mm10_v2_chr18_+_57142782_57142796	2.69263	Thra	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr1_+_84839833_84839875	2.27489	Thra	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr4_+_44300876_44300936	1.98811	Thra	ENSMUST00000045607.5|Melk|ENSMUSG00000035683.7|maternal embryonic leucine zipper kinase
mm10_v2_chr10_-_92162753_92162765	1.89701	Thra	ENSMUST00000182197.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr14_-_118052235_118052253	1.62177	Thra	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr13_+_94875600_94875611	1.61692	Thra	ENSMUST00000022195.10|Otp|ENSMUSG00000021685.10|orthopedia homolog (Drosophila)
mm10_v2_chr4_-_137766474_137766501	1.59188	Thra	ENSMUST00000139951.1|Alpl|ENSMUSG00000028766.4|alkaline phosphatase, liver/bone/kidney
mm10_v2_chr17_+_85620816_85620843	1.57197	Thra	ENSMUST00000175898.2|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr10_+_93641041_93641056	1.48326	Thra	ENSMUST00000020204.4|Ntn4|ENSMUSG00000020019.4|netrin 4
mm10_v2_chr12_-_111672290_111672338	1.38522	Thra	ENSMUST00000001304.7|Ckb|ENSMUSG00000001270.8|creatine kinase, brain
mm10_v2_chr7_-_141214080_141214082	1.32	Thra	ENSMUST00000026573.5|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene 	ENSMUST00000170841.1|1600016N20Rik|ENSMUSG00000025500.5|RIKEN cDNA 1600016N20 gene
mm10_v2_chr11_+_40733936_40733947	1.28105	Thra	ENSMUST00000127382.1|Nudcd2|ENSMUSG00000020328.4|NudC domain containing 2
mm10_v2_chr17_-_32388885_32389116	1.25167	Thra	ENSMUST00000087703.5|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs 	ENSMUST00000170603.1|Wiz|ENSMUSG00000024050.9|widely-interspaced zinc finger motifs
mm10_v2_chr1_-_84839304_84839321	1.22855	Thra	ENSMUST00000027421.6|Trip12|ENSMUSG00000026219.8|thyroid hormone receptor interactor 12
mm10_v2_chr12_+_112678803_112678878	1.22841	Thra	ENSMUST00000174780.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42 	ENSMUST00000169593.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42 	ENSMUST00000173942.1|Zbtb42|ENSMUSG00000037638.5|zinc finger and BTB domain containing 42
mm10_v2_chr1_+_131910458_131910539	1.19657	Thra	ENSMUST00000062264.6|Nucks1|ENSMUSG00000026434.6|nuclear casein kinase and cyclin-dependent kinase substrate 1
mm10_v2_chr6_+_113531675_113531721	1.14296	Thra	ENSMUST00000036340.5|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2 	ENSMUST00000101051.2|Fancd2|ENSMUSG00000034023.10|Fanconi anemia, complementation group D2
mm10_v2_chr13_-_99900645_99900683	1.11281	Thra	ENSMUST00000022150.6|Cartpt|ENSMUSG00000021647.6|CART prepropeptide
mm10_v2_chr5_-_74065736_74065758	1.09982	Thra	ENSMUST00000145016.1|Usp46|ENSMUSG00000054814.8|ubiquitin specific peptidase 46
mm10_v2_chr10_-_88146867_88146941	1.09331	Thra	ENSMUST00000164121.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000164803.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000168163.1|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein 	ENSMUST00000048518.9|Parpbp|ENSMUSG00000035365.9|PARP1 binding protein
mm10_v2_chr11_+_40733639_40733703	1.09117	Thra	ENSMUST00000020578.4|Nudcd2|ENSMUSG00000020328.4|NudC domain containing 2
mm10_v2_chr11_+_69965396_69965510	1.0668	Thra	ENSMUST00000018713.6|Cldn7|ENSMUSG00000018569.6|claudin 7
mm10_v2_chr6_+_120836201_120836257	1.05617	Thra	ENSMUST00000009256.2|Bcl2l13|ENSMUSG00000009112.2|BCL2-like 13 (apoptosis facilitator)
mm10_v2_chr1_+_74791516_74791516	1.03962	Thra	ENSMUST00000006718.8|Wnt10a|ENSMUSG00000026167.8|wingless related MMTV integration site 10a
mm10_v2_chr12_+_79029150_79029193	0.99961	Thra	ENSMUST00000039928.5|Plekhh1|ENSMUSG00000060716.6|pleckstrin homology domain containing, family H (with MyTH4 domain) member 1
mm10_v2_chr11_-_40733373_40733442	0.991283	Thra	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr15_-_77842133_77842175	0.990431	Thra	ENSMUST00000016771.6|Myh9|ENSMUSG00000022443.10|myosin, heavy polypeptide 9, non-muscle
mm10_v2_chr13_+_44729794_44729807	0.990216	Thra	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr10_+_80148263_80148279	0.984032	Thra	ENSMUST00000099492.3|Midn|ENSMUSG00000035621.7|midnolin 	ENSMUST00000042057.5|Midn|ENSMUSG00000035621.7|midnolin
mm10_v2_chr7_+_35802593_35802593	0.976466	Thra	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr12_+_44328882_44328954	0.966999	Thra	ENSMUST00000020939.8|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule 	ENSMUST00000110748.2|Nrcam|ENSMUSG00000020598.9|neuron-glia-CAM-related cell adhesion molecule
mm10_v2_chr1_-_163994767_163994808	0.94394	Thra	ENSMUST00000097493.3|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324 	ENSMUST00000045876.6|BC055324|ENSMUSG00000041406.8|cDNA sequence BC055324
mm10_v2_chr17_-_66449715_66449759	0.934026	Thra	ENSMUST00000086693.5|Soga2|ENSMUSG00000052105.10|SOGA family member 2 	ENSMUST00000097291.3|Soga2|ENSMUSG00000052105.10|SOGA family member 2
mm10_v2_chr4_-_135272798_135272819	0.931583	Thra	ENSMUST00000037099.8|Clic4|ENSMUSG00000037242.8|chloride intracellular channel 4 (mitochondrial)
mm10_v2_chr7_+_27258725_27258815	0.905472	Thra	ENSMUST00000079258.6|Numbl|ENSMUSG00000063160.6|numb-like
mm10_v2_chr2_+_131186942_131186971	0.885353	Thra	ENSMUST00000028804.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B 	ENSMUST00000079857.8|Cdc25b|ENSMUSG00000027330.10|cell division cycle 25B
mm10_v2_chr10_+_88147061_88147076	0.884083	Thra	ENSMUST00000169309.1|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr10_+_88146992_88147037	0.853814	Thra	ENSMUST00000052355.7|Nup37|ENSMUSG00000035351.9|nucleoporin 37
mm10_v2_chr7_+_19083842_19083941	0.836384	Thra	ENSMUST00000032568.7|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000122999.1|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000108473.3|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase 	ENSMUST00000108474.1|Dmpk|ENSMUSG00000030409.9|dystrophia myotonica-protein kinase
mm10_v2_chr14_-_118706180_118706234	0.831705	Thra	ENSMUST00000036554.6|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4 	ENSMUST00000166646.1|Abcc4|ENSMUSG00000032849.7|ATP-binding cassette, sub-family C (CFTR/MRP), member 4
mm10_v2_chr6_+_91157373_91157397	0.82187	Thra	ENSMUST00000155007.1|Hdac11|ENSMUSG00000034245.4|histone deacetylase 11
mm10_v2_chrX_-_75843185_75843198	0.805501	Thra	ENSMUST00000137192.1|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr8_+_120537423_120537445	0.797321	Thra	ENSMUST00000118136.1|Gse1|ENSMUSG00000031822.12|genetic suppressor element 1
mm10_v2_chrX_-_53269020_53269068	0.778985	Thra	ENSMUST00000114838.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr19_-_46044914_46044988	0.766154	Thra	ENSMUST00000026252.7|Ldb1|ENSMUSG00000025223.8|LIM domain binding 1
mm10_v2_chr14_+_20929416_20929451	0.762137	Thra	ENSMUST00000022369.7|Vcl|ENSMUSG00000021823.9|vinculin
mm10_v2_chr10_-_13324160_13324242	0.753236	Thra	ENSMUST00000105545.4|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr1_+_160195215_160195303	0.751339	Thra	ENSMUST00000135680.1|Mrps14|ENSMUSG00000058267.7|mitochondrial ribosomal protein S14 	ENSMUST00000097193.2|Mrps14|ENSMUSG00000058267.7|mitochondrial ribosomal protein S14
mm10_v2_chrX_-_143827391_143827414	0.750529	Thra	ENSMUST00000087316.5|Capn6|ENSMUSG00000067276.5|calpain 6
mm10_v2_chr14_+_25459267_25459297	0.7317	Thra	ENSMUST00000007961.8|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr1_-_170306332_170306332	0.709708	Thra	ENSMUST00000179801.1|Gm7694|ENSMUSG00000096603.1|predicted gene 7694
mm10_v2_chr12_+_86678685_86678796	0.702498	Thra	ENSMUST00000021681.3|Vash1|ENSMUSG00000021256.5|vasohibin 1
mm10_v2_chrX_-_102252154_102252181	0.695647	Thra	ENSMUST00000050551.3|Cited1|ENSMUSG00000051159.10|Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1
mm10_v2_chr11_-_106272927_106273006	0.689677	Thra	ENSMUST00000021052.9|Smarcd2|ENSMUSG00000078619.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
mm10_v2_chr16_-_23520579_23520673	0.68947	Thra	ENSMUST00000089883.5|Masp1|ENSMUSG00000022887.8|mannan-binding lectin serine peptidase 1
mm10_v2_chr5_-_116422858_116422873	0.678464	Thra	ENSMUST00000036991.4|Hspb8|ENSMUSG00000041548.4|heat shock protein 8
mm10_v2_chr5_+_110839973_110840022	0.672574	Thra	ENSMUST00000066160.1|Chek2|ENSMUSG00000029521.3|checkpoint kinase 2
mm10_v2_chr7_-_35802968_35803007	0.650579	Thra	ENSMUST00000061586.4|Zfp507|ENSMUSG00000044452.4|zinc finger protein 507
mm10_v2_chr4_-_129227883_129227923	0.637835	Thra	ENSMUST00000106051.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr10_-_13324250_13324318	0.631427	Thra	ENSMUST00000105543.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr12_-_98737405_98737515	0.618102	Thra	ENSMUST00000170188.1|Ptpn21|ENSMUSG00000021009.8|protein tyrosine phosphatase, non-receptor type 21
mm10_v2_chrX_-_75843063_75843139	0.602593	Thra	ENSMUST00000114057.1|Pls3|ENSMUSG00000016382.9|plastin 3 (T-isoform)
mm10_v2_chr4_+_54947976_54948054	0.584162	Thra	ENSMUST00000098070.3|Zfp462|ENSMUSG00000060206.5|zinc finger protein 462
mm10_v2_chr8_-_72443772_72443870	0.578556	Thra	ENSMUST00000019876.5|Calr3|ENSMUSG00000019732.8|calreticulin 3
mm10_v2_chr3_-_96172384_96172462	0.563798	Thra	ENSMUST00000180958.1|Gm17690|ENSMUSG00000097204.1|predicted gene, 17690
mm10_v2_chr4_+_62663620_62663664	0.562414	Thra	ENSMUST00000126338.1|Rgs3|ENSMUSG00000059810.12|regulator of G-protein signaling 3
mm10_v2_chr6_+_134035691_134035717	0.554001	Thra	ENSMUST00000081028.6|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene) 	ENSMUST00000111963.1|Etv6|ENSMUSG00000030199.10|ets variant gene 6 (TEL oncogene)
mm10_v2_chr4_-_140774196_140774236	0.551506	Thra	ENSMUST00000026381.6|Padi4|ENSMUSG00000025330.6|peptidyl arginine deiminase, type IV
mm10_v2_chr19_+_8764934_8765034	0.542861	Thra	ENSMUST00000184663.1|Nxf1|ENSMUSG00000010097.7|nuclear RNA export factor 1
mm10_v2_chr13_+_44729535_44729697	0.539281	Thra	ENSMUST00000174068.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr5_+_53590215_53590351	0.529431	Thra	ENSMUST00000037618.6|Rbpj|ENSMUSG00000039191.6|recombination signal binding protein for immunoglobulin kappa J region
mm10_v2_chr5_-_134946917_134946945	0.495506	Thra	ENSMUST00000051401.2|Cldn4|ENSMUSG00000047501.2|claudin 4
mm10_v2_chr8_-_105707933_105707933	0.495399	Thra	ENSMUST00000013299.9|Enkd1|ENSMUSG00000013155.9|enkurin domain containing 1
mm10_v2_chr14_+_25459206_25459225	0.483037	Thra	ENSMUST00000162645.1|Zmiz1|ENSMUSG00000007817.8|zinc finger, MIZ-type containing 1
mm10_v2_chr14_-_55758458_55758489	0.478225	Thra	ENSMUST00000001497.7|Cideb|ENSMUSG00000022219.9|cell death-inducing DNA fragmentation factor, alpha subunit-like effector B
mm10_v2_chr3_-_52104891_52104922	0.445375	Thra	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr2_+_145785980_145786152	0.444145	Thra	ENSMUST00000110005.1|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2 	ENSMUST00000094480.4|Rin2|ENSMUSG00000001768.9|Ras and Rab interactor 2
mm10_v2_chr16_+_32431225_32431280	0.440954	Thra	ENSMUST00000115140.1|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr6_+_83137089_83137121	0.438656	Thra	ENSMUST00000121093.1|Rtkn|ENSMUSG00000034930.9|rhotekin 	ENSMUST00000087938.4|Rtkn|ENSMUSG00000034930.9|rhotekin
mm10_v2_chr15_-_98165560_98165598	0.438612	Thra	ENSMUST00000123922.1|Asb8|ENSMUSG00000048175.7|ankyrin repeat and SOCS box-containing 8
mm10_v2_chr3_+_96172327_96172338	0.437122	Thra	ENSMUST00000076372.4|Sf3b4|ENSMUSG00000068856.3|splicing factor 3b, subunit 4
mm10_v2_chr12_+_78861693_78861819	0.430661	Thra	ENSMUST00000071230.7|Eif2s1|ENSMUSG00000021116.9|eukaryotic translation initiation factor 2, subunit 1 alpha
mm10_v2_chr7_+_3290553_3290586	0.423924	Thra	ENSMUST00000096744.5|Myadm|ENSMUSG00000068566.6|myeloid-associated differentiation marker
mm10_v2_chr16_+_31663841_31663912	0.412116	Thra	ENSMUST00000115201.1|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr2_+_129592818_129592885	0.4034	Thra	ENSMUST00000153491.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha 	ENSMUST00000161620.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha 	ENSMUST00000179001.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha
mm10_v2_chr5_+_119834663_119834663	0.397336	Thra	ENSMUST00000018407.6|Tbx5|ENSMUSG00000018263.8|T-box 5
mm10_v2_chr14_-_101640434_101640477	0.390244	Thra	ENSMUST00000168587.1|Commd6|ENSMUSG00000075486.3|COMM domain containing 6
mm10_v2_chr14_-_20730327_20730327	0.390033	Thra	ENSMUST00000047490.5|Ndst2|ENSMUSG00000039308.5|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2
mm10_v2_chr5_+_121795034_121795034	0.387658	Thra	ENSMUST00000162327.1|Atxn2|ENSMUSG00000042605.9|ataxin 2
mm10_v2_chr17_-_74294834_74294883	0.381669	Thra	ENSMUST00000078459.6|Memo1|ENSMUSG00000058704.7|mediator of cell motility 1
mm10_v2_chr15_-_98165613_98165625	0.381366	Thra	ENSMUST00000143400.1|Asb8|ENSMUSG00000048175.7|ankyrin repeat and SOCS box-containing 8
mm10_v2_chr7_+_102229999_102230046	0.369807	Thra	ENSMUST00000120119.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr4_-_20778527_20778593	0.365832	Thra	ENSMUST00000119374.1|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr2_+_112265809_112265858	0.357401	Thra	ENSMUST00000110991.2|Slc12a6|ENSMUSG00000027130.9|solute carrier family 12, member 6
mm10_v2_chr10_+_94198955_94199043	0.35278	Thra	ENSMUST00000020209.9|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 	ENSMUST00000179990.1|Ndufa12|ENSMUSG00000020022.10|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12
mm10_v2_chr14_+_79481164_79481194	0.345846	Thra	ENSMUST00000040131.5|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr11_+_79660532_79660562	0.335705	Thra	ENSMUST00000155381.1|Rab11fip4|ENSMUSG00000017639.7|RAB11 family interacting protein 4 (class II)
mm10_v2_chr2_-_80128834_80128996	0.324871	Thra	ENSMUST00000102654.4|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent 	ENSMUST00000102655.3|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr4_-_126202583_126202698	0.324183	Thra	ENSMUST00000106142.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000169403.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3 	ENSMUST00000130334.1|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr7_-_102250086_102250123	0.318913	Thra	ENSMUST00000106923.1|Rhog|ENSMUSG00000073982.4|ras homolog gene family, member G 	ENSMUST00000098230.4|Rhog|ENSMUSG00000073982.4|ras homolog gene family, member G
mm10_v2_chr2_+_157279026_157279064	0.31612	Thra	ENSMUST00000116380.2|Rpn2|ENSMUSG00000027642.9|ribophorin II
mm10_v2_chr2_-_80129458_80129549	0.31377	Thra	ENSMUST00000102653.1|Pde1a|ENSMUSG00000059173.13|phosphodiesterase 1A, calmodulin-dependent
mm10_v2_chr6_-_86526164_86526187	0.312704	Thra	ENSMUST00000053015.5|Pcbp1|ENSMUSG00000051695.5|poly(rC) binding protein 1
mm10_v2_chr10_+_126978690_126978749	0.305189	Thra	ENSMUST00000105256.2|Ctdsp2|ENSMUSG00000078429.2|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
mm10_v2_chr12_-_113260217_113260236	0.304277	Thra	ENSMUST00000178282.1|Igha|ENSMUSG00000095079.1|immunoglobulin heavy constant alpha
mm10_v2_chr2_+_157279065_157279146	0.295752	Thra	ENSMUST00000029171.5|Rpn2|ENSMUSG00000027642.9|ribophorin II
mm10_v2_chr17_+_34644764_34644797	0.29521	Thra	ENSMUST00000036720.8|Fkbpl|ENSMUSG00000033739.8|FK506 binding protein-like
mm10_v2_chr3_+_122729158_122729182	0.294637	Thra	ENSMUST00000066728.5|Pde5a|ENSMUSG00000053965.6|phosphodiesterase 5A, cGMP-specific
mm10_v2_chr16_+_32431020_32431034	0.294414	Thra	ENSMUST00000104893.2|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr3_-_105960099_105960099	0.288793	Thra	ENSMUST00000118209.1|Atp5f1|ENSMUSG00000000563.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm10_v2_chr1_-_12991109_12991177	0.286499	Thra	ENSMUST00000115403.2|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1 	ENSMUST00000115402.1|Slco5a1|ENSMUSG00000025938.10|solute carrier organic anion transporter family, member 5A1
mm10_v2_chr6_-_71823805_71823814	0.284359	Thra	ENSMUST00000065103.2|Mrpl35|ENSMUSG00000052962.2|mitochondrial ribosomal protein L35
mm10_v2_chr6_-_128437653_128437730	0.280071	Thra	ENSMUST00000151796.1|Fkbp4|ENSMUSG00000030357.4|FK506 binding protein 4
mm10_v2_chr16_+_32430895_32430978	0.272647	Thra	ENSMUST00000115137.1|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform 	ENSMUST00000079791.4|Pcyt1a|ENSMUSG00000005615.8|phosphate cytidylyltransferase 1, choline, alpha isoform
mm10_v2_chr9_+_44240668_44240693	0.270117	Thra	ENSMUST00000092426.3|Ccdc153|ENSMUSG00000070306.2|coiled-coil domain containing 153
mm10_v2_chr12_-_111712946_111712958	0.269005	Thra	ENSMUST00000160825.1|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5 	ENSMUST00000162953.1|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr7_-_126475082_126475130	0.266073	Thra	ENSMUST00000032978.6|Sh2b1|ENSMUSG00000030733.9|SH2B adaptor protein 1
mm10_v2_chr3_+_38886940_38886940	0.25292	Thra	ENSMUST00000061260.7|Fat4|ENSMUSG00000046743.6|FAT tumor suppressor homolog 4 (Drosophila)
mm10_v2_chr14_-_101640670_101640700	0.249374	Thra	ENSMUST00000100339.2|Commd6|ENSMUSG00000075486.3|COMM domain containing 6
mm10_v2_chr2_+_155382186_155382274	0.24752	Thra	ENSMUST00000134218.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr8_-_54529951_54530007	0.247122	Thra	ENSMUST00000067476.8|Spcs3|ENSMUSG00000054408.9|signal peptidase complex subunit 3 homolog (S. cerevisiae)
mm10_v2_chr9_+_57521232_57521314	0.246438	Thra	ENSMUST00000000090.6|Cox5a|ENSMUSG00000000088.6|cytochrome c oxidase subunit Va
mm10_v2_chr1_+_131827977_131828019	0.244696	Thra	ENSMUST00000086559.6|Slc41a1|ENSMUSG00000013275.9|solute carrier family 41, member 1
mm10_v2_chr12_+_84451485_84451518	0.244688	Thra	ENSMUST00000137170.1|Lin52|ENSMUSG00000085793.1|lin-52 homolog (C. elegans)
mm10_v2_chr7_-_122101735_122101886	0.244455	Thra	ENSMUST00000139456.1|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000106471.2|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000123296.1|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 	ENSMUST00000033157.3|Ndufab1|ENSMUSG00000030869.5|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1
mm10_v2_chr2_+_129592914_129592940	0.244205	Thra	ENSMUST00000103203.1|Sirpa|ENSMUSG00000037902.12|signal-regulatory protein alpha
mm10_v2_chr14_-_16243309_16243344	0.239537	Thra	ENSMUST00000112625.1|Oxsm|ENSMUSG00000021786.6|3-oxoacyl-ACP synthase, mitochondrial
mm10_v2_chr4_-_156255327_156255344	0.231648	Thra	ENSMUST00000179919.1|Samd11|ENSMUSG00000096351.1|sterile alpha motif domain containing 11
mm10_v2_chr15_+_99702278_99702312	0.22906	Thra	ENSMUST00000023759.4|Smarcd1|ENSMUSG00000023018.4|SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
mm10_v2_chr15_+_76343504_76343558	0.225266	Thra	ENSMUST00000023210.6|Cyc1|ENSMUSG00000022551.7|cytochrome c-1
mm10_v2_chr7_+_28440927_28440945	0.220663	Thra	ENSMUST00000078845.6|Gmfg|ENSMUSG00000060791.9|glia maturation factor, gamma
mm10_v2_chr2_+_32450444_32450462	0.214031	Thra	ENSMUST00000048431.2|Naif1|ENSMUSG00000039164.2|nuclear apoptosis inducing factor 1
mm10_v2_chr4_-_58912678_58912776	0.20898	Thra	ENSMUST00000144512.1|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000102889.3|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180 	ENSMUST00000055822.8|AI314180|ENSMUSG00000050812.12|expressed sequence AI314180
mm10_v2_chr11_-_29547820_29547870	0.206656	Thra	ENSMUST00000102844.3|Rps27a|ENSMUSG00000020460.9|ribosomal protein S27A
mm10_v2_chr8_-_91801547_91801560	0.204768	Thra	ENSMUST00000093312.4|Irx3|ENSMUSG00000031734.11|Iroquois related homeobox 3 (Drosophila)
mm10_v2_chr19_+_11770415_11770440	0.202673	Thra	ENSMUST00000167199.1|Mrpl16|ENSMUSG00000024683.5|mitochondrial ribosomal protein L16
mm10_v2_chr7_+_126976338_126976400	0.200552	Thra	ENSMUST00000032920.3|Cdipt|ENSMUSG00000030682.3|CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)
mm10_v2_chr1_+_156035705_156035772	0.19812	Thra	ENSMUST00000111754.2|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2 	ENSMUST00000133152.1|Tor1aip2|ENSMUSG00000050565.10|torsin A interacting protein 2
mm10_v2_chr11_+_97315716_97315908	0.194617	Thra	ENSMUST00000019026.3|Mrpl45|ENSMUSG00000018882.6|mitochondrial ribosomal protein L45 	ENSMUST00000132168.1|Mrpl45|ENSMUSG00000018882.6|mitochondrial ribosomal protein L45
mm10_v2_chr12_-_111713185_111713257	0.190164	Thra	ENSMUST00000054636.6|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr17_-_46487641_46487682	0.188277	Thra	ENSMUST00000047034.8|Ttbk1|ENSMUSG00000015599.8|tau tubulin kinase 1
mm10_v2_chr16_-_31275277_31275290	0.181518	Thra	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr16_+_91485295_91485336	0.180326	Thra	ENSMUST00000129878.1|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1
mm10_v2_chr12_+_82170016_82170173	0.178058	Thra	ENSMUST00000166429.1|Sipa1l1|ENSMUSG00000042700.9|signal-induced proliferation-associated 1 like 1
mm10_v2_chr2_-_76647992_76648043	0.174185	Thra	ENSMUST00000002808.6|Prkra|ENSMUSG00000002731.6|protein kinase, interferon inducible double stranded RNA dependent activator
mm10_v2_chr5_+_72914554_72914625	0.172972	Thra	ENSMUST00000143829.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr5_+_32863700_32863777	0.171565	Thra	ENSMUST00000149350.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000118698.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000150130.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000087897.4|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000119705.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000125574.1|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5 	ENSMUST00000049780.6|Depdc5|ENSMUSG00000037426.11|DEP domain containing 5
mm10_v2_chr16_-_76403673_76403717	0.171002	Thra	ENSMUST00000052867.7|Gm9843|ENSMUSG00000050299.7|predicted gene 9843
mm10_v2_chr2_-_25621923_25622031	0.167964	Thra	ENSMUST00000028308.4|Tmem141|ENSMUSG00000026939.6|transmembrane protein 141 	ENSMUST00000142087.1|Tmem141|ENSMUSG00000026939.6|transmembrane protein 141
mm10_v2_chr1_+_163994866_163994904	0.167599	Thra	ENSMUST00000111490.1|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18 	ENSMUST00000045694.7|Mettl18|ENSMUSG00000041396.7|methyltransferase like 18
mm10_v2_chr10_-_93081596_93081644	0.16751	Thra	ENSMUST00000168617.1|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene 	ENSMUST00000168110.1|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene 	ENSMUST00000020200.7|Gm872|ENSMUSG00000020014.9|RIKEN cDNA 4930485B16 gene
mm10_v2_chr4_+_118409331_118409401	0.163437	Thra	ENSMUST00000084319.4|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000106384.3|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000126089.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000073881.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000019229.8|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000144577.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm10_v2_chr16_-_34095983_34096060	0.162188	Thra	ENSMUST00000114973.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase 	ENSMUST00000114964.1|Kalrn|ENSMUSG00000061751.9|kalirin, RhoGEF kinase
mm10_v2_chr14_+_21500879_21500897	0.161034	Thra	ENSMUST00000182964.1|Kat6b|ENSMUSG00000021767.10|K(lysine) acetyltransferase 6B
mm10_v2_chr18_+_42275353_42275392	0.158725	Thra	ENSMUST00000046972.7|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27 	ENSMUST00000091920.5|Rbm27|ENSMUSG00000024491.9|RNA binding motif protein 27
mm10_v2_chr2_+_26389334_26389364	0.155969	Thra	ENSMUST00000076431.6|Pmpca|ENSMUSG00000026926.8|peptidase (mitochondrial processing) alpha 	ENSMUST00000114093.1|Pmpca|ENSMUSG00000026926.8|peptidase (mitochondrial processing) alpha
mm10_v2_chr9_+_107576915_107576990	0.151585	Thra	ENSMUST00000112387.2|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000123005.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000010195.7|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1 	ENSMUST00000144392.1|Hyal1|ENSMUSG00000010051.9|hyaluronoglucosaminidase 1
mm10_v2_chr3_+_86224665_86224717	0.14932	Thra	ENSMUST00000107635.1|Lrba|ENSMUSG00000028080.10|LPS-responsive beige-like anchor
mm10_v2_chr7_-_100514800_100514960	0.145487	Thra	ENSMUST00000054923.7|Dnajb13|ENSMUSG00000030708.7|DnaJ (Hsp40) related, subfamily B, member 13
mm10_v2_chr4_+_127243784_127243856	0.137208	Thra	ENSMUST00000142029.1|Smim12|ENSMUSG00000042380.8|small integral membrane protein 12
mm10_v2_chr2_-_73911323_73911328	0.134295	Thra	ENSMUST00000111996.1|Atp5g3|ENSMUSG00000018770.3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) 	ENSMUST00000018914.2|Atp5g3|ENSMUSG00000018770.3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)
mm10_v2_chr9_+_121950988_121951044	0.133915	Thra	ENSMUST00000043011.7|Fam198a|ENSMUSG00000038233.8|family with sequence similarity 198, member A
mm10_v2_chr4_-_126202757_126202762	0.133038	Thra	ENSMUST00000080919.5|Thrap3|ENSMUSG00000043962.10|thyroid hormone receptor associated protein 3
mm10_v2_chr8_+_3676299_3676299	0.131553	Thra	ENSMUST00000044857.3|Trappc5|ENSMUSG00000040236.3|trafficking protein particle complex 5
mm10_v2_chr12_-_111712909_111712932	0.131545	Thra	ENSMUST00000160576.1|Bag5|ENSMUSG00000049792.6|BCL2-associated athanogene 5
mm10_v2_chr14_-_70207637_70207675	0.126826	Thra	ENSMUST00000022682.5|Sorbs3|ENSMUSG00000022091.5|sorbin and SH3 domain containing 3
mm10_v2_chrX_-_7967817_7967910	0.124083	Thra	ENSMUST00000033502.7|Gata1|ENSMUSG00000031162.8|GATA binding protein 1
mm10_v2_chr15_-_78529617_78529636	0.123016	Thra	ENSMUST00000023075.8|C1qtnf6|ENSMUSG00000022440.8|C1q and tumor necrosis factor related protein 6
mm10_v2_chr5_+_72914264_72914304	0.112028	Thra	ENSMUST00000144843.1|Slain2|ENSMUSG00000036087.12|SLAIN motif family, member 2
mm10_v2_chr17_+_74717743_74717773	0.110004	Thra	ENSMUST00000024882.6|Ttc27|ENSMUSG00000024078.6|tetratricopeptide repeat domain 27
mm10_v2_chr3_+_108284089_108284100	0.102738	Thra	ENSMUST00000102632.4|Sort1|ENSMUSG00000068747.8|sortilin 1
mm10_v2_chrX_+_169685191_169685250	0.097849	Thra	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr16_+_31663935_31664039	0.0873023	Thra	ENSMUST00000100001.3|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila) 	ENSMUST00000064477.7|Dlg1|ENSMUSG00000022770.10|discs, large homolog 1 (Drosophila)
mm10_v2_chr11_+_82115180_82115186	0.0851689	Thra	ENSMUST00000009329.2|Ccl8|ENSMUSG00000009185.2|chemokine (C-C motif) ligand 8
mm10_v2_chr15_+_101412402_101412433	0.0844563	Thra	ENSMUST00000068904.8|Krt7|ENSMUSG00000023039.10|keratin 7
mm10_v2_chr12_+_102469123_102469156	0.081809	Thra	ENSMUST00000179218.1|Golga5|ENSMUSG00000021192.9|golgi autoantigen, golgin subfamily a, 5
mm10_v2_chr5_-_24445166_24445220	0.0817115	Thra	ENSMUST00000115043.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase 	ENSMUST00000115041.1|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chr7_-_141434532_141434605	0.074816	Thra	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr3_+_32736990_32737127	0.0730856	Thra	ENSMUST00000127477.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 	ENSMUST00000121778.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 	ENSMUST00000154257.1|Ndufb5|ENSMUSG00000027673.6|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5
mm10_v2_chr2_-_119477613_119477705	0.0693978	Thra	ENSMUST00000110808.1|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae) 	ENSMUST00000049920.7|Ino80|ENSMUSG00000034154.9|INO80 homolog (S. cerevisiae)
mm10_v2_chr5_-_72868431_72868459	0.0651102	Thra	ENSMUST00000073843.6|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase 	ENSMUST00000071944.6|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase 	ENSMUST00000113594.1|Tec|ENSMUSG00000029217.10|tec protein tyrosine kinase
mm10_v2_chr17_+_28177339_28177449	0.0626488	Thra	ENSMUST00000073534.2|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523 	ENSMUST00000002318.1|Zfp523|ENSMUSG00000024220.7|zinc finger protein 523
mm10_v2_chr15_+_78430086_78430127	0.0617585	Thra	ENSMUST00000162808.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr4_-_20778852_20778876	0.0595529	Thra	ENSMUST00000102998.3|Nkain3|ENSMUSG00000055761.8|Na+/K+ transporting ATPase interacting 3
mm10_v2_chr9_+_107906866_107906918	0.0589768	Thra	ENSMUST00000035203.7|Mst1r|ENSMUSG00000032584.7|macrophage stimulating 1 receptor (c-met-related tyrosine kinase)
mm10_v2_chr7_+_19228334_19228416	0.0588738	Thra	ENSMUST00000063976.8|Opa3|ENSMUSG00000052214.8|optic atrophy 3
mm10_v2_chr9_-_21963568_21963592	0.0584466	Thra	ENSMUST00000006397.5|Epor|ENSMUSG00000006235.5|erythropoietin receptor
mm10_v2_chr5_-_24445254_24445287	0.0543917	Thra	ENSMUST00000030800.6|Fastk|ENSMUSG00000028959.8|Fas-activated serine/threonine kinase
mm10_v2_chrX_+_73716712_73716750	0.0537888	Thra	ENSMUST00000114461.2|Abcd1|ENSMUSG00000031378.8|ATP-binding cassette, sub-family D (ALD), member 1
mm10_v2_chr2_+_155381808_155381884	0.0525756	Thra	ENSMUST00000043237.7|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2 	ENSMUST00000174685.1|Trp53inp2|ENSMUSG00000038375.9|transformation related protein 53 inducible nuclear protein 2
mm10_v2_chr3_-_94786430_94786466	0.0415768	Thra	ENSMUST00000107272.1|Cgn|ENSMUSG00000068876.8|cingulin
mm10_v2_chr15_-_35938009_35938178	0.0410449	Thra	ENSMUST00000156915.1|Cox6c|ENSMUSG00000014313.8|cytochrome c oxidase subunit VIc
mm10_v2_chr7_-_86775860_86775872	0.0405091	Thra	ENSMUST00000001824.5|Folh1|ENSMUSG00000001773.7|folate hydrolase 1
mm10_v2_chr2_+_173659834_173659871	0.0368819	Thra	ENSMUST00000109110.3|Rab22a|ENSMUSG00000027519.4|RAB22A, member RAS oncogene family
mm10_v2_chr16_+_91485233_91485294	0.0362893	Thra	ENSMUST00000023689.4|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1 	ENSMUST00000117748.1|Ifnar1|ENSMUSG00000022967.6|interferon (alpha and beta) receptor 1
mm10_v2_chr4_+_131873608_131873679	0.0277773	Thra	ENSMUST00000053819.3|Srsf4|ENSMUSG00000028911.10|serine/arginine-rich splicing factor 4
mm10_v2_chr4_+_33310306_33310387	0.0245281	Thra	ENSMUST00000108153.2|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase 	ENSMUST00000029942.7|Rngtt|ENSMUSG00000028274.11|RNA guanylyltransferase and 5'-phosphatase
mm10_v2_chr4_-_19708922_19709004	0.0224659	Thra	ENSMUST00000108246.2|Wwp1|ENSMUSG00000041058.9|WW domain containing E3 ubiquitin protein ligase 1
mm10_v2_chr3_-_94786469_94786492	0.0199873	Thra	ENSMUST00000107273.1|Cgn|ENSMUSG00000068876.8|cingulin
mm10_v2_chrX_+_86191764_86191782	0.0140301	Thra	ENSMUST00000026036.4|Nr0b1|ENSMUSG00000025056.4|nuclear receptor subfamily 0, group B, member 1
mm10_v2_chr11_+_4986824_4986894	0.00867291	Thra	ENSMUST00000009234.9|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit 	ENSMUST00000109897.1|Ap1b1|ENSMUSG00000009090.11|adaptor protein complex AP-1, beta 1 subunit
mm10_v2_chr8_-_67910911_67910935	0.00619404	Thra	ENSMUST00000093468.5|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr14_-_79481268_79481449	0.00300366	Thra	ENSMUST00000022601.5|Wbp4|ENSMUSG00000022023.5|WW domain binding protein 4
mm10_v2_chr7_+_83584910_83585092	0.00110428	Thra	ENSMUST00000039317.7|Tmc3|ENSMUSG00000038540.8|transmembrane channel-like gene family 3 	ENSMUST00000164944.1|Tmc3|ENSMUSG00000038540.8|transmembrane channel-like gene family 3
