mm10_v2_chr18_-_84086379_84086404	25.5857	Foxa2_Foxa1	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr17_-_70851710_70851738	25.0598	Foxa2_Foxa1	ENSMUST00000166395.2|Tgif1|ENSMUSG00000047407.11|TGFB-induced factor homeobox 1
mm10_v2_chr14_+_73237891_73238007	24.988	Foxa2_Foxa1	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr13_-_60177357_60177373	21.4611	Foxa2_Foxa1	ENSMUST00000065086.4|Gas1|ENSMUSG00000052957.7|growth arrest specific 1
mm10_v2_chr4_-_58499398_58499409	21.3253	Foxa2_Foxa1	ENSMUST00000107570.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr2_+_25180737_25180764	19.9811	Foxa2_Foxa1	ENSMUST00000104999.2|Nrarp|ENSMUSG00000078202.2|Notch-regulated ankyrin repeat protein
mm10_v2_chr1_-_138619687_138619759	15.8944	Foxa2_Foxa1	ENSMUST00000027642.2|Nek7|ENSMUSG00000026393.4|NIMA (never in mitosis gene a)-related expressed kinase 7
mm10_v2_chr12_-_99883429_99883460	14.5153	Foxa2_Foxa1	ENSMUST00000046485.3|Efcab11|ENSMUSG00000021176.5|EF-hand calcium binding domain 11
mm10_v2_chr18_-_62756275_62756347	14.2813	Foxa2_Foxa1	ENSMUST00000067450.1|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene 	ENSMUST00000048109.5|2700046A07Rik|ENSMUSG00000041789.6|RIKEN cDNA 2700046A07 gene
mm10_v2_chr14_+_13454010_13454123	13.9636	Foxa2_Foxa1	ENSMUST00000112656.2|Synpr|ENSMUSG00000056296.10|synaptoporin
mm10_v2_chr4_+_11191726_11191789	13.7842	Foxa2_Foxa1	ENSMUST00000029866.9|Ccne2|ENSMUSG00000028212.10|cyclin E2 	ENSMUST00000108324.3|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr10_-_93311073_93311161	13.7081	Foxa2_Foxa1	ENSMUST00000008542.5|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr14_-_48662740_48662872	13.3075	Foxa2_Foxa1	ENSMUST00000122009.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr7_+_67655414_67655447	13.2059	Foxa2_Foxa1	ENSMUST00000107470.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr10_-_93310963_93310989	12.5678	Foxa2_Foxa1	ENSMUST00000151153.1|Elk3|ENSMUSG00000008398.8|ELK3, member of ETS oncogene family
mm10_v2_chr17_+_29090969_29091020	12.3751	Foxa2_Foxa1	ENSMUST00000119901.1|Cdkn1a|ENSMUSG00000023067.7|cyclin-dependent kinase inhibitor 1A (P21)
mm10_v2_chr2_+_181767283_181767322	12.1748	Foxa2_Foxa1	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr2_+_181767040_181767073	12.1413	Foxa2_Foxa1	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr12_-_56535047_56535106	12.1062	Foxa2_Foxa1	ENSMUST00000178477.2|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr10_-_128180265_128180307	11.4909	Foxa2_Foxa1	ENSMUST00000099139.1|Rbms2|ENSMUSG00000040043.9|RNA binding motif, single stranded interacting protein 2
mm10_v2_chr4_-_82885148_82885148	11.0738	Foxa2_Foxa1	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr6_+_14901344_14901364	11.0485	Foxa2_Foxa1	ENSMUST00000115477.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr6_+_5390387_5390427	10.8545	Foxa2_Foxa1	ENSMUST00000183358.1|Asb4|ENSMUSG00000042607.9|ankyrin repeat and SOCS box-containing 4
mm10_v2_chr6_+_8948608_8948619	10.8269	Foxa2_Foxa1	ENSMUST00000160300.1|Nxph1|ENSMUSG00000046178.3|neurexophilin 1
mm10_v2_chr6_+_34709442_34709497	10.4491	Foxa2_Foxa1	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr8_+_127064022_127064086	10.2845	Foxa2_Foxa1	ENSMUST00000160272.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000079777.5|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans) 	ENSMUST00000162907.1|Pard3|ENSMUSG00000025812.11|par-3 (partitioning defective 3) homolog (C. elegans)
mm10_v2_chr8_+_45628176_45628219	9.69178	Foxa2_Foxa1	ENSMUST00000130850.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr4_+_11191354_11191424	9.5816	Foxa2_Foxa1	ENSMUST00000170901.1|Ccne2|ENSMUSG00000028212.10|cyclin E2
mm10_v2_chr3_-_101836223_101836237	9.51922	Foxa2_Foxa1	ENSMUST00000061831.4|Mab21l3|ENSMUSG00000044313.7|mab-21-like 3 (C. elegans)
mm10_v2_chr19_+_37376359_37376422	9.15527	Foxa2_Foxa1	ENSMUST00000012587.3|Kif11|ENSMUSG00000012443.3|kinesin family member 11
mm10_v2_chr6_+_34709610_34709635	8.92978	Foxa2_Foxa1	ENSMUST00000031775.6|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr2_-_172940299_172940349	8.49547	Foxa2_Foxa1	ENSMUST00000009143.7|Bmp7|ENSMUSG00000008999.7|bone morphogenetic protein 7
mm10_v2_chr4_+_97777606_97777632	8.35384	Foxa2_Foxa1	ENSMUST00000075448.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000092532.6|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr12_+_71016658_71016708	8.20486	Foxa2_Foxa1	ENSMUST00000125125.1|Arid4a|ENSMUSG00000048118.11|AT rich interactive domain 4A (RBP1-like)
mm10_v2_chr6_-_3494587_3494598	8.03881	Foxa2_Foxa1	ENSMUST00000049985.8|Hepacam2|ENSMUSG00000044156.8|HEPACAM family member 2
mm10_v2_chr1_-_156034826_156034880	7.95718	Foxa2_Foxa1	ENSMUST00000141878.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1 	ENSMUST00000123705.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr2_+_26973416_26973505	7.94732	Foxa2_Foxa1	ENSMUST00000014996.7|Adamts13|ENSMUSG00000014852.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 	ENSMUST00000102891.3|Adamts13|ENSMUSG00000014852.10|a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13
mm10_v2_chr8_+_45658666_45658728	7.60643	Foxa2_Foxa1	ENSMUST00000134675.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000139869.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000126067.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr10_+_88091070_88091076	7.46821	Foxa2_Foxa1	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr9_+_78615501_78615546	7.43023	Foxa2_Foxa1	ENSMUST00000093812.4|Cd109|ENSMUSG00000046186.8|CD109 antigen
mm10_v2_chr14_+_13453937_13453958	7.22265	Foxa2_Foxa1	ENSMUST00000153954.1|Synpr|ENSMUSG00000056296.10|synaptoporin
mm10_v2_chr2_+_14873656_14873820	7.1542	Foxa2_Foxa1	ENSMUST00000114718.1|Cacnb2|ENSMUSG00000057914.9|calcium channel, voltage-dependent, beta 2 subunit 	ENSMUST00000114719.1|Cacnb2|ENSMUSG00000057914.9|calcium channel, voltage-dependent, beta 2 subunit
mm10_v2_chr1_-_97977233_97977279	7.1374	Foxa2_Foxa1	ENSMUST00000161567.1|Pam|ENSMUSG00000026335.10|peptidylglycine alpha-amidating monooxygenase
mm10_v2_chr15_-_84855093_84855127	7.12113	Foxa2_Foxa1	ENSMUST00000016768.5|Phf21b|ENSMUSG00000016624.9|PHD finger protein 21B
mm10_v2_chr8_+_45658731_45658804	7.0947	Foxa2_Foxa1	ENSMUST00000143820.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2 	ENSMUST00000132139.1|Sorbs2|ENSMUSG00000031626.10|sorbin and SH3 domain containing 2
mm10_v2_chr13_-_83729544_83729584	7.05567	Foxa2_Foxa1	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr17_+_85613432_85613608	7.04719	Foxa2_Foxa1	ENSMUST00000176081.1|Six3|ENSMUSG00000038805.9|sine oculis-related homeobox 3
mm10_v2_chr1_+_156838915_156838978	6.8389	Foxa2_Foxa1	ENSMUST00000111720.1|Angptl1|ENSMUSG00000033544.6|angiopoietin-like 1
mm10_v2_chr11_-_68386821_68386835	6.6965	Foxa2_Foxa1	ENSMUST00000021284.3|Ntn1|ENSMUSG00000020902.6|netrin 1
mm10_v2_chr18_-_60501983_60501983	6.57602	Foxa2_Foxa1	ENSMUST00000042710.6|Smim3|ENSMUSG00000038059.6|small integral membrane protein 3
mm10_v2_chrX_+_106920618_106920632	6.52801	Foxa2_Foxa1	ENSMUST00000060576.7|Lpar4|ENSMUSG00000049929.7|lysophosphatidic acid receptor 4
mm10_v2_chr5_+_92809372_92809436	6.37547	Foxa2_Foxa1	ENSMUST00000113054.2|Shroom3|ENSMUSG00000029381.9|shroom family member 3
mm10_v2_chr2_-_51972990_51973022	6.34082	Foxa2_Foxa1	ENSMUST00000145481.1|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor 	ENSMUST00000112705.2|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor
mm10_v2_chr19_+_55741810_55741842	6.29311	Foxa2_Foxa1	ENSMUST00000111657.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000061496.9|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000041717.7|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111662.4|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr4_+_98546710_98546739	6.22894	Foxa2_Foxa1	ENSMUST00000102792.3|Inadl|ENSMUSG00000061859.10|InaD-like (Drosophila)
mm10_v2_chr3_-_52104891_52104922	6.14237	Foxa2_Foxa1	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr4_+_98546919_98546973	6.02273	Foxa2_Foxa1	ENSMUST00000030290.7|Inadl|ENSMUSG00000061859.10|InaD-like (Drosophila)
mm10_v2_chr10_-_49783259_49783582	5.93145	Foxa2_Foxa1	ENSMUST00000105484.3|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105486.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000079751.2|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2) 	ENSMUST00000105485.1|Grik2|ENSMUSG00000056073.8|glutamate receptor, ionotropic, kainate 2 (beta 2)
mm10_v2_chr2_-_113848655_113848744	5.82173	Foxa2_Foxa1	ENSMUST00000102545.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A 	ENSMUST00000110948.1|Arhgap11a|ENSMUSG00000041219.8|Rho GTPase activating protein 11A
mm10_v2_chr2_+_52072823_52072854	5.76438	Foxa2_Foxa1	ENSMUST00000112693.2|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast) 	ENSMUST00000069794.5|Rif1|ENSMUSG00000036202.9|Rap1 interacting factor 1 homolog (yeast)
mm10_v2_chr14_+_46832127_46832151	5.7474	Foxa2_Foxa1	ENSMUST00000068532.8|Cgrrf1|ENSMUSG00000055128.8|cell growth regulator with ring finger domain 1
mm10_v2_chr9_+_74848437_74848531	5.51661	Foxa2_Foxa1	ENSMUST00000161862.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551 	ENSMUST00000160950.1|Gm20649|ENSMUSG00000093662.1|predicted gene 20649 	ENSMUST00000162089.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551 	ENSMUST00000160017.1|Gm16551|ENSMUSG00000066477.7|predicted gene 16551
mm10_v2_chr2_+_73271925_73271939	5.5076	Foxa2_Foxa1	ENSMUST00000090813.5|Sp9|ENSMUSG00000068859.5|trans-acting transcription factor 9
mm10_v2_chr3_-_145649970_145649992	5.48597	Foxa2_Foxa1	ENSMUST00000029846.3|Cyr61|ENSMUSG00000028195.3|cysteine rich protein 61
mm10_v2_chr6_+_15185203_15185244	5.47982	Foxa2_Foxa1	ENSMUST00000154448.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr4_-_24430838_24430890	5.34263	Foxa2_Foxa1	ENSMUST00000183964.1|RP23-35K5.2|ENSMUSG00000099150.1|RP23-35K5.2
mm10_v2_chr2_-_104742802_104742878	5.1585	Foxa2_Foxa1	ENSMUST00000028595.7|Depdc7|ENSMUSG00000027173.7|DEP domain containing 7
mm10_v2_chr18_-_47333311_47333373	5.15552	Foxa2_Foxa1	ENSMUST00000126684.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000156422.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr11_-_48826500_48826500	5.13384	Foxa2_Foxa1	ENSMUST00000161192.2|Gm12184|ENSMUSG00000078154.2|predicted gene 12184
mm10_v2_chr10_+_111506286_111506286	5.11704	Foxa2_Foxa1	ENSMUST00000164773.1|Phlda1|ENSMUSG00000020205.7|pleckstrin homology-like domain, family A, member 1
mm10_v2_chr7_+_29071597_29071613	4.99022	Foxa2_Foxa1	ENSMUST00000180926.1|Gm26604|ENSMUSG00000097079.1|predicted gene, 26604
mm10_v2_chr12_-_31950170_31950197	4.97195	Foxa2_Foxa1	ENSMUST00000176520.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr2_-_70825726_70825820	4.88738	Foxa2_Foxa1	ENSMUST00000038584.8|Tlk1|ENSMUSG00000041997.10|tousled-like kinase 1
mm10_v2_chr12_-_73113407_73113456	4.85776	Foxa2_Foxa1	ENSMUST00000175693.1|Six4|ENSMUSG00000034460.8|sine oculis-related homeobox 4
mm10_v2_chr11_-_48826655_48826655	4.76917	Foxa2_Foxa1	ENSMUST00000104959.1|Gm12184|ENSMUSG00000078154.2|predicted gene 12184
mm10_v2_chr3_+_131112785_131112803	4.7611	Foxa2_Foxa1	ENSMUST00000098611.3|Lef1|ENSMUSG00000027985.8|lymphoid enhancer binding factor 1
mm10_v2_chr2_-_51973219_51973234	4.73756	Foxa2_Foxa1	ENSMUST00000028314.2|Nmi|ENSMUSG00000026946.3|N-myc (and STAT) interactor
mm10_v2_chr15_-_55548164_55548164	4.69163	Foxa2_Foxa1	ENSMUST00000165356.1|Mrpl13|ENSMUSG00000022370.7|mitochondrial ribosomal protein L13
mm10_v2_chr12_-_31950210_31950246	4.65611	Foxa2_Foxa1	ENSMUST00000176084.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000176103.1|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1 	ENSMUST00000167458.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr7_-_132813799_132813905	4.52878	Foxa2_Foxa1	ENSMUST00000097998.2|Fam53b|ENSMUSG00000030956.9|family with sequence similarity 53, member B
mm10_v2_chr18_-_88927447_88927481	4.51665	Foxa2_Foxa1	ENSMUST00000147313.1|Socs6|ENSMUSG00000056153.8|suppressor of cytokine signaling 6
mm10_v2_chr6_-_23248264_23248390	4.49417	Foxa2_Foxa1	ENSMUST00000031709.5|Fezf1|ENSMUSG00000029697.5|Fez family zinc finger 1
mm10_v2_chr4_+_11579647_11579674	4.39079	Foxa2_Foxa1	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr2_-_62483637_62483653	4.38815	Foxa2_Foxa1	ENSMUST00000136686.1|Gcg|ENSMUSG00000000394.9|glucagon 	ENSMUST00000102733.3|Gcg|ENSMUSG00000000394.9|glucagon
mm10_v2_chr7_-_37773555_37773641	4.26156	Foxa2_Foxa1	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr1_+_12718496_12718545	4.23502	Foxa2_Foxa1	ENSMUST00000088585.3|Sulf1|ENSMUSG00000016918.9|sulfatase 1
mm10_v2_chr2_-_18048784_18048822	4.219	Foxa2_Foxa1	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr10_-_13388753_13388774	4.05148	Foxa2_Foxa1	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr3_-_46447939_46447980	4.03592	Foxa2_Foxa1	ENSMUST00000166505.1|Pabpc4l|ENSMUSG00000090919.1|poly(A) binding protein, cytoplasmic 4-like
mm10_v2_chr1_-_156034800_156034817	4.00237	Foxa2_Foxa1	ENSMUST00000169241.1|Tor1aip1|ENSMUSG00000026466.10|torsin A interacting protein 1
mm10_v2_chr10_+_128909866_128909873	3.96356	Foxa2_Foxa1	ENSMUST00000026407.7|Cd63|ENSMUSG00000025351.7|CD63 antigen
mm10_v2_chr13_-_74807913_74807989	3.87029	Foxa2_Foxa1	ENSMUST00000065629.4|Cast|ENSMUSG00000021585.8|calpastatin
mm10_v2_chr2_-_168601620_168601657	3.86763	Foxa2_Foxa1	ENSMUST00000171689.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 	ENSMUST00000137451.1|Nfatc2|ENSMUSG00000027544.10|nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
mm10_v2_chr2_+_110597298_110597316	3.84904	Foxa2_Foxa1	ENSMUST00000045972.6|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12 	ENSMUST00000111026.2|Slc5a12|ENSMUSG00000041644.8|solute carrier family 5 (sodium/glucose cotransporter), member 12
mm10_v2_chr2_-_154569720_154569799	3.77553	Foxa2_Foxa1	ENSMUST00000000894.5|E2f1|ENSMUSG00000027490.11|E2F transcription factor 1
mm10_v2_chr4_-_55532453_55532485	3.77534	Foxa2_Foxa1	ENSMUST00000132746.1|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut) 	ENSMUST00000107619.2|Klf4|ENSMUSG00000003032.8|Kruppel-like factor 4 (gut)
mm10_v2_chr3_+_5218546_5218561	3.73677	Foxa2_Foxa1	ENSMUST00000026284.6|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr14_-_101609033_101609191	3.73587	Foxa2_Foxa1	ENSMUST00000161991.1|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4 	ENSMUST00000100340.3|Tbc1d4|ENSMUSG00000033083.10|TBC1 domain family, member 4
mm10_v2_chrX_+_96455359_96455411	3.73152	Foxa2_Foxa1	ENSMUST00000033553.7|Heph|ENSMUSG00000031209.8|hephaestin
mm10_v2_chr7_-_109960385_109960433	3.7304	Foxa2_Foxa1	ENSMUST00000106722.1|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr12_-_56536895_56536937	3.70401	Foxa2_Foxa1	ENSMUST00000001536.8|Nkx2-1|ENSMUSG00000001496.9|NK2 homeobox 1
mm10_v2_chr15_-_50890396_50890463	3.70057	Foxa2_Foxa1	ENSMUST00000185183.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr7_-_109960461_109960477	3.63034	Foxa2_Foxa1	ENSMUST00000080437.6|Dennd5a|ENSMUSG00000035901.8|DENN/MADD domain containing 5A
mm10_v2_chr11_-_49712674_49712726	3.6246	Foxa2_Foxa1	ENSMUST00000020624.6|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6 	ENSMUST00000145353.1|Cnot6|ENSMUSG00000020362.7|CCR4-NOT transcription complex, subunit 6
mm10_v2_chr6_+_92940572_92940592	3.59172	Foxa2_Foxa1	ENSMUST00000181145.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene 	ENSMUST00000181840.1|9530026P05Rik|ENSMUSG00000097462.1|RIKEN cDNA 9530026P05 gene
mm10_v2_chr13_+_23531044_23531088	3.57208	Foxa2_Foxa1	ENSMUST00000102972.3|Hist1h4h|ENSMUSG00000060981.5|histone cluster 1, H4h
mm10_v2_chr14_+_55853997_55854036	3.54932	Foxa2_Foxa1	ENSMUST00000100529.3|Nynrin|ENSMUSG00000075592.3|NYN domain and retroviral integrase containing
mm10_v2_chr19_-_58455398_58455458	3.51254	Foxa2_Foxa1	ENSMUST00000026076.7|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr14_+_55854115_55854206	3.51241	Foxa2_Foxa1	ENSMUST00000168479.1|Nynrin|ENSMUSG00000075592.3|NYN domain and retroviral integrase containing
mm10_v2_chr4_+_140701466_140701509	3.5059	Foxa2_Foxa1	ENSMUST00000038893.5|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2 	ENSMUST00000138808.1|Rcc2|ENSMUSG00000040945.7|regulator of chromosome condensation 2
mm10_v2_chr2_-_154569845_154569892	3.46748	Foxa2_Foxa1	ENSMUST00000103145.4|E2f1|ENSMUSG00000027490.11|E2F transcription factor 1
mm10_v2_chr19_+_55741884_55741919	3.41007	Foxa2_Foxa1	ENSMUST00000111658.3|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box 	ENSMUST00000111654.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr2_-_170427828_170427852	3.28328	Foxa2_Foxa1	ENSMUST00000013667.2|Bcas1|ENSMUSG00000013523.7|breast carcinoma amplified sequence 1 	ENSMUST00000109152.2|Bcas1|ENSMUSG00000013523.7|breast carcinoma amplified sequence 1 	ENSMUST00000068137.4|Bcas1|ENSMUSG00000013523.7|breast carcinoma amplified sequence 1
mm10_v2_chr8_-_122699066_122699119	3.26957	Foxa2_Foxa1	ENSMUST00000127984.1|Cbfa2t3|ENSMUSG00000006362.9|core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
mm10_v2_chr10_+_128908907_128908925	3.23721	Foxa2_Foxa1	ENSMUST00000105229.1|Cd63|ENSMUSG00000025351.7|CD63 antigen
mm10_v2_chr19_-_58455903_58455914	3.20935	Foxa2_Foxa1	ENSMUST00000131877.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr12_+_76370266_76370266	3.18608	Foxa2_Foxa1	ENSMUST00000042779.3|Zbtb1|ENSMUSG00000033454.6|zinc finger and BTB domain containing 1
mm10_v2_chr10_-_13388830_13388970	3.13337	Foxa2_Foxa1	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr12_+_38781093_38781129	3.11442	Foxa2_Foxa1	ENSMUST00000161513.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr7_-_65371210_65371287	3.03447	Foxa2_Foxa1	ENSMUST00000102592.3|Tjp1|ENSMUSG00000030516.8|tight junction protein 1
mm10_v2_chr9_-_107668967_107668995	2.95545	Foxa2_Foxa1	ENSMUST00000177567.1|Slc38a3|ENSMUSG00000010064.9|solute carrier family 38, member 3
mm10_v2_chr11_-_68386974_68387012	2.9404	Foxa2_Foxa1	ENSMUST00000135141.1|Ntn1|ENSMUSG00000020902.6|netrin 1
mm10_v2_chr12_-_31950535_31950560	2.86839	Foxa2_Foxa1	ENSMUST00000172314.2|Hbp1|ENSMUSG00000002996.11|high mobility group box transcription factor 1
mm10_v2_chr2_-_18048347_18048449	2.86692	Foxa2_Foxa1	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr19_+_55742056_55742066	2.83528	Foxa2_Foxa1	ENSMUST00000111659.2|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr8_-_31918203_31918368	2.82296	Foxa2_Foxa1	ENSMUST00000073884.4|Nrg1|ENSMUSG00000062991.6|neuregulin 1
mm10_v2_chr5_-_138170992_138171033	2.80687	Foxa2_Foxa1	ENSMUST00000139983.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr16_-_22161450_22161450	2.77917	Foxa2_Foxa1	ENSMUST00000115379.1|Igf2bp2|ENSMUSG00000033581.10|insulin-like growth factor 2 mRNA binding protein 2
mm10_v2_chr19_-_58455161_58455324	2.6843	Foxa2_Foxa1	ENSMUST00000135730.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1 	ENSMUST00000152507.1|Gfra1|ENSMUSG00000025089.9|glial cell line derived neurotrophic factor family receptor alpha 1
mm10_v2_chr6_+_147032528_147032547	2.67857	Foxa2_Foxa1	ENSMUST00000036194.4|Rep15|ENSMUSG00000040121.4|RAB15 effector protein
mm10_v2_chr18_-_6136057_6136098	2.66739	Foxa2_Foxa1	ENSMUST00000182559.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12
mm10_v2_chr3_+_76075583_76075583	2.64529	Foxa2_Foxa1	ENSMUST00000160261.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr5_-_51567717_51567732	2.62708	Foxa2_Foxa1	ENSMUST00000127135.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha 	ENSMUST00000151104.1|Ppargc1a|ENSMUSG00000029167.7|peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
mm10_v2_chr5_-_149051604_149051624	2.55278	Foxa2_Foxa1	ENSMUST00000093196.4|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr1_-_183147461_183147461	2.50289	Foxa2_Foxa1	ENSMUST00000171366.1|Disp1|ENSMUSG00000030768.6|dispatched homolog 1 (Drosophila)
mm10_v2_chr15_-_50882806_50882822	2.49615	Foxa2_Foxa1	ENSMUST00000184885.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chr6_+_14901440_14901497	2.48206	Foxa2_Foxa1	ENSMUST00000128567.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr12_+_38780817_38780854	2.47776	Foxa2_Foxa1	ENSMUST00000160856.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr17_+_28858411_28858499	2.45978	Foxa2_Foxa1	ENSMUST00000114737.1|Pnpla1|ENSMUSG00000043286.5|patatin-like phospholipase domain containing 1 	ENSMUST00000056866.5|Pnpla1|ENSMUSG00000043286.5|patatin-like phospholipase domain containing 1
mm10_v2_chr3_+_5218516_5218544	2.45382	Foxa2_Foxa1	ENSMUST00000175866.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr5_-_138171248_138171274	2.41374	Foxa2_Foxa1	ENSMUST00000153867.1|Mcm7|ENSMUSG00000029730.10|minichromosome maintenance deficient 7 (S. cerevisiae)
mm10_v2_chr19_+_5041337_5041416	2.40877	Foxa2_Foxa1	ENSMUST00000116567.2|Brms1|ENSMUSG00000080268.3|breast cancer metastasis-suppressor 1
mm10_v2_chr10_-_21160925_21160984	2.38656	Foxa2_Foxa1	ENSMUST00000020158.6|Myb|ENSMUSG00000019982.8|myeloblastosis oncogene
mm10_v2_chr18_+_4920509_4920586	2.37538	Foxa2_Foxa1	ENSMUST00000126977.1|Svil|ENSMUSG00000024236.11|supervillin
mm10_v2_chrX_-_108834303_108834381	2.34991	Foxa2_Foxa1	ENSMUST00000101283.3|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3 	ENSMUST00000150434.1|Brwd3|ENSMUSG00000063663.5|bromodomain and WD repeat domain containing 3
mm10_v2_chr2_+_4718145_4718205	2.3004	Foxa2_Foxa1	ENSMUST00000056914.6|Bend7|ENSMUSG00000048186.8|BEN domain containing 7
mm10_v2_chr2_+_27676440_27676454	2.18942	Foxa2_Foxa1	ENSMUST00000129514.1|Rxra|ENSMUSG00000015846.8|retinoid X receptor alpha
mm10_v2_chr3_+_134236483_134236500	2.18939	Foxa2_Foxa1	ENSMUST00000181904.1|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4 	ENSMUST00000053048.9|Cxxc4|ENSMUSG00000044365.10|CXXC finger 4
mm10_v2_chr6_-_86765807_86765834	2.1785	Foxa2_Foxa1	ENSMUST00000123732.1|Anxa4|ENSMUSG00000029994.11|annexin A4
mm10_v2_chr4_+_118409331_118409401	2.13278	Foxa2_Foxa1	ENSMUST00000084319.4|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000106384.3|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000126089.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000073881.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000019229.8|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast) 	ENSMUST00000144577.1|Med8|ENSMUSG00000006392.10|mediator of RNA polymerase II transcription, subunit 8 homolog (yeast)
mm10_v2_chr4_+_97777780_97777834	2.04638	Foxa2_Foxa1	ENSMUST00000107062.2|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000052018.5|Nfia|ENSMUSG00000028565.12|nuclear factor I/A 	ENSMUST00000107057.1|Nfia|ENSMUSG00000028565.12|nuclear factor I/A
mm10_v2_chr13_+_44840686_44840697	2.03234	Foxa2_Foxa1	ENSMUST00000173906.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr10_+_96616998_96617015	2.02925	Foxa2_Foxa1	ENSMUST00000038377.7|Btg1|ENSMUSG00000036478.7|B cell translocation gene 1, anti-proliferative
mm10_v2_chr18_-_6135888_6135999	1.98692	Foxa2_Foxa1	ENSMUST00000182383.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000062584.7|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000077128.6|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000182038.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12 	ENSMUST00000182213.1|Arhgap12|ENSMUSG00000041225.10|Rho GTPase activating protein 12
mm10_v2_chr16_-_63864114_63864182	1.98527	Foxa2_Foxa1	ENSMUST00000064405.6|Epha3|ENSMUSG00000052504.6|Eph receptor A3
mm10_v2_chr13_+_8202885_8202918	1.98261	Foxa2_Foxa1	ENSMUST00000139438.1|Adarb2|ENSMUSG00000052551.9|adenosine deaminase, RNA-specific, B2 	ENSMUST00000135574.1|Adarb2|ENSMUSG00000052551.9|adenosine deaminase, RNA-specific, B2
mm10_v2_chrX_+_35888808_35888859	1.91429	Foxa2_Foxa1	ENSMUST00000033419.6|Dock11|ENSMUSG00000031093.8|dedicator of cytokinesis 11
mm10_v2_chr11_-_76027726_76027802	1.90748	Foxa2_Foxa1	ENSMUST00000021207.6|Fam101b|ENSMUSG00000020846.6|family with sequence similarity 101, member B
mm10_v2_chr16_+_20611585_20611635	1.8878	Foxa2_Foxa1	ENSMUST00000115522.2|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000119224.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000079600.4|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2 	ENSMUST00000120394.1|Ece2|ENSMUSG00000022842.10|endothelin converting enzyme 2
mm10_v2_chr18_-_7626809_7626880	1.87205	Foxa2_Foxa1	ENSMUST00000115869.2|Mpp7|ENSMUSG00000057440.7|membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)
mm10_v2_chr7_-_84679346_84679401	1.86766	Foxa2_Foxa1	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr2_+_164403194_164403219	1.85566	Foxa2_Foxa1	ENSMUST00000017151.1|Rbpjl|ENSMUSG00000017007.3|recombination signal binding protein for immunoglobulin kappa J region-like
mm10_v2_chr11_+_46235460_46235531	1.85469	Foxa2_Foxa1	ENSMUST00000060185.2|Fndc9|ENSMUSG00000048721.2|fibronectin type III domain containing 9
mm10_v2_chr3_+_5218589_5218614	1.84869	Foxa2_Foxa1	ENSMUST00000177488.1|Zfhx4|ENSMUSG00000025255.12|zinc finger homeodomain 4
mm10_v2_chr14_+_32599922_32599932	1.83674	Foxa2_Foxa1	ENSMUST00000068938.5|Prrxl1|ENSMUSG00000041730.7|paired related homeobox protein-like 1
mm10_v2_chr17_-_45474839_45474938	1.80876	Foxa2_Foxa1	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr13_+_113342548_113342548	1.76353	Foxa2_Foxa1	ENSMUST00000078163.7|BC067074|ENSMUSG00000021763.10|cDNA sequence BC067074
mm10_v2_chr9_+_14784638_14784658	1.76317	Foxa2_Foxa1	ENSMUST00000034405.4|Mre11a|ENSMUSG00000031928.8|meiotic recombination 11 homolog A (S. cerevisiae)
mm10_v2_chr12_+_38780284_38780349	1.75875	Foxa2_Foxa1	ENSMUST00000162563.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000161164.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160996.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr17_-_24163668_24163771	1.75636	Foxa2_Foxa1	ENSMUST00000040735.5|Amdhd2|ENSMUSG00000036820.5|amidohydrolase domain containing 2
mm10_v2_chrX_-_94123087_94123159	1.74738	Foxa2_Foxa1	ENSMUST00000113925.1|Zfx|ENSMUSG00000079509.4|zinc finger protein X-linked
mm10_v2_chr11_+_115824029_115824097	1.72566	Foxa2_Foxa1	ENSMUST00000103032.4|Llgl2|ENSMUSG00000020782.12|lethal giant larvae homolog 2 (Drosophila) 	ENSMUST00000133250.1|Llgl2|ENSMUSG00000020782.12|lethal giant larvae homolog 2 (Drosophila) 	ENSMUST00000177736.1|Llgl2|ENSMUSG00000020782.12|lethal giant larvae homolog 2 (Drosophila)
mm10_v2_chr16_-_36071515_36071604	1.71678	Foxa2_Foxa1	ENSMUST00000004057.7|Fam162a|ENSMUSG00000003955.7|family with sequence similarity 162, member A
mm10_v2_chr7_+_113766119_113766199	1.6912	Foxa2_Foxa1	ENSMUST00000084696.4|Spon1|ENSMUSG00000038156.9|spondin 1, (f-spondin) extracellular matrix protein
mm10_v2_chrX_+_56786527_56786564	1.68421	Foxa2_Foxa1	ENSMUST00000144600.1|Fhl1|ENSMUSG00000023092.10|four and a half LIM domains 1
mm10_v2_chr7_+_30565410_30565432	1.66907	Foxa2_Foxa1	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr7_-_133123409_133123472	1.66349	Foxa2_Foxa1	ENSMUST00000170459.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000166400.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr2_+_18064645_18064705	1.6493	Foxa2_Foxa1	ENSMUST00000114680.2|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr4_+_11123950_11123980	1.63755	Foxa2_Foxa1	ENSMUST00000142297.1|Gm11827|ENSMUSG00000086765.1|predicted gene 11827
mm10_v2_chrX_+_159303266_159303281	1.61349	Foxa2_Foxa1	ENSMUST00000112491.1|Rps6ka3|ENSMUSG00000031309.9|ribosomal protein S6 kinase polypeptide 3
mm10_v2_chr7_-_100656953_100657103	1.60403	Foxa2_Foxa1	ENSMUST00000107046.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000107045.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1 	ENSMUST00000139708.1|Plekhb1|ENSMUSG00000030701.10|pleckstrin homology domain containing, family B (evectins) member 1
mm10_v2_chr3_+_96219858_96219873	1.49156	Foxa2_Foxa1	ENSMUST00000073115.4|Hist2h2ab|ENSMUSG00000063689.4|histone cluster 2, H2ab
mm10_v2_chr9_-_83146601_83146614	1.48786	Foxa2_Foxa1	ENSMUST00000162246.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3 	ENSMUST00000161796.2|Hmgn3|ENSMUSG00000066456.8|high mobility group nucleosomal binding domain 3
mm10_v2_chr13_+_65512678_65512678	1.43383	Foxa2_Foxa1	ENSMUST00000081471.2|Gm10139|ENSMUSG00000063905.2|predicted gene 10139
mm10_v2_chr15_+_59648644_59648687	1.43245	Foxa2_Foxa1	ENSMUST00000118228.1|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr7_-_133123770_133123876	1.40071	Foxa2_Foxa1	ENSMUST00000164896.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2 	ENSMUST00000171968.1|Ctbp2|ENSMUSG00000030970.10|C-terminal binding protein 2
mm10_v2_chr5_-_149051300_149051390	1.39108	Foxa2_Foxa1	ENSMUST00000110505.1|Hmgb1|ENSMUSG00000066551.6|high mobility group box 1
mm10_v2_chr15_-_89170688_89170688	1.36023	Foxa2_Foxa1	ENSMUST00000060808.9|Plxnb2|ENSMUSG00000036606.10|plexin B2
mm10_v2_chr14_-_121915774_121915793	1.35737	Foxa2_Foxa1	ENSMUST00000055475.7|Gpr18|ENSMUSG00000050350.7|G protein-coupled receptor 18
mm10_v2_chr1_-_128592284_128592307	1.3367	Foxa2_Foxa1	ENSMUST00000052172.6|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4 	ENSMUST00000142893.1|Cxcr4|ENSMUSG00000045382.6|chemokine (C-X-C motif) receptor 4
mm10_v2_chr7_-_73375722_73375744	1.31006	Foxa2_Foxa1	ENSMUST00000181299.1|A730056A06Rik|ENSMUSG00000097756.1|RIKEN cDNA A730056A06 gene
mm10_v2_chr17_+_7925990_7926006	1.29188	Foxa2_Foxa1	ENSMUST00000036370.7|Tagap|ENSMUSG00000033450.7|T cell activation Rho GTPase activating protein
mm10_v2_chr7_+_113765998_113766039	1.29029	Foxa2_Foxa1	ENSMUST00000046687.9|Spon1|ENSMUSG00000038156.9|spondin 1, (f-spondin) extracellular matrix protein
mm10_v2_chr7_+_140763739_140763828	1.24095	Foxa2_Foxa1	ENSMUST00000026552.7|Cyp2e1|ENSMUSG00000025479.8|cytochrome P450, family 2, subfamily e, polypeptide 1
mm10_v2_chr16_-_59632520_59632541	1.23641	Foxa2_Foxa1	ENSMUST00000118438.1|Arl6|ENSMUSG00000022722.12|ADP-ribosylation factor-like 6
mm10_v2_chr11_+_87699897_87699897	1.23416	Foxa2_Foxa1	ENSMUST00000040089.4|Rnf43|ENSMUSG00000034177.9|ring finger protein 43
mm10_v2_chr5_-_20951769_20951824	1.21955	Foxa2_Foxa1	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr7_+_90426312_90426312	1.20181	Foxa2_Foxa1	ENSMUST00000061391.7|Ccdc89|ENSMUSG00000044362.7|coiled-coil domain containing 89
mm10_v2_chr8_-_121944886_121944908	1.1972	Foxa2_Foxa1	ENSMUST00000057653.7|Car5a|ENSMUSG00000025317.7|carbonic anhydrase 5a, mitochondrial
mm10_v2_chr11_-_100146120_100146120	1.19567	Foxa2_Foxa1	ENSMUST00000007317.7|Krt19|ENSMUSG00000020911.8|keratin 19
mm10_v2_chr5_+_16553488_16553550	1.18382	Foxa2_Foxa1	ENSMUST00000030683.3|Hgf|ENSMUSG00000028864.3|hepatocyte growth factor
mm10_v2_chr3_+_76593550_76593550	1.17501	Foxa2_Foxa1	ENSMUST00000162471.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr2_-_71055534_71055611	1.16944	Foxa2_Foxa1	ENSMUST00000090849.5|Mettl8|ENSMUSG00000041975.11|methyltransferase like 8 	ENSMUST00000100037.2|Mettl8|ENSMUSG00000041975.11|methyltransferase like 8 	ENSMUST00000112186.2|Mettl8|ENSMUSG00000041975.11|methyltransferase like 8
mm10_v2_chr9_+_96196246_96196280	1.16943	Foxa2_Foxa1	ENSMUST00000165120.2|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2 	ENSMUST00000034982.9|Tfdp2|ENSMUSG00000032411.9|transcription factor Dp 2
mm10_v2_chr7_+_81862674_81862692	1.15228	Foxa2_Foxa1	ENSMUST00000119543.1|Tm6sf1|ENSMUSG00000038623.3|transmembrane 6 superfamily member 1
mm10_v2_chr17_-_79896028_79896123	1.13398	Foxa2_Foxa1	ENSMUST00000068282.5|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2 	ENSMUST00000112437.1|Atl2|ENSMUSG00000059811.6|atlastin GTPase 2
mm10_v2_chr19_-_53371766_53371766	1.10784	Foxa2_Foxa1	ENSMUST00000086887.1|Gm10197|ENSMUSG00000067085.1|predicted gene 10197
mm10_v2_chr7_+_102229999_102230046	1.10523	Foxa2_Foxa1	ENSMUST00000120119.1|Pgap2|ENSMUSG00000030990.11|post-GPI attachment to proteins 2
mm10_v2_chr9_+_107580117_107580117	1.10206	Foxa2_Foxa1	ENSMUST00000093785.4|Nat6|ENSMUSG00000079334.2|N-acetyltransferase 6
mm10_v2_chr11_-_17008647_17008702	1.09692	Foxa2_Foxa1	ENSMUST00000102881.3|Plek|ENSMUSG00000020120.9|pleckstrin
mm10_v2_chr7_+_24907618_24907647	1.07525	Foxa2_Foxa1	ENSMUST00000151121.1|Arhgef1|ENSMUSG00000040940.12|Rho guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr10_-_76442758_76442912	1.06782	Foxa2_Foxa1	ENSMUST00000001179.5|Pcnt|ENSMUSG00000001151.9|pericentrin (kendrin)
mm10_v2_chr15_+_59648350_59648369	1.06299	Foxa2_Foxa1	ENSMUST00000067543.6|Trib1|ENSMUSG00000032501.8|tribbles homolog 1 (Drosophila)
mm10_v2_chr1_+_132298606_132298631	1.02791	Foxa2_Foxa1	ENSMUST00000046071.4|Klhdc8a|ENSMUSG00000042115.4|kelch domain containing 8A
mm10_v2_chrX_+_109095359_109095391	1.00919	Foxa2_Foxa1	ENSMUST00000033598.8|Sh3bgrl|ENSMUSG00000031246.8|SH3-binding domain glutamic acid-rich protein like
mm10_v2_chr2_-_147186389_147186413	1.00844	Foxa2_Foxa1	ENSMUST00000109970.3|Nkx2-2|ENSMUSG00000027434.10|NK2 homeobox 2 	ENSMUST00000067075.5|Nkx2-2|ENSMUSG00000027434.10|NK2 homeobox 2
mm10_v2_chr5_-_87482258_87482283	0.999782	Foxa2_Foxa1	ENSMUST00000079811.6|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1 	ENSMUST00000144144.1|Ugt2a1|ENSMUSG00000029268.8|UDP glucuronosyltransferase 2 family, polypeptide A1
mm10_v2_chr5_+_75152274_75152297	0.985946	Foxa2_Foxa1	ENSMUST00000000476.8|Pdgfra|ENSMUSG00000029231.9|platelet derived growth factor receptor, alpha polypeptide
mm10_v2_chr8_-_125492710_125492710	0.984169	Foxa2_Foxa1	ENSMUST00000108775.1|Sipa1l2|ENSMUSG00000001995.8|signal-induced proliferation-associated 1 like 2
mm10_v2_chr9_+_14784660_14784702	0.959416	Foxa2_Foxa1	ENSMUST00000115632.3|Mre11a|ENSMUSG00000031928.8|meiotic recombination 11 homolog A (S. cerevisiae) 	ENSMUST00000147305.1|Mre11a|ENSMUSG00000031928.8|meiotic recombination 11 homolog A (S. cerevisiae)
mm10_v2_chr1_+_59482133_59482179	0.943452	Foxa2_Foxa1	ENSMUST00000114246.2|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila) 	ENSMUST00000037105.6|Fzd7|ENSMUSG00000041075.7|frizzled homolog 7 (Drosophila)
mm10_v2_chr18_+_52465676_52465710	0.914443	Foxa2_Foxa1	ENSMUST00000025406.7|Srfbp1|ENSMUSG00000024528.7|serum response factor binding protein 1
mm10_v2_chr10_-_14718191_14718228	0.876845	Foxa2_Foxa1	ENSMUST00000020016.4|Gje1|ENSMUSG00000019867.4|gap junction protein, epsilon 1
mm10_v2_chr11_+_70432627_70432707	0.873381	Foxa2_Foxa1	ENSMUST00000084954.6|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000108568.3|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000079056.2|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102564.4|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000124943.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000150076.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2 	ENSMUST00000102563.1|Arrb2|ENSMUSG00000060216.9|arrestin, beta 2
mm10_v2_chr9_-_69760924_69760940	0.860175	Foxa2_Foxa1	ENSMUST00000071281.4|Foxb1|ENSMUSG00000059246.4|forkhead box B1
mm10_v2_chr9_+_44072196_44072211	0.855405	Foxa2_Foxa1	ENSMUST00000176671.1|Usp2|ENSMUSG00000032010.8|ubiquitin specific peptidase 2
mm10_v2_chr12_-_56613270_56613291	0.824374	Foxa2_Foxa1	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr1_-_13374072_13374083	0.819044	Foxa2_Foxa1	ENSMUST00000068304.6|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2 	ENSMUST00000006037.6|Ncoa2|ENSMUSG00000005886.8|nuclear receptor coactivator 2
mm10_v2_chr14_+_66784523_66784537	0.816546	Foxa2_Foxa1	ENSMUST00000071522.2|Gm10032|ENSMUSG00000057913.2|predicted gene 10032
mm10_v2_chr16_-_22657165_22657178	0.814961	Foxa2_Foxa1	ENSMUST00000089925.3|Dgkg|ENSMUSG00000022861.10|diacylglycerol kinase, gamma
mm10_v2_chr8_-_47713920_47713938	0.796668	Foxa2_Foxa1	ENSMUST00000038738.5|Cdkn2aip|ENSMUSG00000038069.5|CDKN2A interacting protein
mm10_v2_chr5_+_120431770_120431905	0.782292	Foxa2_Foxa1	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr2_+_122028544_122028563	0.765488	Foxa2_Foxa1	ENSMUST00000028668.7|Eif3j1|ENSMUSG00000027236.8|eukaryotic translation initiation factor 3, subunit J1
mm10_v2_chr16_+_49699198_49699304	0.756143	Foxa2_Foxa1	ENSMUST00000046777.4|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57 	ENSMUST00000142682.1|Ift57|ENSMUSG00000032965.4|intraflagellar transport 57
mm10_v2_chr13_+_49582745_49582778	0.749809	Foxa2_Foxa1	ENSMUST00000065494.7|Omd|ENSMUSG00000048368.8|osteomodulin
mm10_v2_chr13_+_83738874_83738887	0.742583	Foxa2_Foxa1	ENSMUST00000052354.4|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr9_+_43744399_43744576	0.733947	Foxa2_Foxa1	ENSMUST00000034510.7|Pvrl1|ENSMUSG00000032012.7|poliovirus receptor-related 1
mm10_v2_chr1_+_10056922_10056926	0.708408	Foxa2_Foxa1	ENSMUST00000149214.1|Cspp1|ENSMUSG00000056763.10|centrosome and spindle pole associated protein 1
mm10_v2_chr9_+_53537021_53537074	0.697557	Foxa2_Foxa1	ENSMUST00000035850.7|Npat|ENSMUSG00000033054.7|nuclear protein in the AT region
mm10_v2_chr5_-_115098295_115098295	0.67444	Foxa2_Foxa1	ENSMUST00000100848.2|Gm10401|ENSMUSG00000072693.2|predicted gene 10401
mm10_v2_chr9_-_48835932_48835962	0.659491	Foxa2_Foxa1	ENSMUST00000093852.3|Zbtb16|ENSMUSG00000066687.4|zinc finger and BTB domain containing 16
mm10_v2_chr2_-_177267036_177267036	0.639251	Foxa2_Foxa1	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr1_-_170110491_170110532	0.639107	Foxa2_Foxa1	ENSMUST00000027985.2|Ddr2|ENSMUSG00000026674.3|discoidin domain receptor family, member 2
mm10_v2_chr2_+_164746028_164746039	0.624107	Foxa2_Foxa1	ENSMUST00000109327.3|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1
mm10_v2_chrM_+_2743_2761	0.618867	Foxa2_Foxa1	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr2_+_143915273_143915337	0.610803	Foxa2_Foxa1	ENSMUST00000103172.3|Dstn|ENSMUSG00000015932.8|destrin
mm10_v2_chr17_-_56121946_56121958	0.606327	Foxa2_Foxa1	ENSMUST00000041357.7|Lrg1|ENSMUSG00000037095.7|leucine-rich alpha-2-glycoprotein 1
mm10_v2_chr16_+_43364145_43364204	0.605249	Foxa2_Foxa1	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr3_+_32397671_32397671	0.597244	Foxa2_Foxa1	ENSMUST00000108243.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr13_-_115090123_115090241	0.594527	Foxa2_Foxa1	ENSMUST00000109226.3|Pelo|ENSMUSG00000042275.8|pelota homolog (Drosophila)
mm10_v2_chr19_+_30030439_30030528	0.582049	Foxa2_Foxa1	ENSMUST00000025739.7|Uhrf2|ENSMUSG00000024817.7|ubiquitin-like, containing PHD and RING finger domains 2
mm10_v2_chr16_+_37868383_37868481	0.578469	Foxa2_Foxa1	ENSMUST00000078717.6|Lrrc58|ENSMUSG00000034158.9|leucine rich repeat containing 58
mm10_v2_chr7_-_34655500_34655515	0.573402	Foxa2_Foxa1	ENSMUST00000032709.1|Kctd15|ENSMUSG00000030499.3|potassium channel tetramerisation domain containing 15
mm10_v2_chr14_-_55643251_55643382	0.568855	Foxa2_Foxa1	ENSMUST00000120041.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000121937.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000133707.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000002391.8|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1 	ENSMUST00000121791.1|Tm9sf1|ENSMUSG00000002320.9|transmembrane 9 superfamily member 1
mm10_v2_chr3_+_135825648_135825664	0.561726	Foxa2_Foxa1	ENSMUST00000180196.1|Slc39a8|ENSMUSG00000053897.9|solute carrier family 39 (metal ion transporter), member 8
mm10_v2_chr3_+_79884496_79884571	0.542654	Foxa2_Foxa1	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr1_-_170867761_170867784	0.538041	Foxa2_Foxa1	ENSMUST00000027974.6|Atf6|ENSMUSG00000026663.6|activating transcription factor 6
mm10_v2_chr15_+_4375462_4375511	0.520806	Foxa2_Foxa1	ENSMUST00000061925.4|Plcxd3|ENSMUSG00000049148.8|phosphatidylinositol-specific phospholipase C, X domain containing 3
mm10_v2_chr7_-_87493371_87493438	0.50973	Foxa2_Foxa1	ENSMUST00000004770.5|Tyr|ENSMUSG00000004651.5|tyrosinase
mm10_v2_chr13_+_8202860_8202871	0.504709	Foxa2_Foxa1	ENSMUST00000064473.6|Adarb2|ENSMUSG00000052551.9|adenosine deaminase, RNA-specific, B2
mm10_v2_chr4_-_103215147_103215201	0.473717	Foxa2_Foxa1	ENSMUST00000150285.1|Slc35d1|ENSMUSG00000028521.11|solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
mm10_v2_chr2_+_164745979_164746025	0.472508	Foxa2_Foxa1	ENSMUST00000017443.7|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1 	ENSMUST00000109326.3|Dnttip1|ENSMUSG00000017299.7|deoxynucleotidyltransferase, terminal, interacting protein 1
mm10_v2_chr3_-_116614587_116614587	0.471265	Foxa2_Foxa1	ENSMUST00000041524.4|Trmt13|ENSMUSG00000033439.6|tRNA methyltransferase 13
mm10_v2_chrX_-_104671048_104671071	0.465515	Foxa2_Foxa1	ENSMUST00000042070.5|Zdhhc15|ENSMUSG00000033906.5|zinc finger, DHHC domain containing 15
mm10_v2_chr2_+_69723071_69723093	0.432014	Foxa2_Foxa1	ENSMUST00000040915.8|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr12_-_57546121_57546141	0.407401	Foxa2_Foxa1	ENSMUST00000044380.6|Foxa1|ENSMUSG00000035451.6|forkhead box A1
mm10_v2_chr8_+_68276567_68276705	0.394734	Foxa2_Foxa1	ENSMUST00000066594.3|Sh2d4a|ENSMUSG00000053886.3|SH2 domain containing 4A
mm10_v2_chr18_-_38918642_38918771	0.389363	Foxa2_Foxa1	ENSMUST00000040647.4|Fgf1|ENSMUSG00000036585.9|fibroblast growth factor 1
mm10_v2_chr6_+_38918969_38918995	0.388274	Foxa2_Foxa1	ENSMUST00000003017.6|Tbxas1|ENSMUSG00000029925.7|thromboxane A synthase 1, platelet
mm10_v2_chr6_-_87851074_87851106	0.383592	Foxa2_Foxa1	ENSMUST00000032138.8|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein 	ENSMUST00000113619.1|Cnbp|ENSMUSG00000030057.9|cellular nucleic acid binding protein
mm10_v2_chr2_-_170194033_170194064	0.362627	Foxa2_Foxa1	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr5_-_5265224_5265309	0.347391	Foxa2_Foxa1	ENSMUST00000115450.1|Cdk14|ENSMUSG00000028926.9|cyclin-dependent kinase 14
mm10_v2_chr2_+_76675265_76675287	0.345829	Foxa2_Foxa1	ENSMUST00000111920.1|Plekha3|ENSMUSG00000002733.8|pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3
mm10_v2_chrX_+_169685191_169685250	0.272455	Foxa2_Foxa1	ENSMUST00000112104.1|Mid1|ENSMUSG00000035299.10|midline 1 	ENSMUST00000112107.1|Mid1|ENSMUSG00000035299.10|midline 1
mm10_v2_chr14_+_84443553_84443568	0.263136	Foxa2_Foxa1	ENSMUST00000071370.5|Pcdh17|ENSMUSG00000035566.6|protocadherin 17
mm10_v2_chr14_+_48670147_48670262	0.232949	Foxa2_Foxa1	ENSMUST00000183522.1|RP23-131O4.2|ENSMUSG00000098682.1|RP23-131O4.2	ENSMUST00000184869.1|RP23-131O4.2|ENSMUSG00000098682.1|RP23-131O4.2
mm10_v2_chr4_+_108847827_108847895	0.206949	Foxa2_Foxa1	ENSMUST00000102738.2|Kti12|ENSMUSG00000073775.3|KTI12 homolog, chromatin associated (S. cerevisiae)
mm10_v2_chr4_+_43669610_43669678	0.198492	Foxa2_Foxa1	ENSMUST00000107866.1|Tmem8b|ENSMUSG00000078716.3|transmembrane protein 8B
mm10_v2_chr3_+_79884576_79884597	0.197287	Foxa2_Foxa1	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr2_+_69722797_69722840	0.192083	Foxa2_Foxa1	ENSMUST00000090858.3|Ppig|ENSMUSG00000042133.10|peptidyl-prolyl isomerase G (cyclophilin G)
mm10_v2_chr1_-_52091066_52091066	0.139987	Foxa2_Foxa1	ENSMUST00000105087.1|Gm3940|ENSMUSG00000078291.1|predicted gene 3940
mm10_v2_chr3_-_106167564_106167564	0.129262	Foxa2_Foxa1	ENSMUST00000063062.8|Chi3l3|ENSMUSG00000040809.10|chitinase 3-like 3
mm10_v2_chr6_-_86765866_86765921	0.110564	Foxa2_Foxa1	ENSMUST00000113675.1|Anxa4|ENSMUSG00000029994.11|annexin A4
mm10_v2_chr3_-_131344892_131344940	0.110159	Foxa2_Foxa1	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr14_-_96519067_96519102	0.0568767	Foxa2_Foxa1	ENSMUST00000022666.7|Klhl1|ENSMUSG00000022076.9|kelch-like 1
mm10_v2_chr11_+_88973928_88973961	0.0499198	Foxa2_Foxa1	ENSMUST00000036649.4|Coil|ENSMUSG00000033983.7|coilin 	ENSMUST00000107898.3|Coil|ENSMUSG00000033983.7|coilin
mm10_v2_chr2_-_176917518_176917518	0.0468449	Foxa2_Foxa1	ENSMUST00000108931.2|Gm14296|ENSMUSG00000074527.5|predicted gene 14296
mm10_v2_chr1_+_9848375_9848398	0.0330558	Foxa2_Foxa1	ENSMUST00000097826.4|Sgk3|ENSMUSG00000025915.8|serum/glucocorticoid regulated kinase 3
mm10_v2_chr17_+_46161111_46161148	0.0281539	Foxa2_Foxa1	ENSMUST00000166563.1|Gtpbp2|ENSMUSG00000023952.7|GTP binding protein 2
mm10_v2_chrX_+_74424632_74424671	0.0162216	Foxa2_Foxa1	ENSMUST00000114129.2|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma 	ENSMUST00000132749.1|Ikbkg|ENSMUSG00000004221.10|inhibitor of kappaB kinase gamma
mm10_v2_chr5_+_45520221_45520327	0.0143656	Foxa2_Foxa1	ENSMUST00000156481.1|Med28|ENSMUSG00000015804.8|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast) 	ENSMUST00000119579.1|Med28|ENSMUSG00000015804.8|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast) 	ENSMUST00000118833.1|Med28|ENSMUSG00000015804.8|mediator of RNA polymerase II transcription, subunit 28 homolog (yeast)
