mm10_v2_chr15_-_75048837_75048837	0.585549	Sox1	ENSMUST00000179762.1|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1 	ENSMUST00000065408.9|Ly6c1|ENSMUSG00000079018.4|lymphocyte antigen 6 complex, locus C1
mm10_v2_chr7_+_119690026_119690026	0.529799	Sox1	ENSMUST00000047045.8|Acsm4|ENSMUSG00000047026.8|acyl-CoA synthetase medium-chain family member 4
mm10_v2_chr5_+_21186267_21186340	0.424254	Sox1	ENSMUST00000036031.8|Gsap|ENSMUSG00000039934.8|gamma-secretase activating protein
mm10_v2_chr17_+_34263209_34263256	0.419028	Sox1	ENSMUST00000040828.5|H2-Ab1|ENSMUSG00000073421.5|histocompatibility 2, class II antigen A, beta 1
mm10_v2_chr6_+_117841174_117841254	0.411899	Sox1	ENSMUST00000112859.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000137224.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000164472.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000112861.1|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637 	ENSMUST00000035638.8|Zfp637|ENSMUSG00000059689.8|zinc finger protein 637
mm10_v2_chr6_+_114648811_114648889	0.400046	Sox1	ENSMUST00000182510.1|Atg7|ENSMUSG00000030314.10|autophagy related 7
mm10_v2_chr17_-_47692466_47692466	0.386991	Sox1	ENSMUST00000113300.1|Prickle4|ENSMUSG00000096549.3|prickle homolog 4 (Drosophila)
mm10_v2_chrX_+_74297097_74297178	0.384395	Sox1	ENSMUST00000019231.5|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147900.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000147275.1|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1 	ENSMUST00000114171.3|Atp6ap1|ENSMUSG00000019087.7|ATPase, H+ transporting, lysosomal accessory protein 1
mm10_v2_chr15_-_74997634_74997634	0.366598	Sox1	ENSMUST00000023248.6|Ly6a|ENSMUSG00000075602.4|lymphocyte antigen 6 complex, locus A
mm10_v2_chr8_+_13159135_13159168	0.321326	Sox1	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr4_-_120747248_120747404	0.29873	Sox1	ENSMUST00000030376.7|Kcnq4|ENSMUSG00000028631.7|potassium voltage-gated channel, subfamily Q, member 4
mm10_v2_chr7_+_80343091_80343146	0.274906	Sox1	ENSMUST00000032747.5|Hddc3|ENSMUSG00000030532.5|HD domain containing 3
mm10_v2_chr17_-_34287770_34287830	0.27468	Sox1	ENSMUST00000174751.1|H2-Aa|ENSMUSG00000036594.8|histocompatibility 2, class II antigen A, alpha 	ENSMUST00000040655.6|H2-Aa|ENSMUSG00000036594.8|histocompatibility 2, class II antigen A, alpha
mm10_v2_chr7_-_57509995_57510056	0.268327	Sox1	ENSMUST00000068456.6|Gabra5|ENSMUSG00000055078.6|gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
mm10_v2_chr16_-_37654408_37654453	0.265897	Sox1	ENSMUST00000023514.3|Ndufb4|ENSMUSG00000022820.3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4
mm10_v2_chr1_-_195131536_195131588	0.222368	Sox1	ENSMUST00000075451.6|Cr1l|ENSMUSG00000016481.10|complement component (3b/4b) receptor 1-like
mm10_v2_chr5_+_21737141_21737179	0.205898	Sox1	ENSMUST00000030882.5|Pmpcb|ENSMUSG00000029017.7|peptidase (mitochondrial processing) beta
mm10_v2_chr2_-_84650714_84650749	0.201408	Sox1	ENSMUST00000111697.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111670.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111696.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111678.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111690.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111695.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111677.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111698.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000099941.2|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111676.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111694.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111675.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111689.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111687.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111692.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111685.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111686.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111688.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111693.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1 	ENSMUST00000111684.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr2_-_84650760_84650771	0.194394	Sox1	ENSMUST00000111691.1|Ctnnd1|ENSMUSG00000034101.8|catenin (cadherin associated protein), delta 1
mm10_v2_chr17_+_47737030_47737107	0.192768	Sox1	ENSMUST00000086932.3|Tfeb|ENSMUSG00000023990.12|transcription factor EB
mm10_v2_chr9_-_114390633_114390687	0.179448	Sox1	ENSMUST00000084881.4|Crtap|ENSMUSG00000032431.6|cartilage associated protein
mm10_v2_chr7_-_46919915_46919986	0.176345	Sox1	ENSMUST00000143413.1|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101 	ENSMUST00000014546.8|Tsg101|ENSMUSG00000014402.8|tumor susceptibility gene 101
mm10_v2_chr11_-_68853119_68853140	0.175913	Sox1	ENSMUST00000018880.7|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr11_-_68853019_68853101	0.16868	Sox1	ENSMUST00000108672.1|Ndel1|ENSMUSG00000018736.8|nuclear distribution gene E-like homolog 1 (A. nidulans)
mm10_v2_chr9_-_108305941_108305958	0.156218	Sox1	ENSMUST00000044725.7|Tcta|ENSMUSG00000039461.7|T cell leukemia translocation altered gene
mm10_v2_chr5_-_13121766_13121766	0.151293	Sox1	ENSMUST00000078246.4|Gm10108|ENSMUSG00000062038.4|predicted pseudogene 10108
mm10_v2_chr15_-_76918010_76918010	0.117954	Sox1	ENSMUST00000048854.7|Zfp647|ENSMUSG00000054967.6|zinc finger protein 647
mm10_v2_chr6_+_121183667_121183941	0.110961	Sox1	ENSMUST00000118234.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000088561.3|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000137432.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26 	ENSMUST00000120066.1|Pex26|ENSMUSG00000067825.5|peroxisomal biogenesis factor 26
mm10_v2_chr18_+_37496997_37496997	0.100479	Sox1	ENSMUST00000059571.5|Pcdhb19|ENSMUSG00000043313.5|protocadherin beta 19
mm10_v2_chr14_-_30923547_30923565	0.0993573	Sox1	ENSMUST00000170415.1|Itih3|ENSMUSG00000006522.9|inter-alpha trypsin inhibitor, heavy chain 3
mm10_v2_chr11_+_104282371_104282392	0.0926312	Sox1	ENSMUST00000106988.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau 	ENSMUST00000106989.1|Mapt|ENSMUSG00000018411.11|microtubule-associated protein tau
mm10_v2_chr2_-_34755229_34755252	0.0864727	Sox1	ENSMUST00000102800.1|Gapvd1|ENSMUSG00000026867.12|GTPase activating protein and VPS9 domains 1
mm10_v2_chr3_-_34005490_34005514	0.069234	Sox1	ENSMUST00000060997.2|Gm9791|ENSMUSG00000044434.2|predicted pseudogene 9791
mm10_v2_chr2_+_84798828_84798861	0.0687676	Sox1	ENSMUST00000102642.2|Ube2l6|ENSMUSG00000027078.8|ubiquitin-conjugating enzyme E2L 6 	ENSMUST00000150325.1|Ube2l6|ENSMUSG00000027078.8|ubiquitin-conjugating enzyme E2L 6
mm10_v2_chr14_-_30923754_30923765	0.0507747	Sox1	ENSMUST00000006697.8|Itih3|ENSMUSG00000006522.9|inter-alpha trypsin inhibitor, heavy chain 3
mm10_v2_chr2_+_34406845_34406880	0.0488499	Sox1	ENSMUST00000124443.1|Mapkap1|ENSMUSG00000038696.8|mitogen-activated protein kinase associated protein 1 	ENSMUST00000113124.1|Mapkap1|ENSMUSG00000038696.8|mitogen-activated protein kinase associated protein 1
mm10_v2_chr17_+_34969912_34969912	0.0306713	Sox1	ENSMUST00000173680.1|Gm20481|ENSMUSG00000092609.1|predicted gene 20481
mm10_v2_chr8_+_83165348_83165360	0.0213825	Sox1	ENSMUST00000034145.4|Tbc1d9|ENSMUSG00000031709.9|TBC1 domain family, member 9
mm10_v2_chr7_-_127890918_127890970	0.0192919	Sox1	ENSMUST00000121394.1|Prss53|ENSMUSG00000044139.11|protease, serine, 53
mm10_v2_chr5_-_140649018_140649052	0.0119307	Sox1	ENSMUST00000042661.3|Ttyh3|ENSMUSG00000036565.3|tweety homolog 3 (Drosophila)
mm10_v2_chr5_-_129670074_129670100	0.00127295	Sox1	ENSMUST00000049778.6|Zfp11|ENSMUSG00000051034.7|zinc finger protein 11
