mm10_v2_chr3_-_116129615_116129688	5.36176	Hoxd9	ENSMUST00000029574.8|Vcam1|ENSMUSG00000027962.10|vascular cell adhesion molecule 1
mm10_v2_chr18_-_78206408_78206440	3.85682	Hoxd9	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr4_+_136143497_136143497	3.27865	Hoxd9	ENSMUST00000008016.2|Id3|ENSMUSG00000007872.3|inhibitor of DNA binding 3
mm10_v2_chr7_+_66365905_66365905	3.19722	Hoxd9	ENSMUST00000107486.1|Gm10974|ENSMUSG00000078677.1|predicted gene 10974
mm10_v2_chr15_-_65014904_65014904	2.80225	Hoxd9	ENSMUST00000110100.2|Gm21961|ENSMUSG00000079024.2|predicted gene, 21961
mm10_v2_chr16_-_45693658_45693743	2.59187	Hoxd9	ENSMUST00000114562.2|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7 	ENSMUST00000036617.7|Tmprss7|ENSMUSG00000033177.7|transmembrane serine protease 7
mm10_v2_chr6_-_36811361_36811361	2.58985	Hoxd9	ENSMUST00000101534.1|Ptn|ENSMUSG00000029838.8|pleiotrophin
mm10_v2_chrX_+_82948861_82948915	2.56332	Hoxd9	ENSMUST00000114000.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr17_-_32166879_32166898	2.37695	Hoxd9	ENSMUST00000087723.3|Notch3|ENSMUSG00000038146.7|notch 3
mm10_v2_chr7_+_67647405_67647456	2.19943	Hoxd9	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr3_-_66296807_66296837	2.12612	Hoxd9	ENSMUST00000029419.7|Veph1|ENSMUSG00000027831.9|ventricular zone expressed PH domain-containing 1
mm10_v2_chr9_-_64172879_64172918	1.93664	Hoxd9	ENSMUST00000176299.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000130127.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000176794.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein 	ENSMUST00000177045.1|Zwilch|ENSMUSG00000032400.11|zwilch kinetochore protein
mm10_v2_chrX_+_85048309_85048413	1.76466	Hoxd9	ENSMUST00000113991.1|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy 	ENSMUST00000113992.2|Dmd|ENSMUSG00000045103.11|dystrophin, muscular dystrophy
mm10_v2_chr13_-_105271039_105271039	1.62089	Hoxd9	ENSMUST00000069686.6|Rnf180|ENSMUSG00000021720.10|ring finger protein 180
mm10_v2_chr1_-_163289214_163289235	1.6094	Hoxd9	ENSMUST00000183691.1|Prrx1|ENSMUSG00000026586.10|paired related homeobox 1
mm10_v2_chr11_+_29373618_29373777	1.58396	Hoxd9	ENSMUST00000040182.6|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A 	ENSMUST00000109477.1|Ccdc88a|ENSMUSG00000032740.10|coiled coil domain containing 88A
mm10_v2_chr17_-_78684262_78684352	1.54293	Hoxd9	ENSMUST00000145480.1|Strn|ENSMUSG00000024077.9|striatin, calmodulin binding protein
mm10_v2_chr11_-_109472611_109472688	1.43262	Hoxd9	ENSMUST00000168740.1|Slc16a6|ENSMUSG00000041920.8|solute carrier family 16 (monocarboxylic acid transporters), member 6
mm10_v2_chr3_+_114030532_114030571	1.42443	Hoxd9	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr2_-_58052832_58052870	1.40344	Hoxd9	ENSMUST00000090940.5|Ermn|ENSMUSG00000026830.9|ermin, ERM-like protein
mm10_v2_chr2_-_63184253_63184292	1.31423	Hoxd9	ENSMUST00000075052.3|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7 	ENSMUST00000112454.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr8_+_84723003_84723022	1.30463	Hoxd9	ENSMUST00000098571.4|G430095P16Rik|ENSMUSG00000074203.4|RIKEN cDNA G430095P16 gene
mm10_v2_chr3_+_35754121_35754135	1.27887	Hoxd9	ENSMUST00000108186.1|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B 	ENSMUST00000029257.8|Atp11b|ENSMUSG00000037400.10|ATPase, class VI, type 11B
mm10_v2_chr1_-_128102412_128102485	1.25795	Hoxd9	ENSMUST00000112538.1|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3 	ENSMUST00000086614.5|Zranb3|ENSMUSG00000036086.10|zinc finger, RAN-binding domain containing 3
mm10_v2_chr7_+_127800604_127800696	1.14703	Hoxd9	ENSMUST00000046863.5|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000106272.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 	ENSMUST00000139068.1|Hsd3b7|ENSMUSG00000042289.5|hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7
mm10_v2_chr3_-_49757257_49757316	1.10609	Hoxd9	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr7_-_16286744_16286795	1.04162	Hoxd9	ENSMUST00000150528.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000118976.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9 	ENSMUST00000146609.2|Ccdc9|ENSMUSG00000041375.12|coiled-coil domain containing 9
mm10_v2_chr1_+_167598384_167598411	1.01037	Hoxd9	ENSMUST00000015987.3|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chr2_-_116064721_116064749	0.99021	Hoxd9	ENSMUST00000110906.2|Meis2|ENSMUSG00000027210.14|Meis homeobox 2
mm10_v2_chr3_+_53845086_53845086	0.973394	Hoxd9	ENSMUST00000108014.1|Gm10985|ENSMUSG00000078742.1|predicted gene 10985
mm10_v2_chr19_+_23723279_23723279	0.969734	Hoxd9	ENSMUST00000067077.1|Gm9938|ENSMUSG00000054178.1|predicted gene 9938
mm10_v2_chr13_-_41273977_41273977	0.922382	Hoxd9	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr1_+_167598450_167598480	0.919488	Hoxd9	ENSMUST00000111386.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma 	ENSMUST00000111384.1|Rxrg|ENSMUSG00000015843.4|retinoid X receptor gamma
mm10_v2_chrM_+_11734_11757	0.910833	Hoxd9	ENSMUST00000082418.1|mt-Nd5|ENSMUSG00000064367.1|mitochondrially encoded NADH dehydrogenase 5
mm10_v2_chr5_-_62766153_62766246	0.902543	Hoxd9	ENSMUST00000076623.4|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr2_-_84425258_84425411	0.872388	Hoxd9	ENSMUST00000074262.2|Calcrl|ENSMUSG00000059588.7|calcitonin receptor-like
mm10_v2_chr14_-_100149764_100149764	0.813497	Hoxd9	ENSMUST00000097079.4|Klf12|ENSMUSG00000072294.4|Kruppel-like factor 12
mm10_v2_chr2_-_175131864_175131864	0.774353	Hoxd9	ENSMUST00000108929.2|Gm14399|ENSMUSG00000090093.2|predicted gene 14399
mm10_v2_chr15_+_39006272_39006365	0.768241	Hoxd9	ENSMUST00000179165.1|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila) 	ENSMUST00000022906.7|Fzd6|ENSMUSG00000022297.8|frizzled homolog 6 (Drosophila)
mm10_v2_chr5_-_77408034_77408051	0.752021	Hoxd9	ENSMUST00000163898.1|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7 	ENSMUST00000046746.6|Igfbp7|ENSMUSG00000036256.7|insulin-like growth factor binding protein 7
mm10_v2_chr16_+_10835046_10835084	0.713471	Hoxd9	ENSMUST00000037913.8|Rmi2|ENSMUSG00000037991.9|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
mm10_v2_chr17_-_45474839_45474938	0.698274	Hoxd9	ENSMUST00000024731.8|Spats1|ENSMUSG00000023935.9|spermatogenesis associated, serine-rich 1
mm10_v2_chr19_-_56548122_56548222	0.695943	Hoxd9	ENSMUST00000026063.5|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae) 	ENSMUST00000182276.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr7_-_14562171_14562171	0.672699	Hoxd9	ENSMUST00000181796.1|Vmn1r90|ENSMUSG00000097425.1|vomeronasal 1 receptor 90
mm10_v2_chr17_+_78491549_78491565	0.671012	Hoxd9	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr13_-_74376566_74376566	0.650823	Hoxd9	ENSMUST00000091481.2|Zfp72|ENSMUSG00000069184.2|zinc finger protein 72
mm10_v2_chr9_-_96437434_96437434	0.636951	Hoxd9	ENSMUST00000070500.2|BC043934|ENSMUSG00000056418.2|cDNA sequence BC043934
mm10_v2_chr5_+_63812447_63812538	0.599617	Hoxd9	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr2_-_63184170_63184195	0.575305	Hoxd9	ENSMUST00000112452.1|Kcnh7|ENSMUSG00000059742.4|potassium voltage-gated channel, subfamily H (eag-related), member 7
mm10_v2_chr19_-_29753600_29753600	0.560823	Hoxd9	ENSMUST00000175764.1|9930021J03Rik|ENSMUSG00000046138.8|RIKEN cDNA 9930021J03 gene
mm10_v2_chr7_+_30565410_30565432	0.525191	Hoxd9	ENSMUST00000043850.7|Igflr1|ENSMUSG00000036826.8|IGF-like family receptor 1
mm10_v2_chr16_-_65562686_65562769	0.516411	Hoxd9	ENSMUST00000004965.6|Chmp2b|ENSMUSG00000004843.6|charged multivesicular body protein 2B
mm10_v2_chr9_-_39604124_39604403	0.505451	Hoxd9	ENSMUST00000042485.4|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984 	ENSMUST00000141370.1|AW551984|ENSMUSG00000038112.9|expressed sequence AW551984
mm10_v2_chr16_+_44943737_44943752	0.50531	Hoxd9	ENSMUST00000114622.3|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3 	ENSMUST00000166731.1|Cd200r3|ENSMUSG00000036172.11|CD200 receptor 3
mm10_v2_chr1_+_183388981_183388981	0.504329	Hoxd9	ENSMUST00000097043.5|Taf1a|ENSMUSG00000072258.5|TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
mm10_v2_chr16_-_50330987_50331017	0.496471	Hoxd9	ENSMUST00000114488.1|Bbx|ENSMUSG00000022641.9|bobby sox homolog (Drosophila)
mm10_v2_chr7_+_120851183_120851201	0.464071	Hoxd9	ENSMUST00000106487.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000143322.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase 	ENSMUST00000106488.1|Eef2k|ENSMUSG00000035064.10|eukaryotic elongation factor-2 kinase
mm10_v2_chr19_+_56548254_56548283	0.456369	Hoxd9	ENSMUST00000071423.5|Nhlrc2|ENSMUSG00000025078.8|NHL repeat containing 2
mm10_v2_chr15_-_37459327_37459380	0.446046	Hoxd9	ENSMUST00000119730.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta 	ENSMUST00000120746.1|Ncald|ENSMUSG00000051359.8|neurocalcin delta
mm10_v2_chr5_-_69590783_69590803	0.43471	Hoxd9	ENSMUST00000173927.1|Gnpda2|ENSMUSG00000029209.9|glucosamine-6-phosphate deaminase 2
mm10_v2_chr11_+_110968016_110968042	0.433096	Hoxd9	ENSMUST00000106636.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENSMUST00000180023.1|Kcnj16|ENSMUSG00000051497.9|potassium inwardly-rectifying channel, subfamily J, member 16
mm10_v2_chr19_-_56548013_56548046	0.399063	Hoxd9	ENSMUST00000182059.1|Dclre1a|ENSMUSG00000025077.7|DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
mm10_v2_chr12_+_102128718_102128739	0.39399	Hoxd9	ENSMUST00000159329.1|Slc24a4|ENSMUSG00000041771.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
mm10_v2_chr1_+_180330470_180330493	0.36368	Hoxd9	ENSMUST00000070181.6|Itpkb|ENSMUSG00000038855.9|inositol 1,4,5-trisphosphate 3-kinase B
mm10_v2_chr10_+_75037066_75037100	0.339911	Hoxd9	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr2_+_30952955_30953016	0.271582	Hoxd9	ENSMUST00000028199.5|Tor1b|ENSMUSG00000026848.8|torsin family 1, member B
mm10_v2_chr14_-_118923070_118923167	0.270954	Hoxd9	ENSMUST00000047208.5|Dzip1|ENSMUSG00000042156.9|DAZ interacting protein 1
mm10_v2_chr1_+_180111339_180111339	0.261473	Hoxd9	ENSMUST00000145181.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr14_-_75754475_75754563	0.255921	Hoxd9	ENSMUST00000049168.7|Cog3|ENSMUSG00000034893.7|component of oligomeric golgi complex 3
mm10_v2_chrX_-_111697069_111697127	0.251945	Hoxd9	ENSMUST00000113422.2|Hdx|ENSMUSG00000034551.6|highly divergent homeobox 	ENSMUST00000038472.5|Hdx|ENSMUSG00000034551.6|highly divergent homeobox
mm10_v2_chr12_+_36314160_36314171	0.243347	Hoxd9	ENSMUST00000041407.5|Sostdc1|ENSMUSG00000036169.5|sclerostin domain containing 1
mm10_v2_chr3_-_65958236_65958252	0.234575	Hoxd9	ENSMUST00000029416.7|Ccnl1|ENSMUSG00000027829.9|cyclin L1
mm10_v2_chr11_-_89538556_89538556	0.211456	Hoxd9	ENSMUST00000169201.1|Ankfn1|ENSMUSG00000047773.6|ankyrin-repeat and fibronectin type III domain containing 1
mm10_v2_chr9_-_21989427_21989456	0.20016	Hoxd9	ENSMUST00000045726.6|Rgl3|ENSMUSG00000040146.8|ral guanine nucleotide dissociation stimulator-like 3
mm10_v2_chr2_+_91526756_91526763	0.166377	Hoxd9	ENSMUST00000111338.3|Ckap5|ENSMUSG00000040549.10|cytoskeleton associated protein 5
mm10_v2_chr10_-_127030789_127030812	0.139654	Hoxd9	ENSMUST00000120547.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial 	ENSMUST00000152054.1|Tsfm|ENSMUSG00000040521.5|Ts translation elongation factor, mitochondrial
mm10_v2_chr12_+_59129720_59129755	0.129365	Hoxd9	ENSMUST00000175912.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000176892.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr1_+_49244616_49244616	0.116657	Hoxd9	ENSMUST00000056879.8|C230029F24Rik|ENSMUSG00000051616.8|RIKEN cDNA C230029F24 gene
mm10_v2_chr12_+_59129757_59129818	0.107288	Hoxd9	ENSMUST00000069430.8|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5 	ENSMUST00000177370.1|Ctage5|ENSMUSG00000021000.9|CTAGE family, member 5
mm10_v2_chr2_+_11172080_11172140	0.107228	Hoxd9	ENSMUST00000114853.1|Prkcq|ENSMUSG00000026778.7|protein kinase C, theta
mm10_v2_chr1_-_139377041_139377078	0.0982471	Hoxd9	ENSMUST00000059825.5|Crb1|ENSMUSG00000063681.8|crumbs homolog 1 (Drosophila)
mm10_v2_chr13_+_49544443_49544533	0.0862412	Hoxd9	ENSMUST00000177948.1|Aspn|ENSMUSG00000021388.7|asporin 	ENSMUST00000021820.6|Aspn|ENSMUSG00000021388.7|asporin
mm10_v2_chr8_+_84856982_84857036	0.0788762	Hoxd9	ENSMUST00000003906.6|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit 	ENSMUST00000109754.1|Farsa|ENSMUSG00000003808.12|phenylalanyl-tRNA synthetase, alpha subunit
mm10_v2_chr5_-_62765618_62765656	0.0646322	Hoxd9	ENSMUST00000159470.1|Arap2|ENSMUSG00000037999.9|ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
mm10_v2_chr10_+_115569986_115570035	0.049164	Hoxd9	ENSMUST00000173620.1|A930009A15Rik|ENSMUSG00000092210.1|RIKEN cDNA A930009A15 gene
mm10_v2_chr10_-_63421739_63421739	0.0485705	Hoxd9	ENSMUST00000054760.4|Gm7075|ENSMUSG00000048185.4|predicted gene 7075
mm10_v2_chr2_-_45117349_45117395	0.0429734	Hoxd9	ENSMUST00000176438.2|Zeb2|ENSMUSG00000026872.10|zinc finger E-box binding homeobox 2
mm10_v2_chr7_-_34313531_34313568	0.0422814	Hoxd9	ENSMUST00000108074.1|4931406P16Rik|ENSMUSG00000066571.7|RIKEN cDNA 4931406P16 gene
mm10_v2_chr19_+_46689902_46689943	0.0383466	Hoxd9	ENSMUST00000074912.7|2010012O05Rik|ENSMUSG00000062376.7|RIKEN cDNA 2010012O05 gene
mm10_v2_chr8_-_41016295_41016321	0.0253191	Hoxd9	ENSMUST00000131965.1|Mtus1|ENSMUSG00000045636.10|mitochondrial tumor suppressor 1
mm10_v2_chr17_+_47649621_47649621	0.0251707	Hoxd9	ENSMUST00000145314.1|Usp49|ENSMUSG00000090115.1|ubiquitin specific peptidase 49
mm10_v2_chr12_-_34291092_34291092	0.0197272	Hoxd9	ENSMUST00000166546.2|Gm18025|ENSMUSG00000095406.1|predicted gene, 18025
mm10_v2_chr6_+_11925869_11925941	0.0163612	Hoxd9	ENSMUST00000115510.1|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000115511.2|Phf14|ENSMUSG00000029629.10|PHD finger protein 14 	ENSMUST00000090632.4|Phf14|ENSMUSG00000029629.10|PHD finger protein 14
