mm10_v2_chr12_+_103314944_103314962	16.5133	Smad4	ENSMUST00000179363.1|Fam181a|ENSMUSG00000096753.1|family with sequence similarity 181, member A
mm10_v2_chr2_+_70562854_70562899	11.6452	Smad4	ENSMUST00000130998.1|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr2_+_70563435_70563461	11.0168	Smad4	ENSMUST00000123330.1|Gad1|ENSMUSG00000070880.4|glutamate decarboxylase 1
mm10_v2_chr10_-_42583628_42583639	10.9553	Smad4	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr14_-_54577578_54577661	9.80057	Smad4	ENSMUST00000054487.8|Ajuba|ENSMUSG00000022178.10|ajuba LIM protein
mm10_v2_chr11_-_89302545_89302567	9.17408	Smad4	ENSMUST00000061728.3|Nog|ENSMUSG00000048616.3|noggin
mm10_v2_chr18_+_57133065_57133090	8.83241	Smad4	ENSMUST00000075770.6|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr19_-_40271506_40271616	6.39525	Smad4	ENSMUST00000068439.6|Pdlim1|ENSMUSG00000055044.6|PDZ and LIM domain 1 (elfin)
mm10_v2_chr14_+_50944499_50944514	6.29827	Smad4	ENSMUST00000178092.1|Pnp|ENSMUSG00000021871.11|purine-nucleoside phosphorylase
mm10_v2_chr17_-_70851710_70851738	5.9506	Smad4	ENSMUST00000166395.2|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr7_+_45216671_45216695	5.51141	Smad4	ENSMUST00000134420.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr15_-_103366763_103366798	5.51035	Smad4	ENSMUST00000023128.6|Itga5|ENSMUSG00000000555.6|integrin alpha 5 (fibronectin receptor alpha)
mm10_v2_chr7_-_89517576_89517587	5.51	Smad4	ENSMUST00000041761.5|Prss23|ENSMUSG00000039405.6|protease, serine, 23
mm10_v2_chr4_-_117178726_117178754	5.05028	Smad4	ENSMUST00000153953.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C 	ENSMUST00000106436.1|Kif2c|ENSMUSG00000028678.7|kinesin family member 2C
mm10_v2_chr4_-_95052170_95052181	5.04411	Smad4	ENSMUST00000058555.2|Jun|ENSMUSG00000052684.3|Jun oncogene
mm10_v2_chr13_-_21832194_21832198	4.99748	Smad4	ENSMUST00000102979.1|Hist1h4n|ENSMUSG00000069305.3|histone cluster 1, H4n
mm10_v2_chr6_+_108660772_108660874	4.8923	Smad4	ENSMUST00000163617.1|Bhlhe40|ENSMUSG00000030103.5|basic helix-loop-helix family, member e40
mm10_v2_chr13_-_102958084_102958173	4.64436	Smad4	ENSMUST00000099202.3|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4 	ENSMUST00000172264.1|Mast4|ENSMUSG00000034751.9|microtubule associated serine/threonine kinase family member 4
mm10_v2_chr6_+_15720654_15720747	4.48887	Smad4	ENSMUST00000101663.3|Mdfic|ENSMUSG00000041390.12|MyoD family inhibitor domain containing
mm10_v2_chr7_+_117380937_117380992	4.48258	Smad4	ENSMUST00000032892.5|Xylt1|ENSMUSG00000030657.5|xylosyltransferase 1
mm10_v2_chr7_+_110221697_110221708	4.14247	Smad4	ENSMUST00000033325.7|Swap70|ENSMUSG00000031015.7|SWA-70 protein
mm10_v2_chr7_+_45215753_45215852	3.9208	Smad4	ENSMUST00000033060.6|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000155313.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2 	ENSMUST00000107801.1|Tead2|ENSMUSG00000030796.9|TEA domain family member 2
mm10_v2_chr3_+_89436699_89436734	3.90574	Smad4	ENSMUST00000038942.3|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000130858.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr13_-_23551648_23551672	3.7557	Smad4	ENSMUST00000102971.1|Hist1h4f|ENSMUSG00000069274.3|histone cluster 1, H4f
mm10_v2_chr1_+_187997821_187997834	3.73954	Smad4	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr2_+_152736244_152736261	3.71846	Smad4	ENSMUST00000038368.8|Id1|ENSMUSG00000042745.9|inhibitor of DNA binding 1 	ENSMUST00000109824.1|Id1|ENSMUSG00000042745.9|inhibitor of DNA binding 1
mm10_v2_chr1_+_187997835_187997882	3.70148	Smad4	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr13_+_23581563_23581598	3.62012	Smad4	ENSMUST00000102968.1|Hist1h4d|ENSMUSG00000061482.6|histone cluster 1, H4d
mm10_v2_chrX_+_56779437_56779565	3.45679	Smad4	ENSMUST00000114773.3|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr9_-_21852603_21852644	3.34818	Smad4	ENSMUST00000034728.7|Dock6|ENSMUSG00000032198.8|dedicator of cytokinesis 6
mm10_v2_chr15_-_98728120_98728198	3.3083	Smad4	ENSMUST00000003445.6|Fkbp11|ENSMUSG00000003355.6|FK506 binding protein 11
mm10_v2_chr13_+_23531044_23531088	3.25037	Smad4	ENSMUST00000102972.3|Hist1h4h|ENSMUSG00000060981.5|histone cluster 1, H4h
mm10_v2_chr14_-_57826128_57826180	3.19278	Smad4	ENSMUST00000022536.2|Ska3|ENSMUSG00000021965.2|spindle and kinetochore associated complex subunit 3
mm10_v2_chrX_-_72274747_72274803	3.17388	Smad4	ENSMUST00000064780.3|Gabre|ENSMUSG00000031340.8|gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
mm10_v2_chr14_-_25903100_25903100	3.11894	Smad4	ENSMUST00000052286.8|Plac9a|ENSMUSG00000095304.2|placenta specific 9a
mm10_v2_chr13_-_22042949_22042978	3.03912	Smad4	ENSMUST00000091741.4|Hist1h2ag|ENSMUSG00000069301.4|histone cluster 1, H2ag
mm10_v2_chr5_+_92683625_92683648	3.02064	Smad4	ENSMUST00000168878.1|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chr4_+_117835387_117835428	2.92473	Smad4	ENSMUST00000169885.1|Slc6a9|ENSMUSG00000028542.11|solute carrier family 6 (neurotransmitter transporter, glycine), member 9
mm10_v2_chr11_-_33147400_33147448	2.88456	Smad4	ENSMUST00000020507.7|Fgf18|ENSMUSG00000057967.6|fibroblast growth factor 18
mm10_v2_chr14_-_54554359_54554370	2.88031	Smad4	ENSMUST00000022784.8|Haus4|ENSMUSG00000022177.8|HAUS augmin-like complex, subunit 4
mm10_v2_chr7_+_101394361_101394436	2.83663	Smad4	ENSMUST00000154239.1|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 	ENSMUST00000098243.2|Arap1|ENSMUSG00000032812.10|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
mm10_v2_chr3_+_89436736_89436761	2.80938	Smad4	ENSMUST00000146630.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1 	ENSMUST00000145753.1|Pbxip1|ENSMUSG00000042613.3|pre B cell leukemia transcription factor interacting protein 1
mm10_v2_chr13_+_22043189_22043214	2.77053	Smad4	ENSMUST00000110452.1|Hist1h2bj|ENSMUSG00000069300.3|histone cluster 1, H2bj
mm10_v2_chr17_+_75178797_75178824	2.76358	Smad4	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr2_+_27676440_27676454	2.71041	Smad4	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr11_-_106160101_106160168	2.65112	Smad4	ENSMUST00000045923.3|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr19_-_31664356_31664372	2.62806	Smad4	ENSMUST00000073581.5|Prkg1|ENSMUSG00000052920.8|protein kinase, cGMP-dependent, type I
mm10_v2_chr17_+_75178911_75178961	2.58261	Smad4	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr10_-_92164666_92164754	2.58229	Smad4	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr7_-_70360593_70360746	2.5685	Smad4	ENSMUST00000032768.7|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
mm10_v2_chr11_-_26591729_26591729	2.53919	Smad4	ENSMUST00000109504.1|Vrk2|ENSMUSG00000064090.8|vaccinia related kinase 2
mm10_v2_chr1_+_153652943_153653025	2.41491	Smad4	ENSMUST00000041776.5|Rgs8|ENSMUSG00000042671.6|regulator of G-protein signaling 8
mm10_v2_chr6_-_138422898_138422999	2.38648	Smad4	ENSMUST00000161450.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000163024.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3 	ENSMUST00000162185.1|Lmo3|ENSMUSG00000030226.6|LIM domain only 3
mm10_v2_chr5_+_7179299_7179365	2.3592	Smad4	ENSMUST00000179460.1|Tubb4b-ps1|ENSMUSG00000095159.1|tubulin, beta 4B class IVB, pseudogene 1
mm10_v2_chr10_+_80150448_80150482	2.27617	Smad4	ENSMUST00000153477.1|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr13_+_21735055_21735070	2.16268	Smad4	ENSMUST00000087714.4|Hist1h4j|ENSMUSG00000067455.4|histone cluster 1, H4j
mm10_v2_chr17_+_34597852_34597894	2.109	Smad4	ENSMUST00000174496.2|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000015596.3|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor 	ENSMUST00000173992.1|Ager|ENSMUSG00000015452.8|advanced glycosylation end product-specific receptor
mm10_v2_chr15_-_38300693_38300715	2.05005	Smad4	ENSMUST00000074043.5|Klf10|ENSMUSG00000037465.9|Kruppel-like factor 10
mm10_v2_chr11_-_106159902_106159927	1.91527	Smad4	ENSMUST00000064545.4|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr6_+_147032528_147032547	1.90164	Smad4	ENSMUST00000036194.4|Rep15|ENSMUSG00000040121.4|RAB15 effector protein
mm10_v2_chr9_+_106429537_106429548	1.88458	Smad4	ENSMUST00000059802.6|Rpl29|ENSMUSG00000048758.7|ribosomal protein L29
mm10_v2_chr17_+_46646225_46646272	1.87858	Smad4	ENSMUST00000002844.7|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113429.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2 	ENSMUST00000113430.1|Mrpl2|ENSMUSG00000002767.7|mitochondrial ribosomal protein L2
mm10_v2_chr9_+_96895617_96895617	1.85241	Smad4	ENSMUST00000071781.6|Gm10123|ENSMUSG00000062933.6|predicted pseudogene 10123
mm10_v2_chr10_+_91082940_91083028	1.8056	Smad4	ENSMUST00000020150.3|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chrX_+_99136119_99136138	1.76783	Smad4	ENSMUST00000052839.6|Efnb1|ENSMUSG00000031217.8|ephrin B1
mm10_v2_chr3_-_146839365_146839367	1.7545	Smad4	ENSMUST00000084614.3|Gm10288|ENSMUSG00000070343.2|predicted gene 10288
mm10_v2_chr10_+_75589363_75589390	1.72363	Smad4	ENSMUST00000072217.2|Ggt5|ENSMUSG00000006344.10|gamma-glutamyltransferase 5
mm10_v2_chr11_+_60699758_60699845	1.64916	Smad4	ENSMUST00000108719.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr6_+_54040078_54040091	1.6388	Smad4	ENSMUST00000127323.2|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr8_-_92356103_92356120	1.63504	Smad4	ENSMUST00000034183.3|4933436C20Rik|ENSMUSG00000031736.4|RIKEN cDNA 4933436C20 gene
mm10_v2_chrX_+_136270302_136270352	1.54212	Smad4	ENSMUST00000113112.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chrX_+_136270253_136270269	1.53082	Smad4	ENSMUST00000178632.1|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1 	ENSMUST00000053540.4|Ngfrap1|ENSMUSG00000046432.6|nerve growth factor receptor (TNFRSF16) associated protein 1
mm10_v2_chr14_-_104467984_104468041	1.51204	Smad4	ENSMUST00000053016.8|Pou4f1|ENSMUSG00000048349.8|POU domain, class 4, transcription factor 1
mm10_v2_chr5_+_30913398_30913403	1.50768	Smad4	ENSMUST00000031055.5|Emilin1|ENSMUSG00000029163.7|elastin microfibril interfacer 1
mm10_v2_chr7_-_45052865_45052914	1.49536	Smad4	ENSMUST00000057293.6|Prr12|ENSMUSG00000046574.7|proline rich 12
mm10_v2_chr14_+_64950037_64950056	1.48112	Smad4	ENSMUST00000043914.5|Ints9|ENSMUSG00000021975.7|integrator complex subunit 9
mm10_v2_chr11_+_60699718_60699750	1.47546	Smad4	ENSMUST00000052346.3|Llgl1|ENSMUSG00000020536.6|lethal giant larvae homolog 1 (Drosophila)
mm10_v2_chr6_+_54039935_54040039	1.43547	Smad4	ENSMUST00000114403.1|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr11_-_5261558_5261637	1.43353	Smad4	ENSMUST00000020662.8|Kremen1|ENSMUSG00000020393.10|kringle containing transmembrane protein 1
mm10_v2_chr7_+_141216626_141216700	1.42322	Smad4	ENSMUST00000141804.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7 	ENSMUST00000148975.1|Rassf7|ENSMUSG00000038618.5|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7
mm10_v2_chr11_-_106160708_106160860	1.42009	Smad4	ENSMUST00000106875.1|Limd2|ENSMUSG00000040699.7|LIM domain containing 2
mm10_v2_chr11_-_60115226_60115237	1.41664	Smad4	ENSMUST00000130746.1|4930412M03Rik|ENSMUSG00000051008.5|RIKEN cDNA 4930412M03 gene
mm10_v2_chr6_+_54039558_54039575	1.40214	Smad4	ENSMUST00000046856.7|Chn2|ENSMUSG00000004633.11|chimerin (chimaerin) 2
mm10_v2_chr4_+_130055010_130055047	1.39427	Smad4	ENSMUST00000123617.1|Col16a1|ENSMUSG00000040690.9|collagen, type XVI, alpha 1
mm10_v2_chr2_+_120476911_120476976	1.38867	Smad4	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr4_-_134245579_134245604	1.384	Smad4	ENSMUST00000030644.7|Zfp593|ENSMUSG00000028840.10|zinc finger protein 593
mm10_v2_chr9_-_20898592_20898631	1.38276	Smad4	ENSMUST00000004206.8|Eif3g|ENSMUSG00000070319.5|eukaryotic translation initiation factor 3, subunit G
mm10_v2_chr14_+_12189943_12190001	1.37825	Smad4	ENSMUST00000119888.1|Ptprg|ENSMUSG00000021745.7|protein tyrosine phosphatase, receptor type, G
mm10_v2_chr3_+_36552600_36552677	1.33251	Smad4	ENSMUST00000029269.5|Exosc9|ENSMUSG00000027714.5|exosome component 9 	ENSMUST00000136890.1|Exosc9|ENSMUSG00000027714.5|exosome component 9
mm10_v2_chr3_+_127633134_127633140	1.32852	Smad4	ENSMUST00000029587.7|Neurog2|ENSMUSG00000027967.7|neurogenin 2
mm10_v2_chr11_-_3931789_3931816	1.31965	Smad4	ENSMUST00000109992.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109988.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr11_-_115419917_115419962	1.31618	Smad4	ENSMUST00000106537.1|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000043931.2|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d 	ENSMUST00000073791.3|Atp5h|ENSMUSG00000034566.4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d
mm10_v2_chr10_+_127739516_127739592	1.22344	Smad4	ENSMUST00000054287.7|Zbtb39|ENSMUSG00000044617.7|zinc finger and BTB domain containing 39
mm10_v2_chr15_+_102977032_102977032	1.21143	Smad4	ENSMUST00000001706.6|Hoxc9|ENSMUSG00000036139.6|homeobox C9
mm10_v2_chr13_-_115090123_115090241	1.17612	Smad4	ENSMUST00000109226.3|Pelo|ENSMUSG00000042275.8|pelota homolog (Drosophila)
mm10_v2_chr4_+_128688726_128688795	1.15606	Smad4	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr11_-_3931960_3932159	1.12393	Smad4	ENSMUST00000109990.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000020710.4|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109989.3|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109991.1|Tcn2|ENSMUSG00000020432.6|transcobalamin 2 	ENSMUST00000109993.2|Tcn2|ENSMUSG00000020432.6|transcobalamin 2
mm10_v2_chr17_-_46031813_46031863	1.10693	Smad4	ENSMUST00000024747.7|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr17_+_34263209_34263256	1.06983	Smad4	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr9_+_44072196_44072211	1.04301	Smad4	ENSMUST00000176671.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr3_+_68572245_68572392	1.026	Smad4	ENSMUST00000170788.2|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr5_+_32611171_32611245	1.00334	Smad4	ENSMUST00000072311.6|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 	ENSMUST00000168707.2|Yes1|ENSMUSG00000014932.9|Yamaguchi sarcoma viral (v-yes) oncogene homolog 1
mm10_v2_chr2_+_27079371_27079385	0.976925	Smad4	ENSMUST00000091233.6|Adamtsl2|ENSMUSG00000036040.8|ADAMTS-like 2
mm10_v2_chr19_-_5295397_5295455	0.968361	Smad4	ENSMUST00000025774.9|Sf3b2|ENSMUSG00000024853.9|splicing factor 3b, subunit 2
mm10_v2_chr1_-_143702832_143702893	0.955166	Smad4	ENSMUST00000018337.7|Cdc73|ENSMUSG00000026361.7|cell division cycle 73, Paf1/RNA polymerase II complex component
mm10_v2_chr9_+_61373219_61373438	0.947945	Smad4	ENSMUST00000162583.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161993.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160882.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000160724.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000162973.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159050.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr8_+_95825353_95825354	0.936782	Smad4	ENSMUST00000074053.4|Gm10094|ENSMUSG00000061104.4|predicted gene 10094
mm10_v2_chr4_+_118621160_118621239	0.921438	Smad4	ENSMUST00000147373.1|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr3_+_96221111_96221134	0.915179	Smad4	ENSMUST00000090781.6|Hist2h2be|ENSMUSG00000068854.6|histone cluster 2, H2be
mm10_v2_chr5_+_120431770_120431905	0.902431	Smad4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr5_-_24445166_24445220	0.890996	Smad4	ENSMUST00000115043.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase 	ENSMUST00000115041.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr3_+_63295815_63295872	0.878538	Smad4	ENSMUST00000029400.1|Mme|ENSMUSG00000027820.7|membrane metallo endopeptidase
mm10_v2_chr14_-_20496780_20496901	0.848705	Smad4	ENSMUST00000022353.3|Mss51|ENSMUSG00000021815.3|MSS51 mitochondrial translational activator
mm10_v2_chr9_+_61373482_61373535	0.832397	Smad4	ENSMUST00000160541.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000161207.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl) 	ENSMUST00000159630.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr11_+_97663366_97663414	0.805045	Smad4	ENSMUST00000044730.5|Mllt6|ENSMUSG00000038437.5|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
mm10_v2_chr11_+_4637734_4637789	0.794549	Smad4	ENSMUST00000109930.2|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2 	ENSMUST00000070257.7|Ascc2|ENSMUSG00000020412.10|activating signal cointegrator 1 complex subunit 2
mm10_v2_chr1_-_45503282_45503282	0.767933	Smad4	ENSMUST00000086430.4|Col5a2|ENSMUSG00000026042.10|collagen, type V, alpha 2
mm10_v2_chr9_+_61373608_61373672	0.764585	Smad4	ENSMUST00000161689.1|Tle3|ENSMUSG00000032280.10|transducin-like enhancer of split 3, homolog of Drosophila E(spl)
mm10_v2_chr11_-_48816936_48816961	0.76093	Smad4	ENSMUST00000140800.1|Trim41|ENSMUSG00000040365.8|tripartite motif-containing 41
mm10_v2_chr3_+_102734496_102734530	0.713844	Smad4	ENSMUST00000029451.5|Tspan2|ENSMUSG00000027858.7|tetraspanin 2
mm10_v2_chr17_-_35162969_35163040	0.707029	Smad4	ENSMUST00000174805.1|Prrc2a|ENSMUSG00000024393.8|proline-rich coiled-coil 2A
mm10_v2_chr11_+_115420059_115420128	0.672947	Smad4	ENSMUST00000103035.3|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2
mm10_v2_chr5_-_24445254_24445287	0.644704	Smad4	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr14_-_31168587_31168641	0.609497	Smad4	ENSMUST00000036618.7|Stab1|ENSMUSG00000042286.7|stabilin 1
mm10_v2_chr18_-_35498856_35498925	0.586964	Smad4	ENSMUST00000025215.8|Sil1|ENSMUSG00000024357.9|endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
mm10_v2_chr10_+_33905015_33905111	0.576487	Smad4	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr12_-_109600328_109600348	0.575054	Smad4	ENSMUST00000149046.2|Rtl1|ENSMUSG00000085925.2|retrotransposon-like 1
mm10_v2_chr14_+_57826210_57826272	0.574596	Smad4	ENSMUST00000022538.3|Mrp63|ENSMUSG00000021967.3|mitochondrial ribosomal protein 63
mm10_v2_chr15_+_102102926_102102988	0.556995	Smad4	ENSMUST00000169627.1|Tenc1|ENSMUSG00000037003.9|tensin like C1 domain-containing phosphatase 	ENSMUST00000046144.9|Tenc1|ENSMUSG00000037003.9|tensin like C1 domain-containing phosphatase
mm10_v2_chr12_+_76404168_76404264	0.545494	Smad4	ENSMUST00000080449.5|Hspa2|ENSMUSG00000059970.6|heat shock protein 2
mm10_v2_chr4_+_126677630_126677646	0.536872	Smad4	ENSMUST00000030642.2|Psmb2|ENSMUSG00000028837.2|proteasome (prosome, macropain) subunit, beta type 2
mm10_v2_chr3_-_96220880_96220899	0.533047	Smad4	ENSMUST00000090782.3|Hist2h2ac|ENSMUSG00000068855.3|histone cluster 2, H2ac
mm10_v2_chr11_-_102319093_102319105	0.530202	Smad4	ENSMUST00000174302.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000178839.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000006754.7|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr9_-_57552760_57552771	0.510511	Smad4	ENSMUST00000034856.8|Mpi|ENSMUSG00000032306.8|mannose phosphate isomerase
mm10_v2_chr4_+_127172866_127172898	0.502586	Smad4	ENSMUST00000106094.2|Dlgap3|ENSMUSG00000042388.8|discs, large (Drosophila) homolog-associated protein 3
mm10_v2_chr15_-_93336800_93336852	0.471827	Smad4	ENSMUST00000080299.6|Yaf2|ENSMUSG00000022634.9|YY1 associated factor 2
mm10_v2_chr4_+_118620799_118620899	0.470859	Smad4	ENSMUST00000030501.8|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chrX_+_150588223_150588260	0.468749	Smad4	ENSMUST00000153221.1|Pfkfb1|ENSMUSG00000025271.7|6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
mm10_v2_chr17_-_25081138_25081201	0.467612	Smad4	ENSMUST00000024984.6|Tmem204|ENSMUSG00000024168.7|transmembrane protein 204
mm10_v2_chr17_-_46032366_46032383	0.454916	Smad4	ENSMUST00000071648.5|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A 	ENSMUST00000142351.2|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A 	ENSMUST00000167860.1|Vegfa|ENSMUSG00000023951.10|vascular endothelial growth factor A
mm10_v2_chr15_+_39076885_39076938	0.435516	Smad4	ENSMUST00000067072.3|Cthrc1|ENSMUSG00000054196.6|collagen triple helix repeat containing 1
mm10_v2_chr19_-_23448322_23448350	0.432548	Smad4	ENSMUST00000036069.6|Mamdc2|ENSMUSG00000033207.6|MAM domain containing 2
mm10_v2_chr15_-_98607611_98607638	0.430557	Smad4	ENSMUST00000096224.4|Adcy6|ENSMUSG00000022994.8|adenylate cyclase 6
mm10_v2_chr11_+_115420138_115420182	0.419404	Smad4	ENSMUST00000106533.1|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2 	ENSMUST00000123345.1|Kctd2|ENSMUSG00000016940.12|potassium channel tetramerisation domain containing 2
mm10_v2_chr17_-_28486082_28486149	0.413571	Smad4	ENSMUST00000079413.3|Fkbp5|ENSMUSG00000024222.10|FK506 binding protein 5
mm10_v2_chr2_+_3114220_3114225	0.412941	Smad4	ENSMUST00000072955.5|Fam171a1|ENSMUSG00000050530.8|family with sequence similarity 171, member A1
mm10_v2_chrX_+_101383726_101383741	0.405177	Smad4	ENSMUST00000119190.1|Gjb1|ENSMUSG00000047797.8|gap junction protein, beta 1
mm10_v2_chrX_-_7898950_7899000	0.370078	Smad4	ENSMUST00000115655.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1 	ENSMUST00000156741.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr11_+_4160348_4160404	0.362001	Smad4	ENSMUST00000002198.3|Sf3a1|ENSMUSG00000002129.5|splicing factor 3a, subunit 1
mm10_v2_chr15_-_96460838_96460856	0.35104	Smad4	ENSMUST00000047835.6|Scaf11|ENSMUSG00000033228.7|SR-related CTD-associated factor 11
mm10_v2_chr14_-_18331855_18331862	0.349017	Smad4	ENSMUST00000022296.6|Ube2e1|ENSMUSG00000021774.6|ubiquitin-conjugating enzyme E2E 1
mm10_v2_chr5_+_65537267_65537331	0.309533	Smad4	ENSMUST00000122141.1|Ube2k|ENSMUSG00000029203.10|ubiquitin-conjugating enzyme E2K
mm10_v2_chr7_+_83755904_83755956	0.307963	Smad4	ENSMUST00000051522.8|Gm7964|ENSMUSG00000063902.6|predicted gene 7964 	ENSMUST00000042280.7|Gm7964|ENSMUSG00000063902.6|predicted gene 7964
mm10_v2_chr18_-_52529692_52529709	0.283792	Smad4	ENSMUST00000025409.7|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr7_+_82867327_82867357	0.279648	Smad4	ENSMUST00000082237.5|Mex3b|ENSMUSG00000057706.6|mex3 homolog B (C. elegans)
mm10_v2_chr6_+_116650674_116650690	0.27313	Smad4	ENSMUST00000067354.5|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene 	ENSMUST00000178241.1|8430408G22Rik|ENSMUSG00000048489.7|RIKEN cDNA 8430408G22 gene
mm10_v2_chr9_+_13621646_13621646	0.269886	Smad4	ENSMUST00000034401.8|Maml2|ENSMUSG00000031925.10|mastermind like 2 (Drosophila)
mm10_v2_chr2_+_29869484_29869544	0.26216	Smad4	ENSMUST00000047521.6|Cercam|ENSMUSG00000039787.7|cerebral endothelial cell adhesion molecule 	ENSMUST00000134152.1|Cercam|ENSMUSG00000039787.7|cerebral endothelial cell adhesion molecule
mm10_v2_chr2_-_128967725_128967725	0.253431	Smad4	ENSMUST00000099385.2|Gm10762|ENSMUSG00000074807.2|predicted gene 10762
mm10_v2_chr5_-_92278155_92278171	0.211079	Smad4	ENSMUST00000159345.1|Naaa|ENSMUSG00000029413.8|N-acylethanolamine acid amidase 	ENSMUST00000113102.3|Naaa|ENSMUSG00000029413.8|N-acylethanolamine acid amidase
mm10_v2_chr5_-_123684289_123684379	0.206602	Smad4	ENSMUST00000111564.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1 	ENSMUST00000063905.5|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr6_-_83775767_83775826	0.194113	Smad4	ENSMUST00000014892.6|Tex261|ENSMUSG00000014748.7|testis expressed gene 261
mm10_v2_chr7_-_45870928_45870986	0.192214	Smad4	ENSMUST00000146672.1|Grin2d|ENSMUSG00000002771.10|glutamate receptor, ionotropic, NMDA2D (epsilon 4)
mm10_v2_chr19_+_4097392_4097415	0.180898	Smad4	ENSMUST00000174514.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2 	ENSMUST00000174149.1|Cdk2ap2|ENSMUSG00000024856.4|CDK2-associated protein 2
mm10_v2_chrX_-_150588071_150588153	0.136634	Smad4	ENSMUST00000140207.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112719.1|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112727.3|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000112721.3|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2 	ENSMUST00000026303.9|Apex2|ENSMUSG00000025269.10|apurinic/apyrimidinic endonuclease 2
mm10_v2_chr10_+_91083036_91083075	0.13071	Smad4	ENSMUST00000020149.5|Ikbip|ENSMUSG00000019975.5|IKBKB interacting protein
mm10_v2_chr4_+_148130883_148130915	0.111902	Smad4	ENSMUST00000084129.2|Mad2l2|ENSMUSG00000029003.5|MAD2 mitotic arrest deficient-like 2
mm10_v2_chr16_+_34784917_34784935	0.108839	Smad4	ENSMUST00000023538.8|Mylk|ENSMUSG00000022836.10|myosin, light polypeptide kinase
mm10_v2_chrX_-_7898864_7898912	0.0863228	Smad4	ENSMUST00000154552.1|Pqbp1|ENSMUSG00000031157.4|polyglutamine binding protein 1
mm10_v2_chr2_-_93046053_93046172	0.0750866	Smad4	ENSMUST00000111272.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000178666.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11 	ENSMUST00000147339.1|Prdm11|ENSMUSG00000075028.5|PR domain containing 11
mm10_v2_chr5_-_24601961_24602012	0.0717227	Smad4	ENSMUST00000030791.7|Smarcd3|ENSMUSG00000028949.7|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
mm10_v2_chr5_-_124352233_124352302	0.058306	Smad4	ENSMUST00000111472.1|Cdk2ap1|ENSMUSG00000029394.5|CDK2 (cyclin-dependent kinase 2)-associated protein 1
mm10_v2_chr15_-_27681498_27681554	0.0532023	Smad4	ENSMUST00000100739.3|Fam105a|ENSMUSG00000056069.8|family with sequence similarity 105, member A
mm10_v2_chr18_-_52529847_52529890	0.0369245	Smad4	ENSMUST00000171470.1|Lox|ENSMUSG00000024529.7|lysyl oxidase
mm10_v2_chr9_-_14381242_14381242	0.0347809	Smad4	ENSMUST00000167549.1|Endod1|ENSMUSG00000037419.8|endonuclease domain containing 1
mm10_v2_chrX_-_136741155_136741352	0.0299368	Smad4	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr5_+_121795034_121795034	0.0238747	Smad4	ENSMUST00000162327.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
