mm10_v2_chr17_-_45659312_45659335	3.29148	Hoxd1	ENSMUST00000120717.1|Capn11|ENSMUSG00000058626.10|calpain 11
mm10_v2_chr2_-_20943413_20943424	3.1895	Hoxd1	ENSMUST00000140230.1|Arhgap21|ENSMUSG00000036591.9|Rho GTPase activating protein 21
mm10_v2_chr3_-_85722474_85722474	3.12555	Hoxd1	ENSMUST00000119077.1|Fam160a1|ENSMUSG00000051000.11|family with sequence similarity 160, member A1
mm10_v2_chr5_-_62766153_62766246	2.4864	Hoxd1	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chrX_-_143933089_143933142	2.44201	Hoxd1	ENSMUST00000087313.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr10_-_110000219_110000219	2.31831	Hoxd1	ENSMUST00000032719.7|Nav3|ENSMUSG00000020181.9|neuron navigator 3
mm10_v2_chr5_+_107497762_107497802	2.30549	Hoxd1	ENSMUST00000152474.1|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene 	ENSMUST00000060553.7|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr2_+_150323702_150323702	1.88433	Hoxd1	ENSMUST00000133235.2|Gm10130|ENSMUSG00000095315.1|predicted gene 10130
mm10_v2_chr2_+_3424123_3424207	1.87988	Hoxd1	ENSMUST00000061852.5|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000100463.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000102988.3|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae) 	ENSMUST00000115066.1|Dclre1c|ENSMUSG00000026648.12|DNA cross-link repair 1C, PSO2 homolog (S. cerevisiae)
mm10_v2_chr5_+_134932351_134932406	1.86624	Hoxd1	ENSMUST00000047196.7|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111221.2|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111219.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000068617.5|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000111218.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human) 	ENSMUST00000136246.1|Wbscr27|ENSMUSG00000040557.8|Williams Beuren syndrome chromosome region 27 (human)
mm10_v2_chr17_-_36032682_36032855	1.86598	Hoxd1	ENSMUST00000102678.4|H2-T23|ENSMUSG00000067212.8|histocompatibility 2, T region locus 23
mm10_v2_chr5_+_107497718_107497759	1.79778	Hoxd1	ENSMUST00000112671.2|A830010M20Rik|ENSMUSG00000044060.11|RIKEN cDNA A830010M20 gene
mm10_v2_chr13_-_105054895_105054930	1.73659	Hoxd1	ENSMUST00000063551.5|Rgs7bp|ENSMUSG00000021719.8|regulator of G-protein signalling 7 binding protein
mm10_v2_chr17_+_88440711_88440741	1.70061	Hoxd1	ENSMUST00000112238.2|Foxn2|ENSMUSG00000034998.12|forkhead box N2 	ENSMUST00000155640.1|Foxn2|ENSMUSG00000034998.12|forkhead box N2
mm10_v2_chr16_+_11406618_11406675	1.66408	Hoxd1	ENSMUST00000122168.1|Snx29|ENSMUSG00000071669.8|sorting nexin 29
mm10_v2_chr2_+_69897255_69897303	1.66052	Hoxd1	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr1_-_158356258_158356313	1.65394	Hoxd1	ENSMUST00000004133.8|Brinp2|ENSMUSG00000004031.8|bone morphogenic protein/retinoic acid inducible neural-specific 2
mm10_v2_chr2_+_116067213_116067250	1.64712	Hoxd1	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chr12_+_52699297_52699411	1.53424	Hoxd1	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chrM_+_9870_9885	1.49144	Hoxd1	ENSMUST00000084013.1|mt-Nd4l|ENSMUSG00000065947.3|mitochondrially encoded NADH dehydrogenase 4L
mm10_v2_chr1_+_65186727_65186750	1.43941	Hoxd1	ENSMUST00000097707.4|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing 	ENSMUST00000081154.7|Pikfyve|ENSMUSG00000025949.9|phosphoinositide kinase, FYVE finger containing
mm10_v2_chr8_-_41041828_41041866	1.39997	Hoxd1	ENSMUST00000051379.7|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr9_-_123851855_123851912	1.3681	Hoxd1	ENSMUST00000184082.1|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1 	ENSMUST00000167595.2|Fyco1|ENSMUSG00000025241.9|FYVE and coiled-coil domain containing 1
mm10_v2_chr16_-_55934845_55934868	1.36753	Hoxd1	ENSMUST00000121129.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000023270.7|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr16_-_55934797_55934840	1.3602	Hoxd1	ENSMUST00000122280.1|Cep97|ENSMUSG00000022604.12|centrosomal protein 97 	ENSMUST00000121703.2|Cep97|ENSMUSG00000022604.12|centrosomal protein 97
mm10_v2_chr9_-_15301555_15301607	1.34298	Hoxd1	ENSMUST00000034414.8|4931406C07Rik|ENSMUSG00000031938.8|RIKEN cDNA 4931406C07 gene
mm10_v2_chr12_-_98577940_98578046	1.32857	Hoxd1	ENSMUST00000110113.1|Kcnk10|ENSMUSG00000033854.9|potassium channel, subfamily K, member 10
mm10_v2_chr9_-_55919605_55919605	1.32807	Hoxd1	ENSMUST00000037408.8|Scaper|ENSMUSG00000034007.9|S phase cyclin A-associated protein in the ER
mm10_v2_chrM_+_10167_10167	1.30996	Hoxd1	ENSMUST00000082414.1|mt-Nd4|ENSMUSG00000064363.1|mitochondrially encoded NADH dehydrogenase 4
mm10_v2_chr1_-_24612700_24612700	1.30404	Hoxd1	ENSMUST00000088336.1|Gm10222|ENSMUSG00000067736.1|predicted gene 10222
mm10_v2_chr5_-_123012874_123012880	1.2857	Hoxd1	ENSMUST00000172729.1|Kdm2b|ENSMUSG00000029475.11|lysine (K)-specific demethylase 2B
mm10_v2_chr2_-_177267036_177267036	1.28358	Hoxd1	ENSMUST00000108963.1|Gm14409|ENSMUSG00000078869.2|predicted gene 14409
mm10_v2_chr2_-_116067391_116067444	1.2424	Hoxd1	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr2_+_121956651_121956664	1.2386	Hoxd1	ENSMUST00000110574.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr5_-_106926245_106926321	1.2076	Hoxd1	ENSMUST00000117588.1|Hfm1|ENSMUSG00000043410.10|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)
mm10_v2_chr3_-_116712644_116712655	1.17658	Hoxd1	ENSMUST00000029569.2|Slc35a3|ENSMUSG00000027957.7|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3
mm10_v2_chr7_+_127511976_127512075	1.17636	Hoxd1	ENSMUST00000098025.4|Srcap|ENSMUSG00000053877.6|Snf2-related CREBBP activator protein
mm10_v2_chrX_-_143933204_143933311	1.17458	Hoxd1	ENSMUST00000112851.1|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000112856.2|Dcx|ENSMUSG00000031285.8|doublecortin 	ENSMUST00000033642.3|Dcx|ENSMUSG00000031285.8|doublecortin
mm10_v2_chr11_+_35121126_35121224	1.16929	Hoxd1	ENSMUST00000069837.3|Slit3|ENSMUSG00000056427.4|slit homolog 3 (Drosophila)
mm10_v2_chr8_-_122915987_122915987	1.14856	Hoxd1	ENSMUST00000098333.4|Ankrd11|ENSMUSG00000035569.10|ankyrin repeat domain 11
mm10_v2_chr18_+_37355271_37355271	1.13072	Hoxd1	ENSMUST00000051163.1|Pcdhb8|ENSMUSG00000045876.3|protocadherin beta 8
mm10_v2_chr5_-_70842617_70842617	1.12933	Hoxd1	ENSMUST00000031119.1|Gabrg1|ENSMUSG00000001260.6|gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1
mm10_v2_chr13_+_83732438_83732566	1.09722	Hoxd1	ENSMUST00000182701.1|C130071C03Rik|ENSMUSG00000050334.6|RIKEN cDNA C130071C03 gene
mm10_v2_chr2_-_156392829_156392993	1.08473	Hoxd1	ENSMUST00000088578.2|2900097C17Rik|ENSMUSG00000067833.2|RIKEN cDNA 2900097C17 gene
mm10_v2_chr2_+_170731807_170731920	1.07596	Hoxd1	ENSMUST00000029075.4|Dok5|ENSMUSG00000027560.4|docking protein 5
mm10_v2_chr9_-_85749308_85749356	1.07315	Hoxd1	ENSMUST00000039213.8|Ibtk|ENSMUSG00000035941.9|inhibitor of Bruton agammaglobulinemia tyrosine kinase
mm10_v2_chr6_-_57535422_57535447	1.03666	Hoxd1	ENSMUST00000042766.3|Ppm1k|ENSMUSG00000037826.3|protein phosphatase 1K (PP2C domain containing)
mm10_v2_chr13_+_42866247_42866301	1.02012	Hoxd1	ENSMUST00000131942.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr10_+_90071095_90071117	0.999095	Hoxd1	ENSMUST00000183109.1|Anks1b|ENSMUSG00000058589.8|ankyrin repeat and sterile alpha motif domain containing 1B
mm10_v2_chr13_+_44121167_44121322	0.987491	Hoxd1	ENSMUST00000163056.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083 	ENSMUST00000159595.1|Gm5083|ENSMUSG00000089815.1|predicted gene 5083
mm10_v2_chr7_+_29816061_29816153	0.967116	Hoxd1	ENSMUST00000032796.6|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790 	ENSMUST00000178162.1|Zfp790|ENSMUSG00000011427.9|zinc finger protein 790
mm10_v2_chr2_+_69897220_69897247	0.953484	Hoxd1	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr8_-_105966038_105966120	0.930725	Hoxd1	ENSMUST00000116429.2|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4 	ENSMUST00000034370.9|Slc12a4|ENSMUSG00000017765.10|solute carrier family 12, member 4
mm10_v2_chr1_-_33814516_33814576	0.929831	Hoxd1	ENSMUST00000044455.5|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451 	ENSMUST00000115167.1|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr9_-_107872403_107872422	0.905433	Hoxd1	ENSMUST00000183035.1|Rbm6|ENSMUSG00000032582.8|RNA binding motif protein 6
mm10_v2_chr17_-_32822200_32822200	0.888834	Hoxd1	ENSMUST00000179695.1|Zfp799|ENSMUSG00000095253.1|zinc finger protein 799
mm10_v2_chr6_+_72097561_72097630	0.881186	Hoxd1	ENSMUST00000069994.4|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5 	ENSMUST00000114112.1|St3gal5|ENSMUSG00000056091.6|ST3 beta-galactoside alpha-2,3-sialyltransferase 5
mm10_v2_chr2_+_121956411_121956480	0.868095	Hoxd1	ENSMUST00000110578.1|Ctdspl2|ENSMUSG00000033411.10|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
mm10_v2_chr8_+_113635787_113635842	0.838365	Hoxd1	ENSMUST00000035777.8|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr8_+_113635550_113635597	0.812175	Hoxd1	ENSMUST00000179926.1|Mon1b|ENSMUSG00000078908.3|MON1 homolog b (yeast)
mm10_v2_chr11_-_107337556_107337637	0.805757	Hoxd1	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr15_-_8710409_8710498	0.791545	Hoxd1	ENSMUST00000157065.1|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr16_-_16600533_16600576	0.786831	Hoxd1	ENSMUST00000159542.1|Fgd4|ENSMUSG00000022788.10|FYVE, RhoGEF and PH domain containing 4
mm10_v2_chr19_+_8802486_8802530	0.765202	Hoxd1	ENSMUST00000172175.1|Zbtb3|ENSMUSG00000071661.6|zinc finger and BTB domain containing 3
mm10_v2_chr9_+_72958785_72958850	0.757554	Hoxd1	ENSMUST00000098567.2|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human) 	ENSMUST00000034734.8|Dyx1c1|ENSMUSG00000092192.1|dyslexia susceptibility 1 candidate 1 homolog (human)
mm10_v2_chr13_-_67332525_67332553	0.751221	Hoxd1	ENSMUST00000168892.1|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595 	ENSMUST00000109735.2|Zfp595|ENSMUSG00000057842.7|zinc finger protein 595
mm10_v2_chr4_+_103143052_103143071	0.747688	Hoxd1	ENSMUST00000106855.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr15_+_25773985_25774042	0.744503	Hoxd1	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr4_+_146610961_146610961	0.737317	Hoxd1	ENSMUST00000130825.1|Gm13248|ENSMUSG00000063245.5|predicted gene 13248
mm10_v2_chr6_+_34029421_34029456	0.696832	Hoxd1	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr12_+_80644212_80644265	0.678809	Hoxd1	ENSMUST00000085245.5|Slc39a9|ENSMUSG00000048833.8|solute carrier family 39 (zinc transporter), member 9
mm10_v2_chr7_+_79273201_79273270	0.668259	Hoxd1	ENSMUST00000037315.6|Abhd2|ENSMUSG00000039202.6|abhydrolase domain containing 2
mm10_v2_chrX_+_16619698_16619758	0.66468	Hoxd1	ENSMUST00000026013.5|Maoa|ENSMUSG00000025037.6|monoamine oxidase A
mm10_v2_chr2_+_65620829_65620857	0.661417	Hoxd1	ENSMUST00000028377.7|Scn2a1|ENSMUSG00000075318.6|sodium channel, voltage-gated, type II, alpha 1
mm10_v2_chr6_+_149582012_149582012	0.657446	Hoxd1	ENSMUST00000144085.2|Gm21814|ENSMUSG00000096299.1|predicted gene, 21814
mm10_v2_chr17_+_34931253_34931343	0.653256	Hoxd1	ENSMUST00000007253.5|Neu1|ENSMUSG00000007038.5|neuraminidase 1
mm10_v2_chr7_-_6730412_6730431	0.648637	Hoxd1	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr8_-_54724474_54724504	0.638256	Hoxd1	ENSMUST00000175915.1|Wdr17|ENSMUSG00000039375.10|WD repeat domain 17
mm10_v2_chr5_+_29195983_29196032	0.634144	Hoxd1	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr3_+_94837702_94837723	0.631523	Hoxd1	ENSMUST00000107266.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000042402.5|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain 	ENSMUST00000107269.1|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr2_-_45117349_45117395	0.607135	Hoxd1	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr7_+_130774069_130774185	0.605769	Hoxd1	ENSMUST00000048453.5|Btbd16|ENSMUSG00000040298.5|BTB (POZ) domain containing 16
mm10_v2_chr14_+_48446128_48446276	0.602764	Hoxd1	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr12_+_72441852_72441866	0.594703	Hoxd1	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr4_+_147132038_147132038	0.593091	Hoxd1	ENSMUST00000084149.3|Gm13139|ENSMUSG00000067916.3|predicted gene 13139
mm10_v2_chr18_+_31609512_31609512	0.588645	Hoxd1	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr15_+_98092569_98092603	0.58586	Hoxd1	ENSMUST00000163507.1|Pfkm|ENSMUSG00000033065.7|phosphofructokinase, muscle
mm10_v2_chr2_+_109917639_109917656	0.580659	Hoxd1	ENSMUST00000046548.7|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4 	ENSMUST00000111037.2|Lgr4|ENSMUSG00000050199.7|leucine-rich repeat-containing G protein-coupled receptor 4
mm10_v2_chr14_-_104522615_104522707	0.568438	Hoxd1	ENSMUST00000022716.2|Rnf219|ENSMUSG00000022120.3|ring finger protein 219
mm10_v2_chr10_-_117148474_117148510	0.563173	Hoxd1	ENSMUST00000020381.3|Frs2|ENSMUSG00000020170.3|fibroblast growth factor receptor substrate 2
mm10_v2_chr15_+_82256023_82256130	0.553167	Hoxd1	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chr4_-_132075250_132075292	0.543221	Hoxd1	ENSMUST00000105970.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1 	ENSMUST00000105975.1|Epb4.1|ENSMUSG00000028906.9|erythrocyte protein band 4.1
mm10_v2_chr19_-_32196393_32196428	0.524088	Hoxd1	ENSMUST00000151822.1|Sgms1|ENSMUSG00000040451.11|sphingomyelin synthase 1
mm10_v2_chr10_-_120112946_120112987	0.519776	Hoxd1	ENSMUST00000020449.5|Helb|ENSMUSG00000020228.5|helicase (DNA) B
mm10_v2_chr14_-_75754475_75754563	0.519386	Hoxd1	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chr12_+_72441933_72441970	0.48789	Hoxd1	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr7_-_44929410_44929521	0.480683	Hoxd1	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr18_+_59062462_59062538	0.47019	Hoxd1	ENSMUST00000058633.2|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000175897.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000118510.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene 	ENSMUST00000175830.1|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene
mm10_v2_chr5_-_118244861_118245116	0.461778	Hoxd1	ENSMUST00000117177.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000133372.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000154786.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2 	ENSMUST00000121369.1|Rnft2|ENSMUSG00000032850.10|ring finger protein, transmembrane 2
mm10_v2_chrX_-_75578188_75578247	0.461375	Hoxd1	ENSMUST00000033545.5|Rab39b|ENSMUSG00000031202.5|RAB39B, member RAS oncogene family
mm10_v2_chr2_+_37516618_37516634	0.451138	Hoxd1	ENSMUST00000065441.6|Gpr21|ENSMUSG00000053164.6|G protein-coupled receptor 21
mm10_v2_chr14_+_25980039_25980039	0.443444	Hoxd1	ENSMUST00000173155.1|Duxbl1|ENSMUSG00000048502.8|double homeobox B-like 1
mm10_v2_chr18_-_60273267_60273267	0.425955	Hoxd1	ENSMUST00000090260.4|Gm4841|ENSMUSG00000068606.5|predicted gene 4841
mm10_v2_chr11_+_32283511_32283511	0.423419	Hoxd1	ENSMUST00000093209.3|Hba-a1|ENSMUSG00000069919.7|hemoglobin alpha, adult chain 1
mm10_v2_chr16_+_52031549_52031570	0.415812	Hoxd1	ENSMUST00000114471.1|Cblb|ENSMUSG00000022637.10|Casitas B-lineage lymphoma b
mm10_v2_chr12_+_16653470_16653486	0.414901	Hoxd1	ENSMUST00000111064.1|Ntsr2|ENSMUSG00000020591.10|neurotensin receptor 2
mm10_v2_chrX_+_9885622_9885622	0.403903	Hoxd1	ENSMUST00000067529.2|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5 	ENSMUST00000086165.3|Sytl5|ENSMUSG00000054453.5|synaptotagmin-like 5
mm10_v2_chr17_-_32886083_32886083	0.399429	Hoxd1	ENSMUST00000178401.1|Zfp870|ENSMUSG00000095325.1|zinc finger protein 870
mm10_v2_chr14_+_26259109_26259109	0.394421	Hoxd1	ENSMUST00000174494.1|Duxbl3|ENSMUSG00000072672.4|double homeobox B-like 3
mm10_v2_chr11_-_121388186_121388267	0.390259	Hoxd1	ENSMUST00000106107.2|Rab40b|ENSMUSG00000025170.7|Rab40b, member RAS oncogene family
mm10_v2_chr15_+_98571004_98571026	0.374152	Hoxd1	ENSMUST00000023728.6|4930415O20Rik|ENSMUSG00000022993.6|RIKEN cDNA 4930415O20 gene
mm10_v2_chr9_-_86880647_86880659	0.373102	Hoxd1	ENSMUST00000167014.1|Snap91|ENSMUSG00000033419.9|synaptosomal-associated protein 91
mm10_v2_chr2_+_131491764_131491943	0.372546	Hoxd1	ENSMUST00000028806.5|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110179.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110189.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110182.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110183.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110186.2|Smox|ENSMUSG00000027333.12|spermine oxidase 	ENSMUST00000110188.1|Smox|ENSMUSG00000027333.12|spermine oxidase
mm10_v2_chr3_+_94837533_94837567	0.368072	Hoxd1	ENSMUST00000107270.2|Pogz|ENSMUSG00000038902.8|pogo transposable element with ZNF domain
mm10_v2_chr5_-_63968867_63968905	0.366596	Hoxd1	ENSMUST00000154169.1|Rell1|ENSMUSG00000047881.8|RELT-like 1
mm10_v2_chr17_-_57031468_57031538	0.350214	Hoxd1	ENSMUST00000007814.8|Khsrp|ENSMUSG00000007670.9|KH-type splicing regulatory protein
mm10_v2_chr12_-_55014329_55014353	0.350075	Hoxd1	ENSMUST00000172875.1|Baz1a|ENSMUSG00000035021.7|bromodomain adjacent to zinc finger domain 1A
mm10_v2_chr14_+_69347587_69347587	0.342715	Hoxd1	ENSMUST00000064831.5|Entpd4|ENSMUSG00000095463.2|ectonucleoside triphosphate diphosphohydrolase 4
mm10_v2_chr9_-_119341390_119341420	0.314986	Hoxd1	ENSMUST00000139870.1|Myd88|ENSMUSG00000032508.8|myeloid differentiation primary response gene 88
mm10_v2_chr12_-_87388317_87388355	0.313908	Hoxd1	ENSMUST00000021424.4|Sptlc2|ENSMUSG00000021036.4|serine palmitoyltransferase, long chain base subunit 2
mm10_v2_chr18_+_12741324_12741355	0.307741	Hoxd1	ENSMUST00000115857.2|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000121018.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2) 	ENSMUST00000119108.1|Cabyr|ENSMUSG00000024430.7|calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)
mm10_v2_chr14_+_26119811_26119811	0.293557	Hoxd1	ENSMUST00000173617.1|Duxbl2|ENSMUSG00000072675.6|doubl homeobox B-like 2
mm10_v2_chr2_+_119047129_119047159	0.274905	Hoxd1	ENSMUST00000153300.1|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5 	ENSMUST00000028799.5|Casc5|ENSMUSG00000027326.7|cancer susceptibility candidate 5
mm10_v2_chr2_-_160619971_160619971	0.267213	Hoxd1	ENSMUST00000109473.1|Gm14221|ENSMUSG00000078956.2|predicted gene 14221
mm10_v2_chr10_+_75037066_75037100	0.266275	Hoxd1	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr5_+_145204523_145204668	0.26197	Hoxd1	ENSMUST00000085671.3|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5 	ENSMUST00000031601.7|Zkscan5|ENSMUSG00000055991.9|zinc finger with KRAB and SCAN domains 5
mm10_v2_chr18_-_24603464_24603530	0.260923	Hoxd1	ENSMUST00000154205.1|Slc39a6|ENSMUSG00000024270.5|solute carrier family 39 (metal ion transporter), member 6
mm10_v2_chr3_-_41742471_41742548	0.252656	Hoxd1	ENSMUST00000026866.8|Sclt1|ENSMUSG00000059834.6|sodium channel and clathrin linker 1
mm10_v2_chr7_-_140154712_140154877	0.242082	Hoxd1	ENSMUST00000059241.7|Sprn|ENSMUSG00000045733.7|shadow of prion protein
mm10_v2_chr2_-_73580288_73580353	0.23571	Hoxd1	ENSMUST00000028515.3|Chrna1|ENSMUSG00000027107.3|cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
mm10_v2_chr2_-_84715160_84715218	0.232824	Hoxd1	ENSMUST00000035840.5|Zdhhc5|ENSMUSG00000034075.10|zinc finger, DHHC domain containing 5
mm10_v2_chr16_-_45724600_45724619	0.232191	Hoxd1	ENSMUST00000096057.4|Tagln3|ENSMUSG00000022658.10|transgelin 3
mm10_v2_chr10_+_103367748_103367836	0.231755	Hoxd1	ENSMUST00000074204.4|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15 	ENSMUST00000179636.1|Slc6a15|ENSMUSG00000019894.7|solute carrier family 6 (neurotransmitter transporter), member 15
mm10_v2_chr12_-_24493656_24493656	0.220692	Hoxd1	ENSMUST00000073088.2|Gm16372|ENSMUSG00000057160.2|predicted pseudogene 16372
mm10_v2_chr19_+_3323301_3323339	0.205952	Hoxd1	ENSMUST00000025835.4|Cpt1a|ENSMUSG00000024900.4|carnitine palmitoyltransferase 1a, liver
mm10_v2_chr18_+_59062282_59062376	0.202435	Hoxd1	ENSMUST00000165666.2|A730017C20Rik|ENSMUSG00000050875.5|RIKEN cDNA A730017C20 gene
mm10_v2_chr17_+_36837123_36837211	0.202043	Hoxd1	ENSMUST00000179968.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130367.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000130801.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000144182.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000123715.1|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26 	ENSMUST00000053434.8|Trim26|ENSMUSG00000024457.10|tripartite motif-containing 26
mm10_v2_chr19_-_37330613_37330613	0.182979	Hoxd1	ENSMUST00000131070.1|Ide|ENSMUSG00000056999.8|insulin degrading enzyme
mm10_v2_chr4_+_102570065_102570124	0.174075	Hoxd1	ENSMUST00000097950.2|Pde4b|ENSMUSG00000028525.10|phosphodiesterase 4B, cAMP specific
mm10_v2_chr2_-_69712461_69712606	0.172737	Hoxd1	ENSMUST00000102706.3|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1 	ENSMUST00000073152.6|Fastkd1|ENSMUSG00000027086.10|FAST kinase domains 1
mm10_v2_chr4_-_147809788_147809840	0.166204	Hoxd1	ENSMUST00000105734.3|Gm13157|ENSMUSG00000078495.4|predicted gene 13157 	ENSMUST00000176201.1|Gm20707|ENSMUSG00000093594.1|predicted gene 20707
mm10_v2_chr4_+_147492417_147492417	0.161116	Hoxd1	ENSMUST00000105721.2|Gm13152|ENSMUSG00000078496.3|predicted gene 13152
mm10_v2_chr13_-_56895737_56895793	0.144696	Hoxd1	ENSMUST00000022023.6|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7 	ENSMUST00000109871.1|Trpc7|ENSMUSG00000021541.7|transient receptor potential cation channel, subfamily C, member 7
mm10_v2_chr16_+_34690548_34690616	0.141431	Hoxd1	ENSMUST00000023532.6|Ccdc14|ENSMUSG00000022833.6|coiled-coil domain containing 14
mm10_v2_chr19_+_23723279_23723279	0.137998	Hoxd1	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr14_+_55559993_55560006	0.124585	Hoxd1	ENSMUST00000117236.1|Dcaf11|ENSMUSG00000022214.8|DDB1 and CUL4 associated factor 11
mm10_v2_chr3_+_103739366_103739366	0.118373	Hoxd1	ENSMUST00000106852.1|Gm10964|ENSMUSG00000078620.1|predicted gene 10964
mm10_v2_chr16_+_18836573_18836583	0.10089	Hoxd1	ENSMUST00000055413.6|2510002D24Rik|ENSMUSG00000071632.4|RIKEN cDNA 2510002D24 gene
mm10_v2_chr8_+_72219726_72219785	0.099518	Hoxd1	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr10_-_86011833_86011896	0.0972666	Hoxd1	ENSMUST00000105304.1|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C 	ENSMUST00000061699.5|Bpifc|ENSMUSG00000050108.6|BPI fold containing family C
mm10_v2_chr18_+_24603952_24603972	0.0936823	Hoxd1	ENSMUST00000025120.6|Elp2|ENSMUSG00000024271.7|elongator acetyltransferase complex subunit 2
mm10_v2_chr9_+_105395348_105395411	0.0932847	Hoxd1	ENSMUST00000035181.3|Aste1|ENSMUSG00000032567.8|asteroid homolog 1 (Drosophila)
mm10_v2_chr16_+_65520503_65520548	0.0917959	Hoxd1	ENSMUST00000176330.1|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1 	ENSMUST00000004964.8|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1 	ENSMUST00000176038.1|Pou1f1|ENSMUSG00000004842.12|POU domain, class 1, transcription factor 1
mm10_v2_chr1_-_33814591_33814600	0.0848327	Hoxd1	ENSMUST00000019861.6|Zfp451|ENSMUSG00000042197.7|zinc finger protein 451
mm10_v2_chr15_-_8710734_8710764	0.0651061	Hoxd1	ENSMUST00000005493.7|Slc1a3|ENSMUSG00000005360.8|solute carrier family 1 (glial high affinity glutamate transporter), member 3
mm10_v2_chr1_-_185329331_185329401	0.0541567	Hoxd1	ENSMUST00000027921.4|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110975.1|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial 	ENSMUST00000110974.3|Iars2|ENSMUSG00000026618.5|isoleucine-tRNA synthetase 2, mitochondrial
mm10_v2_chr4_+_145585166_145585211	0.0414561	Hoxd1	ENSMUST00000105739.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212 	ENSMUST00000119718.1|Gm13212|ENSMUSG00000078502.4|predicted gene 13212
mm10_v2_chr11_-_45955183_45955193	0.0397052	Hoxd1	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr10_-_76110956_76110962	0.0366475	Hoxd1	ENSMUST00000120757.1|Slc5a4b|ENSMUSG00000020226.9|solute carrier family 5 (neutral amino acid transporters, system A), member 4b
mm10_v2_chr7_+_128744870_128745020	0.0328816	Hoxd1	ENSMUST00000042942.8|Sec23ip|ENSMUSG00000055319.7|Sec23 interacting protein
mm10_v2_chr2_-_150255591_150255591	0.0112032	Hoxd1	ENSMUST00000063463.5|Gm21994|ENSMUSG00000074735.2|predicted gene 21994
