mm10_v2_chr18_+_60925612_60925639	27.7679	Rfx3_Rfx1_Rfx4	ENSMUST00000102888.3|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha 	ENSMUST00000025519.4|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chrX_+_7919816_7919905	26.1509	Rfx3_Rfx1_Rfx4	ENSMUST00000041096.3|Pcsk1n|ENSMUSG00000039278.10|proprotein convertase subtilisin/kexin type 1 inhibitor
mm10_v2_chr15_+_98167806_98167873	24.1102	Rfx3_Rfx1_Rfx4	ENSMUST00000031914.4|AI836003|ENSMUSG00000029875.4|expressed sequence AI836003
mm10_v2_chr7_-_140082246_140082301	18.937	Rfx3_Rfx1_Rfx4	ENSMUST00000166758.2|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr7_-_31051431_31051488	18.669	Rfx3_Rfx1_Rfx4	ENSMUST00000073892.4|Fxyd7|ENSMUSG00000036578.6|FXYD domain-containing ion transport regulator 7
mm10_v2_chr4_-_119415494_119415522	18.5238	Rfx3_Rfx1_Rfx4	ENSMUST00000063642.2|Ccdc30|ENSMUSG00000028637.9|coiled-coil domain containing 30
mm10_v2_chr5_+_24985840_24985862	18.3583	Rfx3_Rfx1_Rfx4	ENSMUST00000075081.6|1500035N22Rik|ENSMUSG00000059631.6|RIKEN cDNA 1500035N22 gene
mm10_v2_chr7_-_140082489_140082556	18.0845	Rfx3_Rfx1_Rfx4	ENSMUST00000026541.7|Caly|ENSMUSG00000025468.8|calcyon neuron-specific vesicular protein
mm10_v2_chr7_-_4546567_4546567	14.4419	Rfx3_Rfx1_Rfx4	ENSMUST00000065957.5|Syt5|ENSMUSG00000004961.6|synaptotagmin V
mm10_v2_chr7_+_99268338_99268388	14.1261	Rfx3_Rfx1_Rfx4	ENSMUST00000107100.2|Map6|ENSMUSG00000055407.7|microtubule-associated protein 6
mm10_v2_chr9_+_59589288_59589353	14.0677	Rfx3_Rfx1_Rfx4	ENSMUST00000121266.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000118164.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr11_-_105944412_105944518	13.7853	Rfx3_Rfx1_Rfx4	ENSMUST00000019734.4|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000184269.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561 	ENSMUST00000150563.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr12_-_84148449_84148499	13.5983	Rfx3_Rfx1_Rfx4	ENSMUST00000061425.2|Pnma1|ENSMUSG00000054383.2|paraneoplastic antigen MA1
mm10_v2_chr10_-_81472859_81473127	13.5125	Rfx3_Rfx1_Rfx4	ENSMUST00000147524.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5 	ENSMUST00000119060.1|Celf5|ENSMUSG00000034818.10|CUGBP, Elav-like family member 5
mm10_v2_chr1_-_60043087_60043175	13.0389	Rfx3_Rfx1_Rfx4	ENSMUST00000027172.6|Ica1l|ENSMUSG00000026018.6|islet cell autoantigen 1-like
mm10_v2_chr17_+_34629533_34629620	12.918	Rfx3_Rfx1_Rfx4	ENSMUST00000015620.6|Prrt1|ENSMUSG00000015476.6|proline-rich transmembrane protein 1
mm10_v2_chr15_+_54745702_54745702	11.9124	Rfx3_Rfx1_Rfx4	ENSMUST00000050027.8|Nov|ENSMUSG00000037362.8|nephroblastoma overexpressed gene
mm10_v2_chr11_-_105944128_105944223	11.4088	Rfx3_Rfx1_Rfx4	ENSMUST00000184086.1|Cyb561|ENSMUSG00000019590.10|cytochrome b-561
mm10_v2_chr19_-_57197435_57197460	11.2076	Rfx3_Rfx1_Rfx4	ENSMUST00000111550.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr19_-_57197377_57197417	11.0258	Rfx3_Rfx1_Rfx4	ENSMUST00000111546.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr7_+_16959714_16959800	10.9886	Rfx3_Rfx1_Rfx4	ENSMUST00000038163.6|Pnmal1|ENSMUSG00000041141.6|PNMA-like 1
mm10_v2_chr19_-_57197556_57197631	10.9812	Rfx3_Rfx1_Rfx4	ENSMUST00000099294.2|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr1_+_66386968_66386999	10.9741	Rfx3_Rfx1_Rfx4	ENSMUST00000145419.1|Map2|ENSMUSG00000015222.11|microtubule-associated protein 2
mm10_v2_chr11_+_70029742_70029837	10.9109	Rfx3_Rfx1_Rfx4	ENSMUST00000132597.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr19_-_57197496_57197536	10.8764	Rfx3_Rfx1_Rfx4	ENSMUST00000111544.1|Ablim1|ENSMUSG00000025085.10|actin-binding LIM protein 1
mm10_v2_chr16_-_16829276_16829349	10.7661	Rfx3_Rfx1_Rfx4	ENSMUST00000023468.5|Spag6|ENSMUSG00000022783.5|sperm associated antigen 6
mm10_v2_chr8_+_94772009_94772009	10.7132	Rfx3_Rfx1_Rfx4	ENSMUST00000034230.5|Cx3cl1|ENSMUSG00000031778.6|chemokine (C-X3-C motif) ligand 1
mm10_v2_chr19_-_46327121_46327156	10.4848	Rfx3_Rfx1_Rfx4	ENSMUST00000041391.4|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing 	ENSMUST00000096029.5|Psd|ENSMUSG00000037126.9|pleckstrin and Sec7 domain containing
mm10_v2_chr4_+_152338887_152338967	9.92302	Rfx3_Rfx1_Rfx4	ENSMUST00000005175.4|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr3_-_88458876_88459043	9.83986	Rfx3_Rfx1_Rfx4	ENSMUST00000147200.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000169222.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr4_+_152338619_152338709	9.77892	Rfx3_Rfx1_Rfx4	ENSMUST00000030775.5|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5 	ENSMUST00000164662.1|Chd5|ENSMUSG00000005045.10|chromodomain helicase DNA binding protein 5
mm10_v2_chr11_-_6606053_6606053	9.67626	Rfx3_Rfx1_Rfx4	ENSMUST00000045713.3|Nacad|ENSMUSG00000041073.4|NAC alpha domain containing
mm10_v2_chr15_-_33687840_33687883	9.66716	Rfx3_Rfx1_Rfx4	ENSMUST00000042021.3|Tspyl5|ENSMUSG00000038984.3|testis-specific protein, Y-encoded-like 5
mm10_v2_chr5_-_142550965_142551110	9.64913	Rfx3_Rfx1_Rfx4	ENSMUST00000129212.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000110785.1|Radil|ENSMUSG00000029576.11|Ras association and DIL domains 	ENSMUST00000063635.8|Radil|ENSMUSG00000029576.11|Ras association and DIL domains
mm10_v2_chr8_-_95142477_95142577	9.6283	Rfx3_Rfx1_Rfx4	ENSMUST00000034240.7|Kifc3|ENSMUSG00000031788.7|kinesin family member C3 	ENSMUST00000169748.1|Kifc3|ENSMUSG00000031788.7|kinesin family member C3
mm10_v2_chr7_+_3303503_3303565	9.45386	Rfx3_Rfx1_Rfx4	ENSMUST00000100301.4|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr3_-_88459047_88459101	9.42004	Rfx3_Rfx1_Rfx4	ENSMUST00000165898.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A 	ENSMUST00000127436.1|Sema4a|ENSMUSG00000028064.11|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
mm10_v2_chr7_+_131966446_131966469	9.32282	Rfx3_Rfx1_Rfx4	ENSMUST00000045840.4|Gpr26|ENSMUSG00000040125.4|G protein-coupled receptor 26
mm10_v2_chr5_-_92042630_92042701	9.29719	Rfx3_Rfx1_Rfx4	ENSMUST00000113140.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase) 	ENSMUST00000113143.1|Cdkl2|ENSMUSG00000029403.8|cyclin-dependent kinase-like 2 (CDC2-related kinase)
mm10_v2_chr17_+_46254017_46254165	9.28952	Rfx3_Rfx1_Rfx4	ENSMUST00000095262.4|Lrrc73|ENSMUSG00000071073.4|leucine rich repeat containing 73
mm10_v2_chr10_-_13868779_13868874	9.18189	Rfx3_Rfx1_Rfx4	ENSMUST00000105534.3|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr5_+_120431770_120431905	9.15715	Rfx3_Rfx1_Rfx4	ENSMUST00000031591.7|Lhx5|ENSMUSG00000029595.7|LIM homeobox protein 5
mm10_v2_chr10_-_13868932_13869004	9.01431	Rfx3_Rfx1_Rfx4	ENSMUST00000019942.5|Aig1|ENSMUSG00000019806.7|androgen-induced 1 	ENSMUST00000162610.1|Aig1|ENSMUSG00000019806.7|androgen-induced 1
mm10_v2_chr13_+_24845122_24845186	8.89939	Rfx3_Rfx1_Rfx4	ENSMUST00000006893.8|D130043K22Rik|ENSMUSG00000006711.9|RIKEN cDNA D130043K22 gene
mm10_v2_chr19_+_47178820_47178997	8.75905	Rfx3_Rfx1_Rfx4	ENSMUST00000111808.3|Neurl1a|ENSMUSG00000006435.9|neuralized homolog 1A (Drosophila)
mm10_v2_chr7_+_45785331_45785390	8.6403	Rfx3_Rfx1_Rfx4	ENSMUST00000120005.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3 	ENSMUST00000123585.1|Lmtk3|ENSMUSG00000062044.7|lemur tyrosine kinase 3
mm10_v2_chr7_+_3303643_3303654	8.31869	Rfx3_Rfx1_Rfx4	ENSMUST00000172109.1|Prkcg|ENSMUSG00000078816.3|protein kinase C, gamma
mm10_v2_chr11_-_61453992_61454106	8.26841	Rfx3_Rfx1_Rfx4	ENSMUST00000060255.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000054927.7|Rnf112|ENSMUSG00000010086.11|ring finger protein 112 	ENSMUST00000102661.3|Rnf112|ENSMUSG00000010086.11|ring finger protein 112
mm10_v2_chr2_-_118256929_118256973	7.95151	Rfx3_Rfx1_Rfx4	ENSMUST00000028820.6|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1 	ENSMUST00000028821.3|Fsip1|ENSMUSG00000027344.7|fibrous sheath-interacting protein 1
mm10_v2_chr18_+_23803962_23804054	7.94845	Rfx3_Rfx1_Rfx4	ENSMUST00000025127.3|Mapre2|ENSMUSG00000024277.8|microtubule-associated protein, RP/EB family, member 2
mm10_v2_chr7_+_3390629_3390707	7.83421	Rfx3_Rfx1_Rfx4	ENSMUST00000182222.1|Cacng8|ENSMUSG00000053395.9|calcium channel, voltage-dependent, gamma subunit 8
mm10_v2_chr1_-_87510306_87510373	7.79501	Rfx3_Rfx1_Rfx4	ENSMUST00000027477.8|Ngef|ENSMUSG00000026259.8|neuronal guanine nucleotide exchange factor
mm10_v2_chr12_+_29528382_29528468	7.78415	Rfx3_Rfx1_Rfx4	ENSMUST00000049784.9|Myt1l|ENSMUSG00000061911.8|myelin transcription factor 1-like
mm10_v2_chr13_+_91461050_91461125	7.64413	Rfx3_Rfx1_Rfx4	ENSMUST00000004094.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2 	ENSMUST00000042122.8|Ssbp2|ENSMUSG00000003992.8|single-stranded DNA binding protein 2
mm10_v2_chr11_+_87760533_87760587	7.5054	Rfx3_Rfx1_Rfx4	ENSMUST00000039627.5|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1 	ENSMUST00000100644.3|Bzrap1|ENSMUSG00000034156.10|benzodiazepine receptor associated protein 1
mm10_v2_chr10_+_34297421_34297513	7.4526	Rfx3_Rfx1_Rfx4	ENSMUST00000047935.6|Tspyl4|ENSMUSG00000039485.6|TSPY-like 4
mm10_v2_chr15_+_89532816_89532890	7.41028	Rfx3_Rfx1_Rfx4	ENSMUST00000167173.1|Shank3|ENSMUSG00000022623.9|SH3/ankyrin domain gene 3
mm10_v2_chr5_-_103211251_103211334	7.3905	Rfx3_Rfx1_Rfx4	ENSMUST00000060871.5|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112846.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000170792.1|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10 	ENSMUST00000112847.2|Mapk10|ENSMUSG00000046709.10|mitogen-activated protein kinase 10
mm10_v2_chr4_+_123183456_123183601	7.38429	Rfx3_Rfx1_Rfx4	ENSMUST00000126995.1|Hpcal4|ENSMUSG00000046093.3|hippocalcin-like 4
mm10_v2_chr1_+_161142706_161142767	7.34729	Rfx3_Rfx1_Rfx4	ENSMUST00000111608.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45 	ENSMUST00000052245.8|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr3_-_89245159_89245199	7.23367	Rfx3_Rfx1_Rfx4	ENSMUST00000090924.6|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr5_-_136170634_136170661	7.0834	Rfx3_Rfx1_Rfx4	ENSMUST00000041048.1|Orai2|ENSMUSG00000039747.7|ORAI calcium release-activated calcium modulator 2
mm10_v2_chr1_+_161142661_161142701	7.03805	Rfx3_Rfx1_Rfx4	ENSMUST00000125018.1|Ankrd45|ENSMUSG00000044835.9|ankyrin repeat domain 45
mm10_v2_chr2_+_121289589_121289606	6.93006	Rfx3_Rfx1_Rfx4	ENSMUST00000094639.3|Map1a|ENSMUSG00000027254.7|microtubule-associated protein 1 A
mm10_v2_chr11_-_74897052_74897094	6.8861	Rfx3_Rfx1_Rfx4	ENSMUST00000057631.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2 	ENSMUST00000081799.5|Sgsm2|ENSMUSG00000038351.8|small G protein signaling modulator 2
mm10_v2_chr7_+_16944645_16944720	6.86776	Rfx3_Rfx1_Rfx4	ENSMUST00000094807.5|Pnmal2|ENSMUSG00000070802.5|PNMA-like 2
mm10_v2_chr4_+_129960760_129960808	6.85957	Rfx3_Rfx1_Rfx4	ENSMUST00000139884.1|1700003M07Rik|ENSMUSG00000085389.1|RIKEN cDNA 1700003M07 gene
mm10_v2_chr4_+_137681663_137681719	6.75447	Rfx3_Rfx1_Rfx4	ENSMUST00000047243.5|Rap1gap|ENSMUSG00000041351.10|Rap1 GTPase-activating protein
mm10_v2_chr15_+_100761741_100761797	6.68294	Rfx3_Rfx1_Rfx4	ENSMUST00000023776.6|Slc4a8|ENSMUSG00000023032.6|solute carrier family 4 (anion exchanger), member 8
mm10_v2_chr13_+_55464237_55464319	6.65349	Rfx3_Rfx1_Rfx4	ENSMUST00000046533.7|Prr7|ENSMUSG00000034686.7|proline rich 7 (synaptic)
mm10_v2_chr3_+_13946368_13946379	6.52611	Rfx3_Rfx1_Rfx4	ENSMUST00000171075.1|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like 	ENSMUST00000108372.2|Ralyl|ENSMUSG00000039717.9|RALY RNA binding protein-like
mm10_v2_chr3_+_82358056_82358075	6.50156	Rfx3_Rfx1_Rfx4	ENSMUST00000091014.4|Map9|ENSMUSG00000033900.8|microtubule-associated protein 9
mm10_v2_chr5_-_115652974_115652992	6.45966	Rfx3_Rfx1_Rfx4	ENSMUST00000121746.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64 	ENSMUST00000118576.1|Ccdc64|ENSMUSG00000041609.10|coiled-coil domain containing 64
mm10_v2_chr3_-_89245005_89245031	6.42784	Rfx3_Rfx1_Rfx4	ENSMUST00000107464.1|Trim46|ENSMUSG00000042766.11|tripartite motif-containing 46
mm10_v2_chr17_+_27685197_27685233	6.4032	Rfx3_Rfx1_Rfx4	ENSMUST00000097360.2|Pacsin1|ENSMUSG00000040276.8|protein kinase C and casein kinase substrate in neurons 1
mm10_v2_chr12_-_69790660_69790735	6.38173	Rfx3_Rfx1_Rfx4	ENSMUST00000021377.4|Cdkl1|ENSMUSG00000020990.4|cyclin-dependent kinase-like 1 (CDC2-related kinase)
mm10_v2_chr4_+_57434247_57434368	6.35025	Rfx3_Rfx1_Rfx4	ENSMUST00000102905.1|Palm2|ENSMUSG00000090053.3|paralemmin 2
mm10_v2_chr17_-_85090204_85090275	6.10833	Rfx3_Rfx1_Rfx4	ENSMUST00000072406.3|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like 	ENSMUST00000171795.1|Prepl|ENSMUSG00000024127.8|prolyl endopeptidase-like
mm10_v2_chr1_-_84696182_84696221	6.04284	Rfx3_Rfx1_Rfx4	ENSMUST00000049126.6|Dner|ENSMUSG00000036766.6|delta/notch-like EGF-related receptor
mm10_v2_chr2_+_71981184_71981287	6.00681	Rfx3_Rfx1_Rfx4	ENSMUST00000090826.5|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4 	ENSMUST00000102698.3|Rapgef4|ENSMUSG00000049044.10|Rap guanine nucleotide exchange factor (GEF) 4
mm10_v2_chr7_+_139894696_139894854	5.99307	Rfx3_Rfx1_Rfx4	ENSMUST00000151421.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000053445.9|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1 	ENSMUST00000121839.1|Kndc1|ENSMUSG00000066129.8|kinase non-catalytic C-lobe domain (KIND) containing 1
mm10_v2_chr9_-_60688118_60688184	5.96408	Rfx3_Rfx1_Rfx4	ENSMUST00000114034.2|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000065603.5|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr12_+_5411641_5411641	5.9152	Rfx3_Rfx1_Rfx4	ENSMUST00000163627.1|2810032G03Rik|ENSMUSG00000037735.6|RIKEN cDNA 2810032G03 gene
mm10_v2_chr11_+_49794157_49794187	5.90527	Rfx3_Rfx1_Rfx4	ENSMUST00000020629.4|Gfpt2|ENSMUSG00000020363.6|glutamine fructose-6-phosphate transaminase 2
mm10_v2_chr8_-_22805596_22805654	5.8612	Rfx3_Rfx1_Rfx4	ENSMUST00000163739.1|Ap3m2|ENSMUSG00000031539.5|adaptor-related protein complex 3, mu 2 subunit
mm10_v2_chr15_-_79062866_79062941	5.74881	Rfx3_Rfx1_Rfx4	ENSMUST00000151889.1|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54 	ENSMUST00000040676.4|Ankrd54|ENSMUSG00000033055.4|ankyrin repeat domain 54
mm10_v2_chr9_-_106685653_106685674	5.74379	Rfx3_Rfx1_Rfx4	ENSMUST00000163441.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr2_-_5714490_5714538	5.69625	Rfx3_Rfx1_Rfx4	ENSMUST00000044009.7|Camk1d|ENSMUSG00000039145.10|calcium/calmodulin-dependent protein kinase ID
mm10_v2_chr9_-_29412204_29412277	5.69256	Rfx3_Rfx1_Rfx4	ENSMUST00000115237.1|Ntm|ENSMUSG00000059974.4|neurotrimin
mm10_v2_chr9_-_106685892_106685961	5.63993	Rfx3_Rfx1_Rfx4	ENSMUST00000169068.1|Tex264|ENSMUSG00000040813.9|testis expressed gene 264 	ENSMUST00000046735.4|Tex264|ENSMUSG00000040813.9|testis expressed gene 264
mm10_v2_chr5_+_21424934_21425013	5.63684	Rfx3_Rfx1_Rfx4	ENSMUST00000056045.4|Fam185a|ENSMUSG00000047221.5|family with sequence similarity 185, member A
mm10_v2_chr9_+_47530173_47530373	5.6215	Rfx3_Rfx1_Rfx4	ENSMUST00000114548.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000152459.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000143026.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000085909.2|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000114547.1|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1 	ENSMUST00000034581.3|Cadm1|ENSMUSG00000032076.12|cell adhesion molecule 1
mm10_v2_chr16_+_14906622_14906680	5.53328	Rfx3_Rfx1_Rfx4	ENSMUST00000090277.1|Efcab1|ENSMUSG00000068617.4|EF hand calcium binding domain 1
mm10_v2_chr7_+_133776857_133776942	5.52974	Rfx3_Rfx1_Rfx4	ENSMUST00000065359.5|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000151031.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1 	ENSMUST00000121560.1|Fank1|ENSMUSG00000053111.6|fibronectin type 3 and ankyrin repeat domains 1
mm10_v2_chr11_+_43474276_43474340	5.52679	Rfx3_Rfx1_Rfx4	ENSMUST00000173002.1|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2 	ENSMUST00000057679.3|C1qtnf2|ENSMUSG00000046491.4|C1q and tumor necrosis factor related protein 2
mm10_v2_chr13_+_42681513_42681564	5.47699	Rfx3_Rfx1_Rfx4	ENSMUST00000149235.1|Phactr1|ENSMUSG00000054728.10|phosphatase and actin regulator 1
mm10_v2_chr4_-_153482768_153482811	5.40715	Rfx3_Rfx1_Rfx4	ENSMUST00000105646.2|Ajap1|ENSMUSG00000039546.9|adherens junction associated protein 1
mm10_v2_chr8_-_106337987_106337996	5.34835	Rfx3_Rfx1_Rfx4	ENSMUST00000067512.7|Smpd3|ENSMUSG00000031906.8|sphingomyelin phosphodiesterase 3, neutral
mm10_v2_chr17_-_25837082_25837295	5.25649	Rfx3_Rfx1_Rfx4	ENSMUST00000183929.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000184865.1|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila) 	ENSMUST00000026831.7|Rhbdl1|ENSMUSG00000025735.7|rhomboid, veinlet-like 1 (Drosophila)
mm10_v2_chr7_+_126847908_126847962	5.2554	Rfx3_Rfx1_Rfx4	ENSMUST00000147257.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha 	ENSMUST00000139174.1|Doc2a|ENSMUSG00000052301.8|double C2, alpha
mm10_v2_chr10_+_80295930_80296003	5.24303	Rfx3_Rfx1_Rfx4	ENSMUST00000105359.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr9_+_59578192_59578337	5.24167	Rfx3_Rfx1_Rfx4	ENSMUST00000118549.1|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6 	ENSMUST00000034840.3|Celf6|ENSMUSG00000032297.5|CUGBP, Elav-like family member 6
mm10_v2_chr10_+_80299084_80299126	5.13989	Rfx3_Rfx1_Rfx4	ENSMUST00000154212.1|Apc2|ENSMUSG00000020135.7|adenomatosis polyposis coli 2
mm10_v2_chr3_-_126998408_126998463	4.99087	Rfx3_Rfx1_Rfx4	ENSMUST00000182764.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000044443.8|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr15_-_98953541_98953560	4.9864	Rfx3_Rfx1_Rfx4	ENSMUST00000097014.5|Tuba1a|ENSMUSG00000072235.5|tubulin, alpha 1A
mm10_v2_chr9_+_82829806_82829834	4.9015	Rfx3_Rfx1_Rfx4	ENSMUST00000113245.2|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1 	ENSMUST00000034783.4|Irak1bp1|ENSMUSG00000032251.6|interleukin-1 receptor-associated kinase 1 binding protein 1
mm10_v2_chr5_+_30711564_30711586	4.8822	Rfx3_Rfx1_Rfx4	ENSMUST00000114729.1|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr2_+_118663235_118663309	4.81817	Rfx3_Rfx1_Rfx4	ENSMUST00000099557.3|Pak6|ENSMUSG00000074923.4|p21 protein (Cdc42/Rac)-activated kinase 6
mm10_v2_chr2_-_30048827_30048891	4.68001	Rfx3_Rfx1_Rfx4	ENSMUST00000113711.2|Wdr34|ENSMUSG00000039715.8|WD repeat domain 34
mm10_v2_chr17_+_28142267_28142321	4.66007	Rfx3_Rfx1_Rfx4	ENSMUST00000043503.3|Scube3|ENSMUSG00000038677.7|signal peptide, CUB domain, EGF-like 3
mm10_v2_chr6_-_115838412_115838412	4.63537	Rfx3_Rfx1_Rfx4	ENSMUST00000032468.5|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12 	ENSMUST00000184428.1|Efcab12|ENSMUSG00000030321.9|EF-hand calcium binding domain 12
mm10_v2_chr18_+_60925644_60925725	4.63447	Rfx3_Rfx1_Rfx4	ENSMUST00000115297.1|Camk2a|ENSMUSG00000024617.10|calcium/calmodulin-dependent protein kinase II alpha
mm10_v2_chr10_+_106470281_106470367	4.62685	Rfx3_Rfx1_Rfx4	ENSMUST00000029404.9|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 	ENSMUST00000169303.1|Ppfia2|ENSMUSG00000053825.8|protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
mm10_v2_chrX_-_8132770_8132857	4.60304	Rfx3_Rfx1_Rfx4	ENSMUST00000130832.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000033506.6|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000115623.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13 	ENSMUST00000153839.1|Wdr13|ENSMUSG00000031166.7|WD repeat domain 13
mm10_v2_chr15_+_82256023_82256130	4.58555	Rfx3_Rfx1_Rfx4	ENSMUST00000143238.1|1500009C09Rik|ENSMUSG00000068099.4|RIKEN cDNA 1500009C09 gene
mm10_v2_chrX_+_36195938_36195946	4.58057	Rfx3_Rfx1_Rfx4	ENSMUST00000048067.3|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr5_+_30814722_30814776	4.57289	Rfx3_Rfx1_Rfx4	ENSMUST00000114724.1|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr8_-_119575143_119575205	4.5646	Rfx3_Rfx1_Rfx4	ENSMUST00000036049.4|Hsdl1|ENSMUSG00000034189.4|hydroxysteroid dehydrogenase like 1
mm10_v2_chr9_-_51008936_51009080	4.53629	Rfx3_Rfx1_Rfx4	ENSMUST00000176824.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000176663.1|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2 	ENSMUST00000041375.10|Sik2|ENSMUSG00000037112.10|salt inducible kinase 2
mm10_v2_chrX_+_136993147_136993216	4.4905	Rfx3_Rfx1_Rfx4	ENSMUST00000113067.1|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18 	ENSMUST00000101227.2|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr5_+_30711849_30711905	4.47852	Rfx3_Rfx1_Rfx4	ENSMUST00000088081.4|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5 	ENSMUST00000101442.3|Dpysl5|ENSMUSG00000029168.8|dihydropyrimidinase-like 5
mm10_v2_chr16_+_3909032_3909106	4.47712	Rfx3_Rfx1_Rfx4	ENSMUST00000124849.1|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr17_-_80290476_80290476	4.46993	Rfx3_Rfx1_Rfx4	ENSMUST00000086555.3|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 	ENSMUST00000038166.7|Dhx57|ENSMUSG00000035051.8|DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
mm10_v2_chr16_-_3909192_3909192	4.46345	Rfx3_Rfx1_Rfx4	ENSMUST00000181699.1|1700016D08Rik|ENSMUSG00000097179.1|RIKEN cDNA 1700016D08 gene
mm10_v2_chrX_+_36195950_36195959	4.46266	Rfx3_Rfx1_Rfx4	ENSMUST00000115257.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chrX_+_36195904_36195932	4.44695	Rfx3_Rfx1_Rfx4	ENSMUST00000115258.2|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr16_+_3908801_3909031	4.43459	Rfx3_Rfx1_Rfx4	ENSMUST00000145150.2|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1 	ENSMUST00000040881.7|Cluap1|ENSMUSG00000014232.8|clusterin associated protein 1
mm10_v2_chr3_-_127225847_127225915	4.39834	Rfx3_Rfx1_Rfx4	ENSMUST00000182726.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182779.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr5_-_137531204_137531297	4.38551	Rfx3_Rfx1_Rfx4	ENSMUST00000150063.2|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr5_+_30814571_30814641	4.37752	Rfx3_Rfx1_Rfx4	ENSMUST00000031058.8|Mapre3|ENSMUSG00000029166.8|microtubule-associated protein, RP/EB family, member 3
mm10_v2_chr7_-_118705708_118705786	4.36925	Rfx3_Rfx1_Rfx4	ENSMUST00000038791.8|Gde1|ENSMUSG00000033917.8|glycerophosphodiester phosphodiesterase 1
mm10_v2_chr12_+_72536342_72536396	4.27444	Rfx3_Rfx1_Rfx4	ENSMUST00000044352.6|Pcnxl4|ENSMUSG00000034501.6|pecanex-like 4 (Drosophila)
mm10_v2_chr13_+_43615710_43615788	4.24926	Rfx3_Rfx1_Rfx4	ENSMUST00000059986.2|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr8_-_64733534_64733554	4.21079	Rfx3_Rfx1_Rfx4	ENSMUST00000141021.1|Sc4mol|ENSMUSG00000031604.4|sterol-C4-methyl oxidase-like
mm10_v2_chr5_+_29195983_29196032	4.19949	Rfx3_Rfx1_Rfx4	ENSMUST00000160888.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000159272.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000001247.5|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000161398.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32 	ENSMUST00000160246.1|Rnf32|ENSMUSG00000029130.6|ring finger protein 32
mm10_v2_chr7_+_116504363_116504397	4.19138	Rfx3_Rfx1_Rfx4	ENSMUST00000032895.8|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr12_+_113140198_113140257	4.1703	Rfx3_Rfx1_Rfx4	ENSMUST00000084882.4|Crip2|ENSMUSG00000006356.6|cysteine rich protein 2
mm10_v2_chr13_-_92483996_92484037	4.16244	Rfx3_Rfx1_Rfx4	ENSMUST00000040106.7|Fam151b|ENSMUSG00000034334.7|family with sequence similarity 151, member B
mm10_v2_chr3_+_29082539_29082771	4.15913	Rfx3_Rfx1_Rfx4	ENSMUST00000119598.1|Egfem1|ENSMUSG00000063600.8|EGF-like and EMI domain containing 1 	ENSMUST00000118531.1|Egfem1|ENSMUSG00000063600.8|EGF-like and EMI domain containing 1
mm10_v2_chr9_-_110476637_110476694	4.15625	Rfx3_Rfx1_Rfx4	ENSMUST00000111934.1|Klhl18|ENSMUSG00000054792.9|kelch-like 18 	ENSMUST00000068025.6|Klhl18|ENSMUSG00000054792.9|kelch-like 18
mm10_v2_chr3_+_118433797_118433966	4.15174	Rfx3_Rfx1_Rfx4	ENSMUST00000180593.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181926.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181060.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871 	ENSMUST00000181310.1|Gm26871|ENSMUSG00000097311.1|predicted gene, 26871
mm10_v2_chr19_-_10304867_10304954	4.14366	Rfx3_Rfx1_Rfx4	ENSMUST00000039327.4|Dagla|ENSMUSG00000035735.4|diacylglycerol lipase, alpha
mm10_v2_chr11_+_53567361_53567526	4.08484	Rfx3_Rfx1_Rfx4	ENSMUST00000057330.8|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000120613.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000173744.1|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A 	ENSMUST00000118353.2|Kif3a|ENSMUSG00000018395.13|kinesin family member 3A
mm10_v2_chr7_+_126950518_126950584	4.06943	Rfx3_Rfx1_Rfx4	ENSMUST00000106335.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2 	ENSMUST00000146017.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_+_32629467_32629514	4.04656	Rfx3_Rfx1_Rfx4	ENSMUST00000068271.4|Ak1|ENSMUSG00000026817.8|adenylate kinase 1
mm10_v2_chr7_+_116504409_116504430	4.02618	Rfx3_Rfx1_Rfx4	ENSMUST00000183175.1|Nucb2|ENSMUSG00000030659.8|nucleobindin 2
mm10_v2_chr3_-_146770218_146770261	4.0141	Rfx3_Rfx1_Rfx4	ENSMUST00000106137.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr17_-_87446854_87446935	3.97972	Rfx3_Rfx1_Rfx4	ENSMUST00000040440.6|Calm2|ENSMUSG00000036438.6|calmodulin 2
mm10_v2_chr6_-_77979652_77979708	3.97811	Rfx3_Rfx1_Rfx4	ENSMUST00000161846.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000160894.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr11_-_76468396_76468473	3.93253	Rfx3_Rfx1_Rfx4	ENSMUST00000065028.7|Abr|ENSMUSG00000017631.12|active BCR-related gene
mm10_v2_chrX_+_36195968_36195993	3.9291	Rfx3_Rfx1_Rfx4	ENSMUST00000115256.1|Zcchc12|ENSMUSG00000036699.6|zinc finger, CCHC domain containing 12
mm10_v2_chr8_+_123212857_123212911	3.88744	Rfx3_Rfx1_Rfx4	ENSMUST00000060133.6|Spata33|ENSMUSG00000048478.6|spermatogenesis associated 33
mm10_v2_chrX_+_136993281_136993308	3.85987	Rfx3_Rfx1_Rfx4	ENSMUST00000033804.4|Zcchc18|ENSMUSG00000031428.5|zinc finger, CCHC domain containing 18
mm10_v2_chr9_-_121839460_121839465	3.85314	Rfx3_Rfx1_Rfx4	ENSMUST00000135986.2|Ccdc13|ENSMUSG00000079235.4|coiled-coil domain containing 13
mm10_v2_chr1_-_155417394_155417435	3.84399	Rfx3_Rfx1_Rfx4	ENSMUST00000111775.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1 	ENSMUST00000111774.1|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr19_+_45560569_45560644	3.78541	Rfx3_Rfx1_Rfx4	ENSMUST00000047057.7|Dpcd|ENSMUSG00000041035.7|deleted in primary ciliary dyskinesia
mm10_v2_chr3_-_127225917_127225959	3.78361	Rfx3_Rfx1_Rfx4	ENSMUST00000182064.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain 	ENSMUST00000182662.1|Ank2|ENSMUSG00000032826.10|ankyrin 2, brain
mm10_v2_chr9_+_63602650_63602703	3.77622	Rfx3_Rfx1_Rfx4	ENSMUST00000041551.7|Aagab|ENSMUSG00000037257.7|alpha- and gamma-adaptin binding protein
mm10_v2_chr7_+_126950837_126950966	3.71549	Rfx3_Rfx1_Rfx4	ENSMUST00000106332.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr2_+_145934800_145934816	3.68271	Rfx3_Rfx1_Rfx4	ENSMUST00000138774.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000152515.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000130168.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000133433.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene 	ENSMUST00000118002.1|4930529M08Rik|ENSMUSG00000037143.11|RIKEN cDNA 4930529M08 gene
mm10_v2_chr11_-_67965631_67965663	3.67818	Rfx3_Rfx1_Rfx4	ENSMUST00000021287.5|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16 	ENSMUST00000126766.1|Wdr16|ENSMUSG00000020904.5|WD repeat domain 16
mm10_v2_chr18_-_43687695_43687773	3.66721	Rfx3_Rfx1_Rfx4	ENSMUST00000082254.6|Jakmip2|ENSMUSG00000024502.9|janus kinase and microtubule interacting protein 2
mm10_v2_chr7_+_19176416_19176440	3.65829	Rfx3_Rfx1_Rfx4	ENSMUST00000117338.1|Eml2|ENSMUSG00000040811.9|echinoderm microtubule associated protein like 2
mm10_v2_chr2_-_118703963_118703963	3.65228	Rfx3_Rfx1_Rfx4	ENSMUST00000104937.1|Ankrd63|ENSMUSG00000078137.1|ankyrin repeat domain 63
mm10_v2_chr7_+_126950687_126950729	3.64867	Rfx3_Rfx1_Rfx4	ENSMUST00000106333.1|Sez6l2|ENSMUSG00000030683.5|seizure related 6 homolog like 2
mm10_v2_chr15_-_79141197_79141268	3.63191	Rfx3_Rfx1_Rfx4	ENSMUST00000169604.1|1700088E04Rik|ENSMUSG00000033029.6|RIKEN cDNA 1700088E04 gene
mm10_v2_chr16_+_78301458_78301496	3.63066	Rfx3_Rfx1_Rfx4	ENSMUST00000023572.7|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr16_-_93603803_93603815	3.61397	Rfx3_Rfx1_Rfx4	ENSMUST00000023669.5|Setd4|ENSMUSG00000022948.8|SET domain containing 4 	ENSMUST00000113951.2|Setd4|ENSMUSG00000022948.8|SET domain containing 4
mm10_v2_chr17_+_34604262_34604304	3.61367	Rfx3_Rfx1_Rfx4	ENSMUST00000174041.1|Agpat1|ENSMUSG00000034254.11|1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)
mm10_v2_chr11_-_59839828_59839843	3.56839	Rfx3_Rfx1_Rfx4	ENSMUST00000019517.3|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr6_+_34780412_34780467	3.54881	Rfx3_Rfx1_Rfx4	ENSMUST00000115016.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115017.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr11_+_83302641_83302803	3.5123	Rfx3_Rfx1_Rfx4	ENSMUST00000176430.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit 	ENSMUST00000065692.7|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr17_-_24650270_24650311	3.48977	Rfx3_Rfx1_Rfx4	ENSMUST00000002572.4|Slc9a3r2|ENSMUSG00000002504.8|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2
mm10_v2_chr5_+_33983534_33983548	3.47503	Rfx3_Rfx1_Rfx4	ENSMUST00000114382.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr4_+_117550326_117550409	3.47489	Rfx3_Rfx1_Rfx4	ENSMUST00000037127.8|Eri3|ENSMUSG00000033423.10|exoribonuclease 3
mm10_v2_chr7_-_13054665_13054764	3.46709	Rfx3_Rfx1_Rfx4	ENSMUST00000182515.1|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1 	ENSMUST00000069289.8|Mzf1|ENSMUSG00000030380.10|myeloid zinc finger 1
mm10_v2_chr3_-_146770603_146770781	3.46486	Rfx3_Rfx1_Rfx4	ENSMUST00000106138.1|Prkacb|ENSMUSG00000005034.9|protein kinase, cAMP dependent, catalytic, beta
mm10_v2_chr14_-_78536762_78536851	3.43985	Rfx3_Rfx1_Rfx4	ENSMUST00000123853.1|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr9_+_20652107_20652138	3.38933	Rfx3_Rfx1_Rfx4	ENSMUST00000034689.6|Pin1|ENSMUSG00000032171.6|protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
mm10_v2_chr1_+_165461037_165461037	3.339	Rfx3_Rfx1_Rfx4	ENSMUST00000027853.5|Mpc2|ENSMUSG00000026568.5|mitochondrial pyruvate carrier 2
mm10_v2_chr11_-_59839745_59839763	3.30007	Rfx3_Rfx1_Rfx4	ENSMUST00000141415.1|Cops3|ENSMUSG00000019373.5|COP9 (constitutive photomorphogenic) homolog, subunit 3 (Arabidopsis thaliana)
mm10_v2_chr5_-_114813943_114813976	3.28708	Rfx3_Rfx1_Rfx4	ENSMUST00000061251.5|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene 	ENSMUST00000112160.3|1500011B03Rik|ENSMUSG00000072694.7|RIKEN cDNA 1500011B03 gene
mm10_v2_chr12_-_72070991_72071079	3.27742	Rfx3_Rfx1_Rfx4	ENSMUST00000050649.4|Gpr135|ENSMUSG00000043398.4|G protein-coupled receptor 135
mm10_v2_chr19_-_4283033_4283142	3.22096	Rfx3_Rfx1_Rfx4	ENSMUST00000167215.1|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D 	ENSMUST00000056888.6|Ankrd13d|ENSMUSG00000005986.9|ankyrin repeat domain 13 family, member D
mm10_v2_chr5_+_33983437_33983529	3.19438	Rfx3_Rfx1_Rfx4	ENSMUST00000114384.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000094869.5|Gm1673|ENSMUSG00000070858.5|predicted gene 1673 	ENSMUST00000114383.1|Gm1673|ENSMUSG00000070858.5|predicted gene 1673
mm10_v2_chr8_+_123235086_123235096	3.19102	Rfx3_Rfx1_Rfx4	ENSMUST00000181432.1|4933417D19Rik|ENSMUSG00000097637.1|RIKEN cDNA 4933417D19 gene
mm10_v2_chr14_-_31001588_31001672	3.17835	Rfx3_Rfx1_Rfx4	ENSMUST00000162092.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000160342.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr2_-_164857542_164857652	3.17738	Rfx3_Rfx1_Rfx4	ENSMUST00000109316.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000156255.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000128110.1|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein 	ENSMUST00000109317.3|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr2_-_25580099_25580099	3.16978	Rfx3_Rfx1_Rfx4	ENSMUST00000114217.1|Gm996|ENSMUSG00000029419.7|predicted gene 996
mm10_v2_chr9_-_70141484_70141578	3.15123	Rfx3_Rfx1_Rfx4	ENSMUST00000034749.8|Fam81a|ENSMUSG00000032224.8|family with sequence similarity 81, member A
mm10_v2_chr7_+_16738410_16738476	3.14878	Rfx3_Rfx1_Rfx4	ENSMUST00000086112.6|Ap2s1|ENSMUSG00000008036.10|adaptor-related protein complex 2, sigma 1 subunit
mm10_v2_chr16_+_78301673_78301760	3.1452	Rfx3_Rfx1_Rfx4	ENSMUST00000114229.2|Cxadr|ENSMUSG00000022865.7|coxsackie virus and adenovirus receptor
mm10_v2_chr5_-_124187150_124187225	3.12045	Rfx3_Rfx1_Rfx4	ENSMUST00000161938.1|Pitpnm2|ENSMUSG00000029406.9|phosphatidylinositol transfer protein, membrane-associated 2
mm10_v2_chr2_+_125136692_125136769	3.09765	Rfx3_Rfx1_Rfx4	ENSMUST00000099452.2|Ctxn2|ENSMUSG00000074872.2|cortexin 2
mm10_v2_chr17_+_12119274_12119348	3.09317	Rfx3_Rfx1_Rfx4	ENSMUST00000024594.2|Agpat4|ENSMUSG00000023827.2|1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
mm10_v2_chr15_-_71727815_71727848	3.08989	Rfx3_Rfx1_Rfx4	ENSMUST00000022953.8|Fam135b|ENSMUSG00000036800.7|family with sequence similarity 135, member B
mm10_v2_chr1_+_172521044_172521181	3.05834	Rfx3_Rfx1_Rfx4	ENSMUST00000085894.5|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000161140.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19 	ENSMUST00000162988.1|Ccdc19|ENSMUSG00000026546.10|coiled-coil domain containing 19
mm10_v2_chr3_+_65109343_65109420	3.04792	Rfx3_Rfx1_Rfx4	ENSMUST00000159525.1|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1 	ENSMUST00000049230.8|Kcnab1|ENSMUSG00000027827.10|potassium voltage-gated channel, shaker-related subfamily, beta member 1
mm10_v2_chr1_+_37299882_37299937	3.03645	Rfx3_Rfx1_Rfx4	ENSMUST00000136846.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000027287.4|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I 	ENSMUST00000132401.1|Inpp4a|ENSMUSG00000026113.11|inositol polyphosphate-4-phosphatase, type I
mm10_v2_chr1_-_155417283_155417323	3.01048	Rfx3_Rfx1_Rfx4	ENSMUST00000027741.5|Xpr1|ENSMUSG00000026469.8|xenotropic and polytropic retrovirus receptor 1
mm10_v2_chr12_+_110889231_110889305	3.0089	Rfx3_Rfx1_Rfx4	ENSMUST00000169597.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2 	ENSMUST00000165978.1|Tecpr2|ENSMUSG00000021275.9|tectonin beta-propeller repeat containing 2
mm10_v2_chr1_-_172329261_172329307	2.96752	Rfx3_Rfx1_Rfx4	ENSMUST00000062387.2|Kcnj9|ENSMUSG00000038026.7|potassium inwardly-rectifying channel, subfamily J, member 9
mm10_v2_chr8_-_27202542_27202557	2.95868	Rfx3_Rfx1_Rfx4	ENSMUST00000038174.6|Got1l1|ENSMUSG00000039720.6|glutamic-oxaloacetic transaminase 1-like 1
mm10_v2_chr5_+_123252087_123252136	2.95315	Rfx3_Rfx1_Rfx4	ENSMUST00000121964.1|Wdr66|ENSMUSG00000029442.12|WD repeat domain 66
mm10_v2_chr15_-_84557776_84557875	2.94849	Rfx3_Rfx1_Rfx4	ENSMUST00000069476.4|Ldoc1l|ENSMUSG00000055745.4|leucine zipper, down-regulated in cancer 1-like
mm10_v2_chr8_-_84104773_84104793	2.93946	Rfx3_Rfx1_Rfx4	ENSMUST00000041367.7|Dcaf15|ENSMUSG00000037103.7|DDB1 and CUL4 associated factor 15
mm10_v2_chr8_+_85060055_85060135	2.9299	Rfx3_Rfx1_Rfx4	ENSMUST00000095220.3|Fbxw9|ENSMUSG00000008167.8|F-box and WD-40 domain protein 9
mm10_v2_chr8_+_66386292_66386308	2.91839	Rfx3_Rfx1_Rfx4	ENSMUST00000039540.5|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1 	ENSMUST00000110253.2|March1|ENSMUSG00000036469.10|membrane-associated ring finger (C3HC4) 1
mm10_v2_chr11_+_83302817_83302952	2.88947	Rfx3_Rfx1_Rfx4	ENSMUST00000142680.1|Ap2b1|ENSMUSG00000035152.8|adaptor-related protein complex 2, beta 1 subunit
mm10_v2_chr1_+_152766540_152766551	2.86431	Rfx3_Rfx1_Rfx4	ENSMUST00000077755.5|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5 	ENSMUST00000097536.4|Arpc5|ENSMUSG00000008475.7|actin related protein 2/3 complex, subunit 5
mm10_v2_chr17_-_34972124_34972158	2.84199	Rfx3_Rfx1_Rfx4	ENSMUST00000087328.2|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A 	ENSMUST00000179128.1|Hspa1a|ENSMUSG00000091971.2|heat shock protein 1A
mm10_v2_chr7_-_44929410_44929521	2.82063	Rfx3_Rfx1_Rfx4	ENSMUST00000107857.3|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000085399.6|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000167930.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit 	ENSMUST00000166972.1|Ap2a1|ENSMUSG00000060279.7|adaptor-related protein complex 2, alpha 1 subunit
mm10_v2_chr13_+_43615950_43615991	2.81952	Rfx3_Rfx1_Rfx4	ENSMUST00000161817.1|Rnf182|ENSMUSG00000044164.2|ring finger protein 182
mm10_v2_chr8_-_111933761_111933816	2.80424	Rfx3_Rfx1_Rfx4	ENSMUST00000034429.7|Tmem231|ENSMUSG00000031951.7|transmembrane protein 231
mm10_v2_chr2_-_134644019_134644042	2.76882	Rfx3_Rfx1_Rfx4	ENSMUST00000110120.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr2_+_164823001_164823040	2.74933	Rfx3_Rfx1_Rfx4	ENSMUST00000132282.1|Zswim1|ENSMUSG00000017764.2|zinc finger SWIM-type containing 1
mm10_v2_chrX_+_136590841_136590866	2.74679	Rfx3_Rfx1_Rfx4	ENSMUST00000138047.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3 	ENSMUST00000145648.1|Tceal3|ENSMUSG00000044550.5|transcription elongation factor A (SII)-like 3
mm10_v2_chr14_-_78536854_78536879	2.74401	Rfx3_Rfx1_Rfx4	ENSMUST00000022593.5|Akap11|ENSMUSG00000022016.9|A kinase (PRKA) anchor protein 11
mm10_v2_chr6_+_34780836_34780905	2.73823	Rfx3_Rfx1_Rfx4	ENSMUST00000115012.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115014.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3 	ENSMUST00000115009.1|Agbl3|ENSMUSG00000038836.9|ATP/GTP binding protein-like 3
mm10_v2_chr3_-_89214378_89214430	2.73544	Rfx3_Rfx1_Rfx4	ENSMUST00000073572.4|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr12_+_72441852_72441866	2.7289	Rfx3_Rfx1_Rfx4	ENSMUST00000162159.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr17_-_46144156_46144218	2.72742	Rfx3_Rfx1_Rfx4	ENSMUST00000024762.2|Rsph9|ENSMUSG00000023966.2|radial spoke head 9 homolog (Chlamydomonas)
mm10_v2_chr16_-_3908639_3908689	2.71902	Rfx3_Rfx1_Rfx4	ENSMUST00000115859.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr12_+_73997749_73997817	2.70497	Rfx3_Rfx1_Rfx4	ENSMUST00000110451.2|Syt16|ENSMUSG00000044912.9|synaptotagmin XVI
mm10_v2_chr2_+_164460945_164461018	2.69915	Rfx3_Rfx1_Rfx4	ENSMUST00000072452.4|Sys1|ENSMUSG00000045503.10|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
mm10_v2_chr7_+_139212974_139212993	2.6725	Rfx3_Rfx1_Rfx4	ENSMUST00000016124.8|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chr4_+_109343029_109343081	2.64751	Rfx3_Rfx1_Rfx4	ENSMUST00000030281.5|Eps15|ENSMUSG00000028552.7|epidermal growth factor receptor pathway substrate 15
mm10_v2_chr9_-_64341145_64341257	2.64704	Rfx3_Rfx1_Rfx4	ENSMUST00000120760.1|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like 	ENSMUST00000168844.2|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr18_-_12305638_12305720	2.62057	Rfx3_Rfx1_Rfx4	ENSMUST00000122408.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000118525.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29 	ENSMUST00000142066.1|Ankrd29|ENSMUSG00000057766.7|ankyrin repeat domain 29
mm10_v2_chr17_+_34972687_34972705	2.58797	Rfx3_Rfx1_Rfx4	ENSMUST00000007248.3|Hspa1l|ENSMUSG00000007033.3|heat shock protein 1-like
mm10_v2_chr10_-_39133848_39133912	2.57273	Rfx3_Rfx1_Rfx4	ENSMUST00000134279.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000139743.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000149949.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000124941.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000125042.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B 	ENSMUST00000063204.2|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr7_+_6172482_6172531	2.56913	Rfx3_Rfx1_Rfx4	ENSMUST00000108567.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000054680.5|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444 	ENSMUST00000108566.1|Zfp444|ENSMUSG00000044876.8|zinc finger protein 444
mm10_v2_chr10_-_39133914_39133927	2.56054	Rfx3_Rfx1_Rfx4	ENSMUST00000135785.1|Fam229b|ENSMUSG00000051736.2|family with sequence similarity 229, member B
mm10_v2_chr2_-_121271315_121271322	2.55168	Rfx3_Rfx1_Rfx4	ENSMUST00000131245.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr8_-_123212742_123212779	2.54614	Rfx3_Rfx1_Rfx4	ENSMUST00000000759.8|Chmp1a|ENSMUSG00000000743.8|charged multivesicular body protein 1A
mm10_v2_chr12_+_52699297_52699411	2.52253	Rfx3_Rfx1_Rfx4	ENSMUST00000095737.3|Akap6|ENSMUSG00000061603.7|A kinase (PRKA) anchor protein 6
mm10_v2_chr11_-_72361837_72361899	2.52101	Rfx3_Rfx1_Rfx4	ENSMUST00000108503.2|Tekt1|ENSMUSG00000020799.10|tektin 1
mm10_v2_chr12_+_80518990_80519087	2.51997	Rfx3_Rfx1_Rfx4	ENSMUST00000021558.6|Galnt16|ENSMUSG00000021130.7|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16
mm10_v2_chr2_+_21205719_21205787	2.51853	Rfx3_Rfx1_Rfx4	ENSMUST00000054591.3|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102952.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138965.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000138914.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial) 	ENSMUST00000102951.1|Thnsl1|ENSMUSG00000048550.11|threonine synthase-like 1 (bacterial)
mm10_v2_chr8_-_4259257_4259283	2.50946	Rfx3_Rfx1_Rfx4	ENSMUST00000053252.7|Ctxn1|ENSMUSG00000048644.7|cortexin 1
mm10_v2_chr6_-_77979515_77979622	2.50541	Rfx3_Rfx1_Rfx4	ENSMUST00000159626.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000075340.5|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2 	ENSMUST00000162273.1|Ctnna2|ENSMUSG00000063063.6|catenin (cadherin associated protein), alpha 2
mm10_v2_chr7_-_99141068_99141149	2.48508	Rfx3_Rfx1_Rfx4	ENSMUST00000037968.8|Uvrag|ENSMUSG00000035354.8|UV radiation resistance associated gene
mm10_v2_chr11_-_29247208_29247409	2.46234	Rfx3_Rfx1_Rfx4	ENSMUST00000020754.3|Ccdc104|ENSMUSG00000020462.8|coiled-coil domain containing 104
mm10_v2_chr16_-_43979050_43979093	2.42421	Rfx3_Rfx1_Rfx4	ENSMUST00000165648.1|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23 	ENSMUST00000036321.7|Zdhhc23|ENSMUSG00000036304.7|zinc finger, DHHC domain containing 23
mm10_v2_chr5_-_114823460_114823475	2.38792	Rfx3_Rfx1_Rfx4	ENSMUST00000140374.1|Gm20499|ENSMUSG00000092252.1|predicted gene 20499 	ENSMUST00000100850.4|2610524H06Rik|ENSMUSG00000092486.1|RIKEN cDNA 2610524H06 gene
mm10_v2_chr2_+_36049453_36049507	2.37107	Rfx3_Rfx1_Rfx4	ENSMUST00000028256.4|Morn5|ENSMUSG00000026894.4|MORN repeat containing 5
mm10_v2_chr12_-_32061221_32061301	2.335	Rfx3_Rfx1_Rfx4	ENSMUST00000003079.5|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta 	ENSMUST00000036497.9|Prkar2b|ENSMUSG00000002997.9|protein kinase, cAMP dependent regulatory, type II beta
mm10_v2_chr12_-_110682606_110682623	2.32813	Rfx3_Rfx1_Rfx4	ENSMUST00000070659.5|1700001K19Rik|ENSMUSG00000056508.5|RIKEN cDNA 1700001K19 gene
mm10_v2_chr12_+_72441933_72441970	2.32361	Rfx3_Rfx1_Rfx4	ENSMUST00000161284.1|Lrrc9|ENSMUSG00000021090.9|leucine rich repeat containing 9
mm10_v2_chr9_-_15627897_15627907	2.30035	Rfx3_Rfx1_Rfx4	ENSMUST00000045513.6|Ccdc67|ENSMUSG00000039977.10|coiled-coil domain containing 67
mm10_v2_chr4_-_126753372_126753440	2.26939	Rfx3_Rfx1_Rfx4	ENSMUST00000030637.7|Ncdn|ENSMUSG00000028833.7|neurochondrin 	ENSMUST00000106116.1|Ncdn|ENSMUSG00000028833.7|neurochondrin
mm10_v2_chr17_+_88530113_88530142	2.26135	Rfx3_Rfx1_Rfx4	ENSMUST00000038551.6|Ppp1r21|ENSMUSG00000034709.7|protein phosphatase 1, regulatory subunit 21
mm10_v2_chr10_+_74967164_74967203	2.25897	Rfx3_Rfx1_Rfx4	ENSMUST00000037813.4|Gnaz|ENSMUSG00000040009.5|guanine nucleotide binding protein, alpha z subunit
mm10_v2_chr15_-_98763195_98763220	2.25436	Rfx3_Rfx1_Rfx4	ENSMUST00000053183.9|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chrX_+_48623737_48623790	2.23998	Rfx3_Rfx1_Rfx4	ENSMUST00000114936.1|Slc25a14|ENSMUSG00000031105.10|solute carrier family 25 (mitochondrial carrier, brain), member 14
mm10_v2_chr2_+_152962485_152962510	2.22622	Rfx3_Rfx1_Rfx4	ENSMUST00000099197.2|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9 	ENSMUST00000103155.3|Ttll9|ENSMUSG00000074673.9|tubulin tyrosine ligase-like family, member 9
mm10_v2_chr8_+_95534078_95534123	2.21122	Rfx3_Rfx1_Rfx4	ENSMUST00000041569.3|Ccdc113|ENSMUSG00000036598.3|coiled-coil domain containing 113
mm10_v2_chr2_+_166792525_166792536	2.20376	Rfx3_Rfx1_Rfx4	ENSMUST00000065753.1|Trp53rk|ENSMUSG00000042854.9|transformation related protein 53 regulating kinase
mm10_v2_chr17_-_34603675_34603702	2.19851	Rfx3_Rfx1_Rfx4	ENSMUST00000015622.7|Rnf5|ENSMUSG00000015478.7|ring finger protein 5
mm10_v2_chr8_-_78821136_78821143	2.19848	Rfx3_Rfx1_Rfx4	ENSMUST00000130325.1|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENSMUST00000051867.6|Lsm6|ENSMUSG00000031683.10|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
mm10_v2_chr3_-_89214329_89214372	2.1903	Rfx3_Rfx1_Rfx4	ENSMUST00000118964.2|Mtx1|ENSMUSG00000064068.7|metaxin 1
mm10_v2_chr3_+_124321031_124321113	2.18058	Rfx3_Rfx1_Rfx4	ENSMUST00000058994.4|Tram1l1|ENSMUSG00000044528.4|translocation associated membrane protein 1-like 1
mm10_v2_chr12_-_21417591_21417637	2.17792	Rfx3_Rfx1_Rfx4	ENSMUST00000135088.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr9_+_108569885_108569943	2.17634	Rfx3_Rfx1_Rfx4	ENSMUST00000019183.8|Dalrd3|ENSMUSG00000019039.8|DALR anticodon binding domain containing 3
mm10_v2_chr19_+_6276725_6276792	2.16547	Rfx3_Rfx1_Rfx4	ENSMUST00000025684.3|Ehd1|ENSMUSG00000024772.9|EH-domain containing 1
mm10_v2_chr8_-_40308331_40308331	2.16427	Rfx3_Rfx1_Rfx4	ENSMUST00000118639.1|Fgf20|ENSMUSG00000031603.8|fibroblast growth factor 20
mm10_v2_chr16_+_17646464_17646507	2.15272	Rfx3_Rfx1_Rfx4	ENSMUST00000056962.4|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr18_+_31609512_31609512	2.15109	Rfx3_Rfx1_Rfx4	ENSMUST00000164667.1|B930094E09Rik|ENSMUSG00000092124.1|RIKEN cDNA B930094E09 gene
mm10_v2_chr2_-_121271341_121271397	2.14337	Rfx3_Rfx1_Rfx4	ENSMUST00000110647.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr6_+_88084473_88084527	2.13841	Rfx3_Rfx1_Rfx4	ENSMUST00000032143.6|Rpn1|ENSMUSG00000030062.6|ribophorin I
mm10_v2_chr17_-_35979679_35979831	2.13467	Rfx3_Rfx1_Rfx4	ENSMUST00000173724.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000172900.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000174849.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr19_+_10001669_10001703	2.12647	Rfx3_Rfx1_Rfx4	ENSMUST00000121418.1|Rab3il1|ENSMUSG00000024663.11|RAB3A interacting protein (rabin3)-like 1
mm10_v2_chr12_-_21417526_21417588	2.1216	Rfx3_Rfx1_Rfx4	ENSMUST00000049531.9|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide 	ENSMUST00000155480.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr2_-_36049365_36049406	2.12128	Rfx3_Rfx1_Rfx4	ENSMUST00000070112.5|Ndufa8|ENSMUSG00000026895.7|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8
mm10_v2_chr10_-_89732253_89732324	2.11827	Rfx3_Rfx1_Rfx4	ENSMUST00000020109.3|Actr6|ENSMUSG00000019948.3|ARP6 actin-related protein 6
mm10_v2_chr7_-_92637079_92637147	2.10229	Rfx3_Rfx1_Rfx4	ENSMUST00000056106.7|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42 	ENSMUST00000118157.1|Ankrd42|ENSMUSG00000041343.12|ankyrin repeat domain 42
mm10_v2_chr15_-_98093245_98093260	2.09747	Rfx3_Rfx1_Rfx4	ENSMUST00000180657.1|Senp1|ENSMUSG00000033075.11|SUMO1/sentrin specific peptidase 1
mm10_v2_chr3_+_108591279_108591414	2.09022	Rfx3_Rfx1_Rfx4	ENSMUST00000051145.8|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47 	ENSMUST00000139626.1|Wdr47|ENSMUSG00000040389.9|WD repeat domain 47
mm10_v2_chr11_+_52004220_52004311	2.08442	Rfx3_Rfx1_Rfx4	ENSMUST00000121591.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063303.4|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109081.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109080.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109079.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109077.2|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000109078.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000063321.6|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000135076.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3 	ENSMUST00000120374.1|Cdkl3|ENSMUSG00000020389.12|cyclin-dependent kinase-like 3
mm10_v2_chr10_-_42018363_42018436	2.07992	Rfx3_Rfx1_Rfx4	ENSMUST00000162405.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000095729.4|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000161081.1|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2 	ENSMUST00000160262.2|Armc2|ENSMUSG00000071324.5|armadillo repeat containing 2
mm10_v2_chr9_+_65460926_65460983	2.073	Rfx3_Rfx1_Rfx4	ENSMUST00000034955.6|Spg21|ENSMUSG00000032388.6|spastic paraplegia 21 homolog (human)
mm10_v2_chr19_-_59943647_59943678	2.07235	Rfx3_Rfx1_Rfx4	ENSMUST00000171986.1|Rab11fip2|ENSMUSG00000040022.8|RAB11 family interacting protein 2 (class I)
mm10_v2_chr4_+_86930691_86930713	2.06042	Rfx3_Rfx1_Rfx4	ENSMUST00000164590.1|Acer2|ENSMUSG00000091609.1|alkaline ceramidase 2
mm10_v2_chr10_-_62578387_62578457	2.05942	Rfx3_Rfx1_Rfx4	ENSMUST00000162525.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000159704.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000162759.1|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene 	ENSMUST00000065887.7|2510003E04Rik|ENSMUSG00000036955.9|RIKEN cDNA 2510003E04 gene
mm10_v2_chr7_-_30232186_30232272	2.05867	Rfx3_Rfx1_Rfx4	ENSMUST00000006254.5|Tbcb|ENSMUSG00000006095.6|tubulin folding cofactor B
mm10_v2_chr16_-_3908596_3908623	2.05217	Rfx3_Rfx1_Rfx4	ENSMUST00000123235.2|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr19_-_4906598_4906632	2.04675	Rfx3_Rfx1_Rfx4	ENSMUST00000053506.6|Bbs1|ENSMUSG00000006464.8|Bardet-Biedl syndrome 1 (human)
mm10_v2_chr10_+_86705811_86705878	2.02781	Rfx3_Rfx1_Rfx4	ENSMUST00000061458.7|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307 	ENSMUST00000075632.6|BC030307|ENSMUSG00000044937.8|cDNA sequence BC030307
mm10_v2_chr15_-_98762992_98763190	2.02293	Rfx3_Rfx1_Rfx4	ENSMUST00000156572.1|Arf3|ENSMUSG00000051853.8|ADP-ribosylation factor 3
mm10_v2_chr4_+_126058557_126058613	2.01586	Rfx3_Rfx1_Rfx4	ENSMUST00000035497.4|Oscp1|ENSMUSG00000042616.7|organic solute carrier partner 1
mm10_v2_chr2_-_5895319_5895432	1.98994	Rfx3_Rfx1_Rfx4	ENSMUST00000026926.4|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae) 	ENSMUST00000102981.3|Sec61a2|ENSMUSG00000025816.9|Sec61, alpha subunit 2 (S. cerevisiae)
mm10_v2_chr7_+_139213239_139213304	1.98784	Rfx3_Rfx1_Rfx4	ENSMUST00000106104.1|Lrrc27|ENSMUSG00000015980.8|leucine rich repeat containing 27
mm10_v2_chrX_+_153359613_153359613	1.98275	Rfx3_Rfx1_Rfx4	ENSMUST00000039545.4|Klf8|ENSMUSG00000041649.7|Kruppel-like factor 8
mm10_v2_chr7_+_16816299_16816361	1.96039	Rfx3_Rfx1_Rfx4	ENSMUST00000108495.2|Strn4|ENSMUSG00000030374.9|striatin, calmodulin binding protein 4
mm10_v2_chr10_+_62980233_62980262	1.96009	Rfx3_Rfx1_Rfx4	ENSMUST00000131718.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000119567.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2 	ENSMUST00000122231.1|Rufy2|ENSMUSG00000020070.12|RUN and FYVE domain-containing 2
mm10_v2_chr6_-_136875794_136875811	1.95166	Rfx3_Rfx1_Rfx4	ENSMUST00000032342.1|Mgp|ENSMUSG00000030218.1|matrix Gla protein
mm10_v2_chr3_+_90079540_90079715	1.9463	Rfx3_Rfx1_Rfx4	ENSMUST00000029549.9|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000118566.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma 	ENSMUST00000119158.1|Tpm3|ENSMUSG00000027940.12|tropomyosin 3, gamma
mm10_v2_chr4_-_117125618_117125683	1.93223	Rfx3_Rfx1_Rfx4	ENSMUST00000183310.1|Btbd19|ENSMUSG00000073771.5|BTB (POZ) domain containing 19
mm10_v2_chr7_-_68749170_68749241	1.91713	Rfx3_Rfx1_Rfx4	ENSMUST00000118110.1|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4 	ENSMUST00000048068.7|Arrdc4|ENSMUSG00000042659.8|arrestin domain containing 4
mm10_v2_chr4_-_152477433_152477549	1.89863	Rfx3_Rfx1_Rfx4	ENSMUST00000159186.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000162017.1|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2 	ENSMUST00000030768.2|Kcnab2|ENSMUSG00000028931.5|potassium voltage-gated channel, shaker-related subfamily, beta member 2
mm10_v2_chr5_+_135632618_135632647	1.89721	Rfx3_Rfx1_Rfx4	ENSMUST00000043707.6|Rhbdd2|ENSMUSG00000039917.6|rhomboid domain containing 2
mm10_v2_chr12_-_84361802_84361838	1.89466	Rfx3_Rfx1_Rfx4	ENSMUST00000021659.1|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B 	ENSMUST00000065536.2|Fam161b|ENSMUSG00000021234.3|family with sequence similarity 161, member B
mm10_v2_chr18_+_35965088_35965110	1.88968	Rfx3_Rfx1_Rfx4	ENSMUST00000175734.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr16_+_32099781_32099857	1.87847	Rfx3_Rfx1_Rfx4	ENSMUST00000115168.2|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr15_+_76671615_76671710	1.86192	Rfx3_Rfx1_Rfx4	ENSMUST00000037551.8|Ppp1r16a|ENSMUSG00000033819.9|protein phosphatase 1, regulatory (inhibitor) subunit 16A
mm10_v2_chr11_-_87359011_87359081	1.84624	Rfx3_Rfx1_Rfx4	ENSMUST00000055438.4|Ppm1e|ENSMUSG00000046442.4|protein phosphatase 1E (PP2C domain containing)
mm10_v2_chr5_-_136986829_136986901	1.84117	Rfx3_Rfx1_Rfx4	ENSMUST00000034953.7|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1 	ENSMUST00000085941.5|Znhit1|ENSMUSG00000059518.8|zinc finger, HIT domain containing 1
mm10_v2_chr15_-_76126538_76126556	1.83523	Rfx3_Rfx1_Rfx4	ENSMUST00000054022.5|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139 	ENSMUST00000089654.3|BC024139|ENSMUSG00000044361.9|cDNA sequence BC024139
mm10_v2_chr9_+_110476985_110476999	1.83421	Rfx3_Rfx1_Rfx4	ENSMUST00000084948.4|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000061155.6|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000140686.1|Kif9|ENSMUSG00000032489.11|kinesin family member 9 	ENSMUST00000084952.5|Kif9|ENSMUSG00000032489.11|kinesin family member 9
mm10_v2_chr2_-_121271403_121271410	1.83067	Rfx3_Rfx1_Rfx4	ENSMUST00000110648.1|Trp53bp1|ENSMUSG00000043909.10|transformation related protein 53 binding protein 1
mm10_v2_chr5_-_115300912_115300944	1.82621	Rfx3_Rfx1_Rfx4	ENSMUST00000112090.1|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr4_+_105790534_105790534	1.81267	Rfx3_Rfx1_Rfx4	ENSMUST00000185012.1|Gm12728|ENSMUSG00000083780.2|predicted gene 12728
mm10_v2_chr8_+_36993551_36993611	1.80909	Rfx3_Rfx1_Rfx4	ENSMUST00000098825.3|AI429214|ENSMUSG00000074384.3|expressed sequence AI429214
mm10_v2_chr5_+_130187158_130187166	1.77848	Rfx3_Rfx1_Rfx4	ENSMUST00000119027.1|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1 	ENSMUST00000026390.7|Rabgef1|ENSMUSG00000025340.8|RAB guanine nucleotide exchange factor (GEF) 1
mm10_v2_chr11_+_109650574_109650579	1.76983	Rfx3_Rfx1_Rfx4	ENSMUST00000106676.1|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr5_-_137530990_137531049	1.76893	Rfx3_Rfx1_Rfx4	ENSMUST00000132525.1|Gnb2|ENSMUSG00000029713.9|guanine nucleotide binding protein (G protein), beta 2
mm10_v2_chr2_-_91444622_91444726	1.74575	Rfx3_Rfx1_Rfx4	ENSMUST00000064652.7|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000102594.4|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene 	ENSMUST00000094835.2|1110051M20Rik|ENSMUSG00000040591.12|RIKEN cDNA 1110051M20 gene
mm10_v2_chr9_-_64341288_64341311	1.74517	Rfx3_Rfx1_Rfx4	ENSMUST00000068367.7|Dis3l|ENSMUSG00000032396.11|DIS3 mitotic control homolog (S. cerevisiae)-like
mm10_v2_chr1_-_59237093_59237256	1.74402	Rfx3_Rfx1_Rfx4	ENSMUST00000163058.1|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile) 	ENSMUST00000027178.6|Als2|ENSMUSG00000026024.8|amyotrophic lateral sclerosis 2 (juvenile)
mm10_v2_chr4_-_149426603_149426749	1.73895	Rfx3_Rfx1_Rfx4	ENSMUST00000103212.3|Ube4b|ENSMUSG00000028960.12|ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)
mm10_v2_chr16_-_91728599_91728637	1.73627	Rfx3_Rfx1_Rfx4	ENSMUST00000122254.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr6_-_102464667_102464667	1.72788	Rfx3_Rfx1_Rfx4	ENSMUST00000032159.6|Cntn3|ENSMUSG00000030075.8|contactin 3
mm10_v2_chr1_-_152766281_152766319	1.72298	Rfx3_Rfx1_Rfx4	ENSMUST00000111859.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1 	ENSMUST00000148865.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr9_-_60687459_60687672	1.71824	Rfx3_Rfx1_Rfx4	ENSMUST00000114032.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000166168.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49 	ENSMUST00000132366.1|Lrrc49|ENSMUSG00000047766.9|leucine rich repeat containing 49
mm10_v2_chr5_+_111581422_111581422	1.70876	Rfx3_Rfx1_Rfx4	ENSMUST00000064930.3|C130026L21Rik|ENSMUSG00000052848.3|RIKEN cDNA C130026L21 gene
mm10_v2_chr8_+_72219726_72219785	1.70848	Rfx3_Rfx1_Rfx4	ENSMUST00000003123.8|Fam32a|ENSMUSG00000003039.8|family with sequence similarity 32, member A
mm10_v2_chr9_+_104569671_104569683	1.70787	Rfx3_Rfx1_Rfx4	ENSMUST00000057742.8|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr9_-_98563580_98563620	1.70521	Rfx3_Rfx1_Rfx4	ENSMUST00000058992.2|4930579K19Rik|ENSMUSG00000051074.2|RIKEN cDNA 4930579K19 gene
mm10_v2_chrX_+_151198078_151198140	1.70348	Rfx3_Rfx1_Rfx4	ENSMUST00000184730.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000184392.1|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3 	ENSMUST00000096285.4|Wnk3|ENSMUSG00000041245.7|WNK lysine deficient protein kinase 3
mm10_v2_chr6_+_83156401_83156451	1.69902	Rfx3_Rfx1_Rfx4	ENSMUST00000032106.4|1700003E16Rik|ENSMUSG00000030030.4|RIKEN cDNA 1700003E16 gene
mm10_v2_chr17_-_35979237_35979526	1.68371	Rfx3_Rfx1_Rfx4	ENSMUST00000165613.2|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3 	ENSMUST00000173872.1|Prr3|ENSMUSG00000038500.9|proline-rich polypeptide 3
mm10_v2_chr16_-_91728701_91728802	1.68151	Rfx3_Rfx1_Rfx4	ENSMUST00000114023.2|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1 	ENSMUST00000117644.1|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr18_+_35965036_35965087	1.67802	Rfx3_Rfx1_Rfx4	ENSMUST00000176873.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2 	ENSMUST00000177432.1|Psd2|ENSMUSG00000024347.10|pleckstrin and Sec7 domain containing 2
mm10_v2_chr10_-_81060134_81060204	1.67617	Rfx3_Rfx1_Rfx4	ENSMUST00000005067.5|Sgta|ENSMUSG00000004937.5|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha
mm10_v2_chr9_+_107547288_107547379	1.66619	Rfx3_Rfx1_Rfx4	ENSMUST00000010188.7|Zmynd10|ENSMUSG00000010044.7|zinc finger, MYND domain containing 10
mm10_v2_chr2_-_73775341_73775378	1.6566	Rfx3_Rfx1_Rfx4	ENSMUST00000112024.3|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000166199.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1 	ENSMUST00000180045.1|Chn1|ENSMUSG00000056486.11|chimerin (chimaerin) 1
mm10_v2_chr9_+_104569754_104569793	1.65628	Rfx3_Rfx1_Rfx4	ENSMUST00000077190.6|Cpne4|ENSMUSG00000032564.9|copine IV
mm10_v2_chr9_-_59353430_59353508	1.64177	Rfx3_Rfx1_Rfx4	ENSMUST00000026265.6|Bbs4|ENSMUSG00000025235.7|Bardet-Biedl syndrome 4 (human)
mm10_v2_chr4_+_41465134_41465159	1.64125	Rfx3_Rfx1_Rfx4	ENSMUST00000030154.6|Nudt2|ENSMUSG00000028443.6|nudix (nucleoside diphosphate linked moiety X)-type motif 2
mm10_v2_chr12_+_113185877_113185937	1.64039	Rfx3_Rfx1_Rfx4	ENSMUST00000058491.6|Tmem121|ENSMUSG00000049036.6|transmembrane protein 121
mm10_v2_chr14_-_31001311_31001389	1.6353	Rfx3_Rfx1_Rfx4	ENSMUST00000161219.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae) 	ENSMUST00000182501.1|Spcs1|ENSMUSG00000021917.8|signal peptidase complex subunit 1 homolog (S. cerevisiae)
mm10_v2_chr5_-_115300957_115300999	1.62754	Rfx3_Rfx1_Rfx4	ENSMUST00000009157.3|Dynll1|ENSMUSG00000009013.4|dynein light chain LC8-type 1
mm10_v2_chr13_-_49320219_49320311	1.62233	Rfx3_Rfx1_Rfx4	ENSMUST00000110086.1|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr3_+_98382438_98382520	1.60632	Rfx3_Rfx1_Rfx4	ENSMUST00000056096.8|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr12_+_69963452_69963474	1.6054	Rfx3_Rfx1_Rfx4	ENSMUST00000110560.1|Gm3086|ENSMUSG00000079076.1|predicted gene 3086
mm10_v2_chr3_+_68468162_68468209	1.60445	Rfx3_Rfx1_Rfx4	ENSMUST00000182532.1|Schip1|ENSMUSG00000027777.9|schwannomin interacting protein 1
mm10_v2_chr5_+_138171997_138172021	1.60337	Rfx3_Rfx1_Rfx4	ENSMUST00000019662.4|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1 	ENSMUST00000151318.1|Ap4m1|ENSMUSG00000019518.4|adaptor-related protein complex AP-4, mu 1
mm10_v2_chr4_-_141790891_141790931	1.60296	Rfx3_Rfx1_Rfx4	ENSMUST00000038014.4|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENSMUST00000153880.1|Dnajc16|ENSMUSG00000040697.4|DnaJ (Hsp40) homolog, subfamily C, member 16
mm10_v2_chr2_-_75938407_75938462	1.59606	Rfx3_Rfx1_Rfx4	ENSMUST00000099996.3|Ttc30b|ENSMUSG00000075273.3|tetratricopeptide repeat domain 30B
mm10_v2_chr3_+_98382538_98382553	1.59238	Rfx3_Rfx1_Rfx4	ENSMUST00000178372.1|Zfp697|ENSMUSG00000050064.8|zinc finger protein 697
mm10_v2_chr1_+_24678536_24678609	1.58877	Rfx3_Rfx1_Rfx4	ENSMUST00000095062.3|Lmbrd1|ENSMUSG00000073725.2|LMBR1 domain containing 1
mm10_v2_chr16_+_32099904_32099973	1.58854	Rfx3_Rfx1_Rfx4	ENSMUST00000042869.6|Cep19|ENSMUSG00000035790.9|centrosomal protein 19
mm10_v2_chr11_+_88047302_88047373	1.58214	Rfx3_Rfx1_Rfx4	ENSMUST00000139129.2|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr13_-_49309217_49309257	1.53506	Rfx3_Rfx1_Rfx4	ENSMUST00000110087.2|Fgd3|ENSMUSG00000037946.5|FYVE, RhoGEF and PH domain containing 3
mm10_v2_chr1_+_64690443_64690467	1.52323	Rfx3_Rfx1_Rfx4	ENSMUST00000114077.1|Ccnyl1|ENSMUSG00000070871.4|cyclin Y-like 1
mm10_v2_chr5_+_30281377_30281447	1.52306	Rfx3_Rfx1_Rfx4	ENSMUST00000101448.3|Drc1|ENSMUSG00000073102.3|dynein regulatory complex subunit 1
mm10_v2_chr15_-_75678732_75678805	1.50627	Rfx3_Rfx1_Rfx4	ENSMUST00000000958.8|Top1mt|ENSMUSG00000000934.8|DNA topoisomerase 1, mitochondrial
mm10_v2_chr10_+_20952547_20952593	1.50345	Rfx3_Rfx1_Rfx4	ENSMUST00000105525.4|Ahi1|ENSMUSG00000019986.10|Abelson helper integration site 1
mm10_v2_chr12_-_83439910_83439934	1.49004	Rfx3_Rfx1_Rfx4	ENSMUST00000177801.1|Dpf3|ENSMUSG00000021221.9|D4, zinc and double PHD fingers, family 3
mm10_v2_chr2_-_164857671_164857711	1.48437	Rfx3_Rfx1_Rfx4	ENSMUST00000059954.7|Pltp|ENSMUSG00000017754.7|phospholipid transfer protein
mm10_v2_chr7_-_140882274_140882330	1.47804	Rfx3_Rfx1_Rfx4	ENSMUST00000026559.7|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr8_-_25597459_25597517	1.46357	Rfx3_Rfx1_Rfx4	ENSMUST00000079160.6|Letm2|ENSMUSG00000037363.8|leucine zipper-EF-hand containing transmembrane protein 2
mm10_v2_chr16_+_17646564_17646620	1.45853	Rfx3_Rfx1_Rfx4	ENSMUST00000182117.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182671.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A 	ENSMUST00000182344.1|Ccdc74a|ENSMUSG00000041617.4|coiled-coil domain containing 74A
mm10_v2_chr4_-_41723129_41723179	1.45625	Rfx3_Rfx1_Rfx4	ENSMUST00000171641.1|Dctn3|ENSMUSG00000028447.5|dynactin 3 	ENSMUST00000030158.4|Dctn3|ENSMUSG00000028447.5|dynactin 3
mm10_v2_chr14_-_56778301_56778352	1.45371	Rfx3_Rfx1_Rfx4	ENSMUST00000022507.5|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1 	ENSMUST00000163924.1|Pspc1|ENSMUSG00000021938.5|paraspeckle protein 1
mm10_v2_chr10_+_122678764_122678811	1.45069	Rfx3_Rfx1_Rfx4	ENSMUST00000161487.1|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing) 	ENSMUST00000067918.5|Ppm1h|ENSMUSG00000034613.6|protein phosphatase 1H (PP2C domain containing)
mm10_v2_chr19_+_10577439_10577461	1.44769	Rfx3_Rfx1_Rfx4	ENSMUST00000168445.1|Cyb561a3|ENSMUSG00000034445.7|cytochrome b561 family, member A3
mm10_v2_chr10_-_79874233_79874439	1.44296	Rfx3_Rfx1_Rfx4	ENSMUST00000166023.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000167707.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764 	ENSMUST00000165601.1|BC005764|ENSMUSG00000035835.8|cDNA sequence BC005764
mm10_v2_chrX_+_72918557_72918612	1.42125	Rfx3_Rfx1_Rfx4	ENSMUST00000033715.4|Nsdhl|ENSMUSG00000031349.4|NAD(P) dependent steroid dehydrogenase-like
mm10_v2_chr1_-_75180349_75180407	1.41013	Rfx3_Rfx1_Rfx4	ENSMUST00000027396.8|Abcb6|ENSMUSG00000026198.9|ATP-binding cassette, sub-family B (MDR/TAP), member 6
mm10_v2_chr19_-_6942406_6942450	1.40036	Rfx3_Rfx1_Rfx4	ENSMUST00000099782.3|Gpr137|ENSMUSG00000024958.6|G protein-coupled receptor 137
mm10_v2_chr1_+_93685574_93685694	1.39799	Rfx3_Rfx1_Rfx4	ENSMUST00000027499.6|Bok|ENSMUSG00000026278.8|BCL2-related ovarian killer protein
mm10_v2_chr12_-_21417356_21417436	1.39795	Rfx3_Rfx1_Rfx4	ENSMUST00000103002.1|Ywhaq|ENSMUSG00000076432.6|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide
mm10_v2_chr15_+_59315030_59315087	1.39325	Rfx3_Rfx1_Rfx4	ENSMUST00000022977.7|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr11_+_75999912_75999946	1.38658	Rfx3_Rfx1_Rfx4	ENSMUST00000066408.5|1700016K19Rik|ENSMUSG00000053783.5|RIKEN cDNA 1700016K19 gene
mm10_v2_chr2_+_90904740_90904778	1.37813	Rfx3_Rfx1_Rfx4	ENSMUST00000111464.1|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4 	ENSMUST00000090682.3|Kbtbd4|ENSMUSG00000005505.6|kelch repeat and BTB (POZ) domain containing 4
mm10_v2_chr15_+_59315088_59315128	1.36105	Rfx3_Rfx1_Rfx4	ENSMUST00000100640.4|Sqle|ENSMUSG00000022351.8|squalene epoxidase
mm10_v2_chr17_-_34118476_34118522	1.35982	Rfx3_Rfx1_Rfx4	ENSMUST00000095347.5|Brd2|ENSMUSG00000024335.13|bromodomain containing 2
mm10_v2_chr12_+_84409039_84409102	1.34737	Rfx3_Rfx1_Rfx4	ENSMUST00000081828.6|Ccdc176|ENSMUSG00000057265.6|coiled-coil domain containing 176
mm10_v2_chr16_-_3907651_3907707	1.34114	Rfx3_Rfx1_Rfx4	ENSMUST00000177221.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene 	ENSMUST00000177323.1|1700037C18Rik|ENSMUSG00000005983.9|RIKEN cDNA 1700037C18 gene
mm10_v2_chr9_-_122950922_122950953	1.33347	Rfx3_Rfx1_Rfx4	ENSMUST00000118422.1|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr4_-_117872520_117872560	1.32816	Rfx3_Rfx1_Rfx4	ENSMUST00000171052.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000166325.1|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24 	ENSMUST00000106422.2|Ccdc24|ENSMUSG00000078588.4|coiled-coil domain containing 24
mm10_v2_chr14_+_32085804_32085877	1.32454	Rfx3_Rfx1_Rfx4	ENSMUST00000170600.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000168986.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1 	ENSMUST00000169649.1|Oxnad1|ENSMUSG00000021906.7|oxidoreductase NAD-binding domain containing 1
mm10_v2_chr1_-_133801031_133801041	1.32028	Rfx3_Rfx1_Rfx4	ENSMUST00000143567.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr2_+_69647208_69647272	1.3194	Rfx3_Rfx1_Rfx4	ENSMUST00000074963.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human) 	ENSMUST00000112286.2|Bbs5|ENSMUSG00000063145.4|Bardet-Biedl syndrome 5 (human)
mm10_v2_chr9_-_122950960_122951006	1.31839	Rfx3_Rfx1_Rfx4	ENSMUST00000035154.3|1110059G10Rik|ENSMUSG00000032551.6|RIKEN cDNA 1110059G10 gene
mm10_v2_chr4_-_40722307_40722398	1.31285	Rfx3_Rfx1_Rfx4	ENSMUST00000181475.1|Gm6297|ENSMUSG00000097123.1|predicted gene 6297
mm10_v2_chr11_+_109650921_109651003	1.30028	Rfx3_Rfx1_Rfx4	ENSMUST00000049527.6|Prkar1a|ENSMUSG00000020612.10|protein kinase, cAMP dependent regulatory, type I, alpha
mm10_v2_chr6_+_55203381_55203459	1.2973	Rfx3_Rfx1_Rfx4	ENSMUST00000053094.7|Fam188b|ENSMUSG00000038022.9|family with sequence similarity 188, member B
mm10_v2_chr19_-_10556198_10556275	1.29223	Rfx3_Rfx1_Rfx4	ENSMUST00000025569.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr15_+_30172570_30172600	1.29034	Rfx3_Rfx1_Rfx4	ENSMUST00000081728.5|Ctnnd2|ENSMUSG00000022240.9|catenin (cadherin associated protein), delta 2
mm10_v2_chr7_-_44375006_44375035	1.279	Rfx3_Rfx1_Rfx4	ENSMUST00000107933.1|1700008O03Rik|ENSMUSG00000008028.9|RIKEN cDNA 1700008O03 gene
mm10_v2_chrX_-_136741155_136741352	1.27095	Rfx3_Rfx1_Rfx4	ENSMUST00000166930.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000113095.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000155207.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000080411.6|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2 	ENSMUST00000169418.1|Morf4l2|ENSMUSG00000031422.10|mortality factor 4 like 2
mm10_v2_chr3_+_67374116_67374154	1.26754	Rfx3_Rfx1_Rfx4	ENSMUST00000061322.8|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr14_-_60197173_60197185	1.26585	Rfx3_Rfx1_Rfx4	ENSMUST00000131670.1|Atp8a2|ENSMUSG00000021983.9|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2
mm10_v2_chr16_-_91728975_91729092	1.2649	Rfx3_Rfx1_Rfx4	ENSMUST00000073466.6|Cryzl1|ENSMUSG00000058240.7|crystallin, zeta (quinone reductase)-like 1
mm10_v2_chr11_+_97801917_97801998	1.259	Rfx3_Rfx1_Rfx4	ENSMUST00000127033.2|Lasp1|ENSMUSG00000038366.9|LIM and SH3 protein 1
mm10_v2_chr11_+_114668524_114668626	1.2513	Rfx3_Rfx1_Rfx4	ENSMUST00000106602.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000077915.3|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000106599.1|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38 	ENSMUST00000082092.4|Rpl38|ENSMUSG00000057322.6|ribosomal protein L38
mm10_v2_chr2_-_5063996_5064048	1.24427	Rfx3_Rfx1_Rfx4	ENSMUST00000114996.1|Optn|ENSMUSG00000026672.5|optineurin
mm10_v2_chr1_-_86359455_86359486	1.22802	Rfx3_Rfx1_Rfx4	ENSMUST00000027438.6|Ncl|ENSMUSG00000026234.6|nucleolin
mm10_v2_chr11_+_70030023_70030083	1.2247	Rfx3_Rfx1_Rfx4	ENSMUST00000143920.2|Dlg4|ENSMUSG00000020886.10|discs, large homolog 4 (Drosophila)
mm10_v2_chr7_+_122067164_122067216	1.22209	Rfx3_Rfx1_Rfx4	ENSMUST00000033158.4|Ubfd1|ENSMUSG00000030870.6|ubiquitin family domain containing 1
mm10_v2_chr17_-_57011271_57011326	1.21655	Rfx3_Rfx1_Rfx4	ENSMUST00000002733.6|Gtf2f1|ENSMUSG00000002658.9|general transcription factor IIF, polypeptide 1
mm10_v2_chr15_+_78428564_78428636	1.21465	Rfx3_Rfx1_Rfx4	ENSMUST00000166142.2|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000162517.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17 	ENSMUST00000089414.4|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr6_-_91473361_91473470	1.2126	Rfx3_Rfx1_Rfx4	ENSMUST00000040835.7|Chchd4|ENSMUSG00000034203.7|coiled-coil-helix-coiled-coil-helix domain containing 4
mm10_v2_chr18_+_36348739_36348779	1.20915	Rfx3_Rfx1_Rfx4	ENSMUST00000152804.2|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr9_+_44398176_44398176	1.20721	Rfx3_Rfx1_Rfx4	ENSMUST00000165839.1|Slc37a4|ENSMUSG00000032114.8|solute carrier family 37 (glucose-6-phosphate transporter), member 4
mm10_v2_chr11_+_72689997_72690015	1.20678	Rfx3_Rfx1_Rfx4	ENSMUST00000155998.1|Ankfy1|ENSMUSG00000020790.8|ankyrin repeat and FYVE domain containing 1
mm10_v2_chr12_-_110889119_110889145	1.20656	Rfx3_Rfx1_Rfx4	ENSMUST00000043716.8|Cinp|ENSMUSG00000021276.9|cyclin-dependent kinase 2 interacting protein
mm10_v2_chr12_-_55821157_55821195	1.20138	Rfx3_Rfx1_Rfx4	ENSMUST00000110687.1|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1 	ENSMUST00000085385.5|Ralgapa1|ENSMUSG00000021027.9|Ral GTPase activating protein, alpha subunit 1
mm10_v2_chr2_-_90904827_90904940	1.1842	Rfx3_Rfx1_Rfx4	ENSMUST00000005647.3|Ndufs3|ENSMUSG00000005510.3|NADH dehydrogenase (ubiquinone) Fe-S protein 3
mm10_v2_chr18_+_53245618_53245662	1.18187	Rfx3_Rfx1_Rfx4	ENSMUST00000165032.1|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr8_+_122611618_122611663	1.17928	Rfx3_Rfx1_Rfx4	ENSMUST00000015157.8|Trappc2l|ENSMUSG00000015013.8|trafficking protein particle complex 2-like
mm10_v2_chr2_+_167932327_167932379	1.17755	Rfx3_Rfx1_Rfx4	ENSMUST00000029053.7|Ptpn1|ENSMUSG00000027540.7|protein tyrosine phosphatase, non-receptor type 1
mm10_v2_chr18_+_36348653_36348728	1.17039	Rfx3_Rfx1_Rfx4	ENSMUST00000050584.3|Cystm1|ENSMUSG00000046727.6|cysteine-rich transmembrane module containing 1
mm10_v2_chr2_-_134644079_134644109	1.16326	Rfx3_Rfx1_Rfx4	ENSMUST00000110119.1|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr18_+_63708689_63708730	1.16212	Rfx3_Rfx1_Rfx4	ENSMUST00000072726.5|Wdr7|ENSMUSG00000040560.9|WD repeat domain 7
mm10_v2_chr11_-_103267405_103267472	1.16078	Rfx3_Rfx1_Rfx4	ENSMUST00000021324.2|Map3k14|ENSMUSG00000020941.7|mitogen-activated protein kinase kinase kinase 14
mm10_v2_chr4_-_121017201_121017261	1.15858	Rfx3_Rfx1_Rfx4	ENSMUST00000043200.7|Smap2|ENSMUSG00000032870.8|small ArfGAP 2
mm10_v2_chr9_-_109059711_109059771	1.15472	Rfx3_Rfx1_Rfx4	ENSMUST00000061973.4|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr12_-_110840905_110840950	1.13995	Rfx3_Rfx1_Rfx4	ENSMUST00000177224.1|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000084974.4|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30 	ENSMUST00000070565.8|Stk30|ENSMUSG00000056458.10|serine/threonine kinase 30
mm10_v2_chr1_+_59119822_59119861	1.13303	Rfx3_Rfx1_Rfx4	ENSMUST00000180570.1|G730003C15Rik|ENSMUSG00000097573.1|RIKEN cDNA G730003C15 gene
mm10_v2_chr9_-_14771004_14771044	1.12493	Rfx3_Rfx1_Rfx4	ENSMUST00000060330.3|1700012B09Rik|ENSMUSG00000031927.3|RIKEN cDNA 1700012B09 gene
mm10_v2_chr7_-_140881811_140881869	1.12184	Rfx3_Rfx1_Rfx4	ENSMUST00000106048.3|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000147331.2|Sirt3|ENSMUSG00000025486.10|sirtuin 3 	ENSMUST00000137710.1|Sirt3|ENSMUSG00000025486.10|sirtuin 3
mm10_v2_chr16_+_20696175_20696211	1.12133	Rfx3_Rfx1_Rfx4	ENSMUST00000128273.1|Fam131a|ENSMUSG00000050821.7|family with sequence similarity 131, member A
mm10_v2_chr15_-_84065329_84065364	1.11455	Rfx3_Rfx1_Rfx4	ENSMUST00000156187.1|Efcab6|ENSMUSG00000022441.11|EF-hand calcium binding domain 6
mm10_v2_chr11_-_101278927_101279114	1.10388	Rfx3_Rfx1_Rfx4	ENSMUST00000168089.1|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3 	ENSMUST00000017332.3|Coa3|ENSMUSG00000017188.3|cytochrome C oxidase assembly factor 3
mm10_v2_chr2_-_52742169_52742281	1.09107	Rfx3_Rfx1_Rfx4	ENSMUST00000102759.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 	ENSMUST00000127316.1|Stam2|ENSMUSG00000055371.11|signal transducing adaptor molecule (SH3 domain and ITAM motif) 2
mm10_v2_chr19_+_8840519_8840549	1.08539	Rfx3_Rfx1_Rfx4	ENSMUST00000086058.6|Bscl2|ENSMUSG00000071657.6|Bernardinelli-Seip congenital lipodystrophy 2 homolog (human)
mm10_v2_chrX_-_140062550_140062583	1.08381	Rfx3_Rfx1_Rfx4	ENSMUST00000124075.1|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000101212.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like 	ENSMUST00000125678.2|Nup62cl|ENSMUSG00000072944.5|nucleoporin 62 C-terminal like
mm10_v2_chr2_-_75981967_75981967	1.08131	Rfx3_Rfx1_Rfx4	ENSMUST00000099994.3|Ttc30a1|ENSMUSG00000075271.3|tetratricopeptide repeat domain 30A1
mm10_v2_chr4_+_40722912_40723001	1.07154	Rfx3_Rfx1_Rfx4	ENSMUST00000164233.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000137246.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1 	ENSMUST00000125442.1|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr18_+_53245736_53245786	1.0662	Rfx3_Rfx1_Rfx4	ENSMUST00000025417.8|Snx24|ENSMUSG00000024535.9|sorting nexing 24
mm10_v2_chr4_+_40722461_40722512	1.05006	Rfx3_Rfx1_Rfx4	ENSMUST00000030118.3|Dnaja1|ENSMUSG00000028410.7|DnaJ (Hsp40) homolog, subfamily A, member 1
mm10_v2_chr7_+_30231884_30231948	1.03824	Rfx3_Rfx1_Rfx4	ENSMUST00000019882.9|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr11_-_77725281_77725294	1.03243	Rfx3_Rfx1_Rfx4	ENSMUST00000078623.4|Cryba1|ENSMUSG00000000724.10|crystallin, beta A1
mm10_v2_chr5_-_107987003_107987085	1.02347	Rfx3_Rfx1_Rfx4	ENSMUST00000145239.1|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A 	ENSMUST00000031198.4|Fam69a|ENSMUSG00000029270.4|family with sequence similarity 69, member A
mm10_v2_chr8_+_95055094_95055126	1.02294	Rfx3_Rfx1_Rfx4	ENSMUST00000058479.6|Ccdc135|ENSMUSG00000031786.6|coiled-coil domain containing 135
mm10_v2_chr4_-_155669171_155669231	1.01336	Rfx3_Rfx1_Rfx4	ENSMUST00000103176.3|Mib2|ENSMUSG00000029060.11|mindbomb homolog 2 (Drosophila)
mm10_v2_chr7_-_118855602_118855695	1.01173	Rfx3_Rfx1_Rfx4	ENSMUST00000106549.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000126792.1|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr17_+_85090647_85090726	1.00535	Rfx3_Rfx1_Rfx4	ENSMUST00000095188.5|Camkmt|ENSMUSG00000071037.5|calmodulin-lysine N-methyltransferase
mm10_v2_chr7_+_67222544_67222635	1.00414	Rfx3_Rfx1_Rfx4	ENSMUST00000058771.5|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4 	ENSMUST00000179106.1|Lysmd4|ENSMUSG00000043831.5|LysM, putative peptidoglycan-binding, domain containing 4
mm10_v2_chr11_+_3895223_3895310	0.99659	Rfx3_Rfx1_Rfx4	ENSMUST00000055931.4|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18 	ENSMUST00000109996.1|Dusp18|ENSMUSG00000047205.6|dual specificity phosphatase 18
mm10_v2_chr15_-_83122756_83122801	0.993199	Rfx3_Rfx1_Rfx4	ENSMUST00000018184.3|Rrp7a|ENSMUSG00000018040.3|ribosomal RNA processing 7 homolog A (S. cerevisiae)
mm10_v2_chr8_-_122611419_122611487	0.976392	Rfx3_Rfx1_Rfx4	ENSMUST00000015171.9|Galns|ENSMUSG00000015027.10|galactosamine (N-acetyl)-6-sulfate sulfatase
mm10_v2_chr12_+_21417872_21417911	0.970117	Rfx3_Rfx1_Rfx4	ENSMUST00000180671.1|Gm4419|ENSMUSG00000097055.1|predicted gene 4419
mm10_v2_chr14_-_54253907_54253920	0.968924	Rfx3_Rfx1_Rfx4	ENSMUST00000128231.1|Dad1|ENSMUSG00000022174.8|defender against cell death 1
mm10_v2_chr1_+_86154752_86154821	0.966998	Rfx3_Rfx1_Rfx4	ENSMUST00000113309.2|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000027434.8|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9 	ENSMUST00000131412.1|Armc9|ENSMUSG00000062590.7|armadillo repeat containing 9
mm10_v2_chr2_+_152427639_152427699	0.958907	Rfx3_Rfx1_Rfx4	ENSMUST00000128737.1|6820408C15Rik|ENSMUSG00000032680.5|RIKEN cDNA 6820408C15 gene
mm10_v2_chr1_+_90603425_90603511	0.952679	Rfx3_Rfx1_Rfx4	ENSMUST00000036153.5|Cops8|ENSMUSG00000034432.5|COP9 (constitutive photomorphogenic) homolog, subunit 8 (Arabidopsis thaliana)
mm10_v2_chr3_-_105960099_105960099	0.944118	Rfx3_Rfx1_Rfx4	ENSMUST00000118209.1|Atp5f1|ENSMUSG00000000563.11|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1
mm10_v2_chr8_-_85299483_85299535	0.943699	Rfx3_Rfx1_Rfx4	ENSMUST00000034131.8|Vps35|ENSMUSG00000031696.8|vacuolar protein sorting 35
mm10_v2_chr11_-_62731865_62731910	0.942542	Rfx3_Rfx1_Rfx4	ENSMUST00000150336.1|Zfp287|ENSMUSG00000005267.7|zinc finger protein 287
mm10_v2_chr4_-_43653560_43653594	0.942199	Rfx3_Rfx1_Rfx4	ENSMUST00000107870.2|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr4_+_123016590_123016613	0.938215	Rfx3_Rfx1_Rfx4	ENSMUST00000102649.3|Trit1|ENSMUSG00000028653.10|tRNA isopentenyltransferase 1
mm10_v2_chr10_-_128645965_128645991	0.935309	Rfx3_Rfx1_Rfx4	ENSMUST00000133342.1|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr2_-_21205342_21205371	0.935253	Rfx3_Rfx1_Rfx4	ENSMUST00000027992.2|Enkur|ENSMUSG00000026679.3|enkurin, TRPC channel interacting protein
mm10_v2_chr4_+_123904907_123904916	0.925526	Rfx3_Rfx1_Rfx4	ENSMUST00000106202.3|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr19_-_42086338_42086375	0.91921	Rfx3_Rfx1_Rfx4	ENSMUST00000051772.8|Morn4|ENSMUSG00000049670.8|MORN repeat containing 4
mm10_v2_chr2_-_163645125_163645136	0.914921	Rfx3_Rfx1_Rfx4	ENSMUST00000017851.3|Serinc3|ENSMUSG00000017707.9|serine incorporator 3
mm10_v2_chr5_-_137046026_137046135	0.914524	Rfx3_Rfx1_Rfx4	ENSMUST00000144303.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1 	ENSMUST00000111080.1|Ap1s1|ENSMUSG00000004849.8|adaptor protein complex AP-1, sigma 1
mm10_v2_chr7_-_6730412_6730431	0.912878	Rfx3_Rfx1_Rfx4	ENSMUST00000051209.4|Peg3|ENSMUSG00000002265.9|paternally expressed 3
mm10_v2_chr6_+_83185946_83186151	0.911959	Rfx3_Rfx1_Rfx4	ENSMUST00000113907.1|Dctn1|ENSMUSG00000031865.9|dynactin 1
mm10_v2_chr10_-_117063764_117063814	0.907602	Rfx3_Rfx1_Rfx4	ENSMUST00000047672.7|Cct2|ENSMUSG00000034024.7|chaperonin containing Tcp1, subunit 2 (beta)
mm10_v2_chr19_-_41896132_41896155	0.893797	Rfx3_Rfx1_Rfx4	ENSMUST00000038677.3|Rrp12|ENSMUSG00000035049.3|ribosomal RNA processing 12 homolog (S. cerevisiae)
mm10_v2_chr5_+_124112297_124112351	0.891404	Rfx3_Rfx1_Rfx4	ENSMUST00000024470.6|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2 	ENSMUST00000119269.1|Ogfod2|ENSMUSG00000023707.7|2-oxoglutarate and iron-dependent oxygenase domain containing 2
mm10_v2_chr16_-_4523056_4523075	0.884891	Rfx3_Rfx1_Rfx4	ENSMUST00000090500.3|Srl|ENSMUSG00000022519.7|sarcalumenin 	ENSMUST00000023161.7|Srl|ENSMUSG00000022519.7|sarcalumenin
mm10_v2_chr6_+_113392417_113392497	0.875551	Rfx3_Rfx1_Rfx4	ENSMUST00000032414.4|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3 	ENSMUST00000038889.5|Ttll3|ENSMUSG00000030276.13|tubulin tyrosine ligase-like family, member 3
mm10_v2_chr8_-_34965631_34965714	0.87292	Rfx3_Rfx1_Rfx4	ENSMUST00000033929.4|Tnks|ENSMUSG00000031529.4|tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase
mm10_v2_chrX_-_122397351_122397425	0.872566	Rfx3_Rfx1_Rfx4	ENSMUST00000079490.4|Nap1l3|ENSMUSG00000055733.5|nucleosome assembly protein 1-like 3
mm10_v2_chr10_-_75764265_75764359	0.870745	Rfx3_Rfx1_Rfx4	ENSMUST00000001712.6|Cabin1|ENSMUSG00000020196.9|calcineurin binding protein 1
mm10_v2_chr10_+_81606883_81607025	0.869858	Rfx3_Rfx1_Rfx4	ENSMUST00000119753.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000121138.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920 	ENSMUST00000099442.3|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr1_+_179668202_179668268	0.867818	Rfx3_Rfx1_Rfx4	ENSMUST00000040538.3|Sccpdh|ENSMUSG00000038936.7|saccharopine dehydrogenase (putative)
mm10_v2_chr1_-_172258410_172258438	0.863407	Rfx3_Rfx1_Rfx4	ENSMUST00000111243.1|Atp1a4|ENSMUSG00000007107.5|ATPase, Na+/K+ transporting, alpha 4 polypeptide
mm10_v2_chr10_-_128645784_128645826	0.86322	Rfx3_Rfx1_Rfx4	ENSMUST00000065334.3|Ikzf4|ENSMUSG00000002578.9|IKAROS family zinc finger 4
mm10_v2_chr9_-_50739365_50739517	0.860353	Rfx3_Rfx1_Rfx4	ENSMUST00000117093.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1 	ENSMUST00000121634.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr7_-_43313233_43313285	0.853256	Rfx3_Rfx1_Rfx4	ENSMUST00000012796.7|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715 	ENSMUST00000107986.2|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715
mm10_v2_chr3_+_67374091_67374102	0.85206	Rfx3_Rfx1_Rfx4	ENSMUST00000077916.5|Mlf1|ENSMUSG00000048416.9|myeloid leukemia factor 1
mm10_v2_chr13_-_108158584_108158630	0.851477	Rfx3_Rfx1_Rfx4	ENSMUST00000163558.1|Ndufaf2|ENSMUSG00000068184.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2
mm10_v2_chr4_+_134102581_134102618	0.850068	Rfx3_Rfx1_Rfx4	ENSMUST00000074690.4|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000070246.2|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11 	ENSMUST00000156750.1|Ubxn11|ENSMUSG00000012126.10|UBX domain protein 11
mm10_v2_chr19_+_6942501_6942584	0.849578	Rfx3_Rfx1_Rfx4	ENSMUST00000113423.3|Bad|ENSMUSG00000024959.7|BCL2-associated agonist of cell death
mm10_v2_chr18_-_70530313_70530434	0.849173	Rfx3_Rfx1_Rfx4	ENSMUST00000043286.8|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr4_+_123904832_123904851	0.845638	Rfx3_Rfx1_Rfx4	ENSMUST00000030400.7|Mycbp|ENSMUSG00000028647.7|c-myc binding protein
mm10_v2_chr17_-_34836869_34836959	0.842756	Rfx3_Rfx1_Rfx4	ENSMUST00000077477.5|Stk19|ENSMUSG00000061207.5|serine/threonine kinase 19
mm10_v2_chr18_-_70530138_70530284	0.839888	Rfx3_Rfx1_Rfx4	ENSMUST00000161542.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota 	ENSMUST00000159389.1|Poli|ENSMUSG00000038425.11|polymerase (DNA directed), iota
mm10_v2_chr16_+_35770382_35770396	0.836854	Rfx3_Rfx1_Rfx4	ENSMUST00000023555.4|Hspbap1|ENSMUSG00000022849.4|Hspb associated protein 1
mm10_v2_chr17_+_33955902_33955926	0.835678	Rfx3_Rfx1_Rfx4	ENSMUST00000173196.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chr1_-_124045247_124045267	0.833392	Rfx3_Rfx1_Rfx4	ENSMUST00000112603.2|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr4_-_43653542_43653557	0.819193	Rfx3_Rfx1_Rfx4	ENSMUST00000084646.4|Spag8|ENSMUSG00000066196.5|sperm associated antigen 8
mm10_v2_chr3_-_20035285_20035325	0.818684	Rfx3_Rfx1_Rfx4	ENSMUST00000108321.1|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human) 	ENSMUST00000012580.6|Hps3|ENSMUSG00000027615.8|Hermansky-Pudlak syndrome 3 homolog (human)
mm10_v2_chr19_+_43689672_43689695	0.81402	Rfx3_Rfx1_Rfx4	ENSMUST00000081079.5|Entpd7|ENSMUSG00000025192.7|ectonucleoside triphosphate diphosphohydrolase 7
mm10_v2_chr11_-_120467414_120467600	0.807183	Rfx3_Rfx1_Rfx4	ENSMUST00000076921.6|Arl16|ENSMUSG00000057594.6|ADP-ribosylation factor-like 16
mm10_v2_chr19_-_23652780_23652820	0.805918	Rfx3_Rfx1_Rfx4	ENSMUST00000035849.3|1700028P14Rik|ENSMUSG00000033053.3|RIKEN cDNA 1700028P14 gene
mm10_v2_chr5_+_136908130_136908174	0.799883	Rfx3_Rfx1_Rfx4	ENSMUST00000008131.8|Rabl5|ENSMUSG00000007987.8|RAB, member of RAS oncogene family-like 5
mm10_v2_chr8_+_123332676_123332740	0.785858	Rfx3_Rfx1_Rfx4	ENSMUST00000010298.6|Spire2|ENSMUSG00000010154.6|spire homolog 2 (Drosophila)
mm10_v2_chr2_+_126152141_126152212	0.784295	Rfx3_Rfx1_Rfx4	ENSMUST00000170908.1|Dtwd1|ENSMUSG00000023330.6|DTW domain containing 1
mm10_v2_chr13_+_108158723_108158754	0.773564	Rfx3_Rfx1_Rfx4	ENSMUST00000054835.8|Ercc8|ENSMUSG00000021694.12|excision repaiross-complementing rodent repair deficiency, complementation group 8 	ENSMUST00000120672.1|Ercc8|ENSMUSG00000021694.12|excision repaiross-complementing rodent repair deficiency, complementation group 8
mm10_v2_chr7_+_101321079_101321134	0.768596	Rfx3_Rfx1_Rfx4	ENSMUST00000032927.7|Stard10|ENSMUSG00000030688.8|START domain containing 10
mm10_v2_chr15_+_81663889_81663958	0.760315	Rfx3_Rfx1_Rfx4	ENSMUST00000023029.8|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000174229.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila) 	ENSMUST00000172748.1|L3mbtl2|ENSMUSG00000022394.8|l(3)mbt-like 2 (Drosophila)
mm10_v2_chr3_-_57847478_57847610	0.759367	Rfx3_Rfx1_Rfx4	ENSMUST00000120289.1|Pfn2|ENSMUSG00000027805.10|profilin 2 	ENSMUST00000066882.8|Pfn2|ENSMUSG00000027805.10|profilin 2
mm10_v2_chr19_+_4855129_4855269	0.757978	Rfx3_Rfx1_Rfx4	ENSMUST00000119694.1|Ctsf|ENSMUSG00000083282.2|cathepsin F
mm10_v2_chr3_-_108085346_108085412	0.755084	Rfx3_Rfx1_Rfx4	ENSMUST00000078912.5|Ampd2|ENSMUSG00000027889.11|adenosine monophosphate deaminase 2
mm10_v2_chr17_+_33955812_33955901	0.754333	Rfx3_Rfx1_Rfx4	ENSMUST00000025178.9|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast) 	ENSMUST00000114330.2|Vps52|ENSMUSG00000024319.11|vacuolar protein sorting 52 (yeast)
mm10_v2_chr6_-_119330668_119330694	0.745403	Rfx3_Rfx1_Rfx4	ENSMUST00000112756.1|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr6_-_122340200_122340244	0.736442	Rfx3_Rfx1_Rfx4	ENSMUST00000159384.1|Phc1|ENSMUSG00000040669.8|polyhomeotic-like 1 (Drosophila)
mm10_v2_chr1_-_124045523_124045571	0.733123	Rfx3_Rfx1_Rfx4	ENSMUST00000112606.1|Dpp10|ENSMUSG00000036815.10|dipeptidylpeptidase 10
mm10_v2_chr10_+_83722865_83722947	0.731233	Rfx3_Rfx1_Rfx4	ENSMUST00000150459.1|1500009L16Rik|ENSMUSG00000087651.2|RIKEN cDNA 1500009L16 gene
mm10_v2_chr2_-_75978164_75978206	0.723008	Rfx3_Rfx1_Rfx4	ENSMUST00000099995.3|Ttc30a2|ENSMUSG00000075272.3|tetratricopeptide repeat domain 30A2
mm10_v2_chr9_-_50728067_50728129	0.722164	Rfx3_Rfx1_Rfx4	ENSMUST00000117646.1|Dixdc1|ENSMUSG00000032064.11|DIX domain containing 1
mm10_v2_chr4_+_152478142_152478183	0.719859	Rfx3_Rfx1_Rfx4	ENSMUST00000081393.3|Nphp4|ENSMUSG00000039577.11|nephronophthisis 4 (juvenile) homolog (human)
mm10_v2_chr7_-_43313063_43313116	0.718743	Rfx3_Rfx1_Rfx4	ENSMUST00000135130.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715 	ENSMUST00000139061.1|Zfp715|ENSMUSG00000012640.10|zinc finger protein 715
mm10_v2_chrX_-_152368680_152368740	0.713715	Rfx3_Rfx1_Rfx4	ENSMUST00000070316.5|Gpr173|ENSMUSG00000056679.7|G-protein coupled receptor 173
mm10_v2_chr9_-_110117303_110117353	0.711507	Rfx3_Rfx1_Rfx4	ENSMUST00000136969.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr2_+_29788237_29788302	0.697044	Rfx3_Rfx1_Rfx4	ENSMUST00000028137.3|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast) 	ENSMUST00000148791.1|Coq4|ENSMUSG00000026798.4|coenzyme Q4 homolog (yeast)
mm10_v2_chr17_+_33555719_33555796	0.684475	Rfx3_Rfx1_Rfx4	ENSMUST00000087605.5|Myo1f|ENSMUSG00000024300.10|myosin IF 	ENSMUST00000174695.1|Myo1f|ENSMUSG00000024300.10|myosin IF
mm10_v2_chr10_+_81606303_81606303	0.678311	Rfx3_Rfx1_Rfx4	ENSMUST00000119492.1|BC025920|ENSMUSG00000074862.5|cDNA sequence BC025920
mm10_v2_chr5_+_66260121_66260312	0.676408	Rfx3_Rfx1_Rfx4	ENSMUST00000031109.3|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7 	ENSMUST00000113720.1|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chr4_+_126096623_126096708	0.658922	Rfx3_Rfx1_Rfx4	ENSMUST00000055575.7|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000179323.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10 	ENSMUST00000151831.1|Lsm10|ENSMUSG00000050188.8|U7 snRNP-specific Sm-like protein LSM10
mm10_v2_chr2_-_134644125_134644145	0.646358	Rfx3_Rfx1_Rfx4	ENSMUST00000038228.4|Tmx4|ENSMUSG00000034723.5|thioredoxin-related transmembrane protein 4
mm10_v2_chr17_+_24696234_24696320	0.644241	Rfx3_Rfx1_Rfx4	ENSMUST00000019464.7|Noxo1|ENSMUSG00000019320.7|NADPH oxidase organizer 1
mm10_v2_chr9_+_107563246_107563285	0.640893	Rfx3_Rfx1_Rfx4	ENSMUST00000010198.3|Tusc2|ENSMUSG00000010054.3|tumor suppressor candidate 2
mm10_v2_chr9_-_110117379_110117445	0.628998	Rfx3_Rfx1_Rfx4	ENSMUST00000111991.2|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000149199.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000035056.7|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000148287.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30 	ENSMUST00000127744.1|Dhx30|ENSMUSG00000032480.11|DEAH (Asp-Glu-Ala-His) box polypeptide 30
mm10_v2_chr18_-_31609893_31609927	0.621561	Rfx3_Rfx1_Rfx4	ENSMUST00000060396.6|Slc25a46|ENSMUSG00000024259.8|solute carrier family 25, member 46
mm10_v2_chr9_+_98563704_98563737	0.619636	Rfx3_Rfx1_Rfx4	ENSMUST00000035033.5|Copb2|ENSMUSG00000032458.5|coatomer protein complex, subunit beta 2 (beta prime)
mm10_v2_chr17_+_8165501_8165540	0.618317	Rfx3_Rfx1_Rfx4	ENSMUST00000097419.3|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner 	ENSMUST00000024636.8|Fgfr1op|ENSMUSG00000069135.5|Fgfr1 oncogene partner
mm10_v2_chr8_+_20567716_20567716	0.602331	Rfx3_Rfx1_Rfx4	ENSMUST00000178995.1|Gm21092|ENSMUSG00000095403.1|predicted gene, 21092
mm10_v2_chrX_+_7884244_7884313	0.599564	Rfx3_Rfx1_Rfx4	ENSMUST00000115663.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr7_-_126922887_126922926	0.596486	Rfx3_Rfx1_Rfx4	ENSMUST00000134134.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000119781.1|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219 	ENSMUST00000121612.2|Tmem219|ENSMUSG00000060538.8|transmembrane protein 219
mm10_v2_chr4_+_118620799_118620899	0.593117	Rfx3_Rfx1_Rfx4	ENSMUST00000030501.8|Ebna1bp2|ENSMUSG00000028729.9|EBNA1 binding protein 2
mm10_v2_chr15_+_78428650_78428671	0.592861	Rfx3_Rfx1_Rfx4	ENSMUST00000159771.1|Kctd17|ENSMUSG00000033287.9|potassium channel tetramerisation domain containing 17
mm10_v2_chr18_-_35662180_35662195	0.591693	Rfx3_Rfx1_Rfx4	ENSMUST00000025209.4|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24 	ENSMUST00000096573.2|Spata24|ENSMUSG00000024352.5|spermatogenesis associated 24
mm10_v2_chr7_-_45830776_45830944	0.591559	Rfx3_Rfx1_Rfx4	ENSMUST00000107723.2|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1 	ENSMUST00000131384.1|Grwd1|ENSMUSG00000053801.10|glutamate-rich WD repeat containing 1
mm10_v2_chr6_+_119175247_119175292	0.588978	Rfx3_Rfx1_Rfx4	ENSMUST00000112777.2|Dcp1b|ENSMUSG00000041477.8|DCP1 decapping enzyme homolog B (S. cerevisiae) 	ENSMUST00000073909.5|Dcp1b|ENSMUSG00000041477.8|DCP1 decapping enzyme homolog B (S. cerevisiae)
mm10_v2_chr14_-_41006882_41006976	0.588934	Rfx3_Rfx1_Rfx4	ENSMUST00000152837.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A 	ENSMUST00000134715.1|Fam213a|ENSMUSG00000021792.9|family with sequence similarity 213, member A
mm10_v2_chr7_+_140882430_140882472	0.588865	Rfx3_Rfx1_Rfx4	ENSMUST00000164681.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 	ENSMUST00000163610.1|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr9_-_50617228_50617289	0.586003	Rfx3_Rfx1_Rfx4	ENSMUST00000147671.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000145139.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000155435.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr7_+_126487344_126487390	0.585075	Rfx3_Rfx1_Rfx4	ENSMUST00000098048.4|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial 	ENSMUST00000106392.3|Tufm|ENSMUSG00000073838.4|Tu translation elongation factor, mitochondrial
mm10_v2_chr9_-_59036387_59036460	0.584114	Rfx3_Rfx1_Rfx4	ENSMUST00000068664.5|Neo1|ENSMUSG00000032340.7|neogenin
mm10_v2_chr6_-_119330723_119330800	0.582632	Rfx3_Rfx1_Rfx4	ENSMUST00000068351.7|Lrtm2|ENSMUSG00000055003.8|leucine-rich repeats and transmembrane domains 2
mm10_v2_chr7_+_30232032_30232050	0.581762	Rfx3_Rfx1_Rfx4	ENSMUST00000149654.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr10_+_84917616_84917656	0.576137	Rfx3_Rfx1_Rfx4	ENSMUST00000038523.7|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 	ENSMUST00000095385.3|Ric8b|ENSMUSG00000035620.8|resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
mm10_v2_chr17_+_24549950_24550062	0.5692	Rfx3_Rfx1_Rfx4	ENSMUST00000035565.3|Pkd1|ENSMUSG00000032855.5|polycystic kidney disease 1 homolog
mm10_v2_chr5_+_38039224_38039299	0.567912	Rfx3_Rfx1_Rfx4	ENSMUST00000031008.6|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000042146.8|Stx18|ENSMUSG00000029125.8|syntaxin 18 	ENSMUST00000154929.1|Stx18|ENSMUSG00000029125.8|syntaxin 18
mm10_v2_chr6_+_137735078_137735151	0.567394	Rfx3_Rfx1_Rfx4	ENSMUST00000064910.6|Strap|ENSMUSG00000030224.10|serine/threonine kinase receptor associated protein
mm10_v2_chr11_+_21091291_21091339	0.565247	Rfx3_Rfx1_Rfx4	ENSMUST00000093290.5|Peli1|ENSMUSG00000020134.7|pellino 1
mm10_v2_chr2_-_140066661_140066805	0.563396	Rfx3_Rfx1_Rfx4	ENSMUST00000046656.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000099304.3|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1 	ENSMUST00000110079.2|Tasp1|ENSMUSG00000039033.5|taspase, threonine aspartase 1
mm10_v2_chr11_+_78536355_78536368	0.561515	Rfx3_Rfx1_Rfx4	ENSMUST00000128788.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr7_+_3290553_3290586	0.551349	Rfx3_Rfx1_Rfx4	ENSMUST00000096744.5|Myadm|ENSMUSG00000068566.6|myeloid-associated differentiation marker
mm10_v2_chr2_+_36136384_36136428	0.549392	Rfx3_Rfx1_Rfx4	ENSMUST00000028250.2|Mrrf|ENSMUSG00000026887.3|mitochondrial ribosome recycling factor
mm10_v2_chr11_-_100619576_100619596	0.548138	Rfx3_Rfx1_Rfx4	ENSMUST00000155152.1|Dnajc7|ENSMUSG00000014195.9|DnaJ (Hsp40) homolog, subfamily C, member 7
mm10_v2_chrX_+_7884321_7884378	0.548039	Rfx3_Rfx1_Rfx4	ENSMUST00000096514.3|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2 	ENSMUST00000123277.1|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr1_+_180109192_180109265	0.547504	Rfx3_Rfx1_Rfx4	ENSMUST00000143176.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha 	ENSMUST00000135056.1|Cdc42bpa|ENSMUSG00000026490.11|CDC42 binding protein kinase alpha
mm10_v2_chr2_+_153161303_153161339	0.541984	Rfx3_Rfx1_Rfx4	ENSMUST00000089027.2|Tm9sf4|ENSMUSG00000068040.4|transmembrane 9 superfamily protein member 4
mm10_v2_chrX_+_7884022_7884055	0.541078	Rfx3_Rfx1_Rfx4	ENSMUST00000115660.4|Slc35a2|ENSMUSG00000031156.11|solute carrier family 35 (UDP-galactose transporter), member A2
mm10_v2_chr10_+_41490436_41490483	0.540309	Rfx3_Rfx1_Rfx4	ENSMUST00000105507.3|Ppil6|ENSMUSG00000078451.4|peptidylprolyl isomerase (cyclophilin)-like 6
mm10_v2_chr7_+_140881898_140881968	0.531817	Rfx3_Rfx1_Rfx4	ENSMUST00000026560.7|Psmd13|ENSMUSG00000025487.8|proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
mm10_v2_chr11_-_107337556_107337637	0.519916	Rfx3_Rfx1_Rfx4	ENSMUST00000040380.6|Pitpnc1|ENSMUSG00000040430.12|phosphatidylinositol transfer protein, cytoplasmic 1
mm10_v2_chr14_+_11227511_11227552	0.50731	Rfx3_Rfx1_Rfx4	ENSMUST00000080237.3|Rpl21-ps4|ENSMUSG00000072714.1|ribosomal protein L21, pseudogene 4
mm10_v2_chr4_-_56802265_56802331	0.506191	Rfx3_Rfx1_Rfx4	ENSMUST00000030140.2|Ikbkap|ENSMUSG00000028431.5|inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein
mm10_v2_chr9_-_59486610_59486621	0.505046	Rfx3_Rfx1_Rfx4	ENSMUST00000171975.1|Arih1|ENSMUSG00000025234.5|ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)
mm10_v2_chr17_+_6430112_6430204	0.50338	Rfx3_Rfx1_Rfx4	ENSMUST00000179569.1|Dynlt1b|ENSMUSG00000096255.1|dynein light chain Tctex-type 1B
mm10_v2_chr7_+_19076242_19076273	0.502171	Rfx3_Rfx1_Rfx4	ENSMUST00000032570.7|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif 	ENSMUST00000108479.1|Dmwd|ENSMUSG00000030410.10|dystrophia myotonica-containing WD repeat motif
mm10_v2_chr14_-_55635602_55635718	0.498159	Rfx3_Rfx1_Rfx4	ENSMUST00000047131.9|Ipo4|ENSMUSG00000002319.9|importin 4
mm10_v2_chr14_+_48446128_48446276	0.495719	Rfx3_Rfx1_Rfx4	ENSMUST00000124720.1|Tmem260|ENSMUSG00000036339.11|transmembrane protein 260
mm10_v2_chr4_-_12087912_12088011	0.49359	Rfx3_Rfx1_Rfx4	ENSMUST00000050686.3|Tmem67|ENSMUSG00000049488.8|transmembrane protein 67
mm10_v2_chr2_+_112239468_112239508	0.49224	Rfx3_Rfx1_Rfx4	ENSMUST00000028554.3|Lpcat4|ENSMUSG00000027134.4|lysophosphatidylcholine acyltransferase 4
mm10_v2_chr2_-_18998126_18998202	0.488299	Rfx3_Rfx1_Rfx4	ENSMUST00000006912.5|Pip4k2a|ENSMUSG00000026737.6|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha
mm10_v2_chr15_-_78174090_78174109	0.483343	Rfx3_Rfx1_Rfx4	ENSMUST00000016781.6|Ift27|ENSMUSG00000016637.6|intraflagellar transport 27
mm10_v2_chr15_-_36794498_36794547	0.481168	Rfx3_Rfx1_Rfx4	ENSMUST00000110361.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000022894.7|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide 	ENSMUST00000110359.1|Ywhaz|ENSMUSG00000022285.10|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide
mm10_v2_chr5_-_122372230_122372390	0.475731	Rfx3_Rfx1_Rfx4	ENSMUST00000031419.5|Fam216a|ENSMUSG00000029463.5|family with sequence similarity 216, member A
mm10_v2_chr10_-_39899238_39899238	0.470152	Rfx3_Rfx1_Rfx4	ENSMUST00000178563.1|AA474331|ENSMUSG00000096687.1|expressed sequence AA474331
mm10_v2_chr10_+_81574699_81574739	0.459197	Rfx3_Rfx1_Rfx4	ENSMUST00000131794.1|Tle2|ENSMUSG00000034771.9|transducin-like enhancer of split 2, homolog of Drosophila E(spl) 	ENSMUST00000136341.1|Tle2|ENSMUSG00000034771.9|transducin-like enhancer of split 2, homolog of Drosophila E(spl)
mm10_v2_chr18_+_56707725_56707940	0.452341	Rfx3_Rfx1_Rfx4	ENSMUST00000025486.8|Lmnb1|ENSMUSG00000024590.8|lamin B1
mm10_v2_chr6_+_91473695_91473787	0.450076	Rfx3_Rfx1_Rfx4	ENSMUST00000032183.4|Tmem43|ENSMUSG00000030095.4|transmembrane protein 43
mm10_v2_chr11_+_90638127_90638207	0.448764	Rfx3_Rfx1_Rfx4	ENSMUST00000020851.8|Cox11|ENSMUSG00000020544.8|cytochrome c oxidase assembly protein 11
mm10_v2_chr11_-_45955183_45955193	0.445295	Rfx3_Rfx1_Rfx4	ENSMUST00000109254.1|Thg1l|ENSMUSG00000011254.10|tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
mm10_v2_chr11_-_83302586_83302637	0.445101	Rfx3_Rfx1_Rfx4	ENSMUST00000176374.1|Pex12|ENSMUSG00000018733.4|peroxisomal biogenesis factor 12
mm10_v2_chr7_-_67222412_67222458	0.444804	Rfx3_Rfx1_Rfx4	ENSMUST00000181631.1|1700112J16Rik|ENSMUSG00000097527.1|RIKEN cDNA 1700112J16 gene
mm10_v2_chr7_+_44428938_44429018	0.44434	Rfx3_Rfx1_Rfx4	ENSMUST00000127790.1|Lrrc4b|ENSMUSG00000047085.8|leucine rich repeat containing 4B
mm10_v2_chr17_+_56717759_56717819	0.441723	Rfx3_Rfx1_Rfx4	ENSMUST00000002452.6|Ndufa11|ENSMUSG00000002379.6|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11
mm10_v2_chr12_+_84361968_84362018	0.436497	Rfx3_Rfx1_Rfx4	ENSMUST00000021661.6|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr11_-_72207413_72207488	0.43429	Rfx3_Rfx1_Rfx4	ENSMUST00000108505.1|4933427D14Rik|ENSMUSG00000020807.8|RIKEN cDNA 4933427D14 gene
mm10_v2_chr9_-_109059216_109059259	0.424806	Rfx3_Rfx1_Rfx4	ENSMUST00000112053.1|Trex1|ENSMUSG00000049734.8|three prime repair exonuclease 1
mm10_v2_chr8_+_45975514_45975558	0.424682	Rfx3_Rfx1_Rfx4	ENSMUST00000034051.6|Ufsp2|ENSMUSG00000031634.6|UFM1-specific peptidase 2
mm10_v2_chr15_+_31276491_31276491	0.421599	Rfx3_Rfx1_Rfx4	ENSMUST00000068987.5|Fam136b-ps|ENSMUSG00000055416.5|family with sequence similarity 136, member B, pseudogene
mm10_v2_chr10_-_80900749_80900969	0.420759	Rfx3_Rfx1_Rfx4	ENSMUST00000020440.6|Timm13|ENSMUSG00000020219.6|translocase of inner mitochondrial membrane 13
mm10_v2_chr6_-_29609811_29609887	0.420024	Rfx3_Rfx1_Rfx4	ENSMUST00000012679.8|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr9_+_22003035_22003046	0.412985	Rfx3_Rfx1_Rfx4	ENSMUST00000115331.2|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H 	ENSMUST00000003493.7|Prkcsh|ENSMUSG00000003402.7|protein kinase C substrate 80K-H
mm10_v2_chr11_-_120991305_120991339	0.411299	Rfx3_Rfx1_Rfx4	ENSMUST00000018274.3|Csnk1d|ENSMUSG00000025162.11|casein kinase 1, delta
mm10_v2_chr2_+_91922178_91922194	0.408922	Rfx3_Rfx1_Rfx4	ENSMUST00000170432.1|Chrm4|ENSMUSG00000040495.3|cholinergic receptor, muscarinic 4
mm10_v2_chr16_-_4964168_4964237	0.407828	Rfx3_Rfx1_Rfx4	ENSMUST00000023157.4|Anks3|ENSMUSG00000022515.5|ankyrin repeat and sterile alpha motif domain containing 3
mm10_v2_chr3_-_144720315_144720336	0.405776	Rfx3_Rfx1_Rfx4	ENSMUST00000163279.1|Sh3glb1|ENSMUSG00000037062.9|SH3-domain GRB2-like B1 (endophilin)
mm10_v2_chr1_-_133753681_133753857	0.398937	Rfx3_Rfx1_Rfx4	ENSMUST00000125659.1|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000165602.2|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4 	ENSMUST00000048953.7|Atp2b4|ENSMUSG00000026463.11|ATPase, Ca++ transporting, plasma membrane 4
mm10_v2_chr8_+_83666827_83666882	0.398545	Rfx3_Rfx1_Rfx4	ENSMUST00000019608.5|Ptger1|ENSMUSG00000019464.5|prostaglandin E receptor 1 (subtype EP1)
mm10_v2_chr11_+_120467635_120467719	0.395827	Rfx3_Rfx1_Rfx4	ENSMUST00000140862.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106205.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000106203.1|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate 	ENSMUST00000026900.7|Hgs|ENSMUSG00000025793.9|HGF-regulated tyrosine kinase substrate
mm10_v2_chr7_-_31054815_31054853	0.394205	Rfx3_Rfx1_Rfx4	ENSMUST00000071697.4|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1 	ENSMUST00000108110.3|Fxyd1|ENSMUSG00000036570.8|FXYD domain-containing ion transport regulator 1
mm10_v2_chr2_+_119288725_119288771	0.380983	Rfx3_Rfx1_Rfx4	ENSMUST00000037280.4|Vps18|ENSMUSG00000034216.6|vacuolar protein sorting 18 (yeast)
mm10_v2_chr11_+_88047693_88047727	0.378116	Rfx3_Rfx1_Rfx4	ENSMUST00000079866.4|Srsf1|ENSMUSG00000018379.11|serine/arginine-rich splicing factor 1
mm10_v2_chr17_-_36951636_36951741	0.377716	Rfx3_Rfx1_Rfx4	ENSMUST00000040402.7|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11 	ENSMUST00000174711.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr12_+_105032638_105032705	0.377573	Rfx3_Rfx1_Rfx4	ENSMUST00000021522.3|Glrx5|ENSMUSG00000021102.3|glutaredoxin 5 homolog (S. cerevisiae)
mm10_v2_chr3_+_105959369_105959427	0.367403	Rfx3_Rfx1_Rfx4	ENSMUST00000010278.5|Wdr77|ENSMUSG00000000561.8|WD repeat domain 77
mm10_v2_chr11_+_72207537_72207620	0.366268	Rfx3_Rfx1_Rfx4	ENSMUST00000021158.3|Txndc17|ENSMUSG00000020803.3|thioredoxin domain containing 17
mm10_v2_chr8_+_105701624_105701693	0.360588	Rfx3_Rfx1_Rfx4	ENSMUST00000093195.6|Pard6a|ENSMUSG00000005699.9|par-6 (partitioning defective 6,) homolog alpha (C. elegans)
mm10_v2_chr17_-_46752170_46752231	0.360388	Rfx3_Rfx1_Rfx4	ENSMUST00000121671.1|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish) 	ENSMUST00000059844.6|Cnpy3|ENSMUSG00000023973.7|canopy 3 homolog (zebrafish)
mm10_v2_chr3_+_95134088_95134088	0.35516	Rfx3_Rfx1_Rfx4	ENSMUST00000066386.5|Lysmd1|ENSMUSG00000053769.5|LysM, putative peptidoglycan-binding, domain containing 1
mm10_v2_chr8_-_69890967_69890967	0.350634	Rfx3_Rfx1_Rfx4	ENSMUST00000152938.1|Yjefn3|ENSMUSG00000048967.9|YjeF N-terminal domain containing 3
mm10_v2_chr15_+_79229140_79229173	0.346	Rfx3_Rfx1_Rfx4	ENSMUST00000163571.1|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1
mm10_v2_chr4_+_6365650_6365720	0.344445	Rfx3_Rfx1_Rfx4	ENSMUST00000029912.4|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000103008.5|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000175769.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000108374.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein 	ENSMUST00000140830.1|Sdcbp|ENSMUSG00000028249.9|syndecan binding protein
mm10_v2_chr9_-_51102062_51102085	0.343205	Rfx3_Rfx1_Rfx4	ENSMUST00000170947.1|4833427G06Rik|ENSMUSG00000032057.8|RIKEN cDNA 4833427G06 gene
mm10_v2_chr17_+_43389436_43389497	0.338073	Rfx3_Rfx1_Rfx4	ENSMUST00000113599.1|Gpr116|ENSMUSG00000056492.5|G protein-coupled receptor 116
mm10_v2_chr10_+_39732099_39732140	0.336895	Rfx3_Rfx1_Rfx4	ENSMUST00000019986.6|Rev3l|ENSMUSG00000019841.9|REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
mm10_v2_chr7_+_30232310_30232350	0.322504	Rfx3_Rfx1_Rfx4	ENSMUST00000108193.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I 	ENSMUST00000108192.1|Polr2i|ENSMUSG00000019738.9|polymerase (RNA) II (DNA directed) polypeptide I
mm10_v2_chr16_+_4741543_4741592	0.314784	Rfx3_Rfx1_Rfx4	ENSMUST00000120232.1|Hmox2|ENSMUSG00000004070.9|heme oxygenase (decycling) 2
mm10_v2_chr17_+_71183545_71183570	0.311665	Rfx3_Rfx1_Rfx4	ENSMUST00000156570.1|Lpin2|ENSMUSG00000024052.11|lipin 2
mm10_v2_chr7_-_118856254_118856373	0.311143	Rfx3_Rfx1_Rfx4	ENSMUST00000033277.7|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr2_-_92024502_92024529	0.310907	Rfx3_Rfx1_Rfx4	ENSMUST00000028663.4|Creb3l1|ENSMUSG00000027230.9|cAMP responsive element binding protein 3-like 1
mm10_v2_chrX_-_133898399_133898429	0.309693	Rfx3_Rfx1_Rfx4	ENSMUST00000087557.5|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr19_-_3282958_3283048	0.309002	Rfx3_Rfx1_Rfx4	ENSMUST00000119292.1|Ighmbp2|ENSMUSG00000024831.7|immunoglobulin mu binding protein 2 	ENSMUST00000025751.3|Ighmbp2|ENSMUSG00000024831.7|immunoglobulin mu binding protein 2
mm10_v2_chr17_-_45592569_45592581	0.307677	Rfx3_Rfx1_Rfx4	ENSMUST00000163492.1|Slc29a1|ENSMUSG00000023942.9|solute carrier family 29 (nucleoside transporters), member 1
mm10_v2_chr1_-_171360798_171360798	0.303205	Rfx3_Rfx1_Rfx4	ENSMUST00000061878.4|Klhdc9|ENSMUSG00000045259.4|kelch domain containing 9
mm10_v2_chr1_+_69826986_69827003	0.300952	Rfx3_Rfx1_Rfx4	ENSMUST00000065425.5|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16 	ENSMUST00000113940.2|Spag16|ENSMUSG00000053153.8|sperm associated antigen 16
mm10_v2_chr17_+_78937124_78937183	0.300044	Rfx3_Rfx1_Rfx4	ENSMUST00000024887.4|Ndufaf7|ENSMUSG00000024082.4|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7
mm10_v2_chr17_-_36951338_36951425	0.296644	Rfx3_Rfx1_Rfx4	ENSMUST00000173540.1|Ppp1r11|ENSMUSG00000036398.7|protein phosphatase 1, regulatory (inhibitor) subunit 11
mm10_v2_chr19_-_10555724_10555761	0.295446	Rfx3_Rfx1_Rfx4	ENSMUST00000145210.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000123788.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000059582.2|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216 	ENSMUST00000154383.1|Tmem216|ENSMUSG00000024667.5|transmembrane protein 216
mm10_v2_chr4_-_155086271_155086379	0.293921	Rfx3_Rfx1_Rfx4	ENSMUST00000030914.3|Rer1|ENSMUSG00000029048.3|RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
mm10_v2_chr5_+_66259890_66259912	0.28932	Rfx3_Rfx1_Rfx4	ENSMUST00000065530.6|Nsun7|ENSMUSG00000029206.7|NOL1/NOP2/Sun domain family, member 7
mm10_v2_chrX_-_51205773_51205839	0.28781	Rfx3_Rfx1_Rfx4	ENSMUST00000114875.1|Mbnl3|ENSMUSG00000036109.11|muscleblind-like 3 (Drosophila)
mm10_v2_chr3_-_116508035_116508070	0.286224	Rfx3_Rfx1_Rfx4	ENSMUST00000153005.1|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr1_+_118389058_118389058	0.281743	Rfx3_Rfx1_Rfx4	ENSMUST00000049404.6|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000070989.7|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000165223.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1 	ENSMUST00000178710.1|Clasp1|ENSMUSG00000064302.7|CLIP associating protein 1
mm10_v2_chr3_+_103968588_103968661	0.279662	Rfx3_Rfx1_Rfx4	ENSMUST00000156262.1|Phtf1|ENSMUSG00000058388.8|putative homeodomain transcription factor 1
mm10_v2_chr11_+_78536393_78536492	0.277571	Rfx3_Rfx1_Rfx4	ENSMUST00000050366.8|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20 	ENSMUST00000108275.1|Ift20|ENSMUSG00000001105.9|intraflagellar transport 20
mm10_v2_chr14_-_25927250_25927250	0.275596	Rfx3_Rfx1_Rfx4	ENSMUST00000100811.5|Tmem254a|ENSMUSG00000072676.5|transmembrane protein 254a
mm10_v2_chr11_+_101425068_101425114	0.269254	Rfx3_Rfx1_Rfx4	ENSMUST00000040561.5|Rundc1|ENSMUSG00000035007.5|RUN domain containing 1
mm10_v2_chr6_-_128424883_128424935	0.266862	Rfx3_Rfx1_Rfx4	ENSMUST00000001559.8|Itfg2|ENSMUSG00000001518.10|integrin alpha FG-GAP repeat containing 2
mm10_v2_chr4_-_133545906_133546011	0.266	Rfx3_Rfx1_Rfx4	ENSMUST00000030665.6|Nudc|ENSMUSG00000028851.6|nuclear distribution gene C homolog (Aspergillus)
mm10_v2_chr7_-_125491397_125491413	0.264539	Rfx3_Rfx1_Rfx4	ENSMUST00000138616.1|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr7_-_19149189_19149273	0.260946	Rfx3_Rfx1_Rfx4	ENSMUST00000032566.1|Qpctl|ENSMUSG00000030407.1|glutaminyl-peptide cyclotransferase-like
mm10_v2_chr16_-_91069142_91069159	0.258057	Rfx3_Rfx1_Rfx4	ENSMUST00000035689.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene 	ENSMUST00000114076.1|4932438H23Rik|ENSMUSG00000039851.5|RIKEN cDNA 4932438H23 gene
mm10_v2_chr2_-_151744142_151744205	0.254269	Rfx3_Rfx1_Rfx4	ENSMUST00000109869.1|Psmf1|ENSMUSG00000032869.9|proteasome (prosome, macropain) inhibitor subunit 1
mm10_v2_chr4_+_103114712_103114762	0.251092	Rfx3_Rfx1_Rfx4	ENSMUST00000143417.1|Mier1|ENSMUSG00000028522.10|mesoderm induction early response 1 homolog (Xenopus laevis
mm10_v2_chr3_-_155093346_155093385	0.248726	Rfx3_Rfx1_Rfx4	ENSMUST00000066568.4|Fpgt|ENSMUSG00000053870.6|fucose-1-phosphate guanylyltransferase
mm10_v2_chr15_-_75841907_75841932	0.245968	Rfx3_Rfx1_Rfx4	ENSMUST00000100538.2|Zc3h3|ENSMUSG00000075600.2|zinc finger CCCH type containing 3
mm10_v2_chrX_-_133898292_133898377	0.243529	Rfx3_Rfx1_Rfx4	ENSMUST00000176718.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6 	ENSMUST00000176641.1|Tspan6|ENSMUSG00000067377.6|tetraspanin 6
mm10_v2_chr9_-_50617428_50617467	0.241876	Rfx3_Rfx1_Rfx4	ENSMUST00000131351.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823 	ENSMUST00000171462.1|AU019823|ENSMUSG00000059820.8|expressed sequence AU019823
mm10_v2_chr18_-_61176994_61177057	0.241519	Rfx3_Rfx1_Rfx4	ENSMUST00000091884.4|Hmgxb3|ENSMUSG00000024622.7|HMG box domain containing 3
mm10_v2_chr2_-_30178422_30178473	0.230059	Rfx3_Rfx1_Rfx4	ENSMUST00000100220.4|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed 	ENSMUST00000179795.1|D2Wsu81e|ENSMUSG00000039660.10|DNA segment, Chr 2, Wayne State University 81, expressed
mm10_v2_chr6_-_29609607_29609642	0.229267	Rfx3_Rfx1_Rfx4	ENSMUST00000115251.1|Tnpo3|ENSMUSG00000012535.8|transportin 3
mm10_v2_chr9_-_67559703_67559703	0.224628	Rfx3_Rfx1_Rfx4	ENSMUST00000040025.7|Tln2|ENSMUSG00000052698.8|talin 2
mm10_v2_chr12_+_84361636_84361657	0.217627	Rfx3_Rfx1_Rfx4	ENSMUST00000110276.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr8_-_33747724_33747781	0.217605	Rfx3_Rfx1_Rfx4	ENSMUST00000179364.1|Smim18|ENSMUSG00000094500.1|small integral membrane protein 18
mm10_v2_chr9_+_108002501_108002680	0.215998	Rfx3_Rfx1_Rfx4	ENSMUST00000035214.4|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1 	ENSMUST00000175874.1|Ip6k1|ENSMUSG00000032594.5|inositol hexaphosphate kinase 1
mm10_v2_chr6_-_33060172_33060252	0.214241	Rfx3_Rfx1_Rfx4	ENSMUST00000115091.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3 	ENSMUST00000127666.1|Chchd3|ENSMUSG00000053768.7|coiled-coil-helix-coiled-coil-helix domain containing 3
mm10_v2_chr17_+_24896488_24896530	0.213485	Rfx3_Rfx1_Rfx4	ENSMUST00000024978.6|Nme3|ENSMUSG00000073435.4|NME/NM23 nucleoside diphosphate kinase 3
mm10_v2_chr13_-_34002740_34002783	0.211756	Rfx3_Rfx1_Rfx4	ENSMUST00000167237.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a 	ENSMUST00000168400.1|Serpinb6a|ENSMUSG00000060147.9|serine (or cysteine) peptidase inhibitor, clade B, member 6a
mm10_v2_chr18_-_60713389_60713389	0.21171	Rfx3_Rfx1_Rfx4	ENSMUST00000169273.1|Ndst1|ENSMUSG00000054008.8|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
mm10_v2_chr10_-_80742211_80742280	0.211126	Rfx3_Rfx1_Rfx4	ENSMUST00000020420.7|Ap3d1|ENSMUSG00000020198.7|adaptor-related protein complex 3, delta 1 subunit
mm10_v2_chr11_-_71033462_71033513	0.21002	Rfx3_Rfx1_Rfx4	ENSMUST00000156068.2|6330403K07Rik|ENSMUSG00000018451.6|RIKEN cDNA 6330403K07 gene
mm10_v2_chr7_-_4684963_4684997	0.205719	Rfx3_Rfx1_Rfx4	ENSMUST00000079970.4|Hspbp1|ENSMUSG00000063802.4|HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1
mm10_v2_chr8_-_83458386_83458397	0.203297	Rfx3_Rfx1_Rfx4	ENSMUST00000081506.3|Scoc|ENSMUSG00000063253.4|short coiled-coil protein
mm10_v2_chr13_+_112987802_112987838	0.202378	Rfx3_Rfx1_Rfx4	ENSMUST00000038404.4|Ccno|ENSMUSG00000042417.4|cyclin O
mm10_v2_chr2_-_167060417_167060430	0.199643	Rfx3_Rfx1_Rfx4	ENSMUST00000155281.1|Znfx1|ENSMUSG00000039501.8|zinc finger, NFX1-type containing 1
mm10_v2_chr4_+_138434647_138434748	0.198948	Rfx3_Rfx1_Rfx4	ENSMUST00000044058.4|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1 	ENSMUST00000105813.1|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1 	ENSMUST00000105815.1|Mul1|ENSMUSG00000041241.6|mitochondrial ubiquitin ligase activator of NFKB 1
mm10_v2_chr7_-_125491586_125491596	0.198371	Rfx3_Rfx1_Rfx4	ENSMUST00000033006.7|Nsmce1|ENSMUSG00000030750.7|non-SMC element 1 homolog (S. cerevisiae)
mm10_v2_chr14_-_70153811_70153846	0.190348	Rfx3_Rfx1_Rfx4	ENSMUST00000035612.5|Ccar2|ENSMUSG00000033712.5|cell cycle activator and apoptosis regulator 2
mm10_v2_chr5_-_140702241_140702378	0.188725	Rfx3_Rfx1_Rfx4	ENSMUST00000077890.5|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000041783.7|Iqce|ENSMUSG00000036555.8|IQ motif containing E 	ENSMUST00000142081.1|Iqce|ENSMUSG00000036555.8|IQ motif containing E
mm10_v2_chrX_-_49788204_49788243	0.188016	Rfx3_Rfx1_Rfx4	ENSMUST00000114893.1|Igsf1|ENSMUSG00000031111.10|immunoglobulin superfamily, member 1
mm10_v2_chr6_+_117906755_117906801	0.186575	Rfx3_Rfx1_Rfx4	ENSMUST00000170346.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000179224.1|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F 	ENSMUST00000035493.7|Hnrnpf|ENSMUSG00000042079.7|heterogeneous nuclear ribonucleoprotein F
mm10_v2_chr13_+_97137937_97138040	0.185479	Rfx3_Rfx1_Rfx4	ENSMUST00000042084.6|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000160139.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161639.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161913.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161825.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000161929.1|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2 	ENSMUST00000022170.7|Gfm2|ENSMUSG00000021666.10|G elongation factor, mitochondrial 2
mm10_v2_chr5_+_122372451_122372513	0.181545	Rfx3_Rfx1_Rfx4	ENSMUST00000031420.4|Gpn3|ENSMUSG00000029464.4|GPN-loop GTPase 3
mm10_v2_chr11_+_101279092_101279111	0.181042	Rfx3_Rfx1_Rfx4	ENSMUST00000103107.4|Cntd1|ENSMUSG00000078653.4|cyclin N-terminal domain containing 1
mm10_v2_chr15_+_103272893_103272911	0.180164	Rfx3_Rfx1_Rfx4	ENSMUST00000100162.3|Copz1|ENSMUSG00000060992.8|coatomer protein complex, subunit zeta 1
mm10_v2_chr7_+_127588698_127588725	0.170689	Rfx3_Rfx1_Rfx4	ENSMUST00000033088.6|Rnf40|ENSMUSG00000030816.7|ring finger protein 40
mm10_v2_chr9_-_22002599_22002640	0.169018	Rfx3_Rfx1_Rfx4	ENSMUST00000115336.2|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151 	ENSMUST00000044926.5|Ccdc151|ENSMUSG00000039632.6|coiled-coil domain containing 151
mm10_v2_chr10_+_86302854_86302854	0.167329	Rfx3_Rfx1_Rfx4	ENSMUST00000132307.1|Timp3|ENSMUSG00000020044.7|tissue inhibitor of metalloproteinase 3
mm10_v2_chr2_-_119156824_119157034	0.166122	Rfx3_Rfx1_Rfx4	ENSMUST00000135419.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000129351.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000139519.1|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3 	ENSMUST00000094695.5|Rmdn3|ENSMUSG00000070730.5|regulator of microtubule dynamics 3
mm10_v2_chr14_-_99099701_99099785	0.15882	Rfx3_Rfx1_Rfx4	ENSMUST00000042471.9|Dis3|ENSMUSG00000033166.10|DIS3 mitotic control homolog (S. cerevisiae)
mm10_v2_chr5_+_35583018_35583110	0.152639	Rfx3_Rfx1_Rfx4	ENSMUST00000068947.7|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000114237.1|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000156125.1|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl 	ENSMUST00000068563.5|Acox3|ENSMUSG00000029098.10|acyl-Coenzyme A oxidase 3, pristanoyl
mm10_v2_chr7_-_126583177_126583255	0.147232	Rfx3_Rfx1_Rfx4	ENSMUST00000098036.2|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) 	ENSMUST00000032962.4|Cln3|ENSMUSG00000030720.10|ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
mm10_v2_chr16_-_31275277_31275290	0.146486	Rfx3_Rfx1_Rfx4	ENSMUST00000060188.7|Ppp1r2|ENSMUSG00000047714.8|protein phosphatase 1, regulatory (inhibitor) subunit 2
mm10_v2_chr17_-_34850162_34850210	0.14623	Rfx3_Rfx1_Rfx4	ENSMUST00000046022.9|Skiv2l|ENSMUSG00000040356.10|superkiller viralicidic activity 2-like (S. cerevisiae)
mm10_v2_chr11_+_101552188_101552234	0.14411	Rfx3_Rfx1_Rfx4	ENSMUST00000147239.1|Nbr1|ENSMUSG00000017119.13|neighbor of Brca1 gene 1
mm10_v2_chr1_+_156366037_156366044	0.137824	Rfx3_Rfx1_Rfx4	ENSMUST00000102782.3|Gm2000|ENSMUSG00000078193.2|predicted gene 2000
mm10_v2_chr11_+_9048575_9048630	0.132135	Rfx3_Rfx1_Rfx4	ENSMUST00000043285.4|Gm11992|ENSMUSG00000040978.4|predicted gene 11992
mm10_v2_chr17_+_35979851_35979924	0.123767	Rfx3_Rfx1_Rfx4	ENSMUST00000087200.3|Gnl1|ENSMUSG00000024429.9|guanine nucleotide binding protein-like 1
mm10_v2_chr19_+_6061176_6061235	0.114398	Rfx3_Rfx1_Rfx4	ENSMUST00000162726.3|Znhit2|ENSMUSG00000075227.5|zinc finger, HIT domain containing 2
mm10_v2_chr3_-_116508071_116508208	0.113377	Rfx3_Rfx1_Rfx4	ENSMUST00000000348.8|Rtca|ENSMUSG00000000339.8|RNA 3'-terminal phosphate cyclase
mm10_v2_chr16_+_44394771_44394804	0.11004	Rfx3_Rfx1_Rfx4	ENSMUST00000099742.2|Wdr52|ENSMUSG00000071550.7|WD repeat domain 52
mm10_v2_chr11_-_120932832_120932876	0.108233	Rfx3_Rfx1_Rfx4	ENSMUST00000056781.4|Ccdc57|ENSMUSG00000048445.6|coiled-coil domain containing 57
mm10_v2_chr9_+_108508005_108508076	0.107466	Rfx3_Rfx1_Rfx4	ENSMUST00000006838.8|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase 	ENSMUST00000134939.1|Qars|ENSMUSG00000032604.8|glutaminyl-tRNA synthetase
mm10_v2_chr2_+_27009936_27010082	0.107024	Rfx3_Rfx1_Rfx4	ENSMUST00000133807.1|Cacfd1|ENSMUSG00000015488.8|calcium channel flower domain containing 1
mm10_v2_chr8_-_85555261_85555315	0.104494	Rfx3_Rfx1_Rfx4	ENSMUST00000034138.5|Dnaja2|ENSMUSG00000031701.5|DnaJ (Hsp40) homolog, subfamily A, member 2
mm10_v2_chr1_-_36445248_36445271	0.104197	Rfx3_Rfx1_Rfx4	ENSMUST00000125304.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like 	ENSMUST00000115011.1|Lman2l|ENSMUSG00000001143.7|lectin, mannose-binding 2-like
mm10_v2_chr2_-_36136602_36136625	0.102231	Rfx3_Rfx1_Rfx4	ENSMUST00000122456.1|Rbm18|ENSMUSG00000026889.6|RNA binding motif protein 18
mm10_v2_chr18_+_64887690_64887762	0.0978941	Rfx3_Rfx1_Rfx4	ENSMUST00000163516.1|Nedd4l|ENSMUSG00000024589.9|neural precursor cell expressed, developmentally down-regulated gene 4-like
mm10_v2_chr14_-_32085595_32085639	0.0978109	Rfx3_Rfx1_Rfx4	ENSMUST00000022461.4|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000067955.5|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000124303.1|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3 	ENSMUST00000112000.1|Dph3|ENSMUSG00000021905.7|diphthamine biosynthesis 3
mm10_v2_chr13_+_59585259_59585441	0.0966893	Rfx3_Rfx1_Rfx4	ENSMUST00000168367.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000022038.7|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit 	ENSMUST00000166923.1|Naa35|ENSMUSG00000021555.8|N(alpha)-acetyltransferase 35, NatC auxiliary subunit
mm10_v2_chrX_-_136993027_136993089	0.0918469	Rfx3_Rfx1_Rfx4	ENSMUST00000171738.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000056674.5|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53 	ENSMUST00000129807.1|Slc25a53|ENSMUSG00000044348.8|solute carrier family 25, member 53
mm10_v2_chr11_+_78245743_78245821	0.0907644	Rfx3_Rfx1_Rfx4	ENSMUST00000002133.8|Sdf2|ENSMUSG00000002064.10|stromal cell derived factor 2
mm10_v2_chr11_-_78245942_78245987	0.0904046	Rfx3_Rfx1_Rfx4	ENSMUST00000002121.4|Supt6|ENSMUSG00000002052.6|suppressor of Ty 6
mm10_v2_chr11_-_85850333_85850333	0.0854593	Rfx3_Rfx1_Rfx4	ENSMUST00000146433.1|Gm11444|ENSMUSG00000069785.4|predicted gene 11444
mm10_v2_chr9_+_99575776_99575829	0.0845617	Rfx3_Rfx1_Rfx4	ENSMUST00000066650.5|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae) 	ENSMUST00000148987.1|Dbr1|ENSMUSG00000032469.6|debranching enzyme homolog 1 (S. cerevisiae)
mm10_v2_chr14_+_58893465_58893506	0.0839972	Rfx3_Rfx1_Rfx4	ENSMUST00000079960.1|Rpl13-ps3|ENSMUSG00000059835.1|ribosomal protein L13, pseudogene 3
mm10_v2_chr5_+_136987019_136987019	0.074509	Rfx3_Rfx1_Rfx4	ENSMUST00000004968.4|Plod3|ENSMUSG00000004846.4|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
mm10_v2_chr12_+_84362029_84362064	0.0736934	Rfx3_Rfx1_Rfx4	ENSMUST00000110278.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast) 	ENSMUST00000145522.1|Coq6|ENSMUSG00000021235.7|coenzyme Q6 homolog (yeast)
mm10_v2_chr8_+_119575235_119575340	0.0733444	Rfx3_Rfx1_Rfx4	ENSMUST00000093100.2|Dnaaf1|ENSMUSG00000031831.6|dynein, axonemal assembly factor 1
mm10_v2_chr17_+_34837172_34837248	0.0698607	Rfx3_Rfx1_Rfx4	ENSMUST00000173995.1|Dxo|ENSMUSG00000040482.9|decapping exoribonuclease
mm10_v2_chr1_+_182124737_182124800	0.0691691	Rfx3_Rfx1_Rfx4	ENSMUST00000111018.1|Srp9|ENSMUSG00000026511.6|signal recognition particle 9 	ENSMUST00000027792.5|Srp9|ENSMUSG00000026511.6|signal recognition particle 9
mm10_v2_chr17_+_35241838_35241870	0.0651894	Rfx3_Rfx1_Rfx4	ENSMUST00000173731.1|Ddx39b|ENSMUSG00000019432.9|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
mm10_v2_chr1_-_160077918_160077944	0.0647355	Rfx3_Rfx1_Rfx4	ENSMUST00000028061.3|4930562F07Rik|ENSMUSG00000026729.4|RIKEN cDNA 4930562F07 gene
mm10_v2_chr16_+_17619503_17619517	0.0610181	Rfx3_Rfx1_Rfx4	ENSMUST00000165092.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr14_-_26066961_26066961	0.0592609	Rfx3_Rfx1_Rfx4	ENSMUST00000100818.5|Tmem254c|ENSMUSG00000072680.5|transmembrane protein 254c
mm10_v2_chr10_+_13008442_13008519	0.0547288	Rfx3_Rfx1_Rfx4	ENSMUST00000105139.3|Sf3b5|ENSMUSG00000078348.3|splicing factor 3b, subunit 5
mm10_v2_chr1_-_152766323_152766352	0.0544116	Rfx3_Rfx1_Rfx4	ENSMUST00000111857.1|Rgl1|ENSMUSG00000026482.7|ral guanine nucleotide dissociation stimulator,-like 1
mm10_v2_chr17_+_56584973_56585059	0.0530347	Rfx3_Rfx1_Rfx4	ENSMUST00000182533.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000182800.1|Safb|ENSMUSG00000071054.6|scaffold attachment factor B 	ENSMUST00000095224.4|Safb|ENSMUSG00000071054.6|scaffold attachment factor B
mm10_v2_chrX_+_134601271_134601286	0.0526366	Rfx3_Rfx1_Rfx4	ENSMUST00000050331.6|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2 	ENSMUST00000059297.5|Hnrnph2|ENSMUSG00000045427.7|heterogeneous nuclear ribonucleoprotein H2
mm10_v2_chr6_+_48395652_48395688	0.0507087	Rfx3_Rfx1_Rfx4	ENSMUST00000077093.4|Krba1|ENSMUSG00000042810.8|KRAB-A domain containing 1
mm10_v2_chr4_+_129600670_129600715	0.0473638	Rfx3_Rfx1_Rfx4	ENSMUST00000102591.3|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000181579.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234 	ENSMUST00000173758.1|Tmem234|ENSMUSG00000028797.14|transmembrane protein 234
mm10_v2_chr16_+_17619341_17619389	0.0440229	Rfx3_Rfx1_Rfx4	ENSMUST00000006053.6|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000171435.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163476.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000168101.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000165363.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000169662.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000090159.4|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000172182.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4 	ENSMUST00000163592.1|Smpd4|ENSMUSG00000005899.6|sphingomyelin phosphodiesterase 4
mm10_v2_chr10_+_87859255_87859266	0.0402208	Rfx3_Rfx1_Rfx4	ENSMUST00000105300.2|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr16_+_14580221_14580221	0.0382173	Rfx3_Rfx1_Rfx4	ENSMUST00000147024.1|A630010A05Rik|ENSMUSG00000075395.4|RIKEN cDNA A630010A05 gene
mm10_v2_chr7_-_118855984_118856014	0.0374995	Rfx3_Rfx1_Rfx4	ENSMUST00000116280.2|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000106550.3|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1 	ENSMUST00000063607.5|Knop1|ENSMUSG00000030980.10|lysine rich nucleolar protein 1
mm10_v2_chr13_+_21945084_21945140	0.0374559	Rfx3_Rfx1_Rfx4	ENSMUST00000176511.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000102978.1|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like) 	ENSMUST00000152258.2|Zfp184|ENSMUSG00000006720.10|zinc finger protein 184 (Kruppel-like)
mm10_v2_chr6_-_90428401_90428480	0.0357744	Rfx3_Rfx1_Rfx4	ENSMUST00000062750.5|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37 	ENSMUST00000165673.1|Ccdc37|ENSMUSG00000048794.8|coiled-coil domain containing 37
mm10_v2_chr15_+_79229363_79229439	0.034862	Rfx3_Rfx1_Rfx4	ENSMUST00000018295.7|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1 	ENSMUST00000053926.5|Pick1|ENSMUSG00000068206.6|protein interacting with C kinase 1
mm10_v2_chr4_-_125065603_125065703	0.0339363	Rfx3_Rfx1_Rfx4	ENSMUST00000036383.3|Dnali1|ENSMUSG00000042707.6|dynein, axonemal, light intermediate polypeptide 1
mm10_v2_chr3_-_108536466_108536536	0.0331981	Rfx3_Rfx1_Rfx4	ENSMUST00000048012.6|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene 	ENSMUST00000106626.2|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene 	ENSMUST00000106625.3|5330417C22Rik|ENSMUSG00000040412.10|RIKEN cDNA 5330417C22 gene
mm10_v2_chr12_+_35047180_35047230	0.0315153	Rfx3_Rfx1_Rfx4	ENSMUST00000048519.9|Snx13|ENSMUSG00000020590.9|sorting nexin 13 	ENSMUST00000163677.1|Snx13|ENSMUSG00000020590.9|sorting nexin 13
mm10_v2_chr7_+_100495987_100496079	0.0269232	Rfx3_Rfx1_Rfx4	ENSMUST00000133044.1|Ucp2|ENSMUSG00000033685.6|uncoupling protein 2 (mitochondrial, proton carrier)
mm10_v2_chr13_-_97137877_97137926	0.0251369	Rfx3_Rfx1_Rfx4	ENSMUST00000073456.7|Nsa2|ENSMUSG00000060739.7|NSA2 ribosome biogenesis homolog (S. cerevisiae)
mm10_v2_chr8_+_124231359_124231450	0.0213229	Rfx3_Rfx1_Rfx4	ENSMUST00000034458.8|Galnt2|ENSMUSG00000089704.3|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
mm10_v2_chr10_+_87859062_87859094	0.0189552	Rfx3_Rfx1_Rfx4	ENSMUST00000095360.4|Igf1|ENSMUSG00000020053.12|insulin-like growth factor 1
mm10_v2_chr4_-_141664063_141664170	0.0168189	Rfx3_Rfx1_Rfx4	ENSMUST00000084203.4|Plekhm2|ENSMUSG00000028917.8|pleckstrin homology domain containing, family M (with RUN domain) member 2
mm10_v2_chr5_-_92675253_92675287	0.0160356	Rfx3_Rfx1_Rfx4	ENSMUST00000151180.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158 	ENSMUST00000150359.1|Ccdc158|ENSMUSG00000050050.10|coiled-coil domain containing 158
mm10_v2_chr2_-_26380600_26380654	0.0156053	Rfx3_Rfx1_Rfx4	ENSMUST00000114115.2|Snapc4|ENSMUSG00000036281.7|small nuclear RNA activating complex, polypeptide 4 	ENSMUST00000035427.4|Snapc4|ENSMUSG00000036281.7|small nuclear RNA activating complex, polypeptide 4
mm10_v2_chr6_-_88518760_88518905	0.0155274	Rfx3_Rfx1_Rfx4	ENSMUST00000032168.5|Sec61a1|ENSMUSG00000030082.8|Sec61 alpha 1 subunit (S. cerevisiae)
mm10_v2_chr7_-_80901220_80901269	0.0114882	Rfx3_Rfx1_Rfx4	ENSMUST00000146402.1|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73 	ENSMUST00000026816.8|Wdr73|ENSMUSG00000025722.10|WD repeat domain 73
mm10_v2_chr2_+_129129700_129129791	0.00782398	Rfx3_Rfx1_Rfx4	ENSMUST00000035481.4|Chchd5|ENSMUSG00000037938.4|coiled-coil-helix-coiled-coil-helix domain containing 5
mm10_v2_chr13_-_24937585_24937691	0.00724295	Rfx3_Rfx1_Rfx4	ENSMUST00000037615.6|Aldh5a1|ENSMUSG00000035936.6|aldhehyde dehydrogenase family 5, subfamily A1
mm10_v2_chr6_+_34029421_34029456	0.00311766	Rfx3_Rfx1_Rfx4	ENSMUST00000070189.3|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing 	ENSMUST00000101564.2|Lrguk|ENSMUSG00000056215.6|leucine-rich repeats and guanylate kinase domain containing
mm10_v2_chr11_+_76407143_76407201	0.000409639	Rfx3_Rfx1_Rfx4	ENSMUST00000021203.6|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22 	ENSMUST00000152183.1|Timm22|ENSMUSG00000020843.9|translocase of inner mitochondrial membrane 22
