mm10_v2_chr4_+_154960915_154960930	7.50138	Nanog	ENSMUST00000049621.6|Hes5|ENSMUSG00000048001.7|hairy and enhancer of split 5 (Drosophila)
mm10_v2_chr9_+_65890237_65890343	7.16096	Nanog	ENSMUST00000045802.6|2810417H13Rik|ENSMUSG00000040204.6|RIKEN cDNA 2810417H13 gene
mm10_v2_chr7_-_115846080_115846112	5.44952	Nanog	ENSMUST00000166207.1|Sox6|ENSMUSG00000051910.7|SRY-box containing gene 6
mm10_v2_chr7_+_67647405_67647456	5.28189	Nanog	ENSMUST00000032774.8|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23 	ENSMUST00000107471.1|Ttc23|ENSMUSG00000030555.9|tetratricopeptide repeat domain 23
mm10_v2_chr3_+_88081997_88082051	4.97751	Nanog	ENSMUST00000071812.5|Iqgap3|ENSMUSG00000028068.9|IQ motif containing GTPase activating protein 3
mm10_v2_chr4_-_109665249_109665372	4.45893	Nanog	ENSMUST00000063531.4|Cdkn2c|ENSMUSG00000028551.8|cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)
mm10_v2_chr8_-_89044162_89044195	4.25077	Nanog	ENSMUST00000034090.6|Sall1|ENSMUSG00000031665.6|sal-like 1 (Drosophila)
mm10_v2_chr8_-_61902669_61902713	4.08366	Nanog	ENSMUST00000121785.1|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein 	ENSMUST00000034057.7|Palld|ENSMUSG00000058056.9|palladin, cytoskeletal associated protein
mm10_v2_chr10_-_42583628_42583639	3.98842	Nanog	ENSMUST00000019938.4|Nr2e1|ENSMUSG00000019803.5|nuclear receptor subfamily 2, group E, member 1
mm10_v2_chr15_-_71954395_71954424	3.88733	Nanog	ENSMUST00000159410.1|Col22a1|ENSMUSG00000079022.3|collagen, type XXII, alpha 1
mm10_v2_chr2_+_20737306_20737321	3.86165	Nanog	ENSMUST00000114606.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4 	ENSMUST00000114608.1|Etl4|ENSMUSG00000036617.10|enhancer trap locus 4
mm10_v2_chr15_+_25773985_25774042	3.75438	Nanog	ENSMUST00000125667.1|Myo10|ENSMUSG00000022272.11|myosin X
mm10_v2_chr5_+_33658123_33658160	3.72473	Nanog	ENSMUST00000074849.6|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3 	ENSMUST00000079534.4|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr5_+_33658567_33658616	3.55144	Nanog	ENSMUST00000114426.3|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chrX_-_60893430_60893440	3.49076	Nanog	ENSMUST00000135107.2|Sox3|ENSMUSG00000045179.8|SRY-box containing gene 3
mm10_v2_chrX_+_134308084_134308209	3.33097	Nanog	ENSMUST00000081064.5|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000101251.1|Cenpi|ENSMUSG00000031262.6|centromere protein I 	ENSMUST00000129782.1|Cenpi|ENSMUSG00000031262.6|centromere protein I
mm10_v2_chr14_+_73237891_73238007	3.30224	Nanog	ENSMUST00000044405.6|Lpar6|ENSMUSG00000033446.6|lysophosphatidic acid receptor 6
mm10_v2_chr10_+_58394381_58394395	3.26464	Nanog	ENSMUST00000105468.1|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr2_+_134786154_134786170	3.17656	Nanog	ENSMUST00000110116.1|Plcb1|ENSMUSG00000051177.10|phospholipase C, beta 1
mm10_v2_chr1_-_52490736_52490736	3.05289	Nanog	ENSMUST00000170269.1|Nab1|ENSMUSG00000002881.8|Ngfi-A binding protein 1
mm10_v2_chrY_-_1245685_1245752	3.02813	Nanog	ENSMUST00000143286.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000137048.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000069309.7|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome 	ENSMUST00000139365.1|Uty|ENSMUSG00000068457.8|ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
mm10_v2_chr6_+_124829582_124829688	2.87929	Nanog	ENSMUST00000024270.7|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr6_-_67037399_67037417	2.86289	Nanog	ENSMUST00000043098.6|Gadd45a|ENSMUSG00000036390.6|growth arrest and DNA-damage-inducible 45 alpha
mm10_v2_chr5_+_33658550_33658563	2.77588	Nanog	ENSMUST00000152847.1|Tacc3|ENSMUSG00000037313.10|transforming, acidic coiled-coil containing protein 3
mm10_v2_chr10_+_58394361_58394380	2.75504	Nanog	ENSMUST00000020077.4|Lims1|ENSMUSG00000019920.11|LIM and senescent cell antigen-like domains 1
mm10_v2_chr6_+_124829540_124829577	2.73015	Nanog	ENSMUST00000150120.1|Cdca3|ENSMUSG00000023505.7|cell division cycle associated 3
mm10_v2_chr18_-_78206408_78206440	2.68807	Nanog	ENSMUST00000163367.1|Slc14a2|ENSMUSG00000024552.9|solute carrier family 14 (urea transporter), member 2
mm10_v2_chr10_-_7212222_7212247	2.65347	Nanog	ENSMUST00000015346.5|Cnksr3|ENSMUSG00000015202.7|Cnksr family member 3
mm10_v2_chr4_-_58553553_58553898	2.63643	Nanog	ENSMUST00000107575.2|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000107574.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1 	ENSMUST00000147354.1|Lpar1|ENSMUSG00000038668.8|lysophosphatidic acid receptor 1
mm10_v2_chr7_+_79660196_79660261	2.60759	Nanog	ENSMUST00000035977.7|Ticrr|ENSMUSG00000046591.9|TOPBP1-interacting checkpoint and replication regulator
mm10_v2_chr7_+_112742025_112742060	2.52181	Nanog	ENSMUST00000164363.1|Tead1|ENSMUSG00000055320.10|TEA domain family member 1
mm10_v2_chr17_+_78491549_78491565	2.4517	Nanog	ENSMUST00000079363.4|Gm10093|ENSMUSG00000061062.4|predicted pseudogene 10093
mm10_v2_chr19_-_9899450_9899533	2.44058	Nanog	ENSMUST00000025562.7|Incenp|ENSMUSG00000024660.8|inner centromere protein
mm10_v2_chr18_+_57142782_57142796	2.38587	Nanog	ENSMUST00000139892.1|Megf10|ENSMUSG00000024593.9|multiple EGF-like-domains 10
mm10_v2_chr13_+_23752267_23752351	2.35875	Nanog	ENSMUST00000091703.2|Hist1h3b|ENSMUSG00000069267.2|histone cluster 1, H3b
mm10_v2_chr13_-_89742244_89742334	2.15658	Nanog	ENSMUST00000109543.2|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159337.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000159910.1|Vcan|ENSMUSG00000021614.10|versican 	ENSMUST00000109544.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr17_-_25727364_25727426	2.08826	Nanog	ENSMUST00000170070.1|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18 	ENSMUST00000048054.7|Chtf18|ENSMUSG00000019214.7|CTF18, chromosome transmission fidelity factor 18
mm10_v2_chr6_+_71282280_71282280	2.05306	Nanog	ENSMUST00000080949.7|Krcc1|ENSMUSG00000053012.11|lysine-rich coiled-coil 1
mm10_v2_chr14_-_12345847_12345872	2.04917	Nanog	ENSMUST00000022262.4|Fezf2|ENSMUSG00000021743.5|Fez family zinc finger 2
mm10_v2_chr9_-_52168111_52168111	2.01324	Nanog	ENSMUST00000165519.1|Zc3h12c|ENSMUSG00000035164.7|zinc finger CCCH type containing 12C
mm10_v2_chr4_+_116708467_116708509	1.98213	Nanog	ENSMUST00000030452.6|Ccdc163|ENSMUSG00000028689.8|coiled-coil domain containing 163
mm10_v2_chr2_+_62664279_62664300	1.96836	Nanog	ENSMUST00000028257.2|Gca|ENSMUSG00000026893.4|grancalcin
mm10_v2_chr2_+_38511643_38511814	1.95111	Nanog	ENSMUST00000054234.3|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112902.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6 	ENSMUST00000112895.1|Nek6|ENSMUSG00000026749.5|NIMA (never in mitosis gene a)-related expressed kinase 6
mm10_v2_chr6_+_34746368_34746393	1.92767	Nanog	ENSMUST00000142716.1|Cald1|ENSMUSG00000029761.10|caldesmon 1
mm10_v2_chr2_+_116067213_116067250	1.91146	Nanog	ENSMUST00000152412.1|G630016G05Rik|ENSMUSG00000086308.1|RIKEN cDNA G630016G05 gene
mm10_v2_chrX_-_53269786_53269858	1.90354	Nanog	ENSMUST00000114841.1|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B 	ENSMUST00000071023.5|Fam122b|ENSMUSG00000036022.9|family with sequence similarity 122, member B
mm10_v2_chr10_+_26772477_26772515	1.87866	Nanog	ENSMUST00000039557.7|Arhgap18|ENSMUSG00000039031.9|Rho GTPase activating protein 18
mm10_v2_chr13_-_89742490_89742515	1.85893	Nanog	ENSMUST00000109546.2|Vcan|ENSMUSG00000021614.10|versican
mm10_v2_chr9_-_66514567_66514597	1.82553	Nanog	ENSMUST00000056890.8|Fbxl22|ENSMUSG00000050503.8|F-box and leucine-rich repeat protein 22
mm10_v2_chr3_-_63851251_63851359	1.77767	Nanog	ENSMUST00000162269.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000159676.2|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1 	ENSMUST00000175947.1|Plch1|ENSMUSG00000036834.10|phospholipase C, eta 1
mm10_v2_chr4_-_42661893_42661893	1.77455	Nanog	ENSMUST00000108006.3|Il11ra2|ENSMUSG00000078735.3|interleukin 11 receptor, alpha chain 2
mm10_v2_chr7_-_144939823_144939869	1.71584	Nanog	ENSMUST00000093962.4|Ccnd1|ENSMUSG00000070348.4|cyclin D1
mm10_v2_chr17_-_51826562_51826601	1.69077	Nanog	ENSMUST00000024720.4|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000129667.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000156051.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000169480.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1 	ENSMUST00000148559.1|Satb1|ENSMUSG00000023927.9|special AT-rich sequence binding protein 1
mm10_v2_chr2_+_18064564_18064644	1.67347	Nanog	ENSMUST00000114671.1|Mllt10|ENSMUSG00000026743.10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
mm10_v2_chr8_-_25201349_25201459	1.66216	Nanog	ENSMUST00000084512.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1 	ENSMUST00000084030.4|Tacc1|ENSMUSG00000065954.4|transforming, acidic coiled-coil containing protein 1
mm10_v2_chr11_-_40733373_40733442	1.66003	Nanog	ENSMUST00000020579.8|Hmmr|ENSMUSG00000020330.10|hyaluronan mediated motility receptor (RHAMM)
mm10_v2_chr9_+_109096659_109096710	1.58237	Nanog	ENSMUST00000130366.1|Plxnb1|ENSMUSG00000053646.7|plexin B1
mm10_v2_chr11_+_44617310_44617336	1.53896	Nanog	ENSMUST00000081265.5|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000101326.3|Ebf1|ENSMUSG00000057098.8|early B cell factor 1 	ENSMUST00000109268.1|Ebf1|ENSMUSG00000057098.8|early B cell factor 1
mm10_v2_chr13_-_47106176_47106206	1.51595	Nanog	ENSMUST00000021807.6|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding) 	ENSMUST00000135278.1|Dek|ENSMUSG00000021377.8|DEK oncogene (DNA binding)
mm10_v2_chr15_-_50889043_50889054	1.49348	Nanog	ENSMUST00000183997.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human) 	ENSMUST00000183757.1|Trps1|ENSMUSG00000038679.10|trichorhinophalangeal syndrome I (human)
mm10_v2_chrX_-_20962005_20962025	1.4556	Nanog	ENSMUST00000123836.1|Uxt|ENSMUSG00000001134.3|ubiquitously expressed transcript
mm10_v2_chr12_-_34528844_34528904	1.43445	Nanog	ENSMUST00000110819.2|Hdac9|ENSMUSG00000004698.9|histone deacetylase 9
mm10_v2_chr18_+_77185815_77185879	1.41696	Nanog	ENSMUST00000079618.4|St8sia5|ENSMUSG00000025425.11|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
mm10_v2_chr6_-_108185552_108185587	1.40345	Nanog	ENSMUST00000167338.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000172188.1|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1 	ENSMUST00000032191.9|Sumf1|ENSMUSG00000030101.9|sulfatase modifying factor 1
mm10_v2_chr17_-_59013264_59013372	1.37475	Nanog	ENSMUST00000174122.1|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12 	ENSMUST00000025065.5|Nudt12|ENSMUSG00000024228.6|nudix (nucleoside diphosphate linked moiety X)-type motif 12
mm10_v2_chr7_+_82337218_82337218	1.36018	Nanog	ENSMUST00000173828.1|Adamtsl3|ENSMUSG00000070469.5|ADAMTS-like 3
mm10_v2_chr11_-_101171302_101171353	1.31299	Nanog	ENSMUST00000164474.1|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 	ENSMUST00000043397.7|Plekhh3|ENSMUSG00000035172.9|pleckstrin homology domain containing, family H (with MyTH4 domain) member 3
mm10_v2_chr9_-_44342332_44342381	1.30389	Nanog	ENSMUST00000097558.3|Hmbs|ENSMUSG00000032126.9|hydroxymethylbilane synthase
mm10_v2_chr5_-_16731074_16731074	1.26207	Nanog	ENSMUST00000073014.5|Gm8991|ENSMUSG00000059179.5|predicted pseudogene 8991
mm10_v2_chrX_+_36795642_36795653	1.25243	Nanog	ENSMUST00000016463.3|Slc25a5|ENSMUSG00000016319.3|solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5
mm10_v2_chr2_-_116067391_116067444	1.2455	Nanog	ENSMUST00000140185.1|2700033N17Rik|ENSMUSG00000086328.1|RIKEN cDNA 2700033N17 gene
mm10_v2_chr1_-_186117251_186117310	1.23158	Nanog	ENSMUST00000045388.7|Lyplal1|ENSMUSG00000039246.7|lysophospholipase-like 1
mm10_v2_chr19_-_36736653_36736670	1.19501	Nanog	ENSMUST00000087321.2|Ppp1r3c|ENSMUSG00000067279.2|protein phosphatase 1, regulatory (inhibitor) subunit 3C
mm10_v2_chr12_-_91384403_91384430	1.18364	Nanog	ENSMUST00000141429.1|Cep128|ENSMUSG00000061533.9|centrosomal protein 128
mm10_v2_chr1_-_158814469_158814469	1.15268	Nanog	ENSMUST00000161589.2|Pappa2|ENSMUSG00000073530.5|pappalysin 2
mm10_v2_chr4_+_43058939_43058969	1.14414	Nanog	ENSMUST00000079978.6|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr7_+_64287665_64287676	1.14047	Nanog	ENSMUST00000032736.4|Mtmr10|ENSMUSG00000030522.8|myotubularin related protein 10
mm10_v2_chr3_-_39359128_39359160	1.11129	Nanog	ENSMUST00000056409.2|Gm9845|ENSMUSG00000050533.2|predicted pseudogene 9845
mm10_v2_chr9_+_44379490_44379513	1.0662	Nanog	ENSMUST00000066601.6|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr4_+_43059028_43059080	1.06042	Nanog	ENSMUST00000163653.1|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107952.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans) 	ENSMUST00000107953.2|Unc13b|ENSMUSG00000028456.11|unc-13 homolog B (C. elegans)
mm10_v2_chr13_-_19619820_19619830	1.05879	Nanog	ENSMUST00000002885.6|Epdr1|ENSMUSG00000002808.6|ependymin related protein 1 (zebrafish)
mm10_v2_chr9_+_44379536_44379624	1.04929	Nanog	ENSMUST00000161318.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1 	ENSMUST00000160902.1|Hyou1|ENSMUSG00000032115.7|hypoxia up-regulated 1
mm10_v2_chr12_+_3891728_3891801	1.04399	Nanog	ENSMUST00000172689.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A 	ENSMUST00000111186.1|Dnmt3a|ENSMUSG00000020661.9|DNA methyltransferase 3A
mm10_v2_chr13_+_96082158_96082158	1.00666	Nanog	ENSMUST00000185178.1|Gm17190|ENSMUSG00000099115.1|predicted gene 17190
mm10_v2_chr13_-_3893556_3893589	0.997977	Nanog	ENSMUST00000099946.4|Net1|ENSMUSG00000021215.8|neuroepithelial cell transforming gene 1
mm10_v2_chr9_+_104063678_104063710	0.993251	Nanog	ENSMUST00000047799.5|Acad11|ENSMUSG00000090150.2|acyl-Coenzyme A dehydrogenase family, member 11
mm10_v2_chr12_-_83921809_83921898	0.992616	Nanog	ENSMUST00000135962.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000155112.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000136848.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila) 	ENSMUST00000126943.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr8_+_61487715_61487751	0.9866	Nanog	ENSMUST00000034058.6|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4 	ENSMUST00000126575.1|Cbr4|ENSMUSG00000031641.7|carbonyl reductase 4
mm10_v2_chr7_+_59228743_59228769	0.984945	Nanog	ENSMUST00000107537.1|Ube3a|ENSMUSG00000025326.8|ubiquitin protein ligase E3A
mm10_v2_chr9_-_15357692_15357788	0.966592	Nanog	ENSMUST00000098979.3|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene 	ENSMUST00000161132.1|5830418K08Rik|ENSMUSG00000046111.10|RIKEN cDNA 5830418K08 gene
mm10_v2_chr13_-_21716143_21716189	0.956615	Nanog	ENSMUST00000091756.1|Hist1h2bl|ENSMUSG00000094338.1|histone cluster 1, H2bl
mm10_v2_chrX_-_135009185_135009225	0.951413	Nanog	ENSMUST00000113185.2|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1 	ENSMUST00000064659.5|Zmat1|ENSMUSG00000052676.10|zinc finger, matrin type 1
mm10_v2_chr6_+_38551334_38551493	0.950753	Nanog	ENSMUST00000163047.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000161538.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae) 	ENSMUST00000057692.4|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr12_+_72441933_72441970	0.948912	Nanog	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr13_+_24943144_24943164	0.945044	Nanog	ENSMUST00000021773.5|Gpld1|ENSMUSG00000021340.6|glycosylphosphatidylinositol specific phospholipase D1
mm10_v2_chr15_+_34453285_34453312	0.933276	Nanog	ENSMUST00000060894.7|BC030476|ENSMUSG00000044726.7|cDNA sequence BC030476
mm10_v2_chr6_+_80018877_80018945	0.915836	Nanog	ENSMUST00000147663.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000128718.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000126005.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000133918.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr12_-_111813834_111813858	0.907749	Nanog	ENSMUST00000021715.5|Xrcc3|ENSMUSG00000021287.6|X-ray repair complementing defective repair in Chinese hamster cells 3
mm10_v2_chr3_+_54481429_54481429	0.902005	Nanog	ENSMUST00000091130.3|Gm5641|ENSMUSG00000069014.3|predicted gene 5641
mm10_v2_chr15_-_51991679_51991760	0.901638	Nanog	ENSMUST00000022927.9|Rad21|ENSMUSG00000022314.9|RAD21 homolog (S. pombe)
mm10_v2_chr6_+_80019008_80019048	0.896813	Nanog	ENSMUST00000126399.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4 	ENSMUST00000136421.1|Lrrtm4|ENSMUSG00000052581.7|leucine rich repeat transmembrane neuronal 4
mm10_v2_chr6_-_23132981_23132992	0.895429	Nanog	ENSMUST00000031707.7|Aass|ENSMUSG00000029695.7|aminoadipate-semialdehyde synthase
mm10_v2_chr3_+_103968110_103968446	0.891645	Nanog	ENSMUST00000117150.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000063717.7|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000055425.8|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000123611.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1 	ENSMUST00000090685.4|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr15_-_103251465_103251705	0.882246	Nanog	ENSMUST00000133600.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000134554.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000156927.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000149111.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2 	ENSMUST00000132836.1|Nfe2|ENSMUSG00000058794.6|nuclear factor, erythroid derived 2
mm10_v2_chr13_-_41273977_41273977	0.874303	Nanog	ENSMUST00000163881.1|Gm17364|ENSMUSG00000090853.1|predicted gene, 17364
mm10_v2_chr7_+_25681158_25681158	0.867735	Nanog	ENSMUST00000108403.3|B9d2|ENSMUSG00000063439.6|B9 protein domain 2
mm10_v2_chr12_-_83921899_83921934	0.848777	Nanog	ENSMUST00000117217.1|Numb|ENSMUSG00000021224.8|numb gene homolog (Drosophila)
mm10_v2_chr4_+_128688726_128688795	0.847924	Nanog	ENSMUST00000106080.1|Phc2|ENSMUSG00000028796.11|polyhomeotic-like 2 (Drosophila)
mm10_v2_chr17_-_32800938_32800938	0.846312	Nanog	ENSMUST00000080905.6|Zfp811|ENSMUSG00000055202.7|zinc finger protein 811
mm10_v2_chr19_+_7557473_7557497	0.838554	Nanog	ENSMUST00000141887.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136756.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr1_-_172027251_172027268	0.837491	Nanog	ENSMUST00000138714.1|Vangl2|ENSMUSG00000026556.9|vang-like 2 (van gogh, Drosophila)
mm10_v2_chr4_-_126968124_126968154	0.827811	Nanog	ENSMUST00000106108.2|Zmym4|ENSMUSG00000042446.10|zinc finger, MYM-type 4
mm10_v2_chr13_-_85127514_85127514	0.813053	Nanog	ENSMUST00000179230.1|Gm4076|ENSMUSG00000096449.1|predicted gene 4076
mm10_v2_chr2_+_29060239_29060287	0.784335	Nanog	ENSMUST00000100237.3|Ttf1|ENSMUSG00000026803.11|transcription termination factor, RNA polymerase I
mm10_v2_chr10_-_99126321_99126321	0.783972	Nanog	ENSMUST00000060761.5|Phxr2|ENSMUSG00000055108.5|per-hexamer repeat gene 2
mm10_v2_chr13_-_12258093_12258134	0.764057	Nanog	ENSMUST00000099856.4|Mtr|ENSMUSG00000021311.8|5-methyltetrahydrofolate-homocysteine methyltransferase
mm10_v2_chr9_-_7184440_7184518	0.755318	Nanog	ENSMUST00000140466.1|Dync2h1|ENSMUSG00000047193.9|dynein cytoplasmic 2 heavy chain 1
mm10_v2_chr15_-_13173607_13173644	0.746334	Nanog	ENSMUST00000036439.4|Cdh6|ENSMUSG00000039385.4|cadherin 6
mm10_v2_chr17_+_35379608_35379637	0.730596	Nanog	ENSMUST00000081435.4|H2-Q4|ENSMUSG00000035929.11|histocompatibility 2, Q region locus 4
mm10_v2_chr3_+_89421619_89421642	0.723443	Nanog	ENSMUST00000094378.3|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1 	ENSMUST00000137793.1|Shc1|ENSMUSG00000042626.7|src homology 2 domain-containing transforming protein C1
mm10_v2_chr19_+_60889749_60889749	0.713597	Nanog	ENSMUST00000003313.8|Grk5|ENSMUSG00000003228.8|G protein-coupled receptor kinase 5
mm10_v2_chr2_+_144527718_144527773	0.712913	Nanog	ENSMUST00000028914.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F 	ENSMUST00000110017.2|Polr3f|ENSMUSG00000027427.7|polymerase (RNA) III (DNA directed) polypeptide F
mm10_v2_chr16_+_13671922_13671937	0.704197	Nanog	ENSMUST00000035426.5|3110001I22Rik|ENSMUSG00000079737.3|RIKEN cDNA 3110001I22 gene
mm10_v2_chr13_+_44729794_44729807	0.695776	Nanog	ENSMUST00000172830.1|Jarid2|ENSMUSG00000038518.9|jumonji, AT rich interactive domain 2
mm10_v2_chr14_+_79515618_79515694	0.695774	Nanog	ENSMUST00000110835.1|Elf1|ENSMUSG00000036461.9|E74-like factor 1
mm10_v2_chr16_+_87454976_87454987	0.685697	Nanog	ENSMUST00000119504.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16 	ENSMUST00000131356.1|Usp16|ENSMUSG00000025616.8|ubiquitin specific peptidase 16
mm10_v2_chr7_-_100467149_100467190	0.682859	Nanog	ENSMUST00000184420.1|RP23-308M1.2|ENSMUSG00000099137.1|RP23-308M1.2
mm10_v2_chr12_+_72441852_72441866	0.646303	Nanog	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr11_-_102406783_102406955	0.636077	Nanog	ENSMUST00000155104.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39 	ENSMUST00000130436.1|Slc25a39|ENSMUSG00000018677.3|solute carrier family 25, member 39
mm10_v2_chr2_+_115581667_115581743	0.634493	Nanog	ENSMUST00000166472.1|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040 	ENSMUST00000110918.2|BC052040|ENSMUSG00000040282.7|cDNA sequence BC052040
mm10_v2_chr7_+_89404356_89404367	0.630848	Nanog	ENSMUST00000058755.3|Fzd4|ENSMUSG00000049791.3|frizzled homolog 4 (Drosophila)
mm10_v2_chr9_+_108490676_108490692	0.626981	Nanog	ENSMUST00000178075.1|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000085044.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000166103.2|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19 	ENSMUST00000006854.7|Usp19|ENSMUSG00000006676.10|ubiquitin specific peptidase 19
mm10_v2_chr10_+_77622363_77622378	0.602678	Nanog	ENSMUST00000172772.1|Ube2g2|ENSMUSG00000009293.11|ubiquitin-conjugating enzyme E2G 2
mm10_v2_chr16_+_19760902_19761054	0.601037	Nanog	ENSMUST00000119468.1|B3gnt5|ENSMUSG00000022686.8|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
mm10_v2_chr7_-_6011010_6011010	0.592526	Nanog	ENSMUST00000086338.1|Vmn1r65|ENSMUSG00000066850.1|vomeronasal 1 receptor 65
mm10_v2_chr6_-_39725448_39725478	0.589748	Nanog	ENSMUST00000002487.8|Braf|ENSMUSG00000002413.9|Braf transforming gene
mm10_v2_chr6_-_8259098_8259173	0.587799	Nanog	ENSMUST00000012627.4|Rpa3|ENSMUSG00000012483.4|replication protein A3
mm10_v2_chr4_+_129336012_129336041	0.587555	Nanog	ENSMUST00000119480.1|Zbtb8os|ENSMUSG00000057572.9|zinc finger and BTB domain containing 8 opposite strand
mm10_v2_chr11_-_101095367_101095439	0.584841	Nanog	ENSMUST00000019447.8|Psmc3ip|ENSMUSG00000019303.8|proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
mm10_v2_chr19_+_7557452_7557465	0.571914	Nanog	ENSMUST00000025925.4|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI 	ENSMUST00000136465.1|Pla2g16|ENSMUSG00000060675.7|phospholipase A2, group XVI
mm10_v2_chr5_+_63812447_63812538	0.570462	Nanog	ENSMUST00000081747.3|0610040J01Rik|ENSMUSG00000060512.3|RIKEN cDNA 0610040J01 gene
mm10_v2_chr12_-_101958148_101958246	0.569118	Nanog	ENSMUST00000159883.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000160251.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000161011.1|Atxn3|ENSMUSG00000021189.5|ataxin 3 	ENSMUST00000021606.5|Atxn3|ENSMUSG00000021189.5|ataxin 3
mm10_v2_chr2_+_69897255_69897303	0.553388	Nanog	ENSMUST00000131553.1|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chr18_+_24205303_24205348	0.545814	Nanog	ENSMUST00000000430.7|Galnt1|ENSMUSG00000000420.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
mm10_v2_chr14_-_26534870_26534931	0.544116	Nanog	ENSMUST00000139075.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein 	ENSMUST00000102956.1|Slmap|ENSMUSG00000021870.11|sarcolemma associated protein
mm10_v2_chr4_-_149454971_149454986	0.532106	Nanog	ENSMUST00000030848.2|Rbp7|ENSMUSG00000028996.3|retinol binding protein 7, cellular
mm10_v2_chr14_+_56887795_56887795	0.522034	Nanog	ENSMUST00000022511.8|Zmym2|ENSMUSG00000021945.8|zinc finger, MYM-type 2
mm10_v2_chr1_+_169969409_169969454	0.511934	Nanog	ENSMUST00000180638.1|3110045C21Rik|ENSMUSG00000097503.1|RIKEN cDNA 3110045C21 gene
mm10_v2_chr5_-_99978914_99978966	0.511121	Nanog	ENSMUST00000112939.3|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000171786.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000072750.6|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000019128.8|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D 	ENSMUST00000172361.1|Hnrnpd|ENSMUSG00000000568.9|heterogeneous nuclear ribonucleoprotein D
mm10_v2_chr1_+_174501796_174501843	0.503905	Nanog	ENSMUST00000030039.7|Fmn2|ENSMUSG00000028354.8|formin 2
mm10_v2_chr1_-_60566708_60566769	0.497979	Nanog	ENSMUST00000027168.5|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000090293.4|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 	ENSMUST00000140485.1|Raph1|ENSMUSG00000026014.9|Ras association (RalGDS/AF-6) and pleckstrin homology domains 1
mm10_v2_chr11_-_23895208_23895280	0.497823	Nanog	ENSMUST00000102863.2|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma 	ENSMUST00000020513.3|Papolg|ENSMUSG00000020273.7|poly(A) polymerase gamma
mm10_v2_chr6_+_38551786_38551851	0.494512	Nanog	ENSMUST00000161227.1|Luc7l2|ENSMUSG00000029823.10|LUC7-like 2 (S. cerevisiae)
mm10_v2_chr10_+_18469958_18469981	0.49433	Nanog	ENSMUST00000162891.1|Nhsl1|ENSMUSG00000039835.9|NHS-like 1 	ENSMUST00000100054.3|Nhsl1|ENSMUSG00000039835.9|NHS-like 1
mm10_v2_chr7_-_130547358_130547386	0.479252	Nanog	ENSMUST00000160289.1|Nsmce4a|ENSMUSG00000040331.9|non-SMC element 4 homolog A (S. cerevisiae)
mm10_v2_chr4_+_107968332_107968424	0.476923	Nanog	ENSMUST00000106713.3|Slc1a7|ENSMUSG00000008932.9|solute carrier family 1 (glutamate transporter), member 7
mm10_v2_chr9_-_106891401_106891438	0.474246	Nanog	ENSMUST00000069036.7|Manf|ENSMUSG00000032575.10|mesencephalic astrocyte-derived neurotrophic factor
mm10_v2_chr8_+_78509319_78509399	0.470911	Nanog	ENSMUST00000034111.8|Slc10a7|ENSMUSG00000031684.10|solute carrier family 10 (sodium/bile acid cotransporter family), member 7
mm10_v2_chr2_+_112379204_112379253	0.469408	Nanog	ENSMUST00000028552.3|Katnbl1|ENSMUSG00000027132.3|katanin p80 subunit B like 1
mm10_v2_chr3_+_108653931_108653964	0.467213	Nanog	ENSMUST00000029483.8|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1 	ENSMUST00000124384.1|Clcc1|ENSMUSG00000027884.10|chloride channel CLIC-like 1
mm10_v2_chr4_+_20008357_20008451	0.455471	Nanog	ENSMUST00000117632.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein 	ENSMUST00000098244.1|Ttpa|ENSMUSG00000073988.7|tocopherol (alpha) transfer protein
mm10_v2_chr2_-_37703845_37703885	0.453773	Nanog	ENSMUST00000155237.1|Strbp|ENSMUSG00000026915.10|spermatid perinuclear RNA binding protein
mm10_v2_chr3_-_146499721_146499803	0.453376	Nanog	ENSMUST00000029839.4|Spata1|ENSMUSG00000028188.7|spermatogenesis associated 1
mm10_v2_chr7_+_3629985_3630037	0.447192	Nanog	ENSMUST00000008517.6|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast) 	ENSMUST00000179769.1|Prpf31|ENSMUSG00000008373.10|PRP31 pre-mRNA processing factor 31 homolog (yeast)
mm10_v2_chr1_+_93512079_93512125	0.429413	Nanog	ENSMUST00000120301.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000041983.4|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2 	ENSMUST00000122402.1|Farp2|ENSMUSG00000034066.7|FERM, RhoGEF and pleckstrin domain protein 2
mm10_v2_chr11_+_115154139_115154194	0.428391	Nanog	ENSMUST00000021076.5|Rab37|ENSMUSG00000020732.7|RAB37, member of RAS oncogene family
mm10_v2_chr13_+_111686303_111686351	0.418439	Nanog	ENSMUST00000047412.4|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3 	ENSMUST00000109271.2|Mier3|ENSMUSG00000032727.7|mesoderm induction early response 1, family member 3
mm10_v2_chr2_-_86347764_86347764	0.414515	Nanog	ENSMUST00000099894.2|Olfr1055|ENSMUSG00000075189.2|olfactory receptor 1055
mm10_v2_chr3_+_10088173_10088173	0.411763	Nanog	ENSMUST00000061419.7|Gm9833|ENSMUSG00000049230.7|predicted gene 9833
mm10_v2_chr10_+_75037066_75037100	0.406494	Nanog	ENSMUST00000147802.1|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family 	ENSMUST00000020391.5|Rab36|ENSMUSG00000020175.7|RAB36, member RAS oncogene family
mm10_v2_chr11_+_86484647_86484716	0.398172	Nanog	ENSMUST00000020827.6|Rnft1|ENSMUSG00000020521.7|ring finger protein, transmembrane 1
mm10_v2_chr18_+_34736359_34736359	0.389995	Nanog	ENSMUST00000105038.2|Gm3550|ENSMUSG00000078240.2|predicted gene 3550
mm10_v2_chr7_+_103550368_103550368	0.380439	Nanog	ENSMUST00000106888.1|Olfr613|ENSMUSG00000078624.2|olfactory receptor 613
mm10_v2_chr11_+_95712673_95712673	0.366046	Nanog	ENSMUST00000107717.1|Zfp652|ENSMUSG00000075595.3|zinc finger protein 652
mm10_v2_chr3_+_88965812_88965812	0.362077	Nanog	ENSMUST00000090933.4|Ash1l|ENSMUSG00000028053.7|ash1 (absent, small, or homeotic)-like (Drosophila)
mm10_v2_chr8_-_120589304_120589304	0.356679	Nanog	ENSMUST00000034278.5|Gins2|ENSMUSG00000031821.5|GINS complex subunit 2 (Psf2 homolog)
mm10_v2_chr13_-_104178399_104178480	0.343594	Nanog	ENSMUST00000179891.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000022224.9|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000141557.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13 	ENSMUST00000091264.1|Trappc13|ENSMUSG00000078936.1|trafficking protein particle complex 13 	ENSMUST00000144060.1|Trappc13|ENSMUSG00000021711.10|trafficking protein particle complex 13
mm10_v2_chr5_-_103977360_103977403	0.34052	Nanog	ENSMUST00000048118.8|Hsd17b13|ENSMUSG00000034528.9|hydroxysteroid (17-beta) dehydrogenase 13
mm10_v2_chr3_+_114030532_114030571	0.337789	Nanog	ENSMUST00000123619.1|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1 	ENSMUST00000092155.5|Col11a1|ENSMUSG00000027966.13|collagen, type XI, alpha 1
mm10_v2_chr8_-_36732897_36733054	0.333947	Nanog	ENSMUST00000098826.3|Dlc1|ENSMUSG00000031523.10|deleted in liver cancer 1
mm10_v2_chr3_+_37312514_37312575	0.328358	Nanog	ENSMUST00000057975.7|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human) 	ENSMUST00000108121.3|Bbs12|ENSMUSG00000051444.9|Bardet-Biedl syndrome 12 (human)
mm10_v2_chr2_+_32363680_32363810	0.321156	Nanog	ENSMUST00000113331.1|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1 	ENSMUST00000113338.2|Ciz1|ENSMUSG00000039205.10|CDKN1A interacting zinc finger protein 1
mm10_v2_chr10_+_33905015_33905111	0.318791	Nanog	ENSMUST00000169670.1|Rsph4a|ENSMUSG00000039552.7|radial spoke head 4 homolog A (Chlamydomonas)
mm10_v2_chr7_-_141655319_141655395	0.317401	Nanog	ENSMUST00000062451.7|Muc6|ENSMUSG00000048191.9|mucin 6, gastric
mm10_v2_chr9_+_113930934_113930987	0.316604	Nanog	ENSMUST00000084885.5|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1 	ENSMUST00000009885.7|Ubp1|ENSMUSG00000009741.8|upstream binding protein 1
mm10_v2_chr3_-_37312418_37312465	0.315604	Nanog	ENSMUST00000075537.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000071400.6|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000102955.4|Cetn4|ENSMUSG00000045031.12|centrin 4 	ENSMUST00000140956.1|Cetn4|ENSMUSG00000045031.12|centrin 4
mm10_v2_chr2_+_69897220_69897247	0.315412	Nanog	ENSMUST00000055758.9|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3 	ENSMUST00000112251.2|Ubr3|ENSMUSG00000044308.11|ubiquitin protein ligase E3 component n-recognin 3
mm10_v2_chrX_-_153037549_153037581	0.30716	Nanog	ENSMUST00000051484.3|Mageh1|ENSMUSG00000047238.3|melanoma antigen, family H, 1
mm10_v2_chr19_-_53464721_53464833	0.293046	Nanog	ENSMUST00000180489.1|5830416P10Rik|ENSMUSG00000097636.1|RIKEN cDNA 5830416P10 gene
mm10_v2_chr1_+_135584773_135584773	0.292065	Nanog	ENSMUST00000067468.4|Gm4793|ENSMUSG00000054412.4|predicted gene 4793
mm10_v2_chr9_+_92309362_92309386	0.285885	Nanog	ENSMUST00000098477.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene 	ENSMUST00000150594.1|1700057G04Rik|ENSMUSG00000074139.2|RIKEN cDNA 1700057G04 gene
mm10_v2_chr16_+_13671980_13672032	0.285072	Nanog	ENSMUST00000069281.7|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr7_-_90475971_90476003	0.28265	Nanog	ENSMUST00000032843.7|Tmem126b|ENSMUSG00000030614.7|transmembrane protein 126B
mm10_v2_chr12_-_56345862_56345894	0.279414	Nanog	ENSMUST00000021416.7|Mbip|ENSMUSG00000021028.7|MAP3K12 binding inhibitory protein 1
mm10_v2_chr7_+_119561699_119561726	0.27706	Nanog	ENSMUST00000167935.2|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2 	ENSMUST00000130583.1|Acsm2|ENSMUSG00000030945.10|acyl-CoA synthetase medium-chain family member 2
mm10_v2_chr17_+_35439155_35439195	0.275393	Nanog	ENSMUST00000071951.6|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000078205.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000116598.3|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7 	ENSMUST00000076256.7|H2-Q7|ENSMUSG00000060550.9|histocompatibility 2, Q region locus 7
mm10_v2_chr3_+_79884496_79884571	0.270215	Nanog	ENSMUST00000118853.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr17_-_43543639_43543639	0.266712	Nanog	ENSMUST00000178772.1|Ankrd66|ENSMUSG00000096140.1|ankyrin repeat domain 66
mm10_v2_chr19_+_6046576_6046662	0.264688	Nanog	ENSMUST00000138532.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000129081.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin 	ENSMUST00000156550.1|Syvn1|ENSMUSG00000024807.11|synovial apoptosis inhibitor 1, synoviolin
mm10_v2_chr19_-_56822161_56822220	0.262785	Nanog	ENSMUST00000118592.1|A630007B06Rik|ENSMUSG00000035173.8|RIKEN cDNA A630007B06 gene
mm10_v2_chr7_-_6730412_6730431	0.255736	Nanog	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr1_-_172082757_172082795	0.249004	Nanog	ENSMUST00000003550.4|Ncstn|ENSMUSG00000003458.6|nicastrin
mm10_v2_chr4_-_116708312_116708406	0.234137	Nanog	ENSMUST00000030453.4|Mmachc|ENSMUSG00000028690.4|methylmalonic aciduria cblC type, with homocystinuria
mm10_v2_chr19_-_45783512_45783558	0.231839	Nanog	ENSMUST00000026243.3|Mgea5|ENSMUSG00000025220.7|meningioma expressed antigen 5 (hyaluronidase)
mm10_v2_chr4_-_11386757_11386783	0.222736	Nanog	ENSMUST00000108313.1|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1 	ENSMUST00000108311.2|Esrp1|ENSMUSG00000040728.9|epithelial splicing regulatory protein 1
mm10_v2_chr11_+_75532099_75532125	0.216255	Nanog	ENSMUST00000169547.2|Slc43a2|ENSMUSG00000038178.10|solute carrier family 43, member 2
mm10_v2_chr2_-_176149825_176149825	0.216223	Nanog	ENSMUST00000109049.3|Gm2004|ENSMUSG00000095648.1|predicted gene 2004 	ENSMUST00000179349.1|Gm2004|ENSMUSG00000095648.1|predicted gene 2004
mm10_v2_chr10_-_117224480_117224507	0.213672	Nanog	ENSMUST00000020382.6|Yeats4|ENSMUSG00000020171.7|YEATS domain containing 4
mm10_v2_chr9_-_20959785_20959888	0.196342	Nanog	ENSMUST00000177754.1|Dnmt1|ENSMUSG00000004099.9|DNA methyltransferase (cytosine-5) 1
mm10_v2_chr15_+_80255184_80255263	0.191888	Nanog	ENSMUST00000109605.3|Atf4|ENSMUSG00000042406.7|activating transcription factor 4
mm10_v2_chr16_+_13671858_13671918	0.19184	Nanog	ENSMUST00000023365.6|Bfar|ENSMUSG00000022684.8|bifunctional apoptosis regulator
mm10_v2_chr7_+_101896340_101896431	0.187206	Nanog	ENSMUST00000035395.7|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000106973.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15 	ENSMUST00000144207.1|Anapc15|ENSMUSG00000030649.11|anaphase prompoting complex C subunit 15
mm10_v2_chr11_-_107337556_107337637	0.172054	Nanog	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr5_+_123510460_123510460	0.16699	Nanog	ENSMUST00000031384.5|B3gnt4|ENSMUSG00000029431.5|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4
mm10_v2_chr16_+_13358375_13358439	0.164157	Nanog	ENSMUST00000149359.1|Mkl2|ENSMUSG00000009569.8|MKL/myocardin-like 2
mm10_v2_chr18_-_15718046_15718046	0.154226	Nanog	ENSMUST00000053017.6|Chst9|ENSMUSG00000047161.6|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9
mm10_v2_chr17_-_57247632_57247694	0.144164	Nanog	ENSMUST00000005975.6|Gpr108|ENSMUSG00000005823.8|G protein-coupled receptor 108
mm10_v2_chr17_+_21691860_21691860	0.137145	Nanog	ENSMUST00000072133.4|Gm10226|ENSMUSG00000067929.3|predicted gene 10226
mm10_v2_chr17_+_7170101_7170132	0.13378	Nanog	ENSMUST00000024575.6|Rps6ka2|ENSMUSG00000023809.9|ribosomal protein S6 kinase, polypeptide 2
mm10_v2_chr2_+_130576170_130576176	0.132926	Nanog	ENSMUST00000028764.5|Oxt|ENSMUSG00000027301.7|oxytocin
mm10_v2_chr3_+_121291725_121291817	0.128974	Nanog	ENSMUST00000039442.7|Alg14|ENSMUSG00000039887.7|asparagine-linked glycosylation 14
mm10_v2_chr3_+_79884576_79884597	0.120591	Nanog	ENSMUST00000145992.1|Fam198b|ENSMUSG00000027955.10|family with sequence similarity 198, member B
mm10_v2_chr17_-_47834682_47834691	0.118178	Nanog	ENSMUST00000066368.6|Mdfi|ENSMUSG00000032717.8|MyoD family inhibitor
mm10_v2_chr10_-_128626464_128626520	0.115138	Nanog	ENSMUST00000026420.5|Rps26|ENSMUSG00000025362.5|ribosomal protein S26
mm10_v2_chrX_-_56822308_56822346	0.110006	Nanog	ENSMUST00000135542.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3 	ENSMUST00000114766.1|Mtap7d3|ENSMUSG00000067878.7|MAP7 domain containing 3
mm10_v2_chr3_-_49757257_49757316	0.0993182	Nanog	ENSMUST00000035931.7|Pcdh18|ENSMUSG00000037892.8|protocadherin 18
mm10_v2_chr1_+_153874335_153874354	0.0977006	Nanog	ENSMUST00000055314.3|Gm5531|ENSMUSG00000043282.3|predicted gene 5531
mm10_v2_chr7_+_30321740_30321774	0.0894182	Nanog	ENSMUST00000098585.3|E130208F15Rik|ENSMUSG00000074210.3|RIKEN cDNA E130208F15 gene
mm10_v2_chr5_-_28467093_28467109	0.089406	Nanog	ENSMUST00000002708.3|Shh|ENSMUSG00000002633.3|sonic hedgehog
mm10_v2_chr13_-_9765137_9765321	0.0817606	Nanog	ENSMUST00000062658.8|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000130151.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000110636.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11 	ENSMUST00000152725.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr13_-_9764943_9764994	0.0774593	Nanog	ENSMUST00000110634.1|Zmynd11|ENSMUSG00000021156.10|zinc finger, MYND domain containing 11
mm10_v2_chr9_+_21955747_21955769	0.0768436	Nanog	ENSMUST00000053583.5|Swsap1|ENSMUSG00000051238.5|SWIM type zinc finger 7 associated protein 1
mm10_v2_chr6_+_83185946_83186151	0.070267	Nanog	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr10_+_69785507_69785525	0.062364	Nanog	ENSMUST00000182993.1|Ank3|ENSMUSG00000069601.7|ankyrin 3, epithelial
mm10_v2_chr19_-_43524462_43524605	0.0599209	Nanog	ENSMUST00000026196.7|Got1|ENSMUSG00000025190.7|glutamate oxaloacetate transaminase 1, soluble
mm10_v2_chr17_-_25833361_25833402	0.0549056	Nanog	ENSMUST00000044911.8|Stub1|ENSMUSG00000039615.8|STIP1 homology and U-Box containing protein 1
mm10_v2_chr11_-_94321957_94321988	0.0439241	Nanog	ENSMUST00000166312.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107821.2|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000021226.7|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae) 	ENSMUST00000107820.1|Luc7l3|ENSMUSG00000020863.9|LUC7-like 3 (S. cerevisiae)
mm10_v2_chr19_-_50030735_50030735	0.0388216	Nanog	ENSMUST00000071866.1|Rpl13a-ps1|ENSMUSG00000062083.1|ribosomal protein 13A, pseudogene 1
mm10_v2_chr6_+_29348069_29348123	0.0359429	Nanog	ENSMUST00000173216.1|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000031779.10|Calu|ENSMUSG00000029767.10|calumenin 	ENSMUST00000090481.7|Calu|ENSMUSG00000029767.10|calumenin
mm10_v2_chr17_+_35841668_35841683	0.0358409	Nanog	ENSMUST00000174124.1|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr12_-_113330518_113330523	0.02838	Nanog	ENSMUST00000103420.1|Ighg1|ENSMUSG00000076614.2|immunoglobulin heavy constant gamma 1 (G1m marker)
mm10_v2_chr14_-_26971232_26971232	0.0265637	Nanog	ENSMUST00000036570.4|Appl1|ENSMUSG00000040760.4|adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1
mm10_v2_chr5_+_115011111_115011208	0.026331	Nanog	ENSMUST00000031530.5|Sppl3|ENSMUSG00000029550.8|signal peptide peptidase 3
mm10_v2_chr4_-_129261394_129261406	0.0252882	Nanog	ENSMUST00000145261.1|C77080|ENSMUSG00000050390.6|expressed sequence C77080
mm10_v2_chr17_+_35841491_35841515	0.0232621	Nanog	ENSMUST00000082337.6|Mdc1|ENSMUSG00000061607.8|mediator of DNA damage checkpoint 1
mm10_v2_chr1_+_131153175_131153186	0.0179174	Nanog	ENSMUST00000112446.2|Eif2d|ENSMUSG00000026427.10|eukaryotic translation initiation factor 2D 	ENSMUST00000068805.7|Eif2d|ENSMUSG00000026427.10|eukaryotic translation initiation factor 2D 	ENSMUST00000068791.4|Eif2d|ENSMUSG00000026427.10|eukaryotic translation initiation factor 2D
mm10_v2_chr3_-_123672321_123672400	0.0101395	Nanog	ENSMUST00000172537.1|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 	ENSMUST00000029602.6|Ndst3|ENSMUSG00000027977.9|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
mm10_v2_chr3_-_144760841_144760868	0.00805113	Nanog	ENSMUST00000059091.5|Clca1|ENSMUSG00000056025.6|chloride channel calcium activated 1
mm10_v2_chr17_+_27839974_27840119	0.00645617	Nanog	ENSMUST00000071006.7|Snrpc|ENSMUSG00000024217.9|U1 small nuclear ribonucleoprotein C
mm10_v2_chr2_-_156144138_156144192	0.0051103	Nanog	ENSMUST00000109600.1|Nfs1|ENSMUSG00000027618.11|nitrogen fixation gene 1 (S. cerevisiae) 	ENSMUST00000029147.9|Nfs1|ENSMUSG00000027618.11|nitrogen fixation gene 1 (S. cerevisiae)
mm10_v2_chr15_+_89089073_89089111	0.0019178	Nanog	ENSMUST00000082439.4|Selo|ENSMUSG00000035757.10|selenoprotein O
