ISMARA results: Msx3

Motif ID: Msx3

Z-value: 0.406

Transcription factors associated with Msx3:

Gene Symbol	Entrez ID	Gene Name
Msx3	ENSMUSG00000025469.9	Msx3

Activity-expression correlation:

Gene Symbol	Promoter	Pearson corr. coef.	P-value	Plot
Msx3	mm10_v2_chr7_-_140049140_140049180	0.01	9.1e-01	Click!

View svg image
View png image

Top targets:

Search:

Show entries

Showing 1 to 20 of 63 entries

Promoter	Score	Refseq	Gene Symbol	Gene Name
chr4_-_14621805	3.350	ENSMUST00000042221.7	Slc26a7	solute carrier family 26, member 7
chr9_-_53975246	3.205	ENSMUST00000048409.7	Elmod1	ELMO/CED-12 domain containing 1
chr10_+_81257277	2.301	ENSMUST00000117488.1 ENSMUST00000105328.3 ENSMUST00000121205.1	Matk	megakaryocyte-associated tyrosine kinase
chr15_+_44787746	2.292	ENSMUST00000181839.1	2310069G16Rik	RIKEN cDNA 2310069G16 gene
chr4_+_102254739	2.168	ENSMUST00000106907.2	Pde4b	phosphodiesterase 4B, cAMP specific
chr2_-_33087169	2.075	ENSMUST00000102810.3	Garnl3	GTPase activating RANGAP domain-like 3
chr10_+_39612934	2.018	ENSMUST00000019987.6	Traf3ip2	TRAF3 interacting protein 2
chr2_-_45117349	1.978	ENSMUST00000176438.2	Zeb2	zinc finger E-box binding homeobox 2
chr4_-_14621494	1.870	ENSMUST00000149633.1	Slc26a7	solute carrier family 26, member 7
chr2_+_125136692	1.820	ENSMUST00000099452.2	Ctxn2	cortexin 2
chr2_-_33086366	1.804	ENSMUST00000049618.2	Garnl3	GTPase activating RANGAP domain-like 3
chr4_-_14621669	1.686	ENSMUST00000143105.1	Slc26a7	solute carrier family 26, member 7
chr1_-_158356258	1.516	ENSMUST00000004133.8	Brinp2	bone morphogenic protein/retinoic acid inducible neural-specific 2
chr15_+_82252397	1.443	ENSMUST00000136948.1	1500009C09Rik	RIKEN cDNA 1500009C09 gene
chr7_-_127895578	1.364	ENSMUST00000033074.6	Vkorc1	vitamin K epoxide reductase complex, subunit 1
chr10_+_88379217	1.355	ENSMUST00000130301.1 ENSMUST00000020251.8	Gnptab	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chrX_-_143933089	1.304	ENSMUST00000087313.3	Dcx	doublecortin
chr5_+_14514918	1.272	ENSMUST00000030691.10 ENSMUST00000182407.1	Pclo	piccolo (presynaptic cytomatrix protein)
chr10_+_88379127	1.239	ENSMUST00000127615.1	Gnptab	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr13_+_83732438	1.126	ENSMUST00000182701.1	C130071C03Rik	RIKEN cDNA C130071C03 gene

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Search:

Show entries

Showing 1 to 20 of 28 entries

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	6.9	GO:0019532	oxalate transport(GO:0019532)
0.0	3.2	GO:1903955	positive regulation of protein targeting to mitochondrion(GO:1903955)
0.9	2.6	GO:0016256	N-glycan processing to lysosome(GO:0016256)
0.2	2.3	GO:0048672	positive regulation of collateral sprouting(GO:0048672)
0.0	2.3	GO:0038083	peptidyl-tyrosine autophosphorylation(GO:0038083)
0.2	2.2	GO:1901898	negative regulation of relaxation of cardiac muscle(GO:1901898)
0.3	2.0	GO:1903056	positive regulation of lens fiber cell differentiation(GO:1902748) regulation of melanosome organization(GO:1903056)
0.1	2.0	GO:0002230	positive regulation of defense response to virus by host(GO:0002230)
0.1	1.6	GO:0000185	activation of MAPKKK activity(GO:0000185)
0.0	1.5	GO:0071300	cellular response to retinoic acid(GO:0071300)
0.5	1.4	GO:0018214	peptidyl-glutamic acid carboxylation(GO:0017187) protein carboxylation(GO:0018214)
0.4	1.3	GO:0098928	presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.0	1.0	GO:0046677	response to antibiotic(GO:0046677)
0.3	0.9	GO:0015712	hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760)
0.1	0.9	GO:0099628	receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0	0.9	GO:0046827	positive regulation of protein export from nucleus(GO:0046827)
0.0	0.9	GO:0001829	trophectodermal cell differentiation(GO:0001829)
0.3	0.8	GO:0048014	Tie signaling pathway(GO:0048014)
0.2	0.8	GO:0006543	glutamine catabolic process(GO:0006543)
0.0	0.8	GO:0051382	kinetochore assembly(GO:0051382)

Gene overrepresentation in cellular_component category:

Search:

Show entries

Showing 1 to 11 of 11 entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.9	GO:0016323	basolateral plasma membrane(GO:0016323)
0.0	2.3	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.1	2.2	GO:0000930	gamma-tubulin complex(GO:0000930)
0.3	1.3	GO:0099569	presynaptic cytoskeleton(GO:0099569)
0.1	0.9	GO:0030015	CCR4-NOT core complex(GO:0030015)
0.0	0.9	GO:0044224	juxtaparanode region of axon(GO:0044224)
0.1	0.7	GO:0071437	invadopodium(GO:0071437)
0.0	0.7	GO:0016010	dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.1	0.6	GO:0090543	ESCRT III complex(GO:0000815) Flemming body(GO:0090543)
0.1	0.3	GO:0042719	mitochondrial intermembrane space protein transporter complex(GO:0042719)
0.0	0.2	GO:0033180	proton-transporting V-type ATPase, V1 domain(GO:0033180)

Gene overrepresentation in molecular_function category:

Search:

Show entries

Showing 1 to 16 of 16 entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	6.9	GO:0019531	secondary active sulfate transmembrane transporter activity(GO:0008271) oxalate transmembrane transporter activity(GO:0019531)
0.0	6.3	GO:0005096	GTPase activator activity(GO:0005096)
0.6	2.6	GO:0003976	UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity(GO:0003976)
0.0	2.3	GO:0004715	non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.1	2.2	GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity(GO:0004115)
0.1	2.0	GO:0070412	R-SMAD binding(GO:0070412)
0.1	1.4	GO:0048038	quinone binding(GO:0048038)
0.1	1.3	GO:0005522	profilin binding(GO:0005522)
0.1	0.9	GO:0031811	G-protein coupled nucleotide receptor binding(GO:0031811) P2Y1 nucleotide receptor binding(GO:0031812)
0.1	0.9	GO:0015114	phosphate ion transmembrane transporter activity(GO:0015114)
0.2	0.8	GO:0004359	glutaminase activity(GO:0004359)
0.0	0.8	GO:0004714	transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0	0.7	GO:0005160	transforming growth factor beta receptor binding(GO:0005160)
0.1	0.6	GO:0008273	calcium, potassium:sodium antiporter activity(GO:0008273)
0.1	0.4	GO:0004984	olfactory receptor activity(GO:0004984)
0.0	0.2	GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)

Gene overrepresentation in C2:CP category:

Search:

Show entries

Showing 1 to 5 of 5 entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.3	PID_LIS1_PATHWAY	Lissencephaly gene (LIS1) in neuronal migration and development
0.0	2.3	PID_KIT_PATHWAY	Signaling events mediated by Stem cell factor receptor (c-Kit)
0.0	2.2	NABA_SECRETED_FACTORS	Genes encoding secreted soluble factors
0.0	0.9	ST_GA12_PATHWAY	G alpha 12 Pathway
0.0	0.8	PID_ANGIOPOIETIN_RECEPTOR_PATHWAY	Angiopoietin receptor Tie2-mediated signaling

Gene overrepresentation in C2:CP:REACTOME category:

Search:

Show entries

Showing 1 to 10 of 10 entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	7.5	REACTOME_TRANSPORT_OF_INORGANIC_CATIONS_ANIONS_AND_AMINO_ACIDS_OLIGOPEPTIDES	Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides
0.0	2.3	REACTOME_SIGNALING_BY_ERBB2	Genes involved in Signaling by ERBB2
0.0	2.3	REACTOME_L1CAM_INTERACTIONS	Genes involved in L1CAM interactions
0.1	2.2	REACTOME_DARPP_32_EVENTS	Genes involved in DARPP-32 events
0.2	1.4	REACTOME_GAMMA_CARBOXYLATION_TRANSPORT_AND_AMINO_TERMINAL_CLEAVAGE_OF_PROTEINS	Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins
0.0	0.9	REACTOME_DEADENYLATION_OF_MRNA	Genes involved in Deadenylation of mRNA
0.0	0.9	REACTOME_GLUCOSE_TRANSPORT	Genes involved in Glucose transport
0.1	0.8	REACTOME_GLUTAMATE_NEUROTRANSMITTER_RELEASE_CYCLE	Genes involved in Glutamate Neurotransmitter Release Cycle
0.0	0.8	REACTOME_TIE2_SIGNALING	Genes involved in Tie2 Signaling
0.0	0.6	REACTOME_ENDOSOMAL_SORTING_COMPLEX_REQUIRED_FOR_TRANSPORT_ESCRT	Genes involved in Endosomal Sorting Complex Required For Transport (ESCRT)