mm10_v2_chr2_+_71528657_71528683	28.389	Hoxa6	ENSMUST00000126400.1|Dlx1|ENSMUSG00000041911.3|distal-less homeobox 1
mm10_v2_chr14_-_118052235_118052253	17.03	Hoxa6	ENSMUST00000022725.2|Dct|ENSMUSG00000022129.3|dopachrome tautomerase
mm10_v2_chr19_-_59170978_59170978	16.8971	Hoxa6	ENSMUST00000172821.2|Vax1|ENSMUSG00000006270.6|ventral anterior homeobox containing gene 1
mm10_v2_chr1_-_163313661_163313710	14.6695	Hoxa6	ENSMUST00000174397.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000075805.6|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1 	ENSMUST00000027878.7|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr7_-_37773555_37773641	13.7515	Hoxa6	ENSMUST00000176534.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr8_-_46294592_46294671	11.7282	Hoxa6	ENSMUST00000058636.7|Helt|ENSMUSG00000047171.7|helt bHLH transcription factor
mm10_v2_chr7_-_116038734_116038750	10.8207	Hoxa6	ENSMUST00000166877.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr14_-_48665098_48665246	9.93958	Hoxa6	ENSMUST00000118578.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr13_-_103764502_103764505	9.6183	Hoxa6	ENSMUST00000074616.5|Srek1|ENSMUSG00000032621.7|splicing regulatory glutamine/lysine-rich protein 1
mm10_v2_chr1_+_6730051_6730117	9.55297	Hoxa6	ENSMUST00000043578.6|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000131467.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000150761.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18 	ENSMUST00000151281.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr16_+_42907563_42907684	9.25245	Hoxa6	ENSMUST00000151244.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000114694.2|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr6_+_15185456_15185563	8.97278	Hoxa6	ENSMUST00000115472.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115474.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000031545.7|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000137628.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr9_+_118478344_118478451	8.19858	Hoxa6	ENSMUST00000035020.8|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr10_-_42583628_42583639	8.11781	Hoxa6	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr2_+_38341068_38341092	7.82659	Hoxa6	ENSMUST00000133661.1|Lhx2|ENSMUSG00000000247.5|LIM homeobox protein 2
mm10_v2_chr2_+_70474923_70474923	7.64953	Hoxa6	ENSMUST00000100043.2|Sp5|ENSMUSG00000075304.2|trans-acting transcription factor 5
mm10_v2_chr4_+_11579647_11579674	7.30328	Hoxa6	ENSMUST00000180239.1|Fsbp|ENSMUSG00000094595.1|fibrinogen silencer binding protein
mm10_v2_chr9_+_118478182_118478212	7.17773	Hoxa6	ENSMUST00000111763.1|Eomes|ENSMUSG00000032446.8|eomesodermin homolog (Xenopus laevis)
mm10_v2_chr4_-_110292719_110292732	7.11842	Hoxa6	ENSMUST00000106601.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr18_-_84086379_84086404	7.08977	Hoxa6	ENSMUST00000060303.8|Tshz1|ENSMUSG00000046982.9|teashirt zinc finger family member 1
mm10_v2_chr1_-_165934900_165935036	6.88398	Hoxa6	ENSMUST00000069609.5|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111427.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000111426.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr2_+_20737306_20737321	6.68251	Hoxa6	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr19_+_55894508_55894534	6.39555	Hoxa6	ENSMUST00000142291.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr13_-_97747373_97747384	6.34314	Hoxa6	ENSMUST00000123535.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr11_-_19018956_19018973	6.28979	Hoxa6	ENSMUST00000068264.7|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000144988.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1 	ENSMUST00000185131.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr6_+_15196949_15197102	6.22579	Hoxa6	ENSMUST00000151301.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000131414.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000140557.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2 	ENSMUST00000115469.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr2_-_36104060_36104073	6.09678	Hoxa6	ENSMUST00000112961.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6 	ENSMUST00000112966.3|Lhx6|ENSMUSG00000026890.13|LIM homeobox protein 6
mm10_v2_chr10_+_88091070_88091076	5.76507	Hoxa6	ENSMUST00000048621.7|Pmch|ENSMUSG00000035383.7|pro-melanin-concentrating hormone
mm10_v2_chr6_+_15185203_15185244	5.65532	Hoxa6	ENSMUST00000154448.1|Foxp2|ENSMUSG00000029563.10|forkhead box P2
mm10_v2_chr2_-_18048784_18048822	5.61206	Hoxa6	ENSMUST00000142856.1|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr2_+_181767040_181767073	5.57311	Hoxa6	ENSMUST00000108756.1|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr11_+_102604370_102604435	5.45865	Hoxa6	ENSMUST00000057893.5|Fzd2|ENSMUSG00000050288.5|frizzled homolog 2 (Drosophila)
mm10_v2_chr11_-_19018714_19018828	5.36762	Hoxa6	ENSMUST00000177417.1|Meis1|ENSMUSG00000020160.12|Meis homeobox 1
mm10_v2_chr7_-_37772868_37772891	5.12969	Hoxa6	ENSMUST00000176205.1|Zfp536|ENSMUSG00000043456.10|zinc finger protein 536
mm10_v2_chr9_+_120929216_120929251	5.03767	Hoxa6	ENSMUST00000130466.1|Ctnnb1|ENSMUSG00000006932.10|catenin (cadherin associated protein), beta 1
mm10_v2_chr7_-_115824699_115824752	4.99955	Hoxa6	ENSMUST00000169129.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr10_-_92164666_92164754	4.78899	Hoxa6	ENSMUST00000183123.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA) 	ENSMUST00000182033.1|Rmst|ENSMUSG00000097348.2|rhabdomyosarcoma 2 associated transcript (non-coding RNA)
mm10_v2_chr2_-_33942111_33942151	4.77764	Hoxa6	ENSMUST00000130988.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000127936.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403 	ENSMUST00000134271.1|Gm13403|ENSMUSG00000085987.1|predicted gene 13403
mm10_v2_chr17_+_75178797_75178824	4.58394	Hoxa6	ENSMUST00000112516.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1 	ENSMUST00000135447.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr12_-_34528844_34528904	4.52896	Hoxa6	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr12_+_38783455_38783482	4.29007	Hoxa6	ENSMUST00000161980.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1 	ENSMUST00000160701.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr17_+_75178911_75178961	4.21493	Hoxa6	ENSMUST00000112514.1|Ltbp1|ENSMUSG00000001870.9|latent transforming growth factor beta binding protein 1
mm10_v2_chr12_-_54986363_54986529	3.9575	Hoxa6	ENSMUST00000173433.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A 	ENSMUST00000173803.1|Gm20403|ENSMUSG00000092233.1|predicted gene 20403
mm10_v2_chr4_-_97584612_97584643	3.93024	Hoxa6	ENSMUST00000107068.2|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr4_-_97584605_97584610	3.92793	Hoxa6	ENSMUST00000107067.1|E130114P18Rik|ENSMUSG00000048747.8|RIKEN cDNA E130114P18 gene
mm10_v2_chr2_-_18048347_18048449	3.926	Hoxa6	ENSMUST00000066885.5|Skida1|ENSMUSG00000054074.9|SKI/DACH domain containing 1
mm10_v2_chr14_-_48662740_48662872	3.90937	Hoxa6	ENSMUST00000122009.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr1_+_6734827_6734874	3.87781	Hoxa6	ENSMUST00000139838.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr2_+_181767283_181767322	3.85549	Hoxa6	ENSMUST00000108757.2|Myt1|ENSMUSG00000010505.9|myelin transcription factor 1
mm10_v2_chr5_+_149678224_149678241	3.80903	Hoxa6	ENSMUST00000100404.3|B3galtl|ENSMUSG00000051950.8|beta 1,3-galactosyltransferase-like
mm10_v2_chr1_+_187997835_187997882	3.78742	Hoxa6	ENSMUST00000110938.1|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr1_+_187997821_187997834	3.75682	Hoxa6	ENSMUST00000027906.6|Esrrg|ENSMUSG00000026610.7|estrogen-related receptor gamma
mm10_v2_chr14_-_122451109_122451121	3.7013	Hoxa6	ENSMUST00000081580.2|Gm5089|ENSMUSG00000064052.2|predicted gene 5089
mm10_v2_chr13_-_83729544_83729584	3.6978	Hoxa6	ENSMUST00000181705.1|Gm26803|ENSMUSG00000097265.1|predicted gene, 26803
mm10_v2_chr5_-_106574706_106574727	3.65598	Hoxa6	ENSMUST00000131029.1|RP24-421H18.1|ENSMUSG00000099061.1|RP24-421H18.1	ENSMUST00000124394.2|RP24-421H18.1|ENSMUSG00000099061.1|RP24-421H18.1
mm10_v2_chr1_-_166002613_166002678	3.63485	Hoxa6	ENSMUST00000177358.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160908.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000027850.8|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000160260.2|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr12_-_54986328_54986342	3.57925	Hoxa6	ENSMUST00000038926.6|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr12_+_38783503_38783527	3.56206	Hoxa6	ENSMUST00000159334.1|Etv1|ENSMUSG00000004151.10|ets variant gene 1
mm10_v2_chr4_-_110287479_110287534	3.55463	Hoxa6	ENSMUST00000106598.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000102723.4|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D) 	ENSMUST00000153906.1|Elavl4|ENSMUSG00000028546.11|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)
mm10_v2_chr1_-_166002591_166002609	3.54913	Hoxa6	ENSMUST00000111429.4|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1 	ENSMUST00000176800.1|Pou2f1|ENSMUSG00000026565.12|POU domain, class 2, transcription factor 1
mm10_v2_chr2_-_116067391_116067444	3.5097	Hoxa6	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr14_+_28511344_28511405	3.46946	Hoxa6	ENSMUST00000112272.1|Wnt5a|ENSMUSG00000021994.8|wingless-related MMTV integration site 5A
mm10_v2_chr15_-_8710734_8710764	3.32421	Hoxa6	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr13_-_97747399_97747414	3.31418	Hoxa6	ENSMUST00000144993.1|5330416C01Rik|ENSMUSG00000054944.7|RIKEN cDNA 5330416C01 gene
mm10_v2_chr16_-_88056176_88056176	3.18733	Hoxa6	ENSMUST00000072256.5|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000023652.8|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1 	ENSMUST00000114137.1|Grik1|ENSMUSG00000022935.8|glutamate receptor, ionotropic, kainate 1
mm10_v2_chr9_-_42399709_42399727	3.12608	Hoxa6	ENSMUST00000160940.1|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr9_-_42399915_42399929	3.11347	Hoxa6	ENSMUST00000042190.7|Tecta|ENSMUSG00000037705.7|tectorin alpha
mm10_v2_chr2_-_79456750_79456761	3.10845	Hoxa6	ENSMUST00000041099.4|Neurod1|ENSMUSG00000034701.9|neurogenic differentiation 1
mm10_v2_chr9_-_60141220_60141246	3.06527	Hoxa6	ENSMUST00000034829.5|Thsd4|ENSMUSG00000032289.9|thrombospondin, type I, domain containing 4
mm10_v2_chr1_+_104768510_104768529	3.05973	Hoxa6	ENSMUST00000062528.8|Cdh20|ENSMUSG00000050840.8|cadherin 20
mm10_v2_chr17_-_58991343_58991375	2.89973	Hoxa6	ENSMUST00000025064.7|2610034M16Rik|ENSMUSG00000024227.8|RIKEN cDNA 2610034M16 gene
mm10_v2_chr4_-_42168603_42168603	2.89348	Hoxa6	ENSMUST00000098121.3|Gm13305|ENSMUSG00000073876.3|predicted gene 13305
mm10_v2_chr2_-_168767136_168767201	2.88653	Hoxa6	ENSMUST00000029061.5|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila) 	ENSMUST00000103074.1|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr19_+_55895508_55895511	2.80144	Hoxa6	ENSMUST00000111646.1|Tcf7l2|ENSMUSG00000024985.12|transcription factor 7 like 2, T cell specific, HMG box
mm10_v2_chr6_+_34598530_34598587	2.79383	Hoxa6	ENSMUST00000115027.1|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000115026.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr18_-_13972617_13972733	2.74375	Hoxa6	ENSMUST00000025288.7|Zfp521|ENSMUSG00000024420.8|zinc finger protein 521
mm10_v2_chr2_+_79707780_79707927	2.73277	Hoxa6	ENSMUST00000090760.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000040863.4|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C 	ENSMUST00000111780.2|Ppp1r1c|ENSMUSG00000034683.6|protein phosphatase 1, regulatory (inhibitor) subunit 1C
mm10_v2_chr17_-_51810866_51810919	2.69453	Hoxa6	ENSMUST00000176669.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr16_+_43503607_43503642	2.66219	Hoxa6	ENSMUST00000126100.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000123047.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000156981.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr3_-_52104891_52104922	2.65956	Hoxa6	ENSMUST00000121440.1|Maml3|ENSMUSG00000061143.9|mastermind like 3 (Drosophila)
mm10_v2_chr14_+_75455957_75455996	2.58611	Hoxa6	ENSMUST00000164848.1|Siah3|ENSMUSG00000091722.1|seven in absentia homolog 3 (Drosophila)
mm10_v2_chr10_-_13388753_13388774	2.58186	Hoxa6	ENSMUST00000105546.1|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr2_-_168767029_168767104	2.56193	Hoxa6	ENSMUST00000075044.3|Sall4|ENSMUSG00000027547.11|sal-like 4 (Drosophila)
mm10_v2_chr2_+_116067933_116067975	2.55771	Hoxa6	ENSMUST00000156095.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr6_+_34598500_34598529	2.44923	Hoxa6	ENSMUST00000079391.3|Cald1|ENSMUSG00000029761.10|caldesmon 1 	ENSMUST00000142512.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr7_-_73541738_73541758	2.38898	Hoxa6	ENSMUST00000169922.2|Chd2|ENSMUSG00000078671.4|chromodomain helicase DNA binding protein 2
mm10_v2_chr1_+_6730135_6730176	2.35147	Hoxa6	ENSMUST00000155921.1|St18|ENSMUSG00000033740.11|suppression of tumorigenicity 18
mm10_v2_chr14_-_48667508_48667644	2.29407	Hoxa6	ENSMUST00000144465.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000133479.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000119070.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila) 	ENSMUST00000152018.1|Otx2|ENSMUSG00000021848.9|orthodenticle homolog 2 (Drosophila)
mm10_v2_chr6_+_34709442_34709497	2.28819	Hoxa6	ENSMUST00000115021.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr2_-_28916412_28916440	2.28549	Hoxa6	ENSMUST00000050776.2|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila) 	ENSMUST00000113849.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr3_+_102010138_102010171	2.19615	Hoxa6	ENSMUST00000066187.4|Nhlh2|ENSMUSG00000048540.7|nescient helix loop helix 2
mm10_v2_chr16_+_43247278_43247309	2.14796	Hoxa6	ENSMUST00000114691.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20 	ENSMUST00000079441.6|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chrM_+_7005_7022	2.1325	Hoxa6	ENSMUST00000082405.1|mt-Co2|ENSMUSG00000064354.1|mitochondrially encoded cytochrome c oxidase II
mm10_v2_chr4_-_21685782_21685805	2.11816	Hoxa6	ENSMUST00000076206.4|Prdm13|ENSMUSG00000040478.8|PR domain containing 13
mm10_v2_chr17_+_34592248_34592329	2.08161	Hoxa6	ENSMUST00000038149.6|Pbx2|ENSMUSG00000034673.8|pre B cell leukemia homeobox 2
mm10_v2_chr7_-_49636847_49636851	2.03843	Hoxa6	ENSMUST00000032717.6|Dbx1|ENSMUSG00000030507.6|developing brain homeobox 1
mm10_v2_chr15_-_8710409_8710498	2.02407	Hoxa6	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr10_-_13388830_13388970	1.96293	Hoxa6	ENSMUST00000079698.5|Phactr2|ENSMUSG00000062866.9|phosphatase and actin regulator 2
mm10_v2_chr3_+_41563356_41563392	1.96223	Hoxa6	ENSMUST00000163764.1|Phf17|ENSMUSG00000025764.8|PHD finger protein 17
mm10_v2_chr4_-_82885148_82885148	1.90153	Hoxa6	ENSMUST00000048430.3|Cer1|ENSMUSG00000038192.5|cerberus 1 homolog (Xenopus laevis)
mm10_v2_chr5_+_42067960_42067960	1.8956	Hoxa6	ENSMUST00000087332.4|Gm16223|ENSMUSG00000067285.4|predicted gene 16223
mm10_v2_chr1_+_137928100_137928170	1.88834	Hoxa6	ENSMUST00000054333.2|A130050O07Rik|ENSMUSG00000051480.2|RIKEN cDNA A130050O07 gene
mm10_v2_chr7_-_109170308_109170308	1.87122	Hoxa6	ENSMUST00000036992.7|Lmo1|ENSMUSG00000036111.7|LIM domain only 1
mm10_v2_chr4_-_91399984_91400007	1.83258	Hoxa6	ENSMUST00000102799.3|Elavl2|ENSMUSG00000008489.12|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
mm10_v2_chr4_-_82850721_82850814	1.7824	Hoxa6	ENSMUST00000139401.1|Zdhhc21|ENSMUSG00000028403.9|zinc finger, DHHC domain containing 21
mm10_v2_chr5_-_123141067_123141094	1.75308	Hoxa6	ENSMUST00000162697.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000160321.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526 	ENSMUST00000159637.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr1_-_87394721_87394734	1.74668	Hoxa6	ENSMUST00000113212.3|Kcnj13|ENSMUSG00000079436.3|potassium inwardly-rectifying channel, subfamily J, member 13
mm10_v2_chr2_-_58052832_58052870	1.73512	Hoxa6	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr6_+_34709610_34709635	1.72113	Hoxa6	ENSMUST00000031775.6|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr19_-_53371766_53371766	1.68724	Hoxa6	ENSMUST00000086887.1|Gm10197|ENSMUSG00000067085.1|predicted gene 10197
mm10_v2_chr2_+_72297895_72297912	1.66463	Hoxa6	ENSMUST00000144111.1|Zak|ENSMUSG00000004085.8|sterile alpha motif and leucine zipper containing kinase AZK
mm10_v2_chr16_+_43235856_43235880	1.60548	Hoxa6	ENSMUST00000146708.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr2_-_64097994_64098023	1.53352	Hoxa6	ENSMUST00000131615.2|Fign|ENSMUSG00000075324.7|fidgetin
mm10_v2_chr2_-_63184253_63184292	1.48953	Hoxa6	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr10_+_42860348_42860377	1.43211	Hoxa6	ENSMUST00000063063.7|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr2_-_170194033_170194064	1.37771	Hoxa6	ENSMUST00000180625.1|Gm17619|ENSMUSG00000097514.1|predicted gene, 17619
mm10_v2_chr7_-_84679346_84679401	1.34973	Hoxa6	ENSMUST00000069537.2|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6 	ENSMUST00000178385.1|Zfand6|ENSMUSG00000030629.8|zinc finger, AN1-type domain 6
mm10_v2_chr9_-_119825456_119825456	1.34697	Hoxa6	ENSMUST00000070617.7|Scn11a|ENSMUSG00000034115.9|sodium channel, voltage-gated, type XI, alpha
mm10_v2_chr3_-_138131356_138131381	1.34477	Hoxa6	ENSMUST00000029805.8|Mttp|ENSMUSG00000028158.8|microsomal triglyceride transfer protein
mm10_v2_chr4_-_92191749_92191749	1.32136	Hoxa6	ENSMUST00000123179.1|Gm12666|ENSMUSG00000066107.6|predicted gene 12666
mm10_v2_chr14_-_46390501_46390550	1.31757	Hoxa6	ENSMUST00000100676.2|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr8_-_67974567_67974596	1.31182	Hoxa6	ENSMUST00000098696.3|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000038959.9|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3 	ENSMUST00000093469.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr10_-_45470201_45470260	1.29066	Hoxa6	ENSMUST00000079390.6|Lin28b|ENSMUSG00000063804.7|lin-28 homolog B (C. elegans)
mm10_v2_chr10_+_42860648_42860676	1.27838	Hoxa6	ENSMUST00000105495.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr13_-_78196373_78196440	1.27333	Hoxa6	ENSMUST00000125176.2|Nr2f1|ENSMUSG00000069171.7|nuclear receptor subfamily 2, group F, member 1
mm10_v2_chr16_-_64786321_64786321	1.23736	Hoxa6	ENSMUST00000052588.4|Zfp654|ENSMUSG00000047141.4|zinc finger protein 654
mm10_v2_chr4_+_128688726_128688795	1.23318	Hoxa6	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr13_+_44840686_44840697	1.22555	Hoxa6	ENSMUST00000173906.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr10_+_42860776_42860810	1.21907	Hoxa6	ENSMUST00000105494.1|Scml4|ENSMUSG00000044770.8|sex comb on midleg-like 4 (Drosophila)
mm10_v2_chr3_+_130180882_130180899	1.19989	Hoxa6	ENSMUST00000106353.1|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1 	ENSMUST00000080335.4|Col25a1|ENSMUSG00000058897.11|collagen, type XXV, alpha 1
mm10_v2_chr2_-_72986716_72986716	1.15826	Hoxa6	ENSMUST00000112062.1|Gm11084|ENSMUSG00000079286.1|predicted gene 11084
mm10_v2_chr18_+_42394539_42394575	1.1464	Hoxa6	ENSMUST00000025374.3|Pou4f3|ENSMUSG00000024497.3|POU domain, class 4, transcription factor 3
mm10_v2_chr9_+_46998931_46998931	1.14489	Hoxa6	ENSMUST00000178065.1|Gm4791|ENSMUSG00000094893.1|predicted gene 4791
mm10_v2_chr14_-_46390576_46390669	1.11836	Hoxa6	ENSMUST00000074077.5|Bmp4|ENSMUSG00000021835.8|bone morphogenetic protein 4
mm10_v2_chr3_+_76075583_76075583	1.09888	Hoxa6	ENSMUST00000160261.1|Fstl5|ENSMUSG00000034098.8|follistatin-like 5
mm10_v2_chr1_+_19103022_19103043	1.09668	Hoxa6	ENSMUST00000037294.7|Tfap2d|ENSMUSG00000042596.7|transcription factor AP-2, delta
mm10_v2_chr5_+_115235836_115235836	1.07466	Hoxa6	ENSMUST00000081497.6|Pop5|ENSMUSG00000060152.8|processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
mm10_v2_chr5_+_34989473_34989549	1.00003	Hoxa6	ENSMUST00000114284.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12 	ENSMUST00000114285.1|Rgs12|ENSMUSG00000029101.8|regulator of G-protein signaling 12
mm10_v2_chr2_+_132847719_132847743	0.999961	Hoxa6	ENSMUST00000124836.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1 	ENSMUST00000154160.1|Crls1|ENSMUSG00000027357.10|cardiolipin synthase 1
mm10_v2_chr2_-_28916668_28916668	0.989347	Hoxa6	ENSMUST00000113847.1|Barhl1|ENSMUSG00000026805.8|BarH-like 1 (Drosophila)
mm10_v2_chr5_+_13399309_13399382	0.955491	Hoxa6	ENSMUST00000030714.7|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A 	ENSMUST00000141968.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr7_+_131542867_131542867	0.900755	Hoxa6	ENSMUST00000046093.5|Hmx3|ENSMUSG00000040148.5|H6 homeobox 3
mm10_v2_chr8_-_67818284_67818320	0.899869	Hoxa6	ENSMUST00000120071.1|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr8_-_47352348_47352367	0.875478	Hoxa6	ENSMUST00000110367.2|Stox2|ENSMUSG00000038143.8|storkhead box 2
mm10_v2_chr17_+_43952999_43953063	0.866257	Hoxa6	ENSMUST00000177857.1|Rcan2|ENSMUSG00000039601.9|regulator of calcineurin 2
mm10_v2_chr12_-_73047179_73047179	0.828759	Hoxa6	ENSMUST00000050029.7|Six1|ENSMUSG00000051367.8|sine oculis-related homeobox 1
mm10_v2_chr16_-_95459245_95459384	0.827708	Hoxa6	ENSMUST00000176345.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000121809.2|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000118113.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related 	ENSMUST00000122199.1|Erg|ENSMUSG00000040732.12|avian erythroblastosis virus E-26 (v-ets) oncogene related
mm10_v2_chr13_+_80883403_80883422	0.81691	Hoxa6	ENSMUST00000099356.2|Arrdc3|ENSMUSG00000074794.3|arrestin domain containing 3
mm10_v2_chr16_+_43364145_43364204	0.8117	Hoxa6	ENSMUST00000148775.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr16_+_43363855_43363888	0.797512	Hoxa6	ENSMUST00000156367.1|Zbtb20|ENSMUSG00000022708.10|zinc finger and BTB domain containing 20
mm10_v2_chr7_+_49910112_49910146	0.778925	Hoxa6	ENSMUST00000056442.5|Slc6a5|ENSMUSG00000039728.8|solute carrier family 6 (neurotransmitter transporter, glycine), member 5
mm10_v2_chr4_+_107968332_107968424	0.773901	Hoxa6	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr1_+_19212054_19212106	0.74056	Hoxa6	ENSMUST00000064976.4|Tfap2b|ENSMUSG00000025927.7|transcription factor AP-2 beta
mm10_v2_chr13_-_53473074_53473074	0.735053	Hoxa6	ENSMUST00000021922.8|Msx2|ENSMUSG00000021469.8|msh homeobox 2
mm10_v2_chrM_+_2743_2761	0.697612	Hoxa6	ENSMUST00000082392.1|mt-Nd1|ENSMUSG00000064341.1|mitochondrially encoded NADH dehydrogenase 1
mm10_v2_chr2_-_63184170_63184195	0.646681	Hoxa6	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr11_-_33203588_33203599	0.6293	Hoxa6	ENSMUST00000037746.6|Tlx3|ENSMUSG00000040610.6|T cell leukemia, homeobox 3
mm10_v2_chr16_-_56024628_56024668	0.618947	Hoxa6	ENSMUST00000119981.1|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein 	ENSMUST00000096021.3|Pcnp|ENSMUSG00000071533.5|PEST proteolytic signal containing nuclear protein
mm10_v2_chr8_-_67818218_67818269	0.603102	Hoxa6	ENSMUST00000059374.4|Psd3|ENSMUSG00000030465.12|pleckstrin and Sec7 domain containing 3
mm10_v2_chr13_-_18382041_18382041	0.60261	Hoxa6	ENSMUST00000139064.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2 	ENSMUST00000175703.2|Pou6f2|ENSMUSG00000009734.11|POU domain, class 6, transcription factor 2
mm10_v2_chr2_-_168207063_168207142	0.558658	Hoxa6	ENSMUST00000088001.5|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr12_-_56613270_56613291	0.558283	Hoxa6	ENSMUST00000072631.5|Nkx2-9|ENSMUSG00000058669.7|NK2 homeobox 9
mm10_v2_chr9_-_32541589_32541602	0.531455	Hoxa6	ENSMUST00000016231.7|Fli1|ENSMUSG00000016087.7|Friend leukemia integration 1
mm10_v2_chr4_-_82705735_82705754	0.500948	Hoxa6	ENSMUST00000155821.1|Nfib|ENSMUSG00000008575.11|nuclear factor I/B
mm10_v2_chr6_-_124840192_124840275	0.479904	Hoxa6	ENSMUST00000024206.5|Gnb3|ENSMUSG00000023439.5|guanine nucleotide binding protein (G protein), beta 3
mm10_v2_chr18_-_47368446_47368486	0.469592	Hoxa6	ENSMUST00000076043.6|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A 	ENSMUST00000135790.1|Sema6a|ENSMUSG00000019647.10|sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A
mm10_v2_chr10_+_87859062_87859094	0.4678	Hoxa6	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr15_+_79690869_79690905	0.433337	Hoxa6	ENSMUST00000046463.8|Gtpbp1|ENSMUSG00000042535.8|GTP binding protein 1
mm10_v2_chr2_+_26591423_26591435	0.428467	Hoxa6	ENSMUST00000152988.2|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7 	ENSMUST00000149789.1|Egfl7|ENSMUSG00000026921.12|EGF-like domain 7
mm10_v2_chr11_+_100320596_100320708	0.417978	Hoxa6	ENSMUST00000152521.1|Eif1|ENSMUSG00000035530.7|eukaryotic translation initiation factor 1
mm10_v2_chr11_+_77930800_77931012	0.413229	Hoxa6	ENSMUST00000093995.3|Sez6|ENSMUSG00000000632.7|seizure related gene 6 	ENSMUST00000000646.7|Sez6|ENSMUSG00000000632.7|seizure related gene 6
mm10_v2_chr2_+_120476911_120476976	0.393179	Hoxa6	ENSMUST00000110716.1|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000028748.6|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000090028.5|Capn3|ENSMUSG00000079110.5|calpain 3 	ENSMUST00000110719.2|Capn3|ENSMUSG00000079110.5|calpain 3
mm10_v2_chr13_-_40730416_40730429	0.3543	Hoxa6	ENSMUST00000021787.5|Tfap2a|ENSMUSG00000021359.9|transcription factor AP-2, alpha
mm10_v2_chr10_+_87859255_87859266	0.350391	Hoxa6	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr18_-_54990124_54990180	0.330006	Hoxa6	ENSMUST00000064763.5|Zfp608|ENSMUSG00000052713.8|zinc finger protein 608
mm10_v2_chr5_+_13398688_13398726	0.321129	Hoxa6	ENSMUST00000125629.1|Sema3a|ENSMUSG00000028883.11|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
mm10_v2_chr11_+_94044331_94044365	0.299281	Hoxa6	ENSMUST00000024979.8|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr9_-_105521147_105521265	0.270029	Hoxa6	ENSMUST00000176770.1|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering 	ENSMUST00000085133.6|Atp2c1|ENSMUSG00000032570.10|ATPase, Ca++-sequestering
mm10_v2_chr1_-_30863256_30863256	0.258007	Hoxa6	ENSMUST00000088310.3|Phf3|ENSMUSG00000048874.9|PHD finger protein 3
mm10_v2_chr8_-_105568298_105568298	0.239543	Hoxa6	ENSMUST00000005849.5|Agrp|ENSMUSG00000005705.5|agouti related protein
mm10_v2_chr10_-_53638269_53638269	0.233197	Hoxa6	ENSMUST00000164393.1|Fam184a|ENSMUSG00000019856.7|family with sequence similarity 184, member A
mm10_v2_chrM_+_10167_10167	0.216697	Hoxa6	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chrM_+_8600_8616	0.207867	Hoxa6	ENSMUST00000082409.1|mt-Co3|ENSMUSG00000064358.1|mitochondrially encoded cytochrome c oxidase III
mm10_v2_chrM_+_7759_7927	0.178105	Hoxa6	ENSMUST00000082407.1|mt-Atp8|ENSMUSG00000064356.3|mitochondrially encoded ATP synthase 8 	ENSMUST00000082408.1|mt-Atp6|ENSMUSG00000064357.1|mitochondrially encoded ATP synthase 6
mm10_v2_chr3_-_131344892_131344940	0.13595	Hoxa6	ENSMUST00000090246.4|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2 	ENSMUST00000126569.1|Sgms2|ENSMUSG00000050931.6|sphingomyelin synthase 2
mm10_v2_chr2_-_168206875_168206922	0.118014	Hoxa6	ENSMUST00000057793.4|Adnp|ENSMUSG00000051149.9|activity-dependent neuroprotective protein
mm10_v2_chr18_-_23041641_23041671	0.11457	Hoxa6	ENSMUST00000097651.3|Nol4|ENSMUSG00000041923.9|nucleolar protein 4
mm10_v2_chr12_+_21417872_21417911	0.112255	Hoxa6	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr18_+_69593361_69593450	0.0785876	Hoxa6	ENSMUST00000114978.2|Tcf4|ENSMUSG00000053477.9|transcription factor 4 	ENSMUST00000114977.1|Tcf4|ENSMUSG00000053477.9|transcription factor 4
mm10_v2_chr5_-_123140135_123140289	0.0651685	Hoxa6	ENSMUST00000160099.1|AI480526|ENSMUSG00000090086.1|expressed sequence AI480526
mm10_v2_chr18_+_54990280_54990315	0.0636289	Hoxa6	ENSMUST00000181538.1|Gm4221|ENSMUSG00000096948.1|predicted gene 4221
mm10_v2_chr11_+_94044241_94044273	0.043666	Hoxa6	ENSMUST00000103168.3|Spag9|ENSMUSG00000020859.10|sperm associated antigen 9
mm10_v2_chr3_+_84952146_84952186	0.0330598	Hoxa6	ENSMUST00000029727.7|Fbxw7|ENSMUSG00000028086.8|F-box and WD-40 domain protein 7
mm10_v2_chr10_-_116549101_116549163	0.0146674	Hoxa6	ENSMUST00000164088.1|Cnot2|ENSMUSG00000020166.8|CCR4-NOT transcription complex, subunit 2
mm10_v2_chr11_+_116657106_116657117	0.00740594	Hoxa6	ENSMUST00000116318.2|Gm11744|ENSMUSG00000075410.6|predicted gene 11744
mm10_v2_chr7_-_70366735_70366771	0.00739922	Hoxa6	ENSMUST00000089565.5|Nr2f2|ENSMUSG00000030551.7|nuclear receptor subfamily 2, group F, member 2
