mm10_v2_chr16_+_30065333_30065351	7.31262	Arnt	ENSMUST00000023171.7|Hes1|ENSMUSG00000022528.7|hairy and enhancer of split 1 (Drosophila)
mm10_v2_chr4_+_125490688_125490704	6.06806	Arnt	ENSMUST00000030676.7|Grik3|ENSMUSG00000001985.9|glutamate receptor, ionotropic, kainate 3
mm10_v2_chr5_+_75075464_75075601	4.59413	Arnt	ENSMUST00000160104.1|Gsx2|ENSMUSG00000035946.6|GS homeobox 2 	ENSMUST00000040477.3|Gsx2|ENSMUSG00000035946.6|GS homeobox 2
mm10_v2_chr8_-_46294592_46294671	4.15832	Arnt	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr2_+_84839395_84839424	3.73254	Arnt	ENSMUST00000146816.1|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1 	ENSMUST00000028469.7|Slc43a1|ENSMUSG00000027075.10|solute carrier family 43, member 1
mm10_v2_chr6_+_108660616_108660682	3.44285	Arnt	ENSMUST00000032194.4|Bhlhe40|ENSMUSG00000030103.5|basic helix-loop-helix family, member e40
mm10_v2_chr13_+_108316332_108316358	3.16756	Arnt	ENSMUST00000051594.5|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr13_+_108316395_108316422	3.15579	Arnt	ENSMUST00000171178.1|Depdc1b|ENSMUSG00000021697.6|DEP domain containing 1B
mm10_v2_chr5_-_45639501_45639525	3.04471	Arnt	ENSMUST00000016023.7|Fam184b|ENSMUSG00000015879.7|family with sequence similarity 184, member B
mm10_v2_chr3_+_131110350_131110471	2.98876	Arnt	ENSMUST00000066849.6|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000106341.2|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1 	ENSMUST00000029611.7|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr6_+_108660772_108660874	2.91621	Arnt	ENSMUST00000163617.1|Bhlhe40|ENSMUSG00000030103.5|basic helix-loop-helix family, member e40
mm10_v2_chr10_+_22158566_22158586	2.85177	Arnt	ENSMUST00000181645.1|Raet1e|ENSMUSG00000053219.9|retinoic acid early transcript 1E 	ENSMUST00000105522.2|H60b|ENSMUSG00000075297.4|histocompatibility 60b
mm10_v2_chr15_-_74672560_74672577	2.78297	Arnt	ENSMUST00000023268.7|Arc|ENSMUSG00000022602.8|activity regulated cytoskeletal-associated protein 	ENSMUST00000110009.3|Arc|ENSMUSG00000022602.8|activity regulated cytoskeletal-associated protein
mm10_v2_chr12_-_56535047_56535106	2.66175	Arnt	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr17_+_56040350_56040420	2.52154	Arnt	ENSMUST00000002914.8|Chaf1a|ENSMUSG00000002835.8|chromatin assembly factor 1, subunit A (p150)
mm10_v2_chr9_-_22389113_22389206	2.39778	Arnt	ENSMUST00000040912.7|Anln|ENSMUSG00000036777.7|anillin, actin binding protein
mm10_v2_chr11_+_98937669_98937735	2.36133	Arnt	ENSMUST00000107475.2|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha 	ENSMUST00000068133.3|Rara|ENSMUSG00000037992.10|retinoic acid receptor, alpha
mm10_v2_chr17_+_27556613_27556635	2.23299	Arnt	ENSMUST00000117600.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000114888.3|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr17_+_27556641_27556658	2.17619	Arnt	ENSMUST00000119486.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118599.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr11_+_82388900_82388900	2.05357	Arnt	ENSMUST00000054245.4|Tmem132e|ENSMUSG00000020701.6|transmembrane protein 132E 	ENSMUST00000092852.2|Tmem132e|ENSMUSG00000020701.6|transmembrane protein 132E
mm10_v2_chr17_+_27556668_27556690	2.04158	Arnt	ENSMUST00000117254.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1 	ENSMUST00000118570.1|Hmga1|ENSMUSG00000046711.9|high mobility group AT-hook 1
mm10_v2_chr3_+_137864573_137864613	1.97783	Arnt	ENSMUST00000174561.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z 	ENSMUST00000173790.1|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr3_-_95882193_95882231	1.95674	Arnt	ENSMUST00000159863.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000159739.1|Gm129|ENSMUSG00000038550.4|predicted gene 129 	ENSMUST00000036418.3|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr3_+_137864487_137864525	1.94839	Arnt	ENSMUST00000041045.7|H2afz|ENSMUSG00000037894.7|H2A histone family, member Z
mm10_v2_chr4_-_97778042_97778071	1.92906	Arnt	ENSMUST00000146447.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr15_+_74721193_74721234	1.88516	Arnt	ENSMUST00000070923.1|Them6|ENSMUSG00000056665.1|thioesterase superfamily member 6
mm10_v2_chr2_+_121449362_121449393	1.78615	Arnt	ENSMUST00000110615.1|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2 	ENSMUST00000099475.5|Serf2|ENSMUSG00000074884.6|small EDRK-rich factor 2
mm10_v2_chr5_-_106458440_106458470	1.60786	Arnt	ENSMUST00000086795.6|Barhl2|ENSMUSG00000034384.10|BarH-like 2 (Drosophila)
mm10_v2_chr5_-_149051300_149051390	1.58299	Arnt	ENSMUST00000110505.1|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr19_-_10203880_10204169	1.55278	Arnt	ENSMUST00000142241.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000116542.2|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000025651.5|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1 	ENSMUST00000156291.1|Fen1|ENSMUSG00000024742.9|flap structure specific endonuclease 1
mm10_v2_chr6_-_6217023_6217125	1.50904	Arnt	ENSMUST00000015256.8|Slc25a13|ENSMUSG00000015112.9|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13
mm10_v2_chr1_+_84839833_84839875	1.4383	Arnt	ENSMUST00000097672.3|Fbxo36|ENSMUSG00000073633.3|F-box protein 36
mm10_v2_chr9_-_20976762_20976793	1.40002	Arnt	ENSMUST00000054197.5|S1pr2|ENSMUSG00000043895.5|sphingosine-1-phosphate receptor 2
mm10_v2_chr11_-_64436653_64436653	1.39135	Arnt	ENSMUST00000177999.1|F930015N05Rik|ENSMUSG00000095224.1|RIKEN cDNA F930015N05 gene
mm10_v2_chr2_+_122234749_122234822	1.37284	Arnt	ENSMUST00000110551.3|Sord|ENSMUSG00000027227.7|sorbitol dehydrogenase
mm10_v2_chr18_+_53176345_53176376	1.31645	Arnt	ENSMUST00000037850.5|Snx2|ENSMUSG00000034484.7|sorting nexin 2
mm10_v2_chr7_+_110122299_110122350	1.3144	Arnt	ENSMUST00000033326.8|Wee1|ENSMUSG00000031016.8|WEE 1 homolog 1 (S. pombe)
mm10_v2_chrX_+_134601179_134601266	1.30976	Arnt	ENSMUST00000074950.4|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113203.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000113202.1|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr11_-_17211504_17211573	1.27149	Arnt	ENSMUST00000020317.7|Pno1|ENSMUSG00000020116.7|partner of NOB1 homolog (S. cerevisiae)
mm10_v2_chr19_+_41911851_41911874	1.2259	Arnt	ENSMUST00000011896.6|Pgam1|ENSMUSG00000011752.6|phosphoglycerate mutase 1
mm10_v2_chr11_+_101316200_101316275	1.22182	Arnt	ENSMUST00000142640.1|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki) 	ENSMUST00000019470.7|Psme3|ENSMUSG00000078652.3|proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)
mm10_v2_chr3_-_95882232_95882251	1.19421	Arnt	ENSMUST00000161866.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr9_-_121857952_121858012	1.14516	Arnt	ENSMUST00000060251.6|Higd1a|ENSMUSG00000038412.7|HIG1 domain family, member 1A
mm10_v2_chr1_-_75219245_75219262	1.09968	Arnt	ENSMUST00000079464.6|Tuba4a|ENSMUSG00000026202.7|tubulin, alpha 4A
mm10_v2_chrX_+_134601271_134601286	1.09928	Arnt	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr1_+_9545397_9545479	1.08881	Arnt	ENSMUST00000072079.7|Rrs1|ENSMUSG00000061024.7|RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
mm10_v2_chr6_-_125165576_125165612	1.08363	Arnt	ENSMUST00000183272.1|Gapdh|ENSMUSG00000057666.12|glyceraldehyde-3-phosphate dehydrogenase 	ENSMUST00000182052.1|Gapdh|ENSMUSG00000057666.12|glyceraldehyde-3-phosphate dehydrogenase 	ENSMUST00000182277.1|Gapdh|ENSMUSG00000057666.12|glyceraldehyde-3-phosphate dehydrogenase
mm10_v2_chr13_+_55321991_55322055	1.07897	Arnt	ENSMUST00000021942.6|Prelid1|ENSMUSG00000021486.6|PRELI domain containing 1
mm10_v2_chr9_+_107569112_107569135	1.06599	Arnt	ENSMUST00000010191.7|Hyal2|ENSMUSG00000010047.7|hyaluronoglucosaminidase 2
mm10_v2_chr5_-_52566264_52566312	1.0499	Arnt	ENSMUST00000039750.5|Lgi2|ENSMUSG00000039252.7|leucine-rich repeat LGI family, member 2
mm10_v2_chr3_-_153725062_153725179	0.997113	Arnt	ENSMUST00000064460.5|St6galnac3|ENSMUSG00000052544.5|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
mm10_v2_chr2_+_31572775_31572841	0.979221	Arnt	ENSMUST00000137889.1|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr10_+_42502197_42502290	0.952462	Arnt	ENSMUST00000105499.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr6_-_125165707_125165773	0.943515	Arnt	ENSMUST00000118875.1|Gapdh|ENSMUSG00000057666.12|glyceraldehyde-3-phosphate dehydrogenase
mm10_v2_chr2_+_31572651_31572678	0.921311	Arnt	ENSMUST00000113482.1|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr11_+_120491840_120491889	0.915487	Arnt	ENSMUST00000026899.3|Slc25a10|ENSMUSG00000025792.3|solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10
mm10_v2_chr3_-_95882031_95882074	0.914322	Arnt	ENSMUST00000161994.1|Gm129|ENSMUSG00000038550.4|predicted gene 129
mm10_v2_chr1_-_178337774_178337797	0.905842	Arnt	ENSMUST00000037748.7|Hnrnpu|ENSMUSG00000039630.8|heterogeneous nuclear ribonucleoprotein U
mm10_v2_chr7_+_28810928_28810951	0.902388	Arnt	ENSMUST00000174477.1|Hnrnpl|ENSMUSG00000015165.10|heterogeneous nuclear ribonucleoprotein L
mm10_v2_chr13_+_37826225_37826315	0.902267	Arnt	ENSMUST00000128570.1|Rreb1|ENSMUSG00000039087.10|ras responsive element binding protein 1
mm10_v2_chr5_+_115011111_115011208	0.900068	Arnt	ENSMUST00000031530.5|Sppl3|ENSMUSG00000029550.8|signal peptide peptidase 3
mm10_v2_chr17_-_65613521_65613555	0.896547	Arnt	ENSMUST00000024897.8|Vapa|ENSMUSG00000024091.8|vesicle-associated membrane protein, associated protein A
mm10_v2_chr4_+_128654686_128654738	0.895441	Arnt	ENSMUST00000030588.6|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila) 	ENSMUST00000136377.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr7_+_28810886_28810918	0.866556	Arnt	ENSMUST00000038572.8|Hnrnpl|ENSMUSG00000015165.10|heterogeneous nuclear ribonucleoprotein L
mm10_v2_chr2_+_31572701_31572725	0.847155	Arnt	ENSMUST00000055244.6|Fubp3|ENSMUSG00000026843.9|far upstream element (FUSE) binding protein 3
mm10_v2_chr4_+_101419696_101419733	0.84395	Arnt	ENSMUST00000131397.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4 	ENSMUST00000133055.1|Ak4|ENSMUSG00000028527.12|adenylate kinase 4
mm10_v2_chr5_-_149636331_149636376	0.833757	Arnt	ENSMUST00000074846.7|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000110498.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000127977.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1 	ENSMUST00000132412.1|Hsph1|ENSMUSG00000029657.9|heat shock 105kDa/110kDa protein 1
mm10_v2_chr19_-_42129043_42129069	0.826312	Arnt	ENSMUST00000018965.3|Avpi1|ENSMUSG00000018821.3|arginine vasopressin-induced 1
mm10_v2_chr9_-_99876147_99876193	0.824898	Arnt	ENSMUST00000054819.8|Sox14|ENSMUSG00000053747.8|SRY-box containing gene 14
mm10_v2_chr5_+_76951307_76951368	0.791383	Arnt	ENSMUST00000031160.9|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 	ENSMUST00000120912.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase 	ENSMUST00000117536.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm10_v2_chr6_-_85451248_85451283	0.789418	Arnt	ENSMUST00000113770.1|Pradc1|ENSMUSG00000030008.3|protease-associated domain containing 1 	ENSMUST00000032080.2|Pradc1|ENSMUSG00000030008.3|protease-associated domain containing 1
mm10_v2_chr10_+_42502030_42502041	0.789102	Arnt	ENSMUST00000105500.1|Snx3|ENSMUSG00000019804.6|sorting nexin 3 	ENSMUST00000019939.5|Snx3|ENSMUSG00000019804.6|sorting nexin 3
mm10_v2_chr19_+_55741810_55741842	0.786097	Arnt	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr1_-_17097839_17097889	0.785876	Arnt	ENSMUST00000038382.4|Jph1|ENSMUSG00000042686.4|junctophilin 1
mm10_v2_chr9_-_78480736_78480841	0.77111	Arnt	ENSMUST00000156988.1|Eef1a1|ENSMUSG00000037742.8|eukaryotic translation elongation factor 1 alpha 1
mm10_v2_chr2_+_75659253_75659318	0.769274	Arnt	ENSMUST00000111964.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111962.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000111961.1|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000164947.2|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3 	ENSMUST00000090792.4|Hnrnpa3|ENSMUSG00000059005.7|heterogeneous nuclear ribonucleoprotein A3
mm10_v2_chr10_-_4387436_4387479	0.767397	Arnt	ENSMUST00000100077.3|Zbtb2|ENSMUSG00000075327.3|zinc finger and BTB domain containing 2
mm10_v2_chr1_+_17727034_17727088	0.738787	Arnt	ENSMUST00000159958.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000160305.1|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1 	ENSMUST00000095075.4|Crispld1|ENSMUSG00000025776.7|cysteine-rich secretory protein LCCL domain containing 1
mm10_v2_chr9_-_91365778_91365815	0.728827	Arnt	ENSMUST00000065360.3|Zic1|ENSMUSG00000032368.8|zinc finger protein of the cerebellum 1
mm10_v2_chr7_+_100159241_100159315	0.722615	Arnt	ENSMUST00000032967.3|Lipt2|ENSMUSG00000030725.3|lipoyl(octanoyl) transferase 2 (putative)
mm10_v2_chr11_-_93885752_93885773	0.722011	Arnt	ENSMUST00000066888.3|Utp18|ENSMUSG00000054079.6|UTP18, small subunit (SSU) processome component, homolog (yeast)
mm10_v2_chr9_-_110654161_110654212	0.719226	Arnt	ENSMUST00000133191.1|Nbeal2|ENSMUSG00000056724.8|neurobeachin-like 2 	ENSMUST00000167320.1|Nbeal2|ENSMUSG00000056724.8|neurobeachin-like 2
mm10_v2_chr11_-_76217490_76217664	0.712012	Arnt	ENSMUST00000102500.4|Gemin4|ENSMUSG00000049396.6|gem (nuclear organelle) associated protein 4
mm10_v2_chr3_-_107458895_107458920	0.707525	Arnt	ENSMUST00000009617.8|Kcnc4|ENSMUSG00000027895.8|potassium voltage gated channel, Shaw-related subfamily, member 4
mm10_v2_chr11_+_78178651_78178772	0.707065	Arnt	ENSMUST00000092880.7|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1 	ENSMUST00000127587.1|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1 	ENSMUST00000108338.1|Tlcd1|ENSMUSG00000019437.11|TLC domain containing 1
mm10_v2_chr3_-_90052463_90052521	0.692865	Arnt	ENSMUST00000029553.9|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000064639.8|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like 	ENSMUST00000090908.6|Ubap2l|ENSMUSG00000042520.10|ubiquitin associated protein 2-like
mm10_v2_chr4_-_41275091_41275144	0.690275	Arnt	ENSMUST00000030143.6|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2 	ENSMUST00000108068.1|Ubap2|ENSMUSG00000028433.8|ubiquitin-associated protein 2
mm10_v2_chr4_+_152325831_152325876	0.67168	Arnt	ENSMUST00000103191.4|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22 	ENSMUST00000139685.1|Rpl22|ENSMUSG00000028936.9|ribosomal protein L22
mm10_v2_chr4_-_137048695_137048807	0.669997	Arnt	ENSMUST00000049583.7|Zbtb40|ENSMUSG00000060862.9|zinc finger and BTB domain containing 40
mm10_v2_chr4_-_108833544_108833597	0.661317	Arnt	ENSMUST00000102740.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4 	ENSMUST00000102741.1|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr19_+_41981709_41981778	0.653379	Arnt	ENSMUST00000026170.1|Ubtd1|ENSMUSG00000025171.1|ubiquitin domain containing 1
mm10_v2_chr8_-_45999860_45999873	0.650232	Arnt	ENSMUST00000053558.9|Ankrd37|ENSMUSG00000050914.9|ankyrin repeat domain 37
mm10_v2_chr14_-_55660397_55660508	0.637787	Arnt	ENSMUST00000002400.6|Mdp1|ENSMUSG00000002329.6|magnesium-dependent phosphatase 1
mm10_v2_chr2_-_131160006_131160081	0.635635	Arnt	ENSMUST00000103188.3|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000133602.1|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene 	ENSMUST00000028800.5|1700037H04Rik|ENSMUSG00000027327.10|RIKEN cDNA 1700037H04 gene
mm10_v2_chr5_+_76951382_76951394	0.632319	Arnt	ENSMUST00000141687.1|Paics|ENSMUSG00000029247.11|phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
mm10_v2_chr16_+_94085226_94085260	0.630357	Arnt	ENSMUST00000072182.7|Sim2|ENSMUSG00000062713.7|single-minded homolog 2 (Drosophila)
mm10_v2_chr13_-_38658991_38659038	0.612058	Arnt	ENSMUST00000001757.7|Eef1e1|ENSMUSG00000001707.7|eukaryotic translation elongation factor 1 epsilon 1
mm10_v2_chr14_-_52197216_52197267	0.610764	Arnt	ENSMUST00000046709.7|Supt16|ENSMUSG00000035726.7|suppressor of Ty 16
mm10_v2_chr2_+_144368961_144369062	0.610205	Arnt	ENSMUST00000028911.8|Csrp2bp|ENSMUSG00000027425.12|cysteine and glycine-rich protein 2 binding protein 	ENSMUST00000147747.1|Csrp2bp|ENSMUSG00000027425.12|cysteine and glycine-rich protein 2 binding protein 	ENSMUST00000183618.1|Pet117|ENSMUSG00000098387.1|PET117 homolog (S. cerevisiae)
mm10_v2_chr15_+_99126513_99126616	0.583258	Arnt	ENSMUST00000063517.4|Spats2|ENSMUSG00000051934.4|spermatogenesis associated, serine-rich 2
mm10_v2_chr9_-_91365756_91365774	0.582419	Arnt	ENSMUST00000034927.6|Zic1|ENSMUSG00000032368.8|zinc finger protein of the cerebellum 1
mm10_v2_chrX_-_134600976_134601125	0.580759	Arnt	ENSMUST00000033621.6|Gla|ENSMUSG00000031266.6|galactosidase, alpha
mm10_v2_chr15_-_79834224_79834245	0.575665	Arnt	ENSMUST00000109623.1|Cbx6|ENSMUSG00000089715.5|chromobox 6 	ENSMUST00000023060.6|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000089299.5|Npcd|ENSMUSG00000089837.3|neuronal pentraxin chromo domain 	ENSMUST00000109625.1|Cbx6|ENSMUSG00000089715.5|chromobox 6
mm10_v2_chr5_-_137786681_137786715	0.558466	Arnt	ENSMUST00000132726.1|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr1_+_23761749_23761759	0.55349	Arnt	ENSMUST00000144602.1|B3gat2|ENSMUSG00000026156.8|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm10_v2_chr8_+_56294552_56294592	0.544728	Arnt	ENSMUST00000034026.8|Hpgd|ENSMUSG00000031613.8|hydroxyprostaglandin dehydrogenase 15 (NAD)
mm10_v2_chr10_-_85916902_85917006	0.539548	Arnt	ENSMUST00000037646.7|Prdm4|ENSMUSG00000035529.9|PR domain containing 4
mm10_v2_chr5_+_120116480_120116525	0.538219	Arnt	ENSMUST00000031590.8|Rbm19|ENSMUSG00000029594.9|RNA binding motif protein 19
mm10_v2_chr8_+_13159135_13159168	0.534557	Arnt	ENSMUST00000033824.6|Lamp1|ENSMUSG00000031447.6|lysosomal-associated membrane protein 1
mm10_v2_chr7_+_127967457_127967508	0.53126	Arnt	ENSMUST00000106251.3|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000077609.5|Fus|ENSMUSG00000030795.12|fused in sarcoma 	ENSMUST00000121616.2|Fus|ENSMUSG00000030795.12|fused in sarcoma
mm10_v2_chr5_-_137786651_137786668	0.524413	Arnt	ENSMUST00000031740.9|Mepce|ENSMUSG00000029726.10|methylphosphate capping enzyme
mm10_v2_chr8_-_124949165_124949372	0.514041	Arnt	ENSMUST00000034469.5|Egln1|ENSMUSG00000031987.5|EGL nine homolog 1 (C. elegans)
mm10_v2_chr17_-_33824346_33824562	0.506247	Arnt	ENSMUST00000173879.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000166693.2|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173019.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000087342.6|Rps28|ENSMUSG00000067288.6|ribosomal protein S28 	ENSMUST00000173844.1|Rps28|ENSMUSG00000067288.6|ribosomal protein S28
mm10_v2_chr2_+_85037448_85037530	0.501761	Arnt	ENSMUST00000168266.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1 	ENSMUST00000130729.1|Ssrp1|ENSMUSG00000027067.10|structure specific recognition protein 1
mm10_v2_chr2_+_167503089_167503224	0.495365	Arnt	ENSMUST00000078050.6|Rnf114|ENSMUSG00000006418.11|ring finger protein 114
mm10_v2_chr16_-_5049882_5049910	0.48522	Arnt	ENSMUST00000023189.7|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis) 	ENSMUST00000115844.1|Glyr1|ENSMUSG00000022536.7|glyoxylate reductase 1 homolog (Arabidopsis)
mm10_v2_chr15_+_98167806_98167873	0.476719	Arnt	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr5_-_65435717_65435734	0.476446	Arnt	ENSMUST00000117542.1|Ugdh|ENSMUSG00000029201.8|UDP-glucose dehydrogenase
mm10_v2_chr11_+_3289168_3289281	0.475047	Arnt	ENSMUST00000134089.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr14_-_50930803_50930878	0.473972	Arnt	ENSMUST00000160538.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000162957.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000161166.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000160835.1|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b 	ENSMUST00000049312.7|Tmem55b|ENSMUSG00000035953.7|transmembrane protein 55b
mm10_v2_chr10_-_79766872_79766952	0.473011	Arnt	ENSMUST00000047203.8|Rnf126|ENSMUSG00000035890.8|ring finger protein 126
mm10_v2_chr19_-_42128982_42129041	0.468209	Arnt	ENSMUST00000161873.1|Avpi1|ENSMUSG00000018821.3|arginine vasopressin-induced 1
mm10_v2_chr19_-_60581013_60581025	0.467342	Arnt	ENSMUST00000111460.3|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000081790.7|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1 	ENSMUST00000166712.1|Cacul1|ENSMUSG00000033417.9|CDK2 associated, cullin domain 1
mm10_v2_chr8_+_62951195_62951232	0.44616	Arnt	ENSMUST00000118003.1|Spock3|ENSMUSG00000054162.9|sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
mm10_v2_chr15_-_36608959_36608983	0.445008	Arnt	ENSMUST00000001809.8|Pabpc1|ENSMUSG00000022283.8|poly(A) binding protein, cytoplasmic 1
mm10_v2_chr17_-_56935388_56935504	0.442465	Arnt	ENSMUST00000025053.8|Mllt1|ENSMUSG00000024212.8|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1
mm10_v2_chr11_+_69935796_69935817	0.439725	Arnt	ENSMUST00000018698.5|Ybx2|ENSMUSG00000018554.7|Y box protein 2
mm10_v2_chr17_-_45573253_45573272	0.436129	Arnt	ENSMUST00000165127.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1 	ENSMUST00000166469.1|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1 	ENSMUST00000024739.7|Hsp90ab1|ENSMUSG00000023944.8|heat shock protein 90 alpha (cytosolic), class B member 1
mm10_v2_chr4_-_151044564_151044691	0.434645	Arnt	ENSMUST00000103204.4|Per3|ENSMUSG00000028957.6|period circadian clock 3
mm10_v2_chr11_+_3289880_3289993	0.426502	Arnt	ENSMUST00000110043.1|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1 	ENSMUST00000094471.3|Patz1|ENSMUSG00000020453.11|POZ (BTB) and AT hook containing zinc finger 1
mm10_v2_chr5_-_65435881_65435946	0.4231	Arnt	ENSMUST00000031103.7|Ugdh|ENSMUSG00000029201.8|UDP-glucose dehydrogenase
mm10_v2_chr10_-_62486772_62486805	0.417191	Arnt	ENSMUST00000105447.3|Vps26a|ENSMUSG00000020078.9|vacuolar protein sorting 26 homolog A (yeast)
mm10_v2_chr7_-_45466894_45466901	0.411635	Arnt	ENSMUST00000033093.8|Bax|ENSMUSG00000003873.10|BCL2-associated X protein
mm10_v2_chr11_-_102697710_102697782	0.411395	Arnt	ENSMUST00000164506.2|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43 	ENSMUST00000092569.6|Ccdc43|ENSMUSG00000020925.10|coiled-coil domain containing 43
mm10_v2_chr17_-_33940299_33940343	0.407321	Arnt	ENSMUST00000173363.1|H2-Ke2|ENSMUSG00000024309.8|H2-K region expressed gene 2 	ENSMUST00000174048.1|H2-Ke2|ENSMUSG00000024309.8|H2-K region expressed gene 2 	ENSMUST00000179418.1|H2-Ke2|ENSMUSG00000024309.8|H2-K region expressed gene 2 	ENSMUST00000174426.1|H2-Ke2|ENSMUSG00000024309.8|H2-K region expressed gene 2 	ENSMUST00000025163.7|H2-Ke2|ENSMUSG00000024309.8|H2-K region expressed gene 2
mm10_v2_chr2_-_26237368_26237525	0.404355	Arnt	ENSMUST00000036187.8|Qsox2|ENSMUSG00000036327.12|quiescin Q6 sulfhydryl oxidase 2
mm10_v2_chr15_+_80255184_80255263	0.398989	Arnt	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr1_-_82291370_82291416	0.397671	Arnt	ENSMUST00000069799.2|Irs1|ENSMUSG00000055980.2|insulin receptor substrate 1
mm10_v2_chr11_+_70000578_70000624	0.395331	Arnt	ENSMUST00000019362.8|Dvl2|ENSMUSG00000020888.10|dishevelled 2, dsh homolog (Drosophila)
mm10_v2_chr2_+_130274437_130274492	0.394772	Arnt	ENSMUST00000141872.1|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr11_-_115536181_115536276	0.391854	Arnt	ENSMUST00000118155.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast) 	ENSMUST00000153892.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast)
mm10_v2_chr2_+_130274424_130274435	0.387422	Arnt	ENSMUST00000103198.4|Nop56|ENSMUSG00000027405.10|NOP56 ribonucleoprotein
mm10_v2_chr10_+_127677064_127677099	0.378012	Arnt	ENSMUST00000118612.1|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194 	ENSMUST00000048099.4|Tmem194|ENSMUSG00000040195.5|transmembrane protein 194
mm10_v2_chrX_-_136068236_136068236	0.376565	Arnt	ENSMUST00000049130.7|Bex2|ENSMUSG00000042750.7|brain expressed X-linked 2
mm10_v2_chr19_-_4625612_4625658	0.373241	Arnt	ENSMUST00000025823.3|Rce1|ENSMUSG00000024889.3|RCE1 homolog, prenyl protein peptidase (S. cerevisiae)
mm10_v2_chr3_-_96727436_96727452	0.373113	Arnt	ENSMUST00000154679.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr3_+_41564880_41564933	0.362785	Arnt	ENSMUST00000168086.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr6_+_125131869_125131953	0.361239	Arnt	ENSMUST00000044200.8|Nop2|ENSMUSG00000038279.8|NOP2 nucleolar protein
mm10_v2_chr19_-_5424759_5424811	0.358337	Arnt	ENSMUST00000148219.2|Drap1|ENSMUSG00000024914.10|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm10_v2_chr7_+_3704307_3704334	0.356901	Arnt	ENSMUST00000108624.1|Rps9|ENSMUSG00000006333.8|ribosomal protein S9 	ENSMUST00000126562.1|Rps9|ENSMUSG00000006333.8|ribosomal protein S9
mm10_v2_chr6_-_91473361_91473470	0.356392	Arnt	ENSMUST00000040835.7|Chchd4|ENSMUSG00000034203.7|coiled-coil-helix-coiled-coil-helix domain containing 4
mm10_v2_chr17_-_27133902_27133924	0.35499	Arnt	ENSMUST00000119227.1|Uqcc2|ENSMUSG00000024208.9|ubiquinol-cytochrome c reductase complex assembly factor 2 	ENSMUST00000025045.8|Uqcc2|ENSMUSG00000024208.9|ubiquinol-cytochrome c reductase complex assembly factor 2
mm10_v2_chr13_-_54687696_54687809	0.354879	Arnt	ENSMUST00000177950.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000146931.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr2_+_158028687_158028729	0.354803	Arnt	ENSMUST00000109518.1|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B 	ENSMUST00000029180.7|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr7_+_35802593_35802593	0.352897	Arnt	ENSMUST00000052454.2|E130304I02Rik|ENSMUSG00000044997.2|RIKEN cDNA E130304I02 gene
mm10_v2_chr12_+_76837408_76837466	0.352157	Arnt	ENSMUST00000041008.9|Fntb|ENSMUSG00000033373.10|farnesyltransferase, CAAX box, beta
mm10_v2_chr5_-_76951560_76951589	0.35032	Arnt	ENSMUST00000140076.1|Ppat|ENSMUSG00000029246.8|phosphoribosyl pyrophosphate amidotransferase
mm10_v2_chr9_+_120492606_120492640	0.349982	Arnt	ENSMUST00000007139.4|Eif1b|ENSMUSG00000006941.4|eukaryotic translation initiation factor 1B
mm10_v2_chr1_+_74506044_74506105	0.343726	Arnt	ENSMUST00000087215.5|Rqcd1|ENSMUSG00000026174.8|rcd1 (required for cell differentiation) homolog 1 (S. pombe)
mm10_v2_chr3_-_96727566_96727628	0.342331	Arnt	ENSMUST00000029741.2|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr3_+_90052814_90052936	0.340133	Arnt	ENSMUST00000160640.1|4933434E20Rik|ENSMUSG00000027942.10|RIKEN cDNA 4933434E20 gene 	ENSMUST00000029552.6|4933434E20Rik|ENSMUSG00000027942.10|RIKEN cDNA 4933434E20 gene 	ENSMUST00000162114.1|4933434E20Rik|ENSMUSG00000027942.10|RIKEN cDNA 4933434E20 gene 	ENSMUST00000068798.6|4933434E20Rik|ENSMUSG00000027942.10|RIKEN cDNA 4933434E20 gene
mm10_v2_chr4_-_139352538_139352586	0.338987	Arnt	ENSMUST00000102503.3|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm10_v2_chr7_+_28741968_28742013	0.33632	Arnt	ENSMUST00000094632.4|Sars2|ENSMUSG00000070699.4|seryl-aminoacyl-tRNA synthetase 2
mm10_v2_chr2_+_158028481_158028539	0.334679	Arnt	ENSMUST00000103123.3|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr10_-_115315546_115315615	0.334439	Arnt	ENSMUST00000020343.7|Rab21|ENSMUSG00000020132.9|RAB21, member RAS oncogene family
mm10_v2_chr15_-_79834261_79834285	0.329367	Arnt	ENSMUST00000148358.1|Cbx6|ENSMUSG00000089715.5|chromobox 6
mm10_v2_chr16_-_4790220_4790300	0.32744	Arnt	ENSMUST00000118703.1|Cdip1|ENSMUSG00000004071.6|cell death inducing Trp53 target 1
mm10_v2_chr7_+_3703979_3704024	0.322956	Arnt	ENSMUST00000006496.8|Rps9|ENSMUSG00000006333.8|ribosomal protein S9
mm10_v2_chr3_+_96727611_96727620	0.317102	Arnt	ENSMUST00000029740.9|Rnf115|ENSMUSG00000028098.9|ring finger protein 115
mm10_v2_chr2_+_90847149_90847160	0.316683	Arnt	ENSMUST00000136872.1|Mtch2|ENSMUSG00000027282.11|mitochondrial carrier homolog 2 (C. elegans)
mm10_v2_chr2_+_173737492_173737511	0.30482	Arnt	ENSMUST00000067530.4|Vapb|ENSMUSG00000054455.4|vesicle-associated membrane protein, associated protein B and C
mm10_v2_chr14_-_46390576_46390669	0.303099	Arnt	ENSMUST00000074077.5|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr4_+_123917420_123917510	0.294981	Arnt	ENSMUST00000030399.6|Rragc|ENSMUSG00000028646.10|Ras-related GTP binding C
mm10_v2_chr4_-_108833608_108833626	0.291809	Arnt	ENSMUST00000102742.4|Btf3l4|ENSMUSG00000028568.10|basic transcription factor 3-like 4
mm10_v2_chr17_-_26939464_26939525	0.291225	Arnt	ENSMUST00000025027.8|Cuta|ENSMUSG00000024194.9|cutA divalent cation tolerance homolog (E. coli) 	ENSMUST00000114935.1|Cuta|ENSMUSG00000024194.9|cutA divalent cation tolerance homolog (E. coli)
mm10_v2_chr4_-_139352298_139352313	0.28999	Arnt	ENSMUST00000030513.6|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae) 	ENSMUST00000155257.1|Mrto4|ENSMUSG00000028741.7|MRT4, mRNA turnover 4, homolog (S. cerevisiae)
mm10_v2_chr3_-_96727453_96727505	0.287889	Arnt	ENSMUST00000141377.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C 	ENSMUST00000125183.1|Polr3c|ENSMUSG00000028099.2|polymerase (RNA) III (DNA directed) polypeptide C
mm10_v2_chr11_+_17211912_17211964	0.284167	Arnt	ENSMUST00000046955.6|Wdr92|ENSMUSG00000078970.5|WD repeat domain 92
mm10_v2_chr15_+_79347534_79347556	0.283299	Arnt	ENSMUST00000096350.3|Maff|ENSMUSG00000042622.7|v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)
mm10_v2_chr11_+_3202612_3202663	0.282025	Arnt	ENSMUST00000110049.1|Eif4enif1|ENSMUSG00000020454.11|eukaryotic translation initiation factor 4E nuclear import factor 1
mm10_v2_chr11_+_97703394_97703455	0.281938	Arnt	ENSMUST00000103147.4|Psmb3|ENSMUSG00000069744.7|proteasome (prosome, macropain) subunit, beta type 3
mm10_v2_chr18_+_10617768_10617845	0.281856	Arnt	ENSMUST00000002551.3|Snrpd1|ENSMUSG00000002477.4|small nuclear ribonucleoprotein D1
mm10_v2_chr3_+_88297147_88297193	0.281752	Arnt	ENSMUST00000164166.1|Cct3|ENSMUSG00000001416.7|chaperonin containing Tcp1, subunit 3 (gamma) 	ENSMUST00000168062.1|Cct3|ENSMUSG00000001416.7|chaperonin containing Tcp1, subunit 3 (gamma)
mm10_v2_chr3_+_88297115_88297144	0.279042	Arnt	ENSMUST00000001452.7|Cct3|ENSMUSG00000001416.7|chaperonin containing Tcp1, subunit 3 (gamma)
mm10_v2_chr9_+_21368014_21368027	0.264131	Arnt	ENSMUST00000067646.4|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3 	ENSMUST00000115414.1|Ilf3|ENSMUSG00000032178.7|interleukin enhancer binding factor 3
mm10_v2_chr2_+_90847207_90847294	0.260121	Arnt	ENSMUST00000150232.1|Mtch2|ENSMUSG00000027282.11|mitochondrial carrier homolog 2 (C. elegans) 	ENSMUST00000111467.3|Mtch2|ENSMUSG00000027282.11|mitochondrial carrier homolog 2 (C. elegans)
mm10_v2_chr7_+_3704025_3704052	0.257059	Arnt	ENSMUST00000108623.1|Rps9|ENSMUSG00000006333.8|ribosomal protein S9 	ENSMUST00000139818.1|Rps9|ENSMUSG00000006333.8|ribosomal protein S9 	ENSMUST00000108625.1|Rps9|ENSMUSG00000006333.8|ribosomal protein S9
mm10_v2_chr2_-_165034821_165034867	0.252703	Arnt	ENSMUST00000153905.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000040381.8|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr14_-_46390501_46390550	0.251905	Arnt	ENSMUST00000100676.2|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr19_-_5424906_5425026	0.25134	Arnt	ENSMUST00000113674.1|Drap1|ENSMUSG00000024914.10|Dr1 associated protein 1 (negative cofactor 2 alpha) 	ENSMUST00000025853.9|Drap1|ENSMUSG00000024914.10|Dr1 associated protein 1 (negative cofactor 2 alpha)
mm10_v2_chr2_-_165034770_165034820	0.242184	Arnt	ENSMUST00000122070.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5 	ENSMUST00000121377.1|Ncoa5|ENSMUSG00000039804.9|nuclear receptor coactivator 5
mm10_v2_chr11_-_115535804_115535863	0.240303	Arnt	ENSMUST00000117589.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast) 	ENSMUST00000121185.1|Sumo2|ENSMUSG00000020738.10|SMT3 suppressor of mif two 3 homolog 2 (yeast)
mm10_v2_chr7_-_27166413_27166467	0.236398	Arnt	ENSMUST00000108382.1|Egln2|ENSMUSG00000058709.5|EGL nine homolog 2 (C. elegans)
mm10_v2_chr11_-_50325599_50325673	0.231282	Arnt	ENSMUST00000179865.1|Canx|ENSMUSG00000020368.9|calnexin 	ENSMUST00000020637.8|Canx|ENSMUSG00000020368.9|calnexin
mm10_v2_chr3_+_89164790_89164863	0.229919	Arnt	ENSMUST00000121212.2|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000152205.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000090927.5|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000148265.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2 	ENSMUST00000121931.1|Clk2|ENSMUSG00000068917.6|CDC-like kinase 2
mm10_v2_chr7_-_28981787_28981821	0.221362	Arnt	ENSMUST00000066070.5|Eif3k|ENSMUSG00000053565.9|eukaryotic translation initiation factor 3, subunit K
mm10_v2_chr3_+_107595031_107595164	0.214273	Arnt	ENSMUST00000014747.1|Alx3|ENSMUSG00000014603.1|aristaless-like homeobox 3
mm10_v2_chr7_-_28741749_28741777	0.207438	Arnt	ENSMUST00000171183.1|Mrps12|ENSMUSG00000045948.8|mitochondrial ribosomal protein S12
mm10_v2_chr7_-_28741780_28741843	0.205128	Arnt	ENSMUST00000056078.8|Mrps12|ENSMUSG00000045948.8|mitochondrial ribosomal protein S12
mm10_v2_chr12_-_59219725_59219776	0.200728	Arnt	ENSMUST00000043204.7|Fbxo33|ENSMUSG00000035329.7|F-box protein 33
mm10_v2_chr17_-_56609689_56609771	0.198648	Arnt	ENSMUST00000052832.5|2410015M20Rik|ENSMUSG00000049760.5|RIKEN cDNA 2410015M20 gene
mm10_v2_chr13_-_54688065_54688094	0.198225	Arnt	ENSMUST00000125871.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr16_+_44139821_44139900	0.193395	Arnt	ENSMUST00000159514.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000161326.1|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063520.8|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit 	ENSMUST00000063542.7|Naa50|ENSMUSG00000022698.11|N(alpha)-acetyltransferase 50, NatE catalytic subunit
mm10_v2_chr2_-_130582554_130582574	0.192385	Arnt	ENSMUST00000046001.6|Avp|ENSMUSG00000037727.6|arginine vasopressin
mm10_v2_chr16_+_45158725_45158810	0.184847	Arnt	ENSMUST00000023343.3|Atg3|ENSMUSG00000022663.3|autophagy related 3
mm10_v2_chr2_+_90940397_90940543	0.184798	Arnt	ENSMUST00000068726.6|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000005643.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000177642.1|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000111451.3|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1 	ENSMUST00000068747.7|Celf1|ENSMUSG00000005506.10|CUGBP, Elav-like family member 1
mm10_v2_chr16_-_94370994_94371019	0.181079	Arnt	ENSMUST00000113914.1|Pigp|ENSMUSG00000022940.10|phosphatidylinositol glycan anchor biosynthesis, class P 	ENSMUST00000113905.1|Pigp|ENSMUSG00000022940.10|phosphatidylinositol glycan anchor biosynthesis, class P
mm10_v2_chr16_-_4789887_4789949	0.158632	Arnt	ENSMUST00000117713.1|Cdip1|ENSMUSG00000004071.6|cell death inducing Trp53 target 1
mm10_v2_chr17_-_56626872_56626903	0.15701	Arnt	ENSMUST00000047226.8|Lonp1|ENSMUSG00000041168.9|lon peptidase 1, mitochondrial
mm10_v2_chr2_+_162931520_162931536	0.156979	Arnt	ENSMUST00000130411.1|Srsf6|ENSMUSG00000016921.8|serine/arginine-rich splicing factor 6
mm10_v2_chr16_-_4789984_4789995	0.15224	Arnt	ENSMUST00000004173.5|Cdip1|ENSMUSG00000004071.6|cell death inducing Trp53 target 1
mm10_v2_chr1_-_75505641_75505703	0.151337	Arnt	ENSMUST00000155084.1|Obsl1|ENSMUSG00000026211.11|obscurin-like 1
mm10_v2_chr2_+_164833781_164833815	0.147432	Arnt	ENSMUST00000143780.1|Ctsa|ENSMUSG00000017760.9|cathepsin A
mm10_v2_chr9_-_75409951_75410039	0.146685	Arnt	ENSMUST00000049355.10|Mapk6|ENSMUSG00000042688.10|mitogen-activated protein kinase 6
mm10_v2_chrX_-_101222426_101222563	0.144407	Arnt	ENSMUST00000120389.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000156473.1|Snx12|ENSMUSG00000046032.10|sorting nexin 12 	ENSMUST00000077876.3|Snx12|ENSMUSG00000046032.10|sorting nexin 12
mm10_v2_chrX_-_12160355_12160479	0.132261	Arnt	ENSMUST00000043441.6|Bcor|ENSMUSG00000040363.8|BCL6 interacting corepressor
mm10_v2_chr7_-_27166732_27166802	0.130886	Arnt	ENSMUST00000080058.4|Egln2|ENSMUSG00000058709.5|EGL nine homolog 2 (C. elegans)
mm10_v2_chr17_+_53479212_53479237	0.128943	Arnt	ENSMUST00000017975.5|Rab5a|ENSMUSG00000017831.7|RAB5A, member RAS oncogene family
mm10_v2_chr5_-_72168142_72168199	0.128689	Arnt	ENSMUST00000013693.6|Commd8|ENSMUSG00000029213.7|COMM domain containing 8
mm10_v2_chr11_-_102316691_102316708	0.126496	Arnt	ENSMUST00000107115.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000128016.1|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr9_-_35558522_35558548	0.119989	Arnt	ENSMUST00000034612.5|Ddx25|ENSMUSG00000032101.5|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
mm10_v2_chr19_+_43440404_43440447	0.118391	Arnt	ENSMUST00000165311.1|Cnnm1|ENSMUSG00000025189.8|cyclin M1
mm10_v2_chr11_-_60913775_60913816	0.11667	Arnt	ENSMUST00000019075.3|Gm16515|ENSMUSG00000018931.3|predicted gene, Gm16515
mm10_v2_chr2_+_158028733_158028821	0.115407	Arnt	ENSMUST00000152452.1|Rprd1b|ENSMUSG00000027651.10|regulation of nuclear pre-mRNA domain containing 1B
mm10_v2_chr11_+_74898078_74898106	0.111462	Arnt	ENSMUST00000045807.7|Tsr1|ENSMUSG00000038335.7|TSR1 20S rRNA accumulation
mm10_v2_chr6_+_85451488_85451505	0.106651	Arnt	ENSMUST00000032078.6|Cct7|ENSMUSG00000030007.6|chaperonin containing Tcp1, subunit 7 (eta)
mm10_v2_chr1_+_23762003_23762018	0.106618	Arnt	ENSMUST00000140583.1|B3gat2|ENSMUSG00000026156.8|beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)
mm10_v2_chr11_+_69991061_69991143	0.106238	Arnt	ENSMUST00000018711.8|Gabarap|ENSMUSG00000018567.8|gamma-aminobutyric acid receptor associated protein
mm10_v2_chr4_-_129742275_129742312	0.105796	Arnt	ENSMUST00000066257.5|Khdrbs1|ENSMUSG00000028790.7|KH domain containing, RNA binding, signal transduction associated 1
mm10_v2_chr2_+_84826997_84827067	0.101257	Arnt	ENSMUST00000028470.3|Timm10|ENSMUSG00000027076.4|translocase of inner mitochondrial membrane 10
mm10_v2_chr17_+_45563928_45563973	0.0990535	Arnt	ENSMUST00000041353.6|Slc35b2|ENSMUSG00000037089.9|solute carrier family 35, member B2
mm10_v2_chr17_-_27820445_27820491	0.0969483	Arnt	ENSMUST00000114859.1|D17Wsu92e|ENSMUSG00000056692.6|DNA segment, Chr 17, Wayne State University 92, expressed
mm10_v2_chr18_+_32837225_32837240	0.0954846	Arnt	ENSMUST00000166214.1|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36 	ENSMUST00000053663.9|Wdr36|ENSMUSG00000038299.9|WD repeat domain 36
mm10_v2_chr11_+_101087277_101087323	0.0943233	Arnt	ENSMUST00000107302.1|Mlx|ENSMUSG00000017801.9|MAX-like protein X 	ENSMUST00000107303.3|Mlx|ENSMUSG00000017801.9|MAX-like protein X 	ENSMUST00000017945.8|Mlx|ENSMUSG00000017801.9|MAX-like protein X 	ENSMUST00000149597.1|Mlx|ENSMUSG00000017801.9|MAX-like protein X
mm10_v2_chr11_+_60417238_60417301	0.0891326	Arnt	ENSMUST00000070681.6|Gid4|ENSMUSG00000018415.8|GID complex subunit 4, VID24 homolog (S. cerevisiae)
mm10_v2_chr10_+_36974536_36974556	0.0858161	Arnt	ENSMUST00000019911.7|Hdac2|ENSMUSG00000019777.10|histone deacetylase 2
mm10_v2_chr12_-_85374696_85374719	0.0851826	Arnt	ENSMUST00000040766.7|Tmed10|ENSMUSG00000021248.8|transmembrane emp24-like trafficking protein 10 (yeast)
mm10_v2_chr2_-_37703275_37703290	0.0806843	Arnt	ENSMUST00000072186.5|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr2_+_129198757_129198769	0.0783987	Arnt	ENSMUST00000028880.3|Slc20a1|ENSMUSG00000027397.8|solute carrier family 20, member 1
mm10_v2_chr11_+_95666957_95667064	0.0761862	Arnt	ENSMUST00000125172.1|Phb|ENSMUSG00000038845.5|prohibitin 	ENSMUST00000036374.5|Phb|ENSMUSG00000038845.5|prohibitin
mm10_v2_chr13_-_54687644_54687688	0.0759579	Arnt	ENSMUST00000129881.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr16_+_32608973_32608990	0.0658826	Arnt	ENSMUST00000120680.1|Tfrc|ENSMUSG00000022797.9|transferrin receptor
mm10_v2_chr2_+_164833841_164833858	0.0628605	Arnt	ENSMUST00000152721.1|Ctsa|ENSMUSG00000017760.9|cathepsin A
mm10_v2_chr11_-_102316660_102316680	0.0540423	Arnt	ENSMUST00000146896.2|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I 	ENSMUST00000079589.4|Ubtf|ENSMUSG00000020923.11|upstream binding transcription factor, RNA polymerase I
mm10_v2_chr17_+_35979851_35979924	0.0520888	Arnt	ENSMUST00000087200.3|Gnl1|ENSMUSG00000024429.9|guanine nucleotide binding protein-like 1
mm10_v2_chr1_-_75142360_75142424	0.0514282	Arnt	ENSMUST00000041213.5|Cnppd1|ENSMUSG00000033159.8|cyclin Pas1/PHO80 domain containing 1
mm10_v2_chr16_+_5050012_5050122	0.0443582	Arnt	ENSMUST00000052449.5|Ubn1|ENSMUSG00000039473.7|ubinuclein 1
mm10_v2_chr17_-_35980197_35980236	0.0425584	Arnt	ENSMUST00000055454.7|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr9_-_58202281_58202295	0.0354984	Arnt	ENSMUST00000163897.1|Islr2|ENSMUSG00000051243.7|immunoglobulin superfamily containing leucine-rich repeat 2
mm10_v2_chr9_-_113708209_113708259	0.0315424	Arnt	ENSMUST00000111861.3|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein 	ENSMUST00000035086.6|Pdcd6ip|ENSMUSG00000032504.9|programmed cell death 6 interacting protein
mm10_v2_chr1_-_75180349_75180407	0.028512	Arnt	ENSMUST00000027396.8|Abcb6|ENSMUSG00000026198.9|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm10_v2_chr2_-_178414460_178414507	0.018467	Arnt	ENSMUST00000058678.4|Ppp1r3d|ENSMUSG00000049999.4|protein phosphatase 1, regulatory subunit 3D
mm10_v2_chr11_-_86757483_86757572	0.015269	Arnt	ENSMUST00000060766.9|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc) 	ENSMUST00000103186.4|Cltc|ENSMUSG00000047126.11|clathrin, heavy polypeptide (Hc)
mm10_v2_chr7_-_16286744_16286795	0.0117075	Arnt	ENSMUST00000150528.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000118976.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000146609.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9
mm10_v2_chr11_-_120617887_120617941	0.011063	Arnt	ENSMUST00000106188.3|Pcyt2|ENSMUSG00000025137.9|phosphate cytidylyltransferase 2, ethanolamine 	ENSMUST00000026129.9|Pcyt2|ENSMUSG00000025137.9|phosphate cytidylyltransferase 2, ethanolamine
mm10_v2_chr11_-_84129582_84129620	0.00928725	Arnt	ENSMUST00000018795.6|Tada2a|ENSMUSG00000018651.8|transcriptional adaptor 2A
mm10_v2_chr17_-_79896028_79896123	0.00737441	Arnt	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr14_-_55635602_55635718	0.00622955	Arnt	ENSMUST00000047131.9|Ipo4|ENSMUSG00000002319.9|importin 4
mm10_v2_chr13_-_54688184_54688211	0.00491542	Arnt	ENSMUST00000150806.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44 	ENSMUST00000125927.1|Rnf44|ENSMUSG00000034928.10|ring finger protein 44
mm10_v2_chr17_+_33940660_33940709	0.004069	Arnt	ENSMUST00000025170.9|Wdr46|ENSMUSG00000024312.9|WD repeat domain 46
mm10_v2_chr11_-_98438941_98439008	0.00170346	Arnt	ENSMUST00000002655.7|Mien1|ENSMUSG00000002580.7|migration and invasion enhancer 1
mm10_v2_chr1_-_55088156_55088243	0.000260515	Arnt	ENSMUST00000127861.1|Hspd1|ENSMUSG00000025980.8|heat shock protein 1 (chaperonin) 	ENSMUST00000144077.1|Hspd1|ENSMUSG00000025980.8|heat shock protein 1 (chaperonin)
