mm10_v2_chr17_+_35076902_35077073	13.4622	Hoxa11_Hoxc12	ENSMUST00000172494.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000172678.1|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E 	ENSMUST00000013910.4|Ly6g6e|ENSMUSG00000013766.5|lymphocyte antigen 6 complex, locus G6E
mm10_v2_chr1_-_56978534_56978650	13.1275	Hoxa11_Hoxc12	ENSMUST00000177282.1|Satb2|ENSMUSG00000038331.9|special AT-rich sequence binding protein 2
mm10_v2_chr6_+_108213086_108213123	10.4134	Hoxa11_Hoxc12	ENSMUST00000032192.6|Itpr1|ENSMUSG00000030102.8|inositol 1,4,5-trisphosphate receptor 1
mm10_v2_chr13_+_16014457_16014475	9.40656	Hoxa11_Hoxc12	ENSMUST00000164993.1|Inhba|ENSMUSG00000041324.7|inhibin beta-A
mm10_v2_chr14_+_80000292_80000309	8.56641	Hoxa11_Hoxc12	ENSMUST00000088735.3|Olfm4|ENSMUSG00000022026.6|olfactomedin 4
mm10_v2_chr1_+_43730593_43730633	7.13605	Hoxa11_Hoxc12	ENSMUST00000027217.8|1500015O10Rik|ENSMUSG00000026051.8|RIKEN cDNA 1500015O10 gene
mm10_v2_chr17_+_6270475_6270475	6.86418	Hoxa11_Hoxc12	ENSMUST00000088940.4|Tmem181a|ENSMUSG00000038141.8|transmembrane protein 181A
mm10_v2_chr16_-_57231434_57231509	5.97846	Hoxa11_Hoxc12	ENSMUST00000023431.6|Tbc1d23|ENSMUSG00000022749.6|TBC1 domain family, member 23
mm10_v2_chr9_+_53771499_53771535	5.37796	Hoxa11_Hoxc12	ENSMUST00000048670.8|Slc35f2|ENSMUSG00000042195.8|solute carrier family 35, member F2
mm10_v2_chr16_-_45408955_45409053	5.29355	Hoxa11_Hoxc12	ENSMUST00000163230.1|Cd200|ENSMUSG00000022661.8|CD200 antigen
mm10_v2_chr7_-_142661858_142661880	5.20296	Hoxa11_Hoxc12	ENSMUST00000145896.2|Igf2|ENSMUSG00000048583.10|insulin-like growth factor 2
mm10_v2_chr17_-_6477102_6477102	5.06726	Hoxa11_Hoxc12	ENSMUST00000167717.2|Tmem181b-ps|ENSMUSG00000079733.3|transmembrane protein 181B, pseudogene
mm10_v2_chrX_+_73064787_73064787	4.95302	Hoxa11_Hoxc12	ENSMUST00000060418.6|Pnma3|ENSMUSG00000046287.6|paraneoplastic antigen MA3
mm10_v2_chr3_-_117360876_117360876	4.76607	Hoxa11_Hoxc12	ENSMUST00000061071.8|D3Bwg0562e|ENSMUSG00000044667.8|DNA segment, Chr 3, Brigham & Women's Genetics 0562 expressed
mm10_v2_chr15_-_43869993_43870058	4.63555	Hoxa11_Hoxc12	ENSMUST00000067469.4|Tmem74|ENSMUSG00000054409.4|transmembrane protein 74
mm10_v2_chr5_+_66968961_66969132	4.5702	Hoxa11_Hoxc12	ENSMUST00000132991.1|Limch1|ENSMUSG00000037736.12|LIM and calponin homology domains 1
mm10_v2_chr14_+_27622433_27622543	4.12964	Hoxa11_Hoxc12	ENSMUST00000090302.5|Erc2|ENSMUSG00000040640.9|ELKS/RAB6-interacting/CAST family member 2
mm10_v2_chr17_+_8283762_8283852	3.58485	Hoxa11_Hoxc12	ENSMUST00000155364.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000046754.8|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1 	ENSMUST00000124023.1|Mpc1|ENSMUSG00000023861.11|mitochondrial pyruvate carrier 1
mm10_v2_chr11_-_62457772_62457835	3.46914	Hoxa11_Hoxc12	ENSMUST00000127471.2|Ncor1|ENSMUSG00000018501.11|nuclear receptor co-repressor 1
mm10_v2_chr11_-_115627948_115628122	3.36511	Hoxa11_Hoxc12	ENSMUST00000154623.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000106503.3|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000141614.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr11_-_95309557_95309602	3.23556	Hoxa11_Hoxc12	ENSMUST00000092766.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7 	ENSMUST00000072621.5|Kat7|ENSMUSG00000038909.10|K(lysine) acetyltransferase 7
mm10_v2_chr18_-_43393346_43393381	3.23301	Hoxa11_Hoxc12	ENSMUST00000025379.7|Dpysl3|ENSMUSG00000024501.13|dihydropyrimidinase-like 3
mm10_v2_chr9_-_55919605_55919605	3.21459	Hoxa11_Hoxc12	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chr18_+_69346143_69346203	3.08383	Hoxa11_Hoxc12	ENSMUST00000114980.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr11_-_115628125_115628164	3.04484	Hoxa11_Hoxc12	ENSMUST00000155709.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 	ENSMUST00000021089.4|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr11_-_115628260_115628298	2.98334	Hoxa11_Hoxc12	ENSMUST00000178003.1|Slc25a19|ENSMUSG00000020744.7|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19
mm10_v2_chr13_-_54749849_54749893	2.95633	Hoxa11_Hoxc12	ENSMUST00000135343.1|Gprin1|ENSMUSG00000069227.4|G protein-regulated inducer of neurite outgrowth 1
mm10_v2_chr6_+_96115249_96115311	2.87913	Hoxa11_Hoxc12	ENSMUST00000075080.5|Fam19a1|ENSMUSG00000059187.6|family with sequence similarity 19, member A1
mm10_v2_chr7_+_4460687_4460730	2.86585	Hoxa11_Hoxc12	ENSMUST00000167298.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1 	ENSMUST00000171445.1|Eps8l1|ENSMUSG00000006154.7|EPS8-like 1
mm10_v2_chrX_+_41401128_41401200	2.82048	Hoxa11_Hoxc12	ENSMUST00000115103.2|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr15_-_101850778_101850792	2.80515	Hoxa11_Hoxc12	ENSMUST00000023790.3|Krt1|ENSMUSG00000046834.6|keratin 1
mm10_v2_chr1_-_189922338_189922363	2.8016	Hoxa11_Hoxc12	ENSMUST00000027897.7|Smyd2|ENSMUSG00000026603.7|SET and MYND domain containing 2
mm10_v2_chr13_+_109685994_109686156	2.64865	Hoxa11_Hoxc12	ENSMUST00000074103.5|Pde4d|ENSMUSG00000021699.11|phosphodiesterase 4D, cAMP specific
mm10_v2_chrX_+_41401304_41401427	2.57442	Hoxa11_Hoxc12	ENSMUST00000076349.5|Gria3|ENSMUSG00000001986.10|glutamate receptor, ionotropic, AMPA3 (alpha 3)
mm10_v2_chr16_-_74411776_74411792	2.55574	Hoxa11_Hoxc12	ENSMUST00000116586.2|Robo2|ENSMUSG00000052516.11|roundabout homolog 2 (Drosophila)
mm10_v2_chr4_+_102741287_102741298	2.23685	Hoxa11_Hoxc12	ENSMUST00000097948.2|Sgip1|ENSMUSG00000028524.15|SH3-domain GRB2-like (endophilin) interacting protein 1
mm10_v2_chr7_-_73537621_73537766	2.01873	Hoxa11_Hoxc12	ENSMUST00000172704.1|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr6_-_118455475_118455528	1.91384	Hoxa11_Hoxc12	ENSMUST00000161519.1|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248 	ENSMUST00000069292.7|Zfp248|ENSMUSG00000030145.8|zinc finger protein 248
mm10_v2_chr8_+_25720054_25720099	1.90352	Hoxa11_Hoxc12	ENSMUST00000068916.8|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B 	ENSMUST00000139836.1|Ppapdc1b|ENSMUSG00000031570.10|phosphatidic acid phosphatase type 2 domain containing 1B
mm10_v2_chr1_-_93101825_93101849	1.78808	Hoxa11_Hoxc12	ENSMUST00000112958.2|Kif1a|ENSMUSG00000014602.9|kinesin family member 1A
mm10_v2_chr4_-_129378116_129378116	1.75768	Hoxa11_Hoxc12	ENSMUST00000030610.2|Zbtb8a|ENSMUSG00000028807.2|zinc finger and BTB domain containing 8a
mm10_v2_chr13_-_12464925_12464949	1.74939	Hoxa11_Hoxc12	ENSMUST00000124888.1|Lgals8|ENSMUSG00000057554.7|lectin, galactose binding, soluble 8
mm10_v2_chr12_+_78226627_78226655	1.74885	Hoxa11_Hoxc12	ENSMUST00000110388.2|Gphn|ENSMUSG00000047454.5|gephyrin 	ENSMUST00000052472.4|Gphn|ENSMUSG00000047454.5|gephyrin
mm10_v2_chr18_+_37655891_37655915	1.70487	Hoxa11_Hoxc12	ENSMUST00000097608.2|3222401L13Rik|ENSMUSG00000073590.2|RIKEN cDNA 3222401L13 gene
mm10_v2_chr4_+_130913120_130913137	1.65622	Hoxa11_Hoxc12	ENSMUST00000151698.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chr16_+_75592844_75592928	1.61049	Hoxa11_Hoxc12	ENSMUST00000114249.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000046378.7|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11 	ENSMUST00000114253.1|Rbm11|ENSMUSG00000032940.10|RNA binding motif protein 11
mm10_v2_chr2_+_28205648_28205672	1.56277	Hoxa11_Hoxc12	ENSMUST00000102879.3|Olfm1|ENSMUSG00000026833.12|olfactomedin 1 	ENSMUST00000028177.4|Olfm1|ENSMUSG00000026833.12|olfactomedin 1
mm10_v2_chr6_-_55681257_55681271	1.44209	Hoxa11_Hoxc12	ENSMUST00000044767.8|Neurod6|ENSMUSG00000037984.8|neurogenic differentiation 6
mm10_v2_chr3_+_129532386_129532440	1.40754	Hoxa11_Hoxc12	ENSMUST00000071402.2|Elovl6|ENSMUSG00000041220.6|ELOVL family member 6, elongation of long chain fatty acids (yeast)
mm10_v2_chr18_+_37333853_37333946	1.40189	Hoxa11_Hoxc12	ENSMUST00000061717.2|Pcdhb6|ENSMUSG00000051678.3|protocadherin beta 6
mm10_v2_chr2_-_180824596_180824630	1.37246	Hoxa11_Hoxc12	ENSMUST00000148700.1|Gm14340|ENSMUSG00000074507.6|predicted gene 14340
mm10_v2_chr4_+_130913264_130913358	1.37239	Hoxa11_Hoxc12	ENSMUST00000156225.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5 	ENSMUST00000156742.1|Laptm5|ENSMUSG00000028581.11|lysosomal-associated protein transmembrane 5
mm10_v2_chr8_+_104250925_104250940	1.35983	Hoxa11_Hoxc12	ENSMUST00000098464.4|Cklf|ENSMUSG00000054400.9|chemokine-like factor
mm10_v2_chr4_+_108328136_108328180	1.35412	Hoxa11_Hoxc12	ENSMUST00000131656.1|Selrc1|ENSMUSG00000048351.8|Sel1 repeat containing 1
mm10_v2_chr2_-_120970706_120970761	1.34748	Hoxa11_Hoxc12	ENSMUST00000028728.5|Ubr1|ENSMUSG00000027272.5|ubiquitin protein ligase E3 component n-recognin 1
mm10_v2_chr10_+_90071095_90071117	1.33792	Hoxa11_Hoxc12	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr12_-_27160311_27160476	1.28558	Hoxa11_Hoxc12	ENSMUST00000182473.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000177636.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866 	ENSMUST00000183238.1|Gm9866|ENSMUSG00000094002.2|predicted gene 9866
mm10_v2_chr17_+_22361453_22361522	1.27087	Hoxa11_Hoxc12	ENSMUST00000149699.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000088765.2|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000072477.4|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758 	ENSMUST00000121315.1|Zfp758|ENSMUSG00000044501.11|zinc finger protein 758
mm10_v2_chr3_-_88458876_88459043	1.23188	Hoxa11_Hoxc12	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr19_+_58943413_58943431	1.2207	Hoxa11_Hoxc12	ENSMUST00000054280.6|Eno4|ENSMUSG00000048029.7|enolase 4
mm10_v2_chr8_+_31150307_31150346	1.2073	Hoxa11_Hoxc12	ENSMUST00000098842.2|Tti2|ENSMUSG00000031577.9|TELO2 interacting protein 2
mm10_v2_chr13_+_98263242_98263302	1.17551	Hoxa11_Hoxc12	ENSMUST00000022164.8|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000150352.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr11_+_77216180_77216287	1.15735	Hoxa11_Hoxc12	ENSMUST00000037912.5|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila) 	ENSMUST00000156488.1|Ssh2|ENSMUSG00000037926.9|slingshot homolog 2 (Drosophila)
mm10_v2_chr13_+_98263187_98263221	1.15073	Hoxa11_Hoxc12	ENSMUST00000091356.3|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2 	ENSMUST00000123924.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr13_+_98263105_98263177	1.14102	Hoxa11_Hoxc12	ENSMUST00000150916.1|Ankra2|ENSMUSG00000021661.9|ankyrin repeat, family A (RFXANK-like), 2
mm10_v2_chr13_-_66851513_66851513	1.06129	Hoxa11_Hoxc12	ENSMUST00000169322.1|Gm17404|ENSMUSG00000095206.1|predicted gene, 17404
mm10_v2_chr3_-_88459047_88459101	1.0506	Hoxa11_Hoxc12	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr5_-_73256555_73256636	1.04965	Hoxa11_Hoxc12	ENSMUST00000171179.1|Fryl|ENSMUSG00000090491.1|furry homolog-like (Drosophila) 	ENSMUST00000101127.5|Fryl|ENSMUSG00000070733.7|furry homolog-like (Drosophila)
mm10_v2_chr13_-_99344652_99344706	1.03979	Hoxa11_Hoxc12	ENSMUST00000022153.6|Ptcd2|ENSMUSG00000021650.6|pentatricopeptide repeat domain 2
mm10_v2_chr16_+_23224724_23224804	1.02325	Hoxa11_Hoxc12	ENSMUST00000023601.7|St6gal1|ENSMUSG00000022885.9|beta galactoside alpha 2,6 sialyltransferase 1
mm10_v2_chr15_-_77970750_77970824	0.987493	Hoxa11_Hoxc12	ENSMUST00000100484.4|Eif3d|ENSMUSG00000016554.8|eukaryotic translation initiation factor 3, subunit D
mm10_v2_chr16_+_87354185_87354249	0.982632	Hoxa11_Hoxc12	ENSMUST00000054442.4|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118310.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000120284.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative) 	ENSMUST00000118115.1|N6amt1|ENSMUSG00000044442.5|N-6 adenine-specific DNA methyltransferase 1 (putative)
mm10_v2_chr6_-_29216277_29216292	0.959513	Hoxa11_Hoxc12	ENSMUST00000162215.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chr6_+_40325471_40325501	0.954021	Hoxa11_Hoxc12	ENSMUST00000031977.8|Agk|ENSMUSG00000029916.8|acylglycerol kinase
mm10_v2_chr11_-_62789402_62789443	0.944645	Hoxa11_Hoxc12	ENSMUST00000108705.1|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr2_-_104712122_104712180	0.911202	Hoxa11_Hoxc12	ENSMUST00000111118.1|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1 	ENSMUST00000028597.3|Tcp11l1|ENSMUSG00000027175.4|t-complex 11 like 1
mm10_v2_chr8_+_40307458_40307458	0.882354	Hoxa11_Hoxc12	ENSMUST00000068999.7|Micu3|ENSMUSG00000039478.9|mitochondrial calcium uptake family, member 3
mm10_v2_chr14_-_104522615_104522707	0.874454	Hoxa11_Hoxc12	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr11_-_62789445_62789478	0.856357	Hoxa11_Hoxc12	ENSMUST00000054654.6|Zfp286|ENSMUSG00000047342.10|zinc finger protein 286
mm10_v2_chr11_+_82045705_82045721	0.851301	Hoxa11_Hoxc12	ENSMUST00000021011.2|Ccl7|ENSMUSG00000035373.2|chemokine (C-C motif) ligand 7
mm10_v2_chr6_-_87809757_87809787	0.850318	Hoxa11_Hoxc12	ENSMUST00000032134.7|Rab43|ENSMUSG00000030055.10|RAB43, member RAS oncogene family
mm10_v2_chr3_+_32436376_32436376	0.846386	Hoxa11_Hoxc12	ENSMUST00000108242.1|Pik3ca|ENSMUSG00000027665.7|phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
mm10_v2_chr6_-_29216301_29216364	0.811762	Hoxa11_Hoxc12	ENSMUST00000162739.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000162099.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1 	ENSMUST00000159124.1|Impdh1|ENSMUSG00000003500.7|inosine 5'-phosphate dehydrogenase 1
mm10_v2_chrX_+_20364481_20364616	0.774471	Hoxa11_Hoxc12	ENSMUST00000033372.6|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115391.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human) 	ENSMUST00000115387.1|Rp2h|ENSMUSG00000060090.10|retinitis pigmentosa 2 homolog (human)
mm10_v2_chr8_-_69625503_69625559	0.75798	Hoxa11_Hoxc12	ENSMUST00000121886.1|Zfp868|ENSMUSG00000060427.9|zinc finger protein 868
mm10_v2_chr12_-_20900867_20900867	0.730648	Hoxa11_Hoxc12	ENSMUST00000079237.5|Zfp125|ENSMUSG00000069755.4|zinc finger protein 125
mm10_v2_chr12_-_23780265_23780265	0.726725	Hoxa11_Hoxc12	ENSMUST00000072014.4|Gm10330|ENSMUSG00000071362.2|predicted gene 10330
mm10_v2_chr2_+_166805506_166805605	0.695407	Hoxa11_Hoxc12	ENSMUST00000099078.3|Arfgef2|ENSMUSG00000074582.4|ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)
mm10_v2_chr19_-_7483212_7483229	0.672117	Hoxa11_Hoxc12	ENSMUST00000088169.5|Rtn3|ENSMUSG00000024758.8|reticulon 3
mm10_v2_chr3_+_79885930_79886002	0.657325	Hoxa11_Hoxc12	ENSMUST00000029567.8|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr11_-_30986326_30986372	0.644074	Hoxa11_Hoxc12	ENSMUST00000020553.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2 	ENSMUST00000101394.4|Chac2|ENSMUSG00000020309.6|ChaC, cation transport regulator 2
mm10_v2_chr2_+_23068168_23068241	0.610732	Hoxa11_Hoxc12	ENSMUST00000028121.7|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000114523.2|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5 	ENSMUST00000144088.1|Acbd5|ENSMUSG00000026781.9|acyl-Coenzyme A binding domain containing 5
mm10_v2_chr10_-_120979327_120979373	0.607048	Hoxa11_Hoxc12	ENSMUST00000119944.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3 	ENSMUST00000119093.1|Lemd3|ENSMUSG00000048661.8|LEM domain containing 3
mm10_v2_chr5_-_143292356_143292356	0.583228	Hoxa11_Hoxc12	ENSMUST00000180336.1|Zfp853|ENSMUSG00000093910.1|zinc finger protein 853
mm10_v2_chr8_+_105225145_105225193	0.570921	Hoxa11_Hoxc12	ENSMUST00000034361.3|D230025D16Rik|ENSMUSG00000031889.3|RIKEN cDNA D230025D16 gene
mm10_v2_chrX_-_165004829_165004829	0.568967	Hoxa11_Hoxc12	ENSMUST00000114890.2|Gm17604|ENSMUSG00000079600.2|predicted gene, 17604
mm10_v2_chr14_+_49172202_49172254	0.560447	Hoxa11_Hoxc12	ENSMUST00000153488.1|Naa30|ENSMUSG00000036282.8|N(alpha)-acetyltransferase 30, NatC catalytic subunit
mm10_v2_chr13_-_66852017_66852017	0.533236	Hoxa11_Hoxc12	ENSMUST00000059329.6|Gm17449|ENSMUSG00000094740.1|predicted gene, 17449
mm10_v2_chr18_-_38209762_38209786	0.520566	Hoxa11_Hoxc12	ENSMUST00000057185.6|Pcdh1|ENSMUSG00000051375.9|protocadherin 1
mm10_v2_chr6_+_42286709_42286856	0.481491	Hoxa11_Hoxc12	ENSMUST00000163936.1|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr6_+_91878034_91878089	0.47239	Hoxa11_Hoxc12	ENSMUST00000037783.5|Ccdc174|ENSMUSG00000034083.10|coiled-coil domain containing 174
mm10_v2_chr7_+_126649297_126649344	0.455129	Hoxa11_Hoxc12	ENSMUST00000032956.8|Ccdc101|ENSMUSG00000030714.8|coiled-coil domain containing 101
mm10_v2_chr11_+_55213783_55213814	0.4501	Hoxa11_Hoxc12	ENSMUST00000108867.1|Slc36a1|ENSMUSG00000020261.9|solute carrier family 36 (proton/amino acid symporter), member 1
mm10_v2_chr5_-_123666682_123666695	0.421415	Hoxa11_Hoxc12	ENSMUST00000149410.1|Clip1|ENSMUSG00000049550.11|CAP-GLY domain containing linker protein 1
mm10_v2_chr16_-_23225334_23225368	0.419056	Hoxa11_Hoxc12	ENSMUST00000055369.4|BC106179|ENSMUSG00000045231.4|cDNA sequence BC106179
mm10_v2_chr19_-_46338632_46338670	0.415806	Hoxa11_Hoxc12	ENSMUST00000051234.8|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2 	ENSMUST00000167861.1|Cuedc2|ENSMUSG00000036748.9|CUE domain containing 2
mm10_v2_chr5_-_116024475_116024508	0.363231	Hoxa11_Hoxc12	ENSMUST00000111999.1|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chr11_-_72267141_72267222	0.36256	Hoxa11_Hoxc12	ENSMUST00000137701.1|Slc13a5|ENSMUSG00000020805.7|solute carrier family 13 (sodium-dependent citrate transporter), member 5
mm10_v2_chr5_-_20951769_20951824	0.350842	Hoxa11_Hoxc12	ENSMUST00000036489.5|Rsbn1l|ENSMUSG00000039968.5|round spermatid basic protein 1-like
mm10_v2_chr12_+_59066908_59066931	0.304137	Hoxa11_Hoxc12	ENSMUST00000021381.4|Pnn|ENSMUSG00000020994.4|pinin
mm10_v2_chr11_+_3963970_3963983	0.294741	Hoxa11_Hoxc12	ENSMUST00000020705.4|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish) 	ENSMUST00000109985.1|Pes1|ENSMUSG00000020430.6|pescadillo homolog 1, containing BRCT domain (zebrafish)
mm10_v2_chr16_+_96235801_96235801	0.272261	Hoxa11_Hoxc12	ENSMUST00000113800.2|B3galt5|ENSMUSG00000074892.3|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5
mm10_v2_chr8_+_124023394_124023394	0.270661	Hoxa11_Hoxc12	ENSMUST00000034457.8|Urb2|ENSMUSG00000031976.8|URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
mm10_v2_chr17_-_24455265_24455345	0.241378	Hoxa11_Hoxc12	ENSMUST00000056032.7|E4f1|ENSMUSG00000024137.8|E4F transcription factor 1
mm10_v2_chr19_-_7341848_7341863	0.240159	Hoxa11_Hoxc12	ENSMUST00000171393.1|Mark2|ENSMUSG00000024969.9|MAP/microtubule affinity-regulating kinase 2
mm10_v2_chr7_-_126649556_126649580	0.237118	Hoxa11_Hoxc12	ENSMUST00000084587.1|2510046G10Rik|ENSMUSG00000066175.1|RIKEN cDNA 2510046G10 gene
mm10_v2_chr13_-_98262946_98263020	0.229461	Hoxa11_Hoxc12	ENSMUST00000040972.2|Utp15|ENSMUSG00000041747.2|UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)
mm10_v2_chr6_+_42286676_42286687	0.224901	Hoxa11_Hoxc12	ENSMUST00000031894.6|Clcn1|ENSMUSG00000029862.9|chloride channel 1
mm10_v2_chr7_-_141435327_141435397	0.217059	Hoxa11_Hoxc12	ENSMUST00000138865.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr13_+_58281183_58281196	0.196423	Hoxa11_Hoxc12	ENSMUST00000180882.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555 	ENSMUST00000180452.1|Gm26555|ENSMUSG00000097399.1|predicted gene, 26555
mm10_v2_chr15_+_85510812_85510812	0.133969	Hoxa11_Hoxc12	ENSMUST00000079690.2|Gm4825|ENSMUSG00000063548.2|predicted pseudogene 4825
mm10_v2_chr1_+_178529113_178529134	0.128911	Hoxa11_Hoxc12	ENSMUST00000161017.1|Kif26b|ENSMUSG00000026494.6|kinesin family member 26B
mm10_v2_chr9_-_44407526_44407551	0.121296	Hoxa11_Hoxc12	ENSMUST00000034623.6|Trappc4|ENSMUSG00000032112.9|trafficking protein particle complex 4
mm10_v2_chr4_-_45408646_45408768	0.119981	Hoxa11_Hoxc12	ENSMUST00000153904.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000132815.2|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000107796.1|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51 	ENSMUST00000116341.3|Slc25a51|ENSMUSG00000045973.12|solute carrier family 25, member 51
mm10_v2_chr3_+_89177463_89177543	0.102193	Hoxa11_Hoxc12	ENSMUST00000029684.8|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000120697.1|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3 	ENSMUST00000098941.4|Scamp3|ENSMUSG00000028049.9|secretory carrier membrane protein 3
mm10_v2_chr14_-_34503323_34503345	0.0921144	Hoxa11_Hoxc12	ENSMUST00000171343.1|Bmpr1a|ENSMUSG00000021796.8|bone morphogenetic protein receptor, type 1A
mm10_v2_chr11_-_5542177_5542219	0.091503	Hoxa11_Hoxc12	ENSMUST00000020776.4|Ccdc117|ENSMUSG00000020482.4|coiled-coil domain containing 117
mm10_v2_chr11_-_23895208_23895280	0.0582823	Hoxa11_Hoxc12	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr18_-_46280820_46280850	0.0485876	Hoxa11_Hoxc12	ENSMUST00000025354.3|Pggt1b|ENSMUSG00000024477.3|protein geranylgeranyltransferase type I, beta subunit
mm10_v2_chr15_-_100424092_100424173	0.0406618	Hoxa11_Hoxc12	ENSMUST00000154676.1|Slc11a2|ENSMUSG00000023030.10|solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2
mm10_v2_chr11_+_75732869_75732975	0.033228	Hoxa11_Hoxc12	ENSMUST00000067664.3|Ywhae|ENSMUSG00000020849.7|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide
mm10_v2_chr7_-_141434532_141434605	0.0326393	Hoxa11_Hoxc12	ENSMUST00000133021.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000106007.3|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000150026.1|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22 	ENSMUST00000133206.2|Slc25a22|ENSMUSG00000019082.11|solute carrier family 25 (mitochondrial carrier, glutamate), member 22
mm10_v2_chr5_-_116024452_116024468	0.0145411	Hoxa11_Hoxc12	ENSMUST00000031486.7|Prkab1|ENSMUSG00000029513.8|protein kinase, AMP-activated, beta 1 non-catalytic subunit
mm10_v2_chr9_-_106247730_106247874	0.0137341	Hoxa11_Hoxc12	ENSMUST00000112524.2|Alas1|ENSMUSG00000032786.8|aminolevulinic acid synthase 1 	ENSMUST00000074082.6|Alas1|ENSMUSG00000032786.8|aminolevulinic acid synthase 1
mm10_v2_chrX_+_74270812_74270979	0.00970746	Hoxa11_Hoxc12	ENSMUST00000008826.7|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000151702.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000074085.5|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10 	ENSMUST00000135690.1|Rpl10|ENSMUSG00000008682.7|ribosomal protein L10
