6	ENSMUST00000112554.2|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n 	ENSMUST00000024118.4|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n 	ENSMUST00000117130.1|Clec4n|ENSMUSG00000023349.8|C-type lectin domain family 4, member n
mm10_v2_chr13_-_53377355_53377373	0.185802	Pax6	ENSMUST00000021920.6|Sptlc1|ENSMUSG00000021468.7|serine palmitoyltransferase, long chain base subunit 1
mm10_v2_chr13_+_73626886_73627001	0.182239	Pax6	ENSMUST00000022104.7|Tert|ENSMUSG00000021611.8|telomerase reverse transcriptase
mm10_v2_chr14_-_43819639_43819639	0.172877	Pax6	ENSMUST00000100691.3|Ear1|ENSMUSG00000072601.4|eosinophil-associated, ribonuclease A family, member 1
mm10_v2_chr16_+_34784917_34784935	0.166071	Pax6	ENSMUST00000023538.8|Mylk|ENSMUSG00000022836.10|myosin, light polypeptide kinase
mm10_v2_chr9_-_22307638_22307694	0.13562	Pax6	ENSMUST00000086278.6|Zfp810|ENSMUSG00000066829.6|zinc finger protein 810
mm10_v2_chr9_+_105642957_105643036	0.128897	Pax6	ENSMUST00000065778.6|Pik3r4|ENSMUSG00000032571.7|phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150
mm10_v2_chr8_-_80880479_80880499	0.115673	Pax6	ENSMUST00000034150.8|Gab1|ENSMUSG00000031714.8|growth factor receptor bound protein 2-associated protein 1
mm10_v2_chr13_-_66905322_66905378	0.109136	Pax6	ENSMUST00000021993.4|Uqcrb|ENSMUSG00000021520.4|ubiquinol-cytochrome c reductase binding protein
mm10_v2_chr11_-_84870712_84870807	0.101473	Pax6	ENSMUST00000170741.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000172405.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000100686.3|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2 	ENSMUST00000108081.2|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2
mm10_v2_chr17_+_25366550_25366550	0.0989525	Pax6	ENSMUST00000069616.7|Tpsb2|ENSMUSG00000033825.9|tryptase beta 2
mm10_v2_chr10_+_94550852_94550876	0.0985636	Pax6	ENSMUST00000148910.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3 	ENSMUST00000117460.1|Tmcc3|ENSMUSG00000020023.11|transmembrane and coiled coil domains 3
mm10_v2_chr1_-_180813591_180813632	0.0955418	Pax6	ENSMUST00000162118.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000159685.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A 	ENSMUST00000161308.1|H3f3a|ENSMUSG00000060743.6|H3 histone, family 3A
mm10_v2_chr6_+_48395586_48395646	0.0768851	Pax6	ENSMUST00000114571.1|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000114572.3|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1 	ENSMUST00000031815.5|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr7_+_141228766_141228813	0.0763766	Pax6	ENSMUST00000106027.2|Phrf1|ENSMUSG00000038611.10|PHD and ring finger domains 1
mm10_v2_chr11_+_60699718_60699750	0.074783	Pax6	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr11_+_45852031_45852051	0.0699404	Pax6	ENSMUST00000109261.3|Clint1|ENSMUSG00000006169.13|clathrin interactor 1 	ENSMUST00000109260.1|Clint1|ENSMUSG00000006169.13|clathrin interactor 1
mm10_v2_chr6_-_122856151_122856163	0.0678333	Pax6	ENSMUST00000042081.8|C3ar1|ENSMUSG00000040552.8|complement component 3a receptor 1
mm10_v2_chr6_+_48395652_48395688	0.0506721	Pax6	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr5_-_38480131_38480306	0.0435356	Pax6	ENSMUST00000143758.1|Slc2a9|ENSMUSG00000005107.7|solute carrier family 2 (facilitated glucose transporter), member 9 	ENSMUST00000067886.5|Slc2a9|ENSMUSG00000005107.7|solute carrier family 2 (facilitated glucose transporter), member 9
mm10_v2_chr17_+_29614800_29614844	0.0155676	Pax6	ENSMUST00000162588.1|Rnf8|ENSMUSG00000090083.4|ring finger protein 8
mm10_v2_chr15_-_35938186_35938246	0.015462	Pax6	ENSMUST00000014457.8|Cox6c|ENSMUSG00000014313.8|cytochrome c oxidase subunit VIc
mm10_v2_chr11_-_84870812_84870823	0.00750769	Pax6	ENSMUST00000168434.1|Ggnbp2|ENSMUSG00000020530.8|gametogenetin binding protein 2
